Psyllid ID: psy3045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MVGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccEEEEEEccccEEEEEEEccccccEEEEccccccccccccEEEEEEcEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEEEEEcccEEEEEEccEEcccccccEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccEEEEcccEEEEcccccEEEEEEEEEEcccEEEEEEccEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEcccEccccccEEEEcccEEEEEEcccccccEEEEEEEccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccEEEccccEEEEcccEEEEEEEEEcccccEEEEEEcccEcccccccEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEcccEcccccc
Coil and Loop (DISEMBL)
mvgsdlkpvgfkaptfssvsdiirfkkpggesFALLCEAQENMWFKFiegssrkvavplndrvkQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTaplaagveptvqtidfgrpaqftckyeispplaagveptvqtidfgrpaqftckyegnpvktiswmkdgkpvpdhnepvfridsvrkedKGMYQCVIRNEQESaqasgelklggrfdppvikesfsdetlnpgpnyyfkciasgnptpeiswyldgkklvnaer
Flexible Loop (DISEMBL)
mvgsdlkpvgfkaptfssvsdiIRFKKPGGESFALLCEAQENMWFKFIEGssrkvavplndrvkqvsgtliikeakvedsgkYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWmkdgkpvpdhnepvfridsvrkEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASgnptpeiswyldgkkLVNAER
Low Complexity Region (SEG)
MVGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER
Disordered region (IsUnstruct)
**************TFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD**********VFRID*******GMYQCVI**********************************PGPNYYFKCIASGNPTPEISWYLDGK*******
Disordered Region (DISOPRED)
MVGSD*KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVA*PL*DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAA**********************ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL***KL*****
Disordered Region (DISEMBL)
MVGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER
Disordered Region (DISPRO)
****DLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLA***********************ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.734	0.094	0.360	1e-26
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.685	0.089	0.283	1e-14
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	yes	N/A	0.655	0.031	0.271	2e-14
P97528	1028	Contactin-6 OS=Rattus nor	no	N/A	0.681	0.177	0.291	2e-14
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.685	0.089	0.278	3e-14
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.625	0.122	0.279	6e-14
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.674	0.035	0.294	1e-13
Q9UQ52	1028	Contactin-6 OS=Homo sapie	no	N/A	0.681	0.177	0.281	2e-13
P21804	819	Fibroblast growth factor	no	N/A	0.827	0.269	0.243	2e-13
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.610	0.128	0.285	3e-13

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 115/241 (47%), Gaps = 45/241 (18%)

Query: 31  ESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           E   LLC AQ     E  WF      +  + V    RV+ +   L I+    EDSG Y C
Sbjct: 253 EGAVLLCVAQGCPSPEYSWFT--HNGAGPLPVLSGPRVRLLGPILAIEAVTGEDSGVYKC 310

Query: 86  VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145
              N  G  S E  LTV  P+                     + EISP         V +
Sbjct: 311 TAGNVGGEASAELRLTVATPI---------------------QVEISP--------NVLS 341

Query: 146 IDFGRPAQFTC--KYEGNPV--KTISWMKDGKPVPDHN--EPVFRIDSVRKEDKGMYQCV 199
           +  G  A+F C     G+PV  + I W KDG+ +P     E    +  V +E++GMYQCV
Sbjct: 342 VHMGGTAEFRCLVTSNGSPVGMQNILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQCV 401

Query: 200 IRN-EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
           +R  E ++ QA+ EL+LG    PPV+  SF ++TL PGP    KC A+GNPTP+ISW LD
Sbjct: 402 VRRPEGDTFQATAELQLGD--APPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLD 459

Query: 259 G 259
           G
Sbjct: 460 G 460

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 25/208 (12%)

Query: 57  VPLNDR-VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
           +P + R  K+++G L I + + EDSG Y+C V N+ G      +LTV  PL   + P   
Sbjct: 266 LPADSRWAKRITG-LTISDLRTEDSGTYICEVTNTFGSAEANGILTVIDPLHVTLTPKKL 324

Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
               G     +C    SP           TI + R  +     E   ++ +S        
Sbjct: 325 KTGIGSTVILSCALTGSPEF---------TIRWYRNTELVLPGEAISIRGLS-------- 367

Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
              NE +  I S +K   G YQC    + ++AQ    + L      P I  SFS++ +NP
Sbjct: 368 ---NETLL-ISSAQKSHSGAYQCFATRKAQTAQDFAIIVL--EDGTPRIVSSFSEKVVNP 421

Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLV 263
           G  +   C A G P P ++W LD + +V
Sbjct: 422 GEQFSLMCAAKGAPPPTVTWALDDEPVV 449

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 31/206 (15%)

Query: 69   TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
            TL IKEA++ D+G+Y CV +N  G + ++  + +  P      P+ Q +           
Sbjct: 2729 TLQIKEAQISDTGRYTCVASNIAGEDELDFDVNIQVP------PSFQKL----------- 2771

Query: 129  YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-------P 181
            +EI   L  G     + +    P    C+    P  T++W KDG P+   ++        
Sbjct: 2772 WEIGNMLDTGRNGEAKDVIINNPISLYCETNAAPPPTLTWYKDGHPLTSSDKVLILPGGR 2831

Query: 182  VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD----ETLNPGP 237
            V +I   + ED G Y CV  NE        ++++     PP+IK + SD     T+    
Sbjct: 2832 VLQIPRAKVEDAGRYTCVAVNEAGEDSLQYDVRV---LVPPIIKGANSDLPEEVTVLVNK 2888

Query: 238  NYYFKCIASGNPTPEISWYLDGKKLV 263
            +   +C++SG+P P  SW  DG+ L+
Sbjct: 2889 SALIECLSSGSPAPRNSWQKDGQPLL 2914

Homo sapiens (taxid: 9606)

>sp|P97528|CNTN6_RAT Contactin-6 OS=Rattus norvegicus GN=Cntn6 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 31/213 (14%)

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           V Q +G L I + +  D G Y C V N     SV+   T          P VQ  D G  
Sbjct: 174 VSQNTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPT----------PLVQRTD-GVM 222

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPA--QFTCKYEGNPVKTISWMK-DGKPVP--- 176
            ++  K E+  P         +TI   + +  +  C   GNPV  ISW + DG P+P   
Sbjct: 223 GEYEPKIEVRFP---------ETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPMPGKV 273

Query: 177 --DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN 234
              +++    I   ++ED+G Y+CV  N +    A G+L     + PP  ++   +  L+
Sbjct: 274 KYSNSQATLEIPKFQQEDEGFYECVAGNLRGRNLAKGQLIF---YAPPEWEQKIQNTYLS 330

Query: 235 PGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              + +++C ASGNP P  +W  +G++L   ER
Sbjct: 331 IYDSLFWECKASGNPNPSYTWLKNGERLNTEER 363

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. May be involved in motor coordination.

Rattus norvegicus (taxid: 10116)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 25/208 (12%)

Query: 57  VPLNDR-VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
           +P + R  K+++G L I + + EDSG Y+C V N+ G      +L V  PL   + P   
Sbjct: 266 LPADSRWTKRITG-LTISDLRTEDSGTYICEVTNTFGSAEATGILMVIDPLHVTLTPKKL 324

Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
               G     +C    SP           TI + R  +     E   ++ +S        
Sbjct: 325 KTGIGSTVILSCALTGSPEF---------TIRWYRNTELVLPDEAISIRGLS-------- 367

Query: 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
              NE +  I S +K   G YQC    + ++AQ    + L      P I  SFS++ +NP
Sbjct: 368 ---NETLL-ITSAQKSHSGAYQCFATRKAQTAQDFAIIAL--EDGTPRIVSSFSEKVVNP 421

Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLV 263
           G  +   C A G P P ++W LD + +V
Sbjct: 422 GEQFSLMCAAKGAPPPTVTWALDDEPIV 449

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 44/211 (20%)

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTIDFG 120
           R+    G L++      D+G Y+CV +N  G  ES    L V           ++   F 
Sbjct: 213 RITIRGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVV-----------LERPSFL 261

Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---- 176
           R                   P  Q +    P  F C+ +G+P   + W KD   +P    
Sbjct: 262 R------------------RPINQVVLADAPVNFLCEVQGDPQPNLHWRKDDGELPAGRY 303

Query: 177 ----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET 232
               DH+     ID V  ED+G Y CV  N    A+ASG L +     PP       ++T
Sbjct: 304 EIRSDHS---LWIDQVSSEDEGTYTCVAENSVGRAEASGSLSV---HVPPQFVTKPQNQT 357

Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
           + PG N  F+C   GNP P I W  +G +++
Sbjct: 358 VAPGANVSFQCETKGNPPPAIFWQKEGSQVL 388

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 37/217 (17%)

Query: 57   VPLNDR-VKQVSG-TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
            +PL+ R +   SG TL I + ++ DSG + CV  +  G       L V  P      P +
Sbjct: 3388 LPLSQRTLLHSSGRTLRISQVQLADSGVFTCVAASPAGVADRNFTLLVLVP------PIL 3441

Query: 115  QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP 174
            + ++F          E+  P                     C+  G+P+  +SWMKDG+P
Sbjct: 3442 EPVEFQNNVMAAQGSEVVLP---------------------CEARGSPLPLVSWMKDGEP 3480

Query: 175  V-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES--FS 229
            + P   E  P  +++SV   D G Y C   +E   A+   +L +    DPP I+ES   S
Sbjct: 3481 LLPQSLEQGPGLKLESVSVGDAGTYSCTAASEAGEARRHFQLTV---MDPPHIEESGETS 3537

Query: 230  DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
            + +L PG +    C A G P P I+W+ DG+ L   E
Sbjct: 3538 ELSLTPGAHLELLCEARGIPPPNITWHKDGQALRRTE 3574

Mus musculus (taxid: 10090)

>sp|Q9UQ52|CNTN6_HUMAN Contactin-6 OS=Homo sapiens GN=CNTN6 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 31/213 (14%)

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           V Q +G L I + +  D G Y C + N     SV+   T          P VQ  D G  
Sbjct: 174 VSQETGNLYIAKVEPSDVGNYTCFITNKEAQRSVQGPPT----------PLVQRTD-GVM 222

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPA--QFTCKYEGNPVKTISWMK-DGKPVP--- 176
            ++  K E+  P         +TI   + +  +  C   GNPV  ISW + DG P+P   
Sbjct: 223 GEYEPKIEVRFP---------ETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPLPGKV 273

Query: 177 --DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN 234
               ++ +  I + ++ED+G Y+C+  N +    A G+L     + PP  ++   +  L+
Sbjct: 274 KYSKSQAILEIPNFQQEDEGFYECIASNLRGRNLAKGQLIF---YAPPEWEQKIQNTHLS 330

Query: 235 PGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              N  ++C ASG P P  +W  +G++L   ER
Sbjct: 331 IYDNLLWECKASGKPNPWYTWLKNGERLNPEER 363

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. Involved in motor coordination.

Homo sapiens (taxid: 9606)

>sp|P21804|FGFR1_CHICK Fibroblast growth factor receptor 1 OS=Gallus gallus GN=FGFR1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 25/246 (10%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G+   L C  ++++  + I      V +P N+R +     + +++A  EDSG Y C+ N+
Sbjct: 47  GDLLQLRCRLRDDV--QSINWVRDGVQLPENNRTRITGEEVEVRDAVPEDSGLYACMTNS 104

Query: 90  SVGGESVETVLTVTAPLAAG--------VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
             G E+    + V+  L +              +  D  +P Q    Y   P     +E 
Sbjct: 105 PSGSETTYFSVNVSDALPSAEDDDDEDDSSSEEKEADNTKPNQAVAPYWTYP---EKMEK 161

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKE 191
            +  +   +  +F C   G P  T+ W+K+GK   PDH    +++         DSV   
Sbjct: 162 KLHAVPAAKTVKFKCPSGGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS 221

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNP 249
           DKG Y C++ N+  S   + +L +  R    P+++    +++T+  G N  F C    +P
Sbjct: 222 DKGNYTCIVENKYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFVCKVYSDP 281

Query: 250 TPEISW 255
            P I W
Sbjct: 282 QPHIQW 287

Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of embryonic development, cell proliferation, differentiation and migration. Required for normal mesoderm patterning and normal skeletogenesis. Phosphorylates PLCG1, FRS2, GAB1 and SHB. Ligand binding leads to the activation of several signaling cascades. Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol-1,4,5-trisphosphate. Phosphorylation of FRS2 triggers recruitment of GRB2, GAB1, PIK3R1 and SOS1, and mediates activation of RAS, MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling pathway, as well as of the AKT1 signaling pathway. Promotes phosphorylation of SHC1, STAT1 and PTPN11/SHP2. In the nucleus, enhances RPS6KA1 and CREB1 activity and contributes to the regulation of transcription. FGFR1 signaling is down-regulated by ubiquitination, internalization and degradation.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 37/200 (18%)

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
           G LII      DSG Y CV NN VG         V+ P    V        F +P     
Sbjct: 188 GNLIIDPVDRSDSGTYQCVANNMVGER-------VSNPARLSV--------FEKP----- 227

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV----- 182
           K+E         EP   T+D G    F C+  G+P   I+W +  +P+P     +     
Sbjct: 228 KFE--------QEPKDMTVDVGAAVLFDCRVTGDPQPQITWKRKNEPMPVTRAYIAKDNR 279

Query: 183 -FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
             RI+ V+  D+G Y C  RN   + +AS  L++     PP  +   +D+++  G    F
Sbjct: 280 GLRIERVQPSDEGEYVCYARNPAGTLEASAHLRVQA---PPSFQTKPADQSVPAGGTATF 336

Query: 242 KCIASGNPTPEISWYLDGKK 261
           +C   G P+P   W  +G++
Sbjct: 337 ECTLVGQPSPAYFWSKEGQQ 356

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
116007654	2016	down syndrome cell adhesion molecule, is	0.865	0.114	0.612	4e-89
116007568	2019	down syndrome cell adhesion molecule, is	0.865	0.114	0.609	2e-88
116007598	2031	down syndrome cell adhesion molecule, is	0.865	0.113	0.609	3e-88
116007656	2032	down syndrome cell adhesion molecule, is	0.865	0.113	0.609	3e-88
195431192	2234	GK22019 [Drosophila willistoni] gi|19415	0.868	0.103	0.621	3e-88
116007644	2032	down syndrome cell adhesion molecule, is	0.865	0.113	0.616	9e-88
45552493	2022	down syndrome cell adhesion molecule, is	0.865	0.114	0.609	2e-87
386767201	2035	down syndrome cell adhesion molecule, is	0.865	0.113	0.609	2e-87
116007590	2035	down syndrome cell adhesion molecule, is	0.865	0.113	0.620	3e-87
386767221	2019	down syndrome cell adhesion molecule, is	0.865	0.114	0.620	4e-87

>gi|116007654|ref|NP_001036523.1| down syndrome cell adhesion molecule, isoform J [Drosophila melanogaster] gi|113194628|gb|ABI31074.1| down syndrome cell adhesion molecule, isoform J [Drosophila melanogaster]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 163/266 (61%), Positives = 200/266 (75%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +P+G +APTFS+ S +  + +P G+SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 240 EPIGARAPTFSTDSIVFSYIRPVGQSFALLCQAQAYPVPAMRWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 349

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 350 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007568|ref|NP_001036480.1| down syndrome cell adhesion molecule, isoform AX [Drosophila melanogaster] gi|113194585|gb|ABI31031.1| down syndrome cell adhesion molecule, isoform AX [Drosophila melanogaster]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 162/266 (60%), Positives = 199/266 (74%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +P+G +APTFS+ S+   + +  G+SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 243 EPIGARAPTFSTDSNSFSYTRSVGQSFALLCQAQAYPVPIMRWYKFIEGTTRKQAVVLND 302

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 303 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 352

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 353 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 392

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 393 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 452

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 453 KCVAGGNPTPEISWELDGKKIANNDR 478

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007598|ref|NP_001036495.1| down syndrome cell adhesion molecule, isoform X [Drosophila melanogaster] gi|113194600|gb|ABI31046.1| down syndrome cell adhesion molecule, isoform X [Drosophila melanogaster]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/266 (60%), Positives = 199/266 (74%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +P+G +APTFS+ S+   + +  G+SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 243 EPIGARAPTFSTDSNSFSYTRSVGQSFALLCQAQAYPVPIMRWYKFIEGTTRKQAVVLND 302

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 303 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 352

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 353 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 392

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 393 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 452

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 453 KCVAGGNPTPEISWELDGKKIANNDR 478

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007656|ref|NP_001036524.1| down syndrome cell adhesion molecule, isoform AO [Drosophila melanogaster] gi|113194629|gb|ABI31075.1| down syndrome cell adhesion molecule, isoform AO [Drosophila melanogaster]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/266 (60%), Positives = 199/266 (74%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +P+G +APTFS+ S+   + +  G+SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 240 EPIGARAPTFSTDSNSFSYTRSVGQSFALLCQAQAYPVPIMRWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 349

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 350 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431192|ref|XP_002063632.1| GK22019 [Drosophila willistoni] gi|194159717|gb|EDW74618.1| GK22019 [Drosophila willistoni]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/267 (62%), Positives = 196/267 (73%), Gaps = 35/267 (13%)

Query: 6   LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLN 60
           L+PVG KAPTFS  S    F K    SFALLC+AQ        W+KFIEG++RK AV LN
Sbjct: 447 LEPVGAKAPTFSGESKSFTFVKEISSSFALLCQAQAYPVPILRWYKFIEGTTRKQAVVLN 506

Query: 61  DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFG 120
           DRVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++         
Sbjct: 507 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--------- 557

Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
                               P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+E
Sbjct: 558 --------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSE 596

Query: 181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
           PV RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ +
Sbjct: 597 PVLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVF 656

Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
            KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 657 LKCVAGGNPTPEISWELDGKKIANNDR 683

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007644|ref|NP_001036518.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster] gi|113194623|gb|ABI31069.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster]

 Score =  329 bits (843), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 164/266 (61%), Positives = 197/266 (74%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +PVG KAPTFS    +I  +K  G +FALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 240 EPVGAKAPTFSLEYKLIEVQKSKGTAFALLCQAQAFPVPIIRWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 349

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 350 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552493|ref|NP_995769.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster] gi|45445657|gb|AAS64901.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/266 (60%), Positives = 194/266 (72%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +PVGFKAP+F SV+     + P     AL CEAQ        W+KFIEG++RK AV LND
Sbjct: 240 EPVGFKAPSFPSVASTFTIQSPKKSELALTCEAQSYPVPIFKWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 349

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 350 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386767201|ref|NP_001246164.1| down syndrome cell adhesion molecule, isoform BZ, partial [Drosophila melanogaster] gi|383302292|gb|AFH07919.1| down syndrome cell adhesion molecule, isoform BZ, partial [Drosophila melanogaster]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/266 (60%), Positives = 194/266 (72%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +PVGFKAP+F SV+     + P     AL CEAQ        W+KFIEG++RK AV LND
Sbjct: 240 EPVGFKAPSFPSVASTFTIQSPKKSELALTCEAQSYPVPIFKWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 349

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 350 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007590|ref|NP_001036491.1| down syndrome cell adhesion molecule, isoform Y [Drosophila melanogaster] gi|113194596|gb|ABI31042.1| down syndrome cell adhesion molecule, isoform Y [Drosophila melanogaster]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/266 (62%), Positives = 195/266 (73%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +PVG KAPTFS  S    F K    SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 243 EPVGAKAPTFSGESKSFTFVKEISTSFALLCQAQAFPVPIIRWYKFIEGTTRKQAVVLND 302

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 303 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 352

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 353 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 392

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 393 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 452

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 453 KCVAGGNPTPEISWELDGKKIANNDR 478

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386767221|ref|NP_001246174.1| down syndrome cell adhesion molecule, isoform BO [Drosophila melanogaster] gi|383302302|gb|AFH07929.1| down syndrome cell adhesion molecule, isoform BO [Drosophila melanogaster]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 165/266 (62%), Positives = 197/266 (74%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +PVG KAPTFSS S    F++    SFALLC+AQ        W+KFIEG++RK AV LND
Sbjct: 243 EPVGAKAPTFSSDSKGSIFERSIKASFALLCQAQAFPVPIIRWYKFIEGTTRKQAVVLND 302

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++          
Sbjct: 303 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID---------- 352

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                              P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EP
Sbjct: 353 -------------------PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEP 392

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 393 VLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 452

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 453 KCVAGGNPTPEISWELDGKKIANNDR 478

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.509	0.066	0.664	1.4e-50
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.505	0.070	0.416	1.6e-25
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.808	0.105	0.283	2.8e-20
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.486	0.025	0.347	1.3e-18
UNIPROTKB|F1S0Y1	4061	F1S0Y1 "Uncharacterized protei	0.501	0.032	0.326	2.5e-18
ZFIN|ZDB-GENE-080807-4	3422	hspg2 "heparan sulfate proteog	0.486	0.037	0.340	2.4e-17
UNIPROTKB|F1PEU6	5106	F1PEU6 "Uncharacterized protei	0.501	0.026	0.326	1.5e-16
RGD|62008	1028	Cntn6 "contactin 6" [Rattus no	0.689	0.178	0.293	8.4e-15
UNIPROTKB|F6UXF9	3263	F6UXF9 "Uncharacterized protei	0.501	0.041	0.326	9e-15
ZFIN|ZDB-GENE-030131-9765	2925	hmcn2 "hemicentin 2" [Danio re	0.479	0.043	0.333	2.4e-14

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 541 (195.5 bits), Expect = 1.4e-50, P = 1.4e-50
 Identities = 91/137 (66%), Positives = 117/137 (85%)

Query:   131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK 190
             ++ PL+A ++P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+K
Sbjct:   340 VTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKK 398

Query:   191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
             EDKGMYQC +RN+QESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPT
Sbjct:   399 EDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT 458

Query:   251 PEISWYLDGKKLVNAER 267
             PEISW LDGKK+ N +R
Sbjct:   459 PEISWELDGKKIANNDR 475

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 60/144 (41%), Positives = 86/144 (59%)

Query:   131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-------PVF 183
             ++ PL A ++P VQT+D  + AQF C   G+PV  ++W+ DGKP+   N        P  
Sbjct:   326 VTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPRL 385

Query:   184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
              I  V+KED GMYQC + NE E  Q++ EL+LG     P +   FS++TL PGP    KC
Sbjct:   386 IIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDA--SPELLYWFSEQTLQPGPTVSLKC 443

Query:   244 IASGNPTPEISWYLDGKKLVNAER 267
             +A+GNP P+ +W LDG  + ++ R
Sbjct:   444 VATGNPLPQFTWSLDGFPIPDSSR 467

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 68/240 (28%), Positives = 119/240 (49%)

Query:    30 GESFALLCEAQENMWFKF----IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
             G    L C  Q N +  F    +  S+    +P + RV      L+IK A   D+GK++C
Sbjct:   261 GNDVHLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWIC 320

Query:    86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145
               +N  G + +E  L+V + ++  + P VQ ++ G  A F C          G    +  
Sbjct:   321 QASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCT-------TTG--SAIDA 371

Query:   146 IDFGRPAQFTCKYEGNPVKTISWMKDGKP-VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
             ID+         + G P++  + +  G+  +   ++    + +V + D+G+YQC++ N++
Sbjct:   372 IDW--------LHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQR 423

Query:   205 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
              SAQA  ELKLG    P +I  +F ++ + PGP    KC ASG+P P+ +W LD + +++
Sbjct:   424 ASAQAMAELKLGDTV-PELIY-TFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMD 481

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 49/141 (34%), Positives = 70/141 (49%)

Query:   133 PPLAAGVE--PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDS 187
             PP+   VE    V     G      C+  G+P+  +SWMKDG+P+ P   E  P  +++S
Sbjct:  3438 PPILEPVEFQNNVMAAQ-GSEVVLPCEARGSPLPLVSWMKDGEPLLPQSLEQGPGLKLES 3496

Query:   188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES--FSDETLNPGPNYYFKCIA 245
             V   D G Y C   +E   A+   +L +    DPP I+ES   S+ +L PG +    C A
Sbjct:  3497 VSVGDAGTYSCTAASEAGEARRHFQLTV---MDPPHIEESGETSELSLTPGAHLELLCEA 3553

Query:   246 SGNPTPEISWYLDGKKLVNAE 266
              G P P I+W+ DG+ L   E
Sbjct:  3554 RGIPPPNITWHKDGQALRRTE 3574

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|F1S0Y1 F1S0Y1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 47/144 (32%), Positives = 75/144 (52%)

Query:   125 FTCKYEISPPLAAGVEPTVQTIDF-GRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNE-- 180
             FT +  + PP+   +E     +   G P    C+  G+P+  +SWMK+G+P+ P   E  
Sbjct:  2391 FTLQVHV-PPVLEPIEFQNDVVVVQGSPVVLPCEARGSPLPLVSWMKNGEPLLPQSLEQG 2449

Query:   181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF--SDETLNPGPN 238
             P  ++++V   D G Y CV  +E   A+   +L +    DPP I++S   ++ +L PG  
Sbjct:  2450 PGLQLETVGAGDSGTYSCVAVSEAGEARRHFQLTV---MDPPHIEDSGQPAELSLTPGAP 2506

Query:   239 YYFKCIASGNPTPEISWYLDGKKL 262
                 C A G PTP I+W+ DG+ L
Sbjct:  2507 LELLCDARGTPTPNITWHKDGQAL 2530

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-080807-4 hspg2 "heparan sulfate proteoglycan 2" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 47/138 (34%), Positives = 66/138 (47%)

Query:   123 AQFTCKYEIS--PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
             AQ + K  I   P +   V  +VQT+  G   +F C   G+P  T+ W K G P+PDH E
Sbjct:  2513 AQDSAKLLIQALPKVKINVRTSVQTVMVGNSVEFECHAIGDPEPTVRWSKVGAPLPDHVE 2572

Query:   181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
                 + RID V + D G Y+C   N+  S  +   L +        + ES  + T+  G 
Sbjct:  2573 IRGNILRIDQVFESDSGQYRCTATNDVGSEHSHVVLNIQSLPQIAALPES-KEVTI--GS 2629

Query:   238 NYYFKCIASGNPTPEISW 255
             +    CIASG P P I+W
Sbjct:  2630 DAVLPCIASGYPVPTITW 2647

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

UNIPROTKB|F1PEU6 F1PEU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 47/144 (32%), Positives = 71/144 (49%)

Query:   125 FTCKYEISPPLA-AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNE-- 180
             FT +  + P L    V+  V  +  G      C+  G+P+  +SWMKDG+P+ P   E  
Sbjct:  3440 FTLQVHVPPVLEPVEVQNDVAVVR-GSSVVLPCEARGSPLPLVSWMKDGEPLLPQSLEQG 3498

Query:   181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF--SDETLNPGPN 238
             P   +++    D G Y CV  +E   A+   +L +    DPP I++S   ++  L PG  
Sbjct:  3499 PSLLLETAGAGDAGTYSCVAVSEAGEARRHFQLTV---MDPPYIEDSGQPAELLLTPGTP 3555

Query:   239 YYFKCIASGNPTPEISWYLDGKKL 262
                 C A GNP P I+W+ DG+ L
Sbjct:  3556 LELHCEARGNPPPNITWHKDGQGL 3579

GO:0005509 "calcium ion binding" evidence=IEA

RGD|62008 Cntn6 "contactin 6" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 62/211 (29%), Positives = 95/211 (45%)

Query:    63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
             V Q +G L I + +  D G Y C V N     SV+   T          P VQ  D G  
Sbjct:   174 VSQNTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPT----------PLVQRTD-GVM 222

Query:   123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVP----- 176
              ++  K E+  P       T+Q        +  C   GNPV  ISW + DG P+P     
Sbjct:   223 GEYEPKIEVRFP------ETIQAAK-DSSVKLECFALGNPVPDISWRRLDGSPMPGKVKY 275

Query:   177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 236
              +++    I   ++ED+G Y+CV  N +    A G+L     + PP  ++   +  L+  
Sbjct:   276 SNSQATLEIPKFQQEDEGFYECVAGNLRGRNLAKGQLIF---YAPPEWEQKIQNTYLSIY 332

Query:   237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              + +++C ASGNP P  +W  +G++L   ER
Sbjct:   333 DSLFWECKASGNPNPSYTWLKNGERLNTEER 363

GO:0007155 "cell adhesion" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0046658 "anchored to plasma membrane" evidence=TAS

UNIPROTKB|F6UXF9 F6UXF9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
 Identities = 47/144 (32%), Positives = 71/144 (49%)

Query:   125 FTCKYEISPPLA-AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNE-- 180
             FT +  + P L    V+  V  +  G      C+  G+P+  +SWMKDG+P+ P   E  
Sbjct:  1633 FTLQVHVPPVLEPVEVQNDVAVVR-GSSVVLPCEARGSPLPLVSWMKDGEPLLPQSLEQG 1691

Query:   181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF--SDETLNPGPN 238
             P   +++    D G Y CV  +E   A+   +L +    DPP I++S   ++  L PG  
Sbjct:  1692 PSLLLETAGAGDAGTYSCVAVSEAGEARRHFQLTV---MDPPYIEDSGQPAELLLTPGTP 1748

Query:   239 YYFKCIASGNPTPEISWYLDGKKL 262
                 C A GNP P I+W+ DG+ L
Sbjct:  1749 LELHCEARGNPPPNITWHKDGQGL 1772

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9765 hmcn2 "hemicentin 2" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 47/141 (33%), Positives = 68/141 (48%)

Query:   132 SPPLAAGVEPTVQT-IDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVF 183
             +PP     EPT Q  +  G     TC+  G P  T+SW+KDG+P+  H        E  F
Sbjct:  1106 APPAVERTEPTEQVAVVQGSSVTLTCEARGVPPPTLSWLKDGQPLSLHRNLLLDGQETRF 1165

Query:   184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS-DETLNPGPNYY-F 241
              +  V   D G+Y CV  N+  S+  +  L +    +PP I  S S +E L    +    
Sbjct:  1166 LLSDVGPSDAGLYSCVASNQAGSSTKTFNLTV---LEPPKITGSLSPEEQLIAVDSLLEL 1222

Query:   242 KCIASGNPTPEISWYLDGKKL 262
             +CIA+G P P +SW  DG+ +
Sbjct:  1223 ECIATGLPPPTLSWLKDGRPI 1243

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IGI

GO:0090497 "mesenchymal cell migration" evidence=IGI

GO:0035122 "embryonic medial fin morphogenesis" evidence=IGI

GO:0030198 "extracellular matrix organization" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	267
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-13
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-10
smart00409	85	smart00409, IG, Immunoglobulin	2e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-07
smart00409	85	smart00409, IG, Immunoglobulin	1e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-07
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	8e-07
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-06
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	8e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	9e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	9e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	6e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	1e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	1e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	3e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	4e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	5e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	8e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	9e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.001
cd05756	94	cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-	0.001
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.002
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.002
cd05742	84	cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)	0.002
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.002
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.003
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.004
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.004
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNE 203
           G+    TC  EGNPV  I+W+KDGKP+P+ N  V       I SV  ED G+Y CV  N 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
           P    +  G  A+FTC   G+P  T+SW KDG+P+          +       I +V+ +
Sbjct: 7   PKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPD 66

Query: 192 DKGMYQCVIRNEQESAQASGELK 214
           D+G Y CV  N    A+AS EL 
Sbjct: 67  DEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVI 200
            D G   ++ CK  GNP     W+K+G+P+   N         RI  +   D GMYQCV 
Sbjct: 11  ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVA 70

Query: 201 RNEQESAQASGELKL 215
            N+  +  AS EL +
Sbjct: 71  ENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 13/72 (18%)

Query: 152 AQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQC 198
              TC   G P  TI+W+K+GKP+P       R             I +V  ED G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 199 VIRNEQESAQAS 210
           V  N   +  AS
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG----------KPVPDHNEPVFRIDSVRK 190
           P   T+  G     +C+  G+P   ++W K G                +     I +V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 191 EDKGMYQCVIRNEQESAQASGELK 214
           ED G Y C   N   SA +   L 
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG----------KPVPDHNEPVFRIDSVRK 190
           P   T+  G     +C+  G+P   ++W K G                +     I +V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 191 EDKGMYQCVIRNEQESAQASGELK 214
           ED G Y C   N   SA +   L 
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 16/79 (20%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV--------------PDHNEPVFRID 186
           P+   +  G PA   CK EG P  TI W+K+G+P+              P  +    R+ 
Sbjct: 8   PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVV 67

Query: 187 SVRK--EDKGMYQCVIRNE 203
             RK   D+G+Y CV  N 
Sbjct: 68  HGRKGRSDEGVYVCVAHNS 86

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
          G+S  L C A+ N      W K  +G      +P ++R      TL IK   +EDSG Y 
Sbjct: 2  GQSVTLTCPAEGNPVPNITWLK--DGKP----LPESNRFVASGSTLTIKSVSLEDSGLYT 55

Query: 85 CVVNNSVG 92
          CV  NS G
Sbjct: 56 CVAENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GES    C    +      WFK  +G   + +       +  + TL I   + +D GKY 
Sbjct: 15  GESARFTCTVTGDPDPTVSWFK--DGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYT 72

Query: 85  CVVNNSVGGESVETVLTV 102
           CV  NS G       LTV
Sbjct: 73  CVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSGK 82
           GES  L CEA  +      W+K      + +A      V +     TL I     EDSG 
Sbjct: 9   GESVTLSCEASGSPPPEVTWYK---QGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 83  YLCVVNNSVGGESVETVLTV 102
           Y C   NS G  S  T LTV
Sbjct: 66  YTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSGK 82
           GES  L CEA  +      W+K      + +A      V +     TL I     EDSG 
Sbjct: 9   GESVTLSCEASGSPPPEVTWYK---QGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 83  YLCVVNNSVGGESVETVLTV 102
           Y C   NS G  S  T LTV
Sbjct: 66  YTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCV 199
            P+   +  G     TC   GNP    +W KDG P+       F   +V  ED G Y CV
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF-TPNVSAEDSGTYTCV 63

Query: 200 IRNEQES 206
             N    
Sbjct: 64  ASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 160 GNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRN---EQESAQA 209
           G+P  T+SW KDG+P+   NE V         I   RK D+G Y+CV  N   E+ESA A
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 35 LLCEAQEN-----MWFK--FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87
          L C A         W K      SS    V  +      S TL I    +EDSG Y CV 
Sbjct: 3  LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA 62

Query: 88 NNSVGGESVETV 99
          +NS G  S    
Sbjct: 63 SNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 14/79 (17%)

Query: 150 RPA----QFTCKYEGNPVKTISWMKDGKP-VPDHNEPVFR---------IDSVRKEDKGM 195
            PA    +  C   GNP  TI+W+KDGKP   +H    ++         ++SV   D G 
Sbjct: 6   VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65

Query: 196 YQCVIRNEQESAQASGELK 214
           Y C++ N+  S   + ++ 
Sbjct: 66  YTCIVENKYGSINHTYKVD 84

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 154 FTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
           F C+  G P  T+ W+K+G         K V +HN  V     + K D+G YQC+  N+ 
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDV 60

Query: 205 ESAQASGEL 213
            + QA  +L
Sbjct: 61  GNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQC 198
               +F C   GNP  T+ W+K+GK    +H    +++         +SV   DKG Y C
Sbjct: 9   ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 68

Query: 199 VIRNEQESAQASGEL 213
           V+ NE  S   +  L
Sbjct: 69  VVENEYGSINHTYHL 83

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRK 190
           +P   T+  G  A+F+C  +G P  T++WM++G+ +             +  F I  V+ 
Sbjct: 9   KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM 68

Query: 191 EDKGMYQCVIRNEQESAQA 209
            D+G Y  V+ N +   +A
Sbjct: 69  SDEGNYTVVVENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGK-----PVPDHNEPVFRIDSVRKEDKG 194
               ++  G     TC  EG P   TISW ++G           +     + SV  ED G
Sbjct: 7   SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSG 66

Query: 195 MYQCVIRN 202
            Y CV  N
Sbjct: 67  TYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 152 AQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQES 206
            +F C+  G+PV T+ W K+   +P       ++   +I +V   D+G Y C   N    
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 207 AQASGEL 213
            +AS  L
Sbjct: 61  IEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 153 QFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
              C  EG P   ISW+K G  +P      ++     +ID+V +ED G Y+C   N   S
Sbjct: 2   LLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS 61

Query: 207 AQ 208
           A+
Sbjct: 62  AR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-PVFRIDS-------VRKEDKGMYQCVI 200
           G   +  C+ EG P  TI+W  +G P+ +    P  R+D        V+  D  +YQC  
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 201 RNEQESAQA 209
            N      A
Sbjct: 61  SNVHGYLLA 69

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 51  SSRKVAVPLND---RVKQVS-GTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTV 102
           S RK   PLN    RV+ V  G L+I EA+  D G Y CV  N VG  ES    L+V
Sbjct: 30  SWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 133 PPLAAGVEPTVQ-TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV-FRIDS--- 187
           PP     +  V  T + G+     C  +G P  T++W KDG+P+    E   F  D    
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEM 60

Query: 188 ----VRKEDKGMYQCVIRNEQESAQASGELKL 215
               V K D+  Y C+  N+    +A   LK+
Sbjct: 61  TILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 21/43 (48%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
           PP I E  SD  ++ G      C A G PTP I W  +G+ L 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
            KC ASGNP P I+W  DGK      R
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFKKEHR 40

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 27 KPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEAKVEDS 80
           P G +  L C A  N      W K  +G   K    +   +V++   TLI++     DS
Sbjct: 6  VPAGSTVRLKCPASGNPRPTITWLK--DGKPFKKEHRIGGYKVRKKKWTLILESVVPSDS 63

Query: 81 GKYLCVVNNSVG 92
          GKY C+V N  G
Sbjct: 64 GKYTCIVENKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 152 AQFTCKYEGNPVKTISWMKDG------------KPVPDHNEPVFRIDSVRKEDKGMYQCV 199
           A+  C   G+P   I+W KDG              +P+  + VF I  V+ ED G+Y C 
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCT 58

Query: 200 IRNEQESAQASGEL 213
            +N   S  A+  L
Sbjct: 59  AQNTAGSISANATL 72

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 160 GNPVKTISWMK-DGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRN 202
           GNPV  I W K DG          +  V +I +++ ED+G Y+C   N
Sbjct: 27  GNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 242 KCIASGNPTPEISWYLDGKKLVNAE 266
           KC+ASGNP P+I+W  D K L   E
Sbjct: 15  KCVASGNPRPDITWLKDNKPLTPTE 39

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
           F C  +G+P P +SW+ DG+ L +++R
Sbjct: 20  FTCTVTGDPDPTVSWFKDGQPLRSSDR 46

Length = 90

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 140 EPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKG 194
           EP  Q +  G    F C+ +  +P  T+ W + G  +P    D N  +  I +V+  D G
Sbjct: 7   EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNG-ILTIRNVQLSDAG 65

Query: 195 MYQCVIRNEQESAQASGEL 213
            Y C   N  ++ +A+  L
Sbjct: 66  TYVCTGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 30 GESFALLC----EAQENMWF-----KFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
          GES   LC    E ++  WF     K +      V      +   V  TL I  A +ED+
Sbjct: 15 GESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVV-----QNDDVRSTLTIYNANIEDA 69

Query: 81 GKYLCVVNNSVGGESVETV 99
          G Y CV  ++ G ES  TV
Sbjct: 70 GIYKCVATDAKGTESEATV 88

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 241 FKCIASGNPTPEISWYLDGKKL 262
             C A GNP P I+W  DGK L
Sbjct: 7   LTCPAEGNPVPNITWLKDGKPL 28

Length = 63

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 153 QFTCKYEGNPVKTISWMKDGKPVPD----HNEP--VFRIDSVRKEDKGMYQCVIRNEQES 206
           Q  C  +G+P  TI+W KDG  V +    H  P     I  V   D+G Y+CV RN    
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY 61

Query: 207 AQASGEL 213
           A  S  L
Sbjct: 62  ASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 12/65 (18%)

Query: 35 LLCEAQEN-----MWFK-FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVV 87
          +LC A  N      WFK F+      V    N R+KQ+ SG L I+ ++  D GKY CV 
Sbjct: 3  MLCAASGNPDPEITWFKDFL-----PVDTTSNGRIKQLRSGALQIENSEESDQGKYECVA 57

Query: 88 NNSVG 92
           NS G
Sbjct: 58 TNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPV-----FRIDSVRKEDKGMYQC 198
           G+   F C+ +G P   I+W K G  +  D    V      RI  V   D+G Y+C
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYEC 57

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--DH--------NEPVFRIDSVRK 190
           P V TI  G+    TC   G+P   +SW+K+ + +   DH              I  V  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 191 EDKGMYQCVIRNE 203
           ED G Y  V++N+
Sbjct: 68  EDSGKYGIVVKNK 80

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 152 AQFTCKYEGNPVKTISWMKDGKPV----PDH-----NEPVFRIDSVRKEDKGMYQCVIRN 202
           A   C  EG P+  ++W+K+G  +            N     I +VR ED G Y C+ +N
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKN 60

Query: 203 E 203
           E
Sbjct: 61  E 61

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVPDHNEPVFRIDSVRK-- 190
           L   + P+   I  G    F C+  G P K ISW      K V      V + D VR   
Sbjct: 1   LQVDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTL 59

Query: 191 -------EDKGMYQCVIRNEQESAQ 208
                  ED G+Y+CV  + + +  
Sbjct: 60  TIYNANIEDAGIYKCVATDAKGTES 84

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 57  VPLNDRVKQVS-GTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTV 102
             L  R++ +S G+L+IK    EDSG YLC V+N VG + S   VLTV
Sbjct: 32  CCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            PV+  S +   +  G +    C A GNP P  +WY DG  L
Sbjct: 1   KPVLTPSPT--VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPL 40

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 156 CKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
           C  EG P   + W +   P+        +N    ++D+V + D G Y C   N + SA+
Sbjct: 5   CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR 63

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCVIR 201
           G   +  C   GNP   I+W+KD KP+           +    + +++ ED G Y C + 
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 202 N 202
           N
Sbjct: 69  N 69

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIRN 202
           G+     C   GNPV  I W K  +P+P   E      V +I +++ ED+G Y+C   N
Sbjct: 16  GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV---------FRIDSVRKEDKGMYQCV 199
           G   +FTC   G P   I+W  +   VPD                I  V++ D+G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 200 IRNEQ 204
             N +
Sbjct: 61  AINTR 65

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 156 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
           CK +  P  TISW K  + +         PD +     I +V K D+G Y C   N    
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSSRICIWPDGS---LEILNVTKSDEGKYTCFAENFFGK 64

Query: 207 AQASGEL 213
           A ++G L
Sbjct: 65  ANSTGSL 71

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143233 cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 43 MWFKFIEGSSRKVAVPLND--RVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
           W+K    S  K  +P  +  R+ Q    L    A +EDSG Y CVV NS
Sbjct: 37 TWYK----SDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNS 82

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 94

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 241 FKCIASGNPTPEISWYLDGKKLVN 264
             C+ASG P P I+W  +GK L +
Sbjct: 3   LTCLASGPPPPTITWLKNGKPLPS 26

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 27 KPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
          +P G S  L C A  N      W K     ++ +        ++   TL +K  K EDSG
Sbjct: 6  RPVGSSVRLKCVASGNPRPDITWLK----DNKPLTPTEIGESRKKKWTLSLKNLKPEDSG 61

Query: 82 KYLCVVNNSVG 92
          KY C V+N  G
Sbjct: 62 KYTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           P  I   F D     G N   +C A GNP P I W
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRW 35

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 30  GESFALLCEAQENMW----FKF-IEGSSRKVAVPLNDRVKQV-----SGTLIIKEAKVED 79
           GE+  L C     +     F++   G  R     +  R         S TL I  A ++D
Sbjct: 1   GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKD 60

Query: 80  SGKYLCVVNNSVGGESVETVLTVT 103
           SG Y C  ++    +   T + + 
Sbjct: 61  SGTYTCAASSGTMDQKESTKVNIH 84

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. This group also contains alpha-type platelet-derived growth factor receptor precursor (PDGFR)-alpha (CD140a), and PDGFR-beta (CD140b). PDGFRs alpha and beta have an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion that has protein tyrosine kinase activity. Length = 84

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 60 NDRVKQVSGTLIIKEA-KVEDSGKYLCVVNNSVG 92
          + R   V G L+I    K +D+G+Y C+ +N VG
Sbjct: 50 DSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101
           G L I++  V D G+Y CV  N++G  SV  VL+
Sbjct: 36  GYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 15/61 (24%), Positives = 20/61 (32%)

Query: 29 GGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
           G    L C A+       I           +  +     TL +     EDSG Y CV +
Sbjct: 14 SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVAS 73

Query: 89 N 89
          N
Sbjct: 74 N 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 152 AQFTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQCV 199
              TC   G P   ++W K+GK +        D N        I +V  ED G Y CV
Sbjct: 4   VTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPV---PDHNEPVFRID-------SVRKEDKGMYQC 198
           G      C+  GNP  +ISW+ +G P+   P   +P  ++D        V++    +YQC
Sbjct: 1   GEDGTLICRANGNPKPSISWLTNGVPIEIAPT--DPSRKVDGDTIIFSKVQERSSAVYQC 58

Query: 199 VIRNE 203
              NE
Sbjct: 59  NASNE 63

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG3513|consensus	1051		99.97
KOG3513|consensus	1051		99.97
KOG4194|consensus	873		99.97
KOG4221|consensus	1381		99.95
PHA02785	326	IL-beta-binding protein; Provisional	99.94
KOG4222|consensus	1281		99.91
KOG4221|consensus	1381		99.88
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
KOG4222|consensus	1281		99.85
KOG4194|consensus	873		99.85
PHA02785	326	IL-beta-binding protein; Provisional	99.8
PHA02826	227	IL-1 receptor-like protein; Provisional	99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.67
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.62
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.61
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.61
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.59
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.59
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.59
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.58
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.58
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.57
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.57
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.56
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.55
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.54
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.54
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.54
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.53
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.53
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.53
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.52
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.51
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.51
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.51
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.51
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.51
KOG3515|consensus	741		99.5
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.5
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.5
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.49
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.49
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.49
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.49
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.49
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.49
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.48
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.48
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.48
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.48
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.47
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.47
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.47
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.46
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.46
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.46
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.46
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.45
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.45
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.44
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.44
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.44
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.44
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.44
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.43
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.43
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.43
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.43
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.42
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.42
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.42
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.41
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.41
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.4
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.4
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.4
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.4
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.4
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.39
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.39
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.39
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.38
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.38
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.38
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.37
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.37
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.37
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.36
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.36
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.36
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.36
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.35
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.35
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.35
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.35
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.34
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.34
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.34
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.34
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.33
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.33
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.32
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.32
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.32
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.31
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.31
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.31
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.3
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.3
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.29
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.29
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.29
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.29
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.29
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.28
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.28
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.28
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.28
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.28
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.28
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.26
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.26
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.25
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.25
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.25
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.25
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.25
PHA03376	221	BARF1; Provisional	99.24
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.24
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.24
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.24
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.24
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.24
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.23
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.23
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.23
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.23
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.22
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.22
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.22
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.22
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.21
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.2
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.2
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.2
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.19
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.19
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.19
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.19
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.17
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.17
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.17
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.16
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.16
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.14
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.11
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.1
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.1
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.09
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.08
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.07
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.07
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.07
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.06
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.05
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.05
PHA03376	221	BARF1; Provisional	99.04
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.04
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.02
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.02
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.02
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.02
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.01
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.01
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.0
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.0
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.99
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.99
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.98
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.98
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.97
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.97
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.96
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.96
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.95
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.95
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.94
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.94
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.94
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.94
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.93
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.91
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.91
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.91
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.91
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.9
KOG3515|consensus	741		98.89
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.89
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.88
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.88
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.88
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.87
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.86
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.86
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.86
smart00409	86	IG Immunoglobulin.	98.86
smart00409	86	IG Immunoglobulin.	98.86
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.86
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.85
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.85
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.85
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.84
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.84
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.83
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.82
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.8
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.79
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.79
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.79
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.78
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.78
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.75
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.75
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.72
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.71
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.7
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.69
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.68
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.66
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.65
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.65
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.65
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.64
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.63
PHA03270	466	envelope glycoprotein C; Provisional	98.62
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.61
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.6
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.6
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.6
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.59
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.58
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.57
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.56
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.56
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.55
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.55
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.54
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.54
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.54
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.51
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.5
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.5
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.46
PHA03273	486	envelope glycoprotein C; Provisional	98.43
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.41
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.39
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.38
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.38
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.38
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.38
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.37
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.37
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.36
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.34
PHA03269	566	envelope glycoprotein C; Provisional	98.33
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.33
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.32
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.31
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.3
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.29
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.26
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.26
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.24
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.23
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.23
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.23
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.2
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.19
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.18
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.18
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.16
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.16
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.15
PHA03271	490	envelope glycoprotein C; Provisional	98.15
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.15
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.14
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.12
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.06
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.04
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.03
smart00407	75	IGc1 Immunoglobulin C-Type.	98.0
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.99
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.98
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.96
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.96
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.94
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.91
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.89
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.88
smart00406	81	IGv Immunoglobulin V-Type.	97.88
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.88
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.86
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.83
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.83
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.82
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.8
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.78
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.78
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.77
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.77
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.76
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.75
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.75
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.7
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.69
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.68
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.67
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.67
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.66
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.65
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.64
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.62
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.61
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.6
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.6
PHA02982	251	hypothetical protein; Provisional	97.59
PHA02633	63	hypothetical protein; Provisional	97.59
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.59
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.56
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.56
smart00407	75	IGc1 Immunoglobulin C-Type.	97.55
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.55
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.53
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.53
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.52
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.51
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.51
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.46
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.43
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.43
PHA02633	63	hypothetical protein; Provisional	97.39
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.38
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.36
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.35
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.34
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.33
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.31
smart00406	81	IGv Immunoglobulin V-Type.	97.27
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.27
KOG1480|consensus	909		97.11
PHA03270	466	envelope glycoprotein C; Provisional	97.11
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.06
PHA03271	490	envelope glycoprotein C; Provisional	96.94
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.94
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.9
PHA03273	486	envelope glycoprotein C; Provisional	96.89
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.86
PHA03269	566	envelope glycoprotein C; Provisional	96.78
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.61
PHA02982	251	hypothetical protein; Provisional	96.55
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.37
PHA03042	286	CD47-like protein; Provisional	96.02
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.99
PHA03042	286	CD47-like protein; Provisional	95.34
PHA03282	540	envelope glycoprotein E; Provisional	95.12
KOG4597|consensus	560		95.09
PHA02865	338	MHC-like TNF binding protein; Provisional	94.79
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.43
KOG0613|consensus	1205		94.4
KOG4597|consensus	560		93.53
KOG1480|consensus	909		93.32
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	92.91
PHA03283	542	envelope glycoprotein E; Provisional	92.65
PHA02865	338	MHC-like TNF binding protein; Provisional	91.99
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.08
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.75
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	90.71
PHA03052	69	Hypothetical protein; Provisional	90.64
PHA03052	69	Hypothetical protein; Provisional	90.6
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	89.88
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	88.99
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	88.11
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	87.99
PHA03189	348	UL14 tegument protein; Provisional	87.66
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	86.38
PHA03286	492	envelope glycoprotein E; Provisional	84.79
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	84.22
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	83.2
PRK14081	667	triple tyrosine motif-containing protein; Provisio	81.4
PHA03112	141	IL-18 binding protein; Provisional	81.29
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	81.29

>KOG3513|consensus

Probab=99.97  E-value=7.3e-30  Score=216.14  Aligned_cols=219  Identities=27%  Similarity=0.438  Sum_probs=185.3

Q ss_pred             cccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE--EEEeeEEEEeecccCCCe
Q psy3045           9 VGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV--KQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus         9 ~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G   81 (267)
                      ....+|.|..... .......|+.|.|.|-+.|     +.|.|.+..       ....+.  ...+..|.|.+++.+|+|
T Consensus       236 ~~~~~P~i~~~~p-~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~-------~~~~r~~~~~~~~vL~I~nv~~~D~G  307 (1051)
T KOG3513|consen  236 MREYAPKILVPFP-ETETALKGQSVKLECFALGNPTPQIKWRKVDGK-------PPPRRATYSNYGKVLKIPNVQYEDAG  307 (1051)
T ss_pred             ccccCCccccCCC-CcccccCCCeEEEEEEecCCCCCcEEEEeCCCC-------CCCcceeeeccccEEEecccCcCCCe
Confidence            4455788877764 4788899999999999999     999996321       233333  334568999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      .|+|.+.|..|.......+.|..+|.....++..                             .+..|+++.+.|.+.|.
T Consensus       308 ~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~-----------------------------~~~~gs~v~~eC~a~g~  358 (1051)
T KOG3513|consen  308 EYECIAENSRGSATHSGHVTVYAPPYWLQKPQDT-----------------------------EADTGSNVTLECKASGK  358 (1051)
T ss_pred             EEEEEEecccccceeeEEEEEecCchhhccccee-----------------------------EecCCCCeEEEEEecCC
Confidence            9999999999999999999999988877766655                             78889999999999999


Q ss_pred             CCceEEEEECCccCCCCC--------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCcee--
Q psy3045         162 PVKTISWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE--  231 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~~--------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~--  231 (267)
                      |.|.+.|++||.++....        ...|.|.++...|+|.|.|.|+|..|...+.+.|.|..  .+|.+...+...  
T Consensus       359 P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a--~~P~f~~~p~~~~~  436 (1051)
T KOG3513|consen  359 PNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA--SAPVFPLNPVERKV  436 (1051)
T ss_pred             CCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc--cCCCCCCCccceEE
Confidence            999999999999987432        47899999999999999999999999999999999985  567777766554  


Q ss_pred             EEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       232 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      .+..|.++.|.|...+.|.|.+.|.++++.+..+.
T Consensus       437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~  471 (1051)
T KOG3513|consen  437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSG  471 (1051)
T ss_pred             EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCc
Confidence            56789999999999999999999999998655544

>KOG3513|consensus

Probab=99.97  E-value=4e-29  Score=211.71  Aligned_cols=220  Identities=25%  Similarity=0.424  Sum_probs=184.5

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+|.+...+  .+..+..|++++|.|.+.+     +.|++++....   ......+.....+.|+|.+++..|+|.|+|
T Consensus       329 ~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~---~~~r~~~~~i~~g~L~is~v~~~dsg~YQC  403 (1051)
T KOG3513|consen  329 YAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE---PAERDPRYKIDDGTLIISNVQESDSGVYQC  403 (1051)
T ss_pred             ecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC---ccCCCcceEEeCCEEEEEecccccCeEEEe
Confidence            4579999988  8999999999999999999     99999632211   112233477788999999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          86 VVNNSVGGESVETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      .|+|.+|.....+.|.|... |.+...+...                           ...+..|..+.|.|...+.|.+
T Consensus       404 ~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~---------------------------~~~a~~g~~v~i~C~~~asP~p  456 (1051)
T KOG3513|consen  404 IAENKYGTIYANAELKVLASAPVFPLNPVER---------------------------KVMAVVGGTVTIDCKPFASPKP  456 (1051)
T ss_pred             eeecccceEeeeeEEEEEccCCCCCCCccce---------------------------EEEEEeCCeEEEeeccCCCCcc
Confidence            99999999999999999874 5544444433                           2267779999999999999999


Q ss_pred             eEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCc
Q psy3045         165 TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN  238 (267)
Q Consensus       165 ~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~  238 (267)
                      .+.|.+++..+..+      .+++|.|.+++.+|+|.|+|.|+|..|.++....|.|.   .++.+...|....+..|+.
T Consensus       457 ~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk---d~tri~~~P~~~~v~~g~~  533 (1051)
T KOG3513|consen  457 KVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK---DATRITLAPSNTDVKVGES  533 (1051)
T ss_pred             eEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe---cCceEEeccchhhhccCce
Confidence            99999988854433      46899999999999999999999999999999999997   6888888898889999999


Q ss_pred             EEEEEEeecCCC--CcEEEEECCEEcCCC
Q psy3045         239 YYFKCIASGNPT--PEISWYLDGKKLVNA  265 (267)
Q Consensus       239 ~~l~C~~~~~p~--~~i~W~~~~~~l~~~  265 (267)
                      ++|.|++.-.+.  ..|.|++||..+...
T Consensus       534 v~l~Ce~shD~~ld~~f~W~~nG~~id~~  562 (1051)
T KOG3513|consen  534 VTLTCEASHDPSLDITFTWKKNGRPIDFN  562 (1051)
T ss_pred             EEEEeecccCCCcceEEEEEECCEEhhcc
Confidence            999999975554  489999999987643

>KOG4194|consensus

Probab=99.97  E-value=3.1e-29  Score=199.35  Aligned_cols=218  Identities=28%  Similarity=0.502  Sum_probs=179.7

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccC------CceEE------EEeeEEEEe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPL------NDRVK------QVSGTLIIK   73 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~------~~~~~------~~~~~l~i~   73 (267)
                      .|+|...|  .......|++++|+|.+.+       +.|.++.+.... .....      ..|..      ...+.|++.
T Consensus       503 kpqI~~qP--e~~~al~g~nirftC~a~sssasplsi~WR~dnevq~r-v~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  503 KPQIVTQP--ETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPR-VDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CcceecCc--hHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcc-cchhcchhhhhhhccCccchhhhhhheeeee
Confidence            48888877  8899999999999999988       999997542211 11111      11100      112469999


Q ss_pred             ecccCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          74 EAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      +++-.|+|.|+|.++|..|. .+..+.++|...|.+...|...                             .+..|+..
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dl-----------------------------tl~tg~mA  630 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDL-----------------------------TLRTGQMA  630 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccc-----------------------------eeecccce
Confidence            99999999999999999998 5788899999888877777665                             77789999


Q ss_pred             EEEeEeCCCCCceEEEEECCcc-CCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCC
Q psy3045         153 QFTCKYEGNPVKTISWMKDGKP-VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP  222 (267)
Q Consensus       153 ~l~C~~~~~p~~~~~W~~~~~~-~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p  222 (267)
                      .|.|.+.|.|.|+|.|.|+|.. ++.         .+...+-|.+++.+|.|.|+|.|.|.+|+.+..+.+.|.   ..|
T Consensus       631 rl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~---e~p  707 (873)
T KOG4194|consen  631 RLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL---ETP  707 (873)
T ss_pred             eeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe---cCC
Confidence            9999999999999999998765 442         245678899999999999999999999999999999886   577


Q ss_pred             eeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEEcCCC
Q psy3045         223 VIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLVNA  265 (267)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~l~~~  265 (267)
                      .+..+..++.+..|+++.|.|.+.+.|+ |++.|+|++++|.-.
T Consensus       708 ~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t  751 (873)
T KOG4194|consen  708 SFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT  751 (873)
T ss_pred             cccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEe
Confidence            8888888899999999999999999888 999999999887543

>KOG4221|consensus

Probab=99.95  E-value=3.9e-26  Score=193.63  Aligned_cols=220  Identities=25%  Similarity=0.458  Sum_probs=175.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+.|...+  .+.++..|+++.|.|.+.+     +.|.++..      .+..+.|+. ..++.|.|..++..|.|.|+|.
T Consensus       140 ~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~------pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~  211 (1381)
T KOG4221|consen  140 LADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ------PLPLDSRVIVLPSGALEISGLQPSDTGEYRCV  211 (1381)
T ss_pred             cCccccCc--cceeEecCCcEEEEEEEcCccCceeEEecccc------cccCCCcEEEcCCCcEEecccccCCCceEEEE
Confidence            46677777  7899999999999999998     89999622      344455554 4678999999999999999999


Q ss_pred             EEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          87 VNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        87 ~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      +++.... .+..+.|+|...+.......                       +...+....+..|+.+.|.|.+.+.|.|.
T Consensus       212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~-----------------------fl~~p~~~~v~~g~~v~leCvvs~~p~p~  268 (1381)
T KOG4221|consen  212 VTGGASQRTSNEAELTVLSDPGALNKLV-----------------------FLDEPSNAVVVEGDDVVLECVVSGVPKPS  268 (1381)
T ss_pred             EecCCcCCccceeEEEecCCccccccee-----------------------eecCCCccccccCCcEEEEEEecCCCCCc
Confidence            9987654 46777777773222111111                       12234455788899999999999999999


Q ss_pred             EEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCc
Q psy3045         166 ISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN  238 (267)
Q Consensus       166 ~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~  238 (267)
                      +.|.+|+..+.-+       ....|.|.+++..|+|.|+|.|.|......+...+.|.   .+|.+...+......++..
T Consensus       269 v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---a~P~~~~~p~~l~A~e~~d  345 (1381)
T KOG4221|consen  269 VKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---APPGFTKAPTTLVAHESMD  345 (1381)
T ss_pred             eEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---cCCCCCCCCcceeeeeccc
Confidence            9999999988644       35678899999999999999999976666777777776   5788888888877888999


Q ss_pred             EEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         239 YYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       239 ~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.|.|.+.|.|.|.+.|||||..+..++
T Consensus       346 ie~ec~~~g~p~p~v~w~kNgd~~ipsd  373 (1381)
T KOG4221|consen  346 IEFECPVSGKPIPTVRWYKNGDRIIPSD  373 (1381)
T ss_pred             eeEeCCCCCCCcceEEEEecCcccCccc
Confidence            9999999999999999999998876543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.94  E-value=7.5e-25  Score=171.73  Aligned_cols=205  Identities=20%  Similarity=0.362  Sum_probs=145.1

Q ss_pred             eeEEecCCCeEEEEEEe-----cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEA-----QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-----~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ....+.+|+.+.|.|.+     .+     +.|+|++.....        .... .+..|.|.++..+|+|.|+|.+.|..
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--------~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--------IIPIDNGSNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--------EEEccCCceEEEcccCcccCeEEEEEEECCC
Confidence            34567799999999997     33     999996422111        1111 22358899999999999999999998


Q ss_pred             CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE-----eCCCCCceE
Q psy3045          92 GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-----YEGNPVKTI  166 (267)
Q Consensus        92 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~-----~~~~p~~~~  166 (267)
                      +.....+.|.|...........                           .....+.+|..+.|.|.     ..+.|.+.+
T Consensus       106 g~~~~s~~L~V~~~~~~~~~~~---------------------------~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i  158 (326)
T PHA02785        106 YCDMMSLNLTIVSVSESNIDLI---------------------------SYPQIVNERSTGEMVCPNINAFIASNVNADI  158 (326)
T ss_pred             cceEEEEEEEEEecCCCcccee---------------------------eccceecccCcEEEECCChhhcccCCCCceE
Confidence            8877778888875432111110                           01124567899999997     235688899


Q ss_pred             EEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE----EEEEEEecccCCCeeecCCceeEEecCC
Q psy3045         167 SWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA----SGELKLGGRFDPPVIKESFSDETLNPGP  237 (267)
Q Consensus       167 ~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~----~~~l~v~~~~~~p~~~~~~~~~~~~~g~  237 (267)
                      .|+++.. +..     ..+..|.|.+++.+|.|.|+|.+.|..+....    ...+.|.....||.+. .+....+..|+
T Consensus       159 ~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~~~~~~G~  236 (326)
T PHA02785        159 IWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEGVVTSIGS  236 (326)
T ss_pred             EEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCcEEecCCC
Confidence            9988653 222     12468999999999999999999998776543    2334444333455543 34566778899


Q ss_pred             cEEEEEEeecCCCC---cEEEEECCEEcCC
Q psy3045         238 NYYFKCIASGNPTP---EISWYLDGKKLVN  264 (267)
Q Consensus       238 ~~~l~C~~~~~p~~---~i~W~~~~~~l~~  264 (267)
                      .+.|.|.+.|.|++   .+.|++||+.|.+
T Consensus       237 ~v~L~C~a~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        237 NLTIACRVSLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             cEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence            99999999998874   8999999998854

>KOG4222|consensus

Probab=99.91  E-value=1.7e-23  Score=176.90  Aligned_cols=212  Identities=27%  Similarity=0.470  Sum_probs=179.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +-.|.+.+  ++..+..|+.+.|.|.-..      +.|.|+++...   ......+....++.|.|.++...|+|+|.|.
T Consensus       131 rddfrv~p--rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~---~~~~~~~~lisgG~LlIsnvrksD~GtY~CV  205 (1281)
T KOG4222|consen  131 RDDFRVSP--RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD---HYDVPIIALISGGNLLISNVRKSDEGTYACV  205 (1281)
T ss_pred             chhcccCc--ccccccccceeEEeccCCCCCCCCcceeecCCCccc---cccceeEEEecCCcEEEeccccCCCceeeee
Confidence            34566666  6789999999999998666      99999744322   1112233335677899999999999999999


Q ss_pred             EEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          87 VNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        87 ~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      ++|..|. .+...+|.|.+.+.+...+...                             .+..|..+.+.|.+.|.|.|.
T Consensus       206 atNmvG~ReS~~A~lsv~e~P~f~~rp~~~-----------------------------~v~~g~~~~f~c~v~GdP~P~  256 (1281)
T KOG4222|consen  206 ATNMVGERESIPARLSVQEKPWFWKRPKDL-----------------------------AVLVGAAAEFDCRVGGDPQPT  256 (1281)
T ss_pred             ecccccccccccceeeeccCCccccccccc-----------------------------eeecccccccccccCCCCCCc
Confidence            9999998 6788899999988877776655                             788899999999999999999


Q ss_pred             EEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcE
Q psy3045         166 ISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY  239 (267)
Q Consensus       166 ~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~  239 (267)
                      +.|-+++..++..      ++.+|.|..++..|.|+|.|.++|..|.......+.|+   .+|.+...+.+..+..|..+
T Consensus       257 Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~---apP~f~kkp~dq~v~lg~~v  333 (1281)
T KOG4222|consen  257 VRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ---APPSFGKKPRDQKVALGGTV  333 (1281)
T ss_pred             eeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe---cCcccccccCccccccCceE
Confidence            9999988777643      45788899999999999999999999999999999997   68899998888899999999


Q ss_pred             EEEEEeecCCCCcEEEEECCEE
Q psy3045         240 YFKCIASGNPTPEISWYLDGKK  261 (267)
Q Consensus       240 ~l~C~~~~~p~~~i~W~~~~~~  261 (267)
                      +|.|.+.|+|+|.+.|.+.|..
T Consensus       334 t~pc~~~gnP~PavfW~keg~q  355 (1281)
T KOG4222|consen  334 TFPCETLGNPPPAVFWLKEGSQ  355 (1281)
T ss_pred             EeeeecCCCCCcceEEeccCcc
Confidence            9999999999999999988754

>KOG4221|consensus

Probab=99.88  E-value=6e-21  Score=162.64  Aligned_cols=217  Identities=24%  Similarity=0.439  Sum_probs=161.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCce-EEEEeeEEEEeeccc-----C
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDR-VKQVSGTLIIKEAKV-----E   78 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~-----~   78 (267)
                      .+-.|...|  .+  +.+|.++.|.|....       +.|.+|+...    ...++.+ ....+++|.|.++..     .
T Consensus        40 ~~~~f~~ep--~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l----~e~~d~~~~~LsNgSl~i~~v~~~kh~~~  111 (1381)
T KOG4221|consen   40 TPLQFLLEP--SD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQL----NEVYDDRRQLLSNGSLYISSVLASKHNKV  111 (1381)
T ss_pred             CcceEEecc--cc--cccccceEEeccccccCCCCeeEEEccCchhh----hhhhhhHHhhccCCceeEeeecccccccc
Confidence            345677776  33  389999999999776       8999863321    1222233 334677899888877     7


Q ss_pred             CCeeEEEEEEcC-CCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          79 DSGKYLCVVNNS-VGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        79 d~G~Y~C~~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      |+|.|+|.++-. .|. .+..+.+.+.....+...+...                             .+..|+++.|.|
T Consensus       112 ~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~-----------------------------t~~~g~ta~f~c  162 (1381)
T KOG4221|consen  112 DEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPEST-----------------------------TLLYGQTALFSC  162 (1381)
T ss_pred             cCceEEEEEEccccceeecceEEEEecccCccccCccce-----------------------------eEecCCcEEEEE
Confidence            899999999865 444 4666677776655555444443                             788899999999


Q ss_pred             EeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEeccc---CCCeeec
Q psy3045         157 KYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRF---DPPVIKE  226 (267)
Q Consensus       157 ~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~~~---~~p~~~~  226 (267)
                      .+.+.|.+.+.|.+|..++..+      .+..|.|..+...|.|.|+|.+++...... ....|.+....   ..-.|..
T Consensus       163 ~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~  242 (1381)
T KOG4221|consen  163 EVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLD  242 (1381)
T ss_pred             EEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeec
Confidence            9999888899999999987654      357899999999999999999998764432 24555554111   1123455


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .+....+.+|+.+.|+|.+.|.|.|.|.|++||+.|..+
T Consensus       243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d  281 (1381)
T KOG4221|consen  243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD  281 (1381)
T ss_pred             CCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence            667778899999999999999999999999999988755

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=9.5e-21  Score=139.97  Aligned_cols=148  Identities=21%  Similarity=0.326  Sum_probs=107.1

Q ss_pred             eeEEecCCCeEEEEEEec-------------c---eeeeecccCccee----c--ccc-CCceEEEEeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQ-------------E---NMWFKFIEGSSRK----V--AVP-LNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-------------~---~~W~~~~~~~~~~----~--~~~-~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      ..+.+.+|++|.|.|.+.             .   +.|+|++......    .  ... ...+....+.+|+|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            568899999999999951             2   9999963210000    0  000 011222234689999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      +|.|+|.+.|..+.....+.|.|....      .                             ...+.+|+.+.|.|.+.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~------~-----------------------------~~~~~~G~~v~L~C~~~  154 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT------I-----------------------------NYQFNSGKDSKLHCYGT  154 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC------c-----------------------------cceEecCCCEEEEeeCC
Confidence            999999999988777777777774211      0                             11456799999999975


Q ss_pred             C-----CCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         160 G-----NPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       160 ~-----~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +     .|.|.++|+|++.++...       ....|.|.+++.+|+|.|+|.|.....
T Consensus       155 ~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        155 DGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            3     357899999999987643       345899999999999999999987643

>KOG4222|consensus

Probab=99.85  E-value=4.9e-21  Score=162.20  Aligned_cols=222  Identities=27%  Similarity=0.450  Sum_probs=177.0

Q ss_pred             ccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCee
Q psy3045           8 PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus         8 ~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +...++|.|...+  ....+.+|+.+.+.|.+.+     +.|.+++....     ....++..++.+|.|.+++..|+|.
T Consensus       220 lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P-----~~ry~i~~d~qtl~i~r~tp~deg~  292 (1281)
T KOG4222|consen  220 LSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP-----RSRYSILDDTQTLRIDRVTPTDEGT  292 (1281)
T ss_pred             eeeccCCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCC-----ccceeeeeccccccccccCCCcccc
Confidence            4446689999998  8999999999999999999     99988532211     1233344556799999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |.|.+.|..|.......++|..++.+...+...                             .+..|..++|.|.+.|.|
T Consensus       293 y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq-----------------------------~v~lg~~vt~pc~~~gnP  343 (1281)
T KOG4222|consen  293 YVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ-----------------------------KVALGGTVTFPCETLGNP  343 (1281)
T ss_pred             eeeeccccccccccccceEEecCcccccccCcc-----------------------------ccccCceEEeeeecCCCC
Confidence            999999999999999999999988876665554                             777899999999999999


Q ss_pred             CceEEEEECCccCC--------C------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe---cc-cCCCee
Q psy3045         163 VKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG---GR-FDPPVI  224 (267)
Q Consensus       163 ~~~~~W~~~~~~~~--------~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~---~~-~~~p~~  224 (267)
                      ++.+.|.+.|...-        .      ....+|+|.++...|.|.|.|...+..+.......+.+.   .. ..+|.+
T Consensus       344 ~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i  423 (1281)
T KOG4222|consen  344 PPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPII  423 (1281)
T ss_pred             CcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCcee
Confidence            99999998764321        0      123689999999999999999976655544332222221   11 467788


Q ss_pred             ecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      ...+.++++..+..+.|.|.+.+.|-+.+.|+++|-.+...
T Consensus       424 ~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~  464 (1281)
T KOG4222|consen  424 EQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP  464 (1281)
T ss_pred             eecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence            88889999999999999999999999999999999776544

>KOG4194|consensus

Probab=99.85  E-value=4.8e-20  Score=147.53  Aligned_cols=176  Identities=23%  Similarity=0.371  Sum_probs=141.7

Q ss_pred             CcccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccC
Q psy3045           6 LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVE   78 (267)
Q Consensus         6 ~~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~   78 (267)
                      -++...+.|.|...|  .+.++..|+.+.|.|.++|     +.|.|++...   .+.--..|++.  ....+.|.++..+
T Consensus       605 ~KltV~~~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd---FPAA~eRRl~Vmpedd~f~Itnvk~e  679 (873)
T KOG4194|consen  605 AKLTVNQAPSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD---FPAARERRLHVMPEDDVFFITNVKIE  679 (873)
T ss_pred             eEEEeeccCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCC---CchhhhheeeecCCCCEEEEeccccc
Confidence            344556789999999  8999999999999999999     9999963211   11112334433  4567999999999


Q ss_pred             CCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe
Q psy3045          79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY  158 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  158 (267)
                      |.|.|+|.|.|..|+.+....|.|.+.|.+..+....                             .+..|+.+.|.|.+
T Consensus       680 D~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~-----------------------------~V~~get~vlqC~a  730 (873)
T KOG4194|consen  680 DQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQ-----------------------------LVVVGETLVLQCLA  730 (873)
T ss_pred             ccceeEEeeeccccceeeceEEEEecCCcccccccce-----------------------------EEEecceEEEEEec
Confidence            9999999999999999999999999988776665444                             77789999999999


Q ss_pred             CCCCC-ceEEEEECCccCCC-------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         159 EGNPV-KTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       159 ~~~p~-~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .+.|. |.+.|+|+++++.-       ..++-+++.....+|+|.|+|+..+..+.......+.+
T Consensus       731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~  795 (873)
T KOG4194|consen  731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV  795 (873)
T ss_pred             CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence            99886 99999999988742       34577888889999999999999998876665555544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.80  E-value=1e-17  Score=131.68  Aligned_cols=148  Identities=20%  Similarity=0.409  Sum_probs=103.5

Q ss_pred             eeEEecCCCeEEEEEEe-----cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEA-----QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-----~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .+..+.+|..+.|.|..     .+     ++|+++.  .     + ...++.. .++.|.|.+++.+|+|.|+|.+.|..
T Consensus       129 ~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~--~-----~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  200 (326)
T PHA02785        129 YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR--R-----L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIY  200 (326)
T ss_pred             ccceecccCcEEEECCChhhcccCCCCceEEEccCC--c-----c-CCcceEecCCCeEEEeecChhhCeEEEEEEEecc
Confidence            34567799999999972     12     9998741  1     1 2233332 35689999999999999999999988


Q ss_pred             CccEEE----EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC---c
Q psy3045          92 GGESVE----TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV---K  164 (267)
Q Consensus        92 ~~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~  164 (267)
                      +.....    +.|.|..+.   ..+..                        ..+....+..|+.+.|.|.+.+.|.   +
T Consensus       201 g~~~~~~t~~v~l~V~~~~---~pp~~------------------------~~p~~~~~~~G~~v~L~C~a~g~P~~~~~  253 (326)
T PHA02785        201 GDKTYNVTRIVKLEVRDRI---IPPTM------------------------QLPEGVVTSIGSNLTIACRVSLRPPTTDA  253 (326)
T ss_pred             CCEEEeEEEEEEEEEeccC---CCcee------------------------cCCCcEEecCCCcEEEEEEEECCCCCCCc
Confidence            765332    334443211   11100                        1123346777999999999998875   4


Q ss_pred             eEEEEECCccCCCCC----------------------CCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         165 TISWMKDGKPVPDHN----------------------EPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       165 ~~~W~~~~~~~~~~~----------------------~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+.|++||..+...+                      ...|.|.+++.+|.|.|+|.|.|..+
T Consensus       254 ~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        254 DVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             eEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence            899999998764210                      24689999999999999999999773

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.70  E-value=8.1e-16  Score=113.87  Aligned_cols=115  Identities=17%  Similarity=0.378  Sum_probs=87.9

Q ss_pred             eEEEecCCCEEEEeEeCCCC-----------CceEEEEECCccC-----------C-------CCCCCeEEeccCCCCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP-----------VKTISWMKDGKPV-----------P-------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p-----------~~~~~W~~~~~~~-----------~-------~~~~~~l~i~~~~~~d~  193 (267)
                      ...+.+|+++.|.|.+.+.+           .+++.|+|++...           .       ......|.|.+++.+|+
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            34788999999999986643           4589999987431           0       11246899999999999


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee-----cCCCCcEEEEECCEEcCCCC
Q psy3045         194 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-----GNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       194 g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~~~~l~~~~  266 (267)
                      |.|+|.|.|..+....+..|.|..   ++      .+..+.+|+.+.|.|.+.     +.|.|.|.|||||+.|..++
T Consensus       111 G~Y~C~a~N~~~~~~~~i~L~V~~---~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~  179 (227)
T PHA02826        111 GIYICTISSGNICEESTIRLTFDS---GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD  179 (227)
T ss_pred             EEEEEEEEECCcceEEEEEEEEec---CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence            999999999887777677666631   11      234567899999999986     34678999999999987554

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.68  E-value=8e-16  Score=99.19  Aligned_cols=82  Identities=28%  Similarity=0.439  Sum_probs=70.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+..|+.+.|.|.+.|.|.+.+.|+|++.++..+         ..+.|.|..+..+|+|.|+|.|.|..|....++
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~   86 (98)
T cd05762           7 PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV   86 (98)
T ss_pred             CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence            44558899999999999999999999999999988633         246799999999999999999999999999999


Q ss_pred             EEEEecccCCC
Q psy3045         212 ELKLGGRFDPP  222 (267)
Q Consensus       212 ~l~v~~~~~~p  222 (267)
                      .|.|.....||
T Consensus        87 ~l~V~~~P~pP   97 (98)
T cd05762          87 NLTVVDKPDPP   97 (98)
T ss_pred             EEEEecCCCCC
Confidence            99998654443

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.67  E-value=2.1e-15  Score=95.35  Aligned_cols=76  Identities=25%  Similarity=0.433  Sum_probs=65.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .+..|.|.++..+|+|.|+|.|.|..|....+..|.
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   86 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY   86 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            344568889999999999999999999999998877543     345799999999999999999999999988887776


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      |
T Consensus        87 V   87 (88)
T cd05851          87 V   87 (88)
T ss_pred             E
Confidence            5

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.63  E-value=4.4e-15  Score=95.72  Aligned_cols=86  Identities=28%  Similarity=0.418  Sum_probs=70.3

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~   84 (267)
                      |.|...+  .+..+..|+++.|.|.+.|     +.|+|++...      ....++..    ..+.|.|.++...|+|.|+
T Consensus         1 p~~~~~p--~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l------~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Yt   72 (98)
T cd05762           1 PQIIQFP--EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQI------QEGEGIKIENTENSSKLTITEGQQEHCGCYT   72 (98)
T ss_pred             CceEECC--cCEEEECCCEEEEEEEEcccCCCceEEEECCEEe------cCCCcEEEEecCCeeEEEECCCChhhCEEEE
Confidence            6777777  7899999999999999999     9999964322      11222222    3468999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccc
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.+.|..|.....+.|.|.+.|.
T Consensus        73 c~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          73 LEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEEEcCCCceeEEEEEEEecCCC
Confidence            99999999999999999998664

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.62  E-value=3e-15  Score=88.62  Aligned_cols=65  Identities=25%  Similarity=0.438  Sum_probs=56.7

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|.|.+.|.|.|.+.|+|||.++.. .....|.|..+..+|+|.|+|.|+|..|..+.+..+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47899999999999999999998853 345799999999999999999999999987777776653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.61  E-value=6.4e-15  Score=95.10  Aligned_cols=74  Identities=16%  Similarity=0.351  Sum_probs=64.3

Q ss_pred             eEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         143 VQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ...+.+|+++.|.|.+.| .|+|.+.|+|+|.++....              .+.|.|..+..+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            447889999999999999 7899999999999886321              2568999999999999999999999988


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.61  E-value=9.3e-15  Score=92.41  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=67.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      ||.|...+  .+..+.+|+++.|.|.+.|     +.|++++...      ....++...+..|.|.+++.+|+|.|+|.|
T Consensus         1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   72 (88)
T cd05851           1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPM------PATAEISMSGAVLKIFNIQPEDEGTYECEA   72 (88)
T ss_pred             CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC------CCCCEEecCCCEEEECcCChhhCEEEEEEE
Confidence            68888888  7899999999999999999     9999964321      112334444568999999999999999999


Q ss_pred             EcCCCccEEEEEEEE
Q psy3045          88 NNSVGGESVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V  102 (267)
                      .|..|.....+.|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd05851          73 ENIKGKDKHQARVYV   87 (88)
T ss_pred             EcCCCceEEEEEEEE
Confidence            999999888888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.59  E-value=4.8e-14  Score=97.42  Aligned_cols=108  Identities=17%  Similarity=0.380  Sum_probs=77.6

Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      +|+|.+++..|+|.|+|.+.+..+.....+.|.|..+|.....+...                             ....
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~-----------------------------~~~~   52 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKL-----------------------------VSMI   52 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCc-----------------------------eeec
Confidence            68999999999999999999888888888889888765543332211                             3336


Q ss_pred             CCCEEEEeEeCCC-CC-ceEEEEECCccCCC---------------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGN-PV-KTISWMKDGKPVPD---------------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~---------------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      |+.+.|.|.+.+. |. +++.|++++.....               ..+      +.|.+.....++...|+|.+.|...
T Consensus        53 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          53 EEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            8889999999986 54 58999998854211               111      3455554444556699999988753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=9e-15  Score=89.49  Aligned_cols=68  Identities=28%  Similarity=0.551  Sum_probs=59.2

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +|+.+.|.|.+.|.|.|.+.|++++..+...      ....|.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            4889999999999999999999999877532      3468999999999999999999999998888777653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.59  E-value=3.5e-14  Score=90.07  Aligned_cols=75  Identities=27%  Similarity=0.501  Sum_probs=64.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...     ....|.|.++..+|+|.|.|.|.|..|....+..|.|
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            44557889999999999999999999999988765432     4578999999999999999999999998887777765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.58  E-value=1.5e-14  Score=93.47  Aligned_cols=73  Identities=19%  Similarity=0.411  Sum_probs=64.3

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------------CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ..+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.               .+.|.|..+..+|+|.|+|.|.|..|...
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~   92 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS   92 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence            377789999999999999999999999999986432               25799999999999999999999999988


Q ss_pred             EEEEEEEe
Q psy3045         209 ASGELKLG  216 (267)
Q Consensus       209 ~~~~l~v~  216 (267)
                      .++.+.|.
T Consensus        93 ~t~~l~V~  100 (101)
T cd05859          93 YTFALQIQ  100 (101)
T ss_pred             EEEEEEEE
Confidence            88888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.58  E-value=2.5e-14  Score=89.88  Aligned_cols=70  Identities=23%  Similarity=0.447  Sum_probs=61.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|+.+.|.|.+.|.|.|.+.|++++.++...          ..+.|.|..+.++|+|.|+|.|.|..|....++.|.
T Consensus         6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~   85 (86)
T cd05894           6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK   85 (86)
T ss_pred             EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence            6788999999999999999999999999888532          235799999999999999999999999887776664

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=3.5e-14  Score=89.73  Aligned_cols=71  Identities=17%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      |+.+.|.|.+.|.|++.+.|++++..+....              .+.|.|.++..+|+|.|+|.|.|..|.......|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            6889999999999999999999997764321              14688999999999999999999999999999998


Q ss_pred             Eeccc
Q psy3045         215 LGGRF  219 (267)
Q Consensus       215 v~~~~  219 (267)
                      |....
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            87543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.57  E-value=5.7e-14  Score=90.51  Aligned_cols=74  Identities=28%  Similarity=0.544  Sum_probs=64.4

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +..+..|+.+.|.|.+.|.|.+.+.|++++..+...        ..+.|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            347788999999999999999999999999877543        345799999999999999999999999988888877


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      |.
T Consensus        92 V~   93 (95)
T cd05730          92 VF   93 (95)
T ss_pred             EE
Confidence            74

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.57  E-value=2.1e-14  Score=87.17  Aligned_cols=67  Identities=25%  Similarity=0.516  Sum_probs=58.2

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+.+.|.|.+.|.|.|.+.|++++..+..+      ....|.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999998876432      3468999999999999999999999999888877653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.57  E-value=3.7e-14  Score=90.62  Aligned_cols=73  Identities=26%  Similarity=0.456  Sum_probs=62.1

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++.++...          ....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            3457889999999999999999999999999877532          124699999999999999999999999887776


Q ss_pred             EEE
Q psy3045         212 ELK  214 (267)
Q Consensus       212 ~l~  214 (267)
                      .+.
T Consensus        89 ~v~   91 (92)
T cd05737          89 TVS   91 (92)
T ss_pred             EEe
Confidence            654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=3.7e-14  Score=87.22  Aligned_cols=67  Identities=27%  Similarity=0.614  Sum_probs=58.6

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+.+.|.|.+.|.|.|.++|+++|.++...        ....|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999877542        2468999999999999999999999999888777765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.56  E-value=2.8e-14  Score=89.71  Aligned_cols=75  Identities=33%  Similarity=0.635  Sum_probs=64.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+...     ....|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            345558889999999999999999999999999987643     346899999999999999999999999877776664

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.55  E-value=7.5e-14  Score=89.25  Aligned_cols=77  Identities=29%  Similarity=0.597  Sum_probs=64.5

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...         ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         6 ~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   85 (92)
T cd05747           6 ILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ   85 (92)
T ss_pred             ccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence            334456678999999999999999999999999998876532         23579999999999999999999999987


Q ss_pred             eEEEEE
Q psy3045         208 QASGEL  213 (267)
Q Consensus       208 ~~~~~l  213 (267)
                      ..++.|
T Consensus        86 ~~~~~l   91 (92)
T cd05747          86 EAQFTL   91 (92)
T ss_pred             eEEEEe
Confidence            766654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.55  E-value=3.3e-14  Score=86.58  Aligned_cols=64  Identities=25%  Similarity=0.435  Sum_probs=54.7

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC---------CC--CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|+|++..+...         ..  .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            478999999999999999999887532         11  27999999999999999999999999888877754

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.54  E-value=8.4e-14  Score=88.65  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=62.2

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         ....|.|.++..+|.|.|+|.|.|..|....+..
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~   87 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ   87 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence            3446889999999999999999999999999876432         1247899999999999999999999998887776


Q ss_pred             EE
Q psy3045         213 LK  214 (267)
Q Consensus       213 l~  214 (267)
                      |.
T Consensus        88 L~   89 (90)
T cd04972          88 VT   89 (90)
T ss_pred             Ee
Confidence            65

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.54  E-value=1e-13  Score=88.72  Aligned_cols=75  Identities=28%  Similarity=0.620  Sum_probs=60.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-CceEEEEE-CCccCCC-C----------CCCeEEeccCCCCCCeEEEEEEEcCC-CC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPD-H----------NEPVFRIDSVRKEDKGMYQCVIRNEQ-ES  206 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~-~~~~~~~-~----------~~~~l~i~~~~~~d~g~y~C~~~~~~-~~  206 (267)
                      +....+..|+.+.|.|.+.|.| +|.+.|++ ++..+.. .          ..+.|.|.++..+|+|.|+|.|.|.. +.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~   86 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence            3444788899999999999998 47999998 7766543 1          12579999999999999999999996 77


Q ss_pred             ceEEEEEEE
Q psy3045         207 AQASGELKL  215 (267)
Q Consensus       207 ~~~~~~l~v  215 (267)
                      .+.++.|.+
T Consensus        87 ~~~s~~l~v   95 (96)
T cd05865          87 SEATVNVKI   95 (96)
T ss_pred             EEEEEEEEE
Confidence            777777655

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.54  E-value=7.1e-14  Score=85.81  Aligned_cols=67  Identities=25%  Similarity=0.537  Sum_probs=58.4

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+.+.|.|.+.|.|.|.++|+++|.++...        +...|.+..++.+|.|.|+|.|+|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999887421        2357889999999999999999999999888887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.53  E-value=1.1e-13  Score=87.22  Aligned_cols=71  Identities=31%  Similarity=0.592  Sum_probs=60.8

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|+.+.|.|.+.|.|.+.+.|++++..+....          ...|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            67789999999999999999999999998875432          23588889999999999999999999888877665


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      |
T Consensus        85 v   85 (85)
T cd05857          85 V   85 (85)
T ss_pred             C
Confidence            3

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.53  E-value=1e-13  Score=89.28  Aligned_cols=87  Identities=23%  Similarity=0.332  Sum_probs=67.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ||.|...+...+..+..|+++.|.|.+.+     +.|++++.....     ...++..  ..+.|.|.++..+|+|.|+|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   75 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES-----GEEKYSFNEDGSEMTILDVDKLDEAEYTC   75 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcC-----CCCEEEEeCCCCEEEECCCChhhCEEEEE
Confidence            57777776556778999999999999999     999996332111     0123322  33579999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEe
Q psy3045          86 VVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~  104 (267)
                      .+.|..|.....+.|.|..
T Consensus        76 ~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          76 IAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEcCCCeEEEEEEEEEEe
Confidence            9999999988888888764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.53  E-value=6.3e-14  Score=84.04  Aligned_cols=65  Identities=23%  Similarity=0.414  Sum_probs=55.6

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|.|.+.|.|.|.+.|+||+.++...    ....|.|..+..+|+|.|+|.|.|..|..+....+.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            368999999999999999999988643    24579999999999999999999999987776666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=1.8e-13  Score=88.38  Aligned_cols=71  Identities=18%  Similarity=0.464  Sum_probs=58.8

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+...              ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            4455899999999999999999999988765421              11479999999999999999999999988877


Q ss_pred             EEEEE
Q psy3045         211 GELKL  215 (267)
Q Consensus       211 ~~l~v  215 (267)
                      ..|.|
T Consensus        93 ~~l~v   97 (97)
T cd05869          93 MYLEV   97 (97)
T ss_pred             EEEEC
Confidence            76653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.51  E-value=7.1e-14  Score=85.25  Aligned_cols=64  Identities=23%  Similarity=0.505  Sum_probs=54.3

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCCC-------C----CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDHN-------E----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|+|++..+....       .    ..|.|..+..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            4789999999999999999998875321       1    15899999999999999999999999888877653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.51  E-value=3e-13  Score=87.50  Aligned_cols=87  Identities=22%  Similarity=0.375  Sum_probs=64.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec-cccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV-AVPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      +|.|.. +  .+..+.+|++++|.|.+.+     +.|+++.++..... ......|+..    ...+|.|.+++.+|+|.
T Consensus         2 ~p~i~~-~--~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~   78 (98)
T cd05870           2 QPHIIQ-L--KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR   78 (98)
T ss_pred             CCEEEe-e--ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence            677764 3  6899999999999999998     99999643322111 0112234433    23589999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEE
Q psy3045          83 YLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+|.|.|..|.....+.|.|
T Consensus        79 Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          79 YDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEeccCCcceeEEEEeC
Confidence            99999999999888777764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.51  E-value=1.1e-13  Score=83.66  Aligned_cols=65  Identities=26%  Similarity=0.465  Sum_probs=56.0

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|.|.+.|.|.|.+.|+|+|.++...     ....|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            478999999999999999999888643     45789999999999999999999999887777766653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.51  E-value=1.5e-13  Score=84.66  Aligned_cols=67  Identities=25%  Similarity=0.534  Sum_probs=58.5

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+.+.|.|.+.|.|.|.+.|++++..+...        ....|.|..++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999877532        3478999999999999999999999998887777765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.51  E-value=1.5e-13  Score=83.22  Aligned_cols=65  Identities=32%  Similarity=0.653  Sum_probs=55.2

Q ss_pred             CEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         151 PAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ++.|.|.+.|.|.|.++|++++..+...      ....|.|..+..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999876543      2356888899999999999999999999888777653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>KOG3515|consensus

Probab=99.50  E-value=1.3e-13  Score=115.43  Aligned_cols=215  Identities=20%  Similarity=0.305  Sum_probs=138.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.....+ ... .+..|+.|.|.|.+.+      ++|++...+..       ..+.......|......+..-+.|.|
T Consensus         6 ~~pv~~~~~-l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~c   76 (741)
T KOG3515|consen    6 NVPVCESSS-LTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-------GRYATIADPTLVTTGDVRDTVAELNC   76 (741)
T ss_pred             CCccccCCC-CCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc-------cccccccCCceeeecchhhhhhhhhh
Confidence            344444333 234 8999999999999999      99999643322       22223344567777777777789999


Q ss_pred             EEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC--CCC
Q psy3045          86 VVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE--GNP  162 (267)
Q Consensus        86 ~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~p  162 (267)
                      ++.|..+. ......+.|..++.........                             ....+..+.+.|.+.  +.|
T Consensus        77 ~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~-----------------------------~~~~~~vvqi~c~~~~~~~P  127 (741)
T KOG3515|consen   77 RAFNSVGMPSRCPMILDVDYPPACLPELGEI-----------------------------FQVDKGVVQIICSAKVAGRP  127 (741)
T ss_pred             hhcccccCceecceeeccccCccccccccch-----------------------------hhhcCCeEEEEEeecCCCCC
Confidence            99988655 3455556665544322221111                             444577899999654  457


Q ss_pred             CceEEEEECCccCCC-----------------CCCCeEEeccCCCCCCeEEEEEEEcCC---CCceEEEEEEEecccCCC
Q psy3045         163 VKTISWMKDGKPVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ---ESAQASGELKLGGRFDPP  222 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~-----------------~~~~~l~i~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~p  222 (267)
                      .+++.|.+++.....                 .....+.+......+.|.|+|.+.++.   ........+.+.......
T Consensus       128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~  207 (741)
T KOG3515|consen  128 NPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGI  207 (741)
T ss_pred             CcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccc
Confidence            889999987654321                 113456677777889999999999853   333333334443221122


Q ss_pred             eeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEcCC
Q psy3045         223 VIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l~~  264 (267)
                      .+.....-..+.+|+.+.|.|.+. |+|.+.++||++...+..
T Consensus       208 ~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  208 GITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             eecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            222222225678899999999776 588899999999877654

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.50  E-value=1.7e-13  Score=83.54  Aligned_cols=67  Identities=30%  Similarity=0.513  Sum_probs=58.0

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+.+.|.|.+.|.|.+.+.|++++..+...      ....|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999877533      2467999999999999999999999999888777653

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.50  E-value=3.5e-13  Score=85.45  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=64.7

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      ||.+...+  .+..+.+|+++.|.|.+.+     +.|++++....      ........+..|.|.+++.+|+|.|+|.+
T Consensus         1 p~~~~~~p--~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   72 (88)
T cd04968           1 PSIIVVFP--KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP------SSAEISMSGAVLKIPNIQFEDEGTYECEA   72 (88)
T ss_pred             CCcEEECC--CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC------CccEEEEeCCEEEECCCCcccCEEEEEEE
Confidence            45666666  7888999999999999988     99999633211      11222345678999999999999999999


Q ss_pred             EcCCCccEEEEEEEE
Q psy3045          88 NNSVGGESVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V  102 (267)
                      .|..|.......|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd04968          73 ENIKGKDTHQGRIYV   87 (88)
T ss_pred             EECCCcEEEEEEEEE
Confidence            999999888888776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.49  E-value=2.8e-13  Score=87.67  Aligned_cols=74  Identities=28%  Similarity=0.504  Sum_probs=60.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCCC--------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVPD--------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~~--------------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +.+..+.+|+.++|.|.+.|.|.|.+.|+++  +..+..              .....|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            3455888999999999999999999999994  333321              123579999999999999999999999


Q ss_pred             CCceEEEEEE
Q psy3045         205 ESAQASGELK  214 (267)
Q Consensus       205 ~~~~~~~~l~  214 (267)
                      |....+..|.
T Consensus        88 G~~~~~~~l~   97 (98)
T cd05870          88 GGHQKSMYLD   97 (98)
T ss_pred             CcceeEEEEe
Confidence            9888776664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.49  E-value=2.5e-13  Score=86.81  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=63.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      .||.|...|  .+..+.+|+++.|.|.+.+     +.|++++..      +....++..    ..++|.|.++..+|+|.
T Consensus         2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~------l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   73 (92)
T cd05747           2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQI------IVSSQRHQITSTEYKSTFEISKVQMSDEGN   73 (92)
T ss_pred             CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEE------CCCCCcEEEEEcCCeeEEEECCCCcccCEe
Confidence            378888887  7899999999999999999     999996321      111223322    23589999999999999


Q ss_pred             EEEEEEcCCCccEEEEEE
Q psy3045          83 YLCVVNNSVGGESVETVL  100 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l  100 (267)
                      |+|.+.|..|.....+.|
T Consensus        74 Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          74 YTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEEcCCCCEeEEEEe
Confidence            999999999987776655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=5.8e-13  Score=82.43  Aligned_cols=70  Identities=24%  Similarity=0.479  Sum_probs=58.2

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ..+.+|+.+.|.|.+.+. .+.+.|+++|.++....     ...|.|.++..+|+|.|+|.|.|..+.....+.+.
T Consensus         4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973           4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            377889999999999886 56899999999886532     45699999999999999999999988766665543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.49  E-value=3.3e-13  Score=86.04  Aligned_cols=74  Identities=26%  Similarity=0.447  Sum_probs=61.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|..+..+|+|.|+|.|.|..|....+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            445688999999999999999999999999987764321          1378999999999999999999999988776


Q ss_pred             EEEE
Q psy3045         211 GELK  214 (267)
Q Consensus       211 ~~l~  214 (267)
                      ..+.
T Consensus        88 ~~v~   91 (92)
T cd05891          88 VTVS   91 (92)
T ss_pred             EEEE
Confidence            6654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=2.7e-13  Score=82.09  Aligned_cols=64  Identities=25%  Similarity=0.512  Sum_probs=55.3

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|++++..+...      ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            468999999999999999998776432      3568999999999999999999999998887777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.49  E-value=4.3e-13  Score=84.07  Aligned_cols=68  Identities=24%  Similarity=0.400  Sum_probs=57.9

Q ss_pred             CCEEEEeEeCCCCCc--eEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         150 RPAQFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       150 ~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +++.|.|.+.|.|.+  .+.|++++..+...             ..+.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999866  68999999876431             235799999999999999999999999999999998


Q ss_pred             Eec
Q psy3045         215 LGG  217 (267)
Q Consensus       215 v~~  217 (267)
                      |..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            863

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.48  E-value=4e-13  Score=84.46  Aligned_cols=79  Identities=27%  Similarity=0.401  Sum_probs=63.9

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      |...|  .+..+..|+++.|.|.+.+     +.|++++.      .+....++...++.|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~~~~p--~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           2 WLKVI--SDTEADIGSSLRWECKASGNPRPAYRWLKNGQ------PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             ccccC--CccEEcCCCcEEEEEEeeEeCCCEEEEEECCE------ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECC
Confidence            44455  6889999999999999999     99999633      12234456666779999999999999999999999


Q ss_pred             CCccEEEEEEEE
Q psy3045          91 VGGESVETVLTV  102 (267)
Q Consensus        91 ~~~~~~~~~l~V  102 (267)
                      .|.....+.|.|
T Consensus        74 ~G~~~~~~~l~V   85 (85)
T cd05728          74 HGTIYASAELAV   85 (85)
T ss_pred             CCeEEEEEEEEC
Confidence            998877777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.48  E-value=6.9e-13  Score=84.19  Aligned_cols=73  Identities=25%  Similarity=0.451  Sum_probs=60.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGEL  213 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l  213 (267)
                      +.++.+.+|+.++|.|.+.|. .|.+.|++++..+...      ....|.|..+..+|+|.|.|.|.|..|.... ...|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            345578899999999999999 9999999999876432      3468999999999999999999999987544 3444


Q ss_pred             E
Q psy3045         214 K  214 (267)
Q Consensus       214 ~  214 (267)
                      .
T Consensus        89 ~   89 (91)
T cd05740          89 N   89 (91)
T ss_pred             E
Confidence            3

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.48  E-value=3.1e-13  Score=85.81  Aligned_cols=83  Identities=23%  Similarity=0.347  Sum_probs=63.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|...+...+..+.+|++++|.|.+.+    +.|++++...       ...++.  ..+.+|.|.+++.+|+|.|+|.
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~~p~i~W~kng~~l-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   73 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQATYIWWVNNGSLL-------VPPRLQLSNDNRTLTFNNVTRSDTGHYQCE   73 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCCCCEEEEEECCEEC-------CCCCEEEeCCCCEEEECcCChhhCEEEEEE
Confidence            36676666556789999999999999999    9999963211       112232  2345899999999999999999


Q ss_pred             EEcCCCc-cEEEEEEEE
Q psy3045          87 VNNSVGG-ESVETVLTV  102 (267)
Q Consensus        87 ~~~~~~~-~~~~~~l~V  102 (267)
                      |.|..|. .+..+.|.|
T Consensus        74 a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          74 ASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEcCCCCEEeeeEEEEe
Confidence            9999997 466666765

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.48  E-value=7.5e-13  Score=85.50  Aligned_cols=73  Identities=25%  Similarity=0.405  Sum_probs=61.2

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .+..+.+|+.+.|.|.+.|.|.+.+.|++++..+...              ....|.|.++..+|+|.|.|.|.|..|..
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD   88 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence            3457888999999999999999999999988655321              12479999999999999999999999998


Q ss_pred             eEEEEEE
Q psy3045         208 QASGELK  214 (267)
Q Consensus       208 ~~~~~l~  214 (267)
                      ..++.|.
T Consensus        89 ~~s~~l~   95 (96)
T cd05732          89 QQSMYLE   95 (96)
T ss_pred             EEEEEEe
Confidence            7777665

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.47  E-value=6.3e-13  Score=82.12  Aligned_cols=67  Identities=21%  Similarity=0.519  Sum_probs=55.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +.+..+.+|+.+.|.|.+.|.|.| .|.|+++|.++..   ...+.|.|..+  .|.|.|.|.|.|..|....
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            455688999999999999999999 7999999998753   34567888776  4789999999999986554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.47  E-value=2.7e-13  Score=86.55  Aligned_cols=85  Identities=31%  Similarity=0.441  Sum_probs=64.6

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      |.|...+  .++.+.+|+++.|.|.+.+     +.|++++.  .................+|.|.++..+|+|.|+|.+.
T Consensus         1 P~~~~~~--~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~--~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    1 PVFTKKP--KDVTVKEGESVTLECEVSGNPPPTVTWYKNGR--PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEEEES--SEEEEETTSEEEEEEEEEESSSSEEEEEETTE--EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred             CEEEEec--CCEEEeCCCEEEEEEEEEeCCCCccccccccc--ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence            6677777  8999999999999999998     99999622  2211111111111245689999999999999999999


Q ss_pred             cCCCccEEEEEEEE
Q psy3045          89 NSVGGESVETVLTV  102 (267)
Q Consensus        89 ~~~~~~~~~~~l~V  102 (267)
                      +..|.....+.|.|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            99888888877765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.47  E-value=3.6e-13  Score=82.90  Aligned_cols=64  Identities=30%  Similarity=0.658  Sum_probs=52.8

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ++|.|.+.|.|.|.+.|+|+|.++...        ....|.|.++..+|+|.|.|.|.|..|....+..+.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            478999999999999999999887543        2357999999999999999999999987654444444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.46  E-value=5.5e-13  Score=81.60  Aligned_cols=65  Identities=25%  Similarity=0.509  Sum_probs=55.2

Q ss_pred             CEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         151 PAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .+.|.|.+.|.|.|.+.|++++..+...         ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3689999999999999999999887432         2457999999999999999999999998877776643

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.46  E-value=5.2e-13  Score=81.66  Aligned_cols=64  Identities=22%  Similarity=0.407  Sum_probs=54.1

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|+|++..+....           ...|.|..++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            4789999999999999999998875321           125999999999999999999999998888776653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=6e-13  Score=80.24  Aligned_cols=63  Identities=30%  Similarity=0.637  Sum_probs=54.0

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +.|.|.+.|.|.|.+.|++++..+...     ....|.|.++..+|+|.|+|.|.|..|....+..|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            478999999999999999998766543     356899999999999999999999999887776664

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.46  E-value=5.4e-13  Score=83.56  Aligned_cols=70  Identities=26%  Similarity=0.578  Sum_probs=59.2

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+...       ....|.|.++..+|+|.|+|.+.|..|....++.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            5667999999999999999999999999877432       235799999999999999999999999877666554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.46  E-value=2.6e-13  Score=86.64  Aligned_cols=75  Identities=33%  Similarity=0.670  Sum_probs=64.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+...         ....|.|.++..+|+|.|+|.|.|..+....++
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~   86 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV   86 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence            45568999999999999999999999999999887643         357899999999999999999999988877777


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .|.|
T Consensus        87 ~l~V   90 (90)
T PF07679_consen   87 NLTV   90 (90)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            6654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.45  E-value=4.1e-13  Score=80.86  Aligned_cols=62  Identities=39%  Similarity=0.623  Sum_probs=53.5

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      |.|.|.+.|.|.|.+.|++++..+...      ....|.|.++..+|+|.|+|.|.|..|....+..|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            478999999999999999999877532      35689999999999999999999999988776654

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.45  E-value=1.1e-12  Score=81.14  Aligned_cols=74  Identities=24%  Similarity=0.388  Sum_probs=58.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      .+..+.+|+++.|.|.+.+    +.|+|++..      +....++...+..|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~------l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDDVQSINWTKDGVQ------LGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CcEEecCCCCEEEEEEecCCCceEEEeeCCcC------CCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            5778999999999999998    999996322      222345555566899999999999999999999888766665


Q ss_pred             EEEE
Q psy3045          99 VLTV  102 (267)
Q Consensus        99 ~l~V  102 (267)
                      .|.|
T Consensus        76 ~v~V   79 (79)
T cd04973          76 SVNV   79 (79)
T ss_pred             EEeC
Confidence            5543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.44  E-value=6.7e-13  Score=82.19  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             EEEeEeCCCCCceEEEEECCccCCCCC----------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         153 QFTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       153 ~l~C~~~~~p~~~~~W~~~~~~~~~~~----------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .|.|.+.|.|.|.++|+++|..+....                ...|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            367999999999999999998886432                23589999999999999999999999888776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.44  E-value=1.2e-12  Score=85.32  Aligned_cols=88  Identities=26%  Similarity=0.408  Sum_probs=59.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEE---E--eecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLI---I--KEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~---i--~~~~~~d~G~   82 (267)
                      ||.|...+  .+..+.+|+++.|.|.+.+     +.|++++.............+....++.+.   +  ..+..+|+|.
T Consensus         1 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           1 PPRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CCeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            58888887  7899999999999999998     999996432211000011112222222222   2  2236889999


Q ss_pred             EEEEEEcCCCc-cEEEEEEEE
Q psy3045          83 YLCVVNNSVGG-ESVETVLTV  102 (267)
Q Consensus        83 Y~C~~~~~~~~-~~~~~~l~V  102 (267)
                      |+|.+.|..|. .+..+.|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            99999999998 667777665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.44  E-value=1.4e-12  Score=85.04  Aligned_cols=77  Identities=29%  Similarity=0.602  Sum_probs=56.6

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEE---ec--cCCCCCCeEEEEEEEc
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFR---ID--SVRKEDKGMYQCVIRN  202 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~---i~--~~~~~d~g~y~C~~~~  202 (267)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...           ....+.   +.  .+..+|+|.|+|.|.|
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N   85 (100)
T cd07693           6 EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN   85 (100)
T ss_pred             ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence            3345568889999999999999999999999999887541           111221   21  2368899999999999


Q ss_pred             CCCC-ceEEEEEEE
Q psy3045         203 EQES-AQASGELKL  215 (267)
Q Consensus       203 ~~~~-~~~~~~l~v  215 (267)
                      ..|. ......|.|
T Consensus        86 ~~G~~~s~~~~l~v   99 (100)
T cd07693          86 SLGEAVSRNASLEV   99 (100)
T ss_pred             cccceecceEEEEe
Confidence            9988 444555543

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.44  E-value=1.3e-12  Score=78.36  Aligned_cols=63  Identities=22%  Similarity=0.548  Sum_probs=51.7

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      |+.+.|.|.+.|.|.|.+.|++++.++....     ...|.|.++  .|+|.|+|.|.|..|....+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999999999999999998775432     346778776  47999999999999987766554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.44  E-value=1.8e-12  Score=83.64  Aligned_cols=87  Identities=25%  Similarity=0.397  Sum_probs=62.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y   83 (267)
                      .|+|...+  ....+..|++++|.|.+.+     +.|++++...... ......++..    ..+.|.|.++..+|+|.|
T Consensus         2 ~p~i~~~~--~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           2 KPKITYVE--NQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSE-EKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             CceEEEcc--CceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCC-ccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence            57787666  4555666899999999998     9999963221111 0111223221    235899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEE
Q psy3045          84 LCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V  102 (267)
                      +|.|.|..|..+..+.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999988888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.43  E-value=9.6e-13  Score=80.45  Aligned_cols=61  Identities=20%  Similarity=0.450  Sum_probs=51.8

Q ss_pred             EEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         154 FTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       154 l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      |.|.+.|.|.|.++|+|||.++..+.              ...|.|..+..+|+|.|+|.|+|..|+..+++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67899999999999999999886432              23688999999999999999999999887776543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.43  E-value=7.3e-13  Score=81.83  Aligned_cols=67  Identities=28%  Similarity=0.485  Sum_probs=56.0

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |+++.|.|.+.|.|.|.+.|++++..+...         ....|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            678999999999999999999998766532         2357999999999999999999999988766555544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.43  E-value=1.5e-12  Score=82.00  Aligned_cols=68  Identities=22%  Similarity=0.452  Sum_probs=57.3

Q ss_pred             CCEEEEeEeCCCCCc--eEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         150 RPAQFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       150 ~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +++.|.|.+.+.|.+  .+.|+++|..+...             ..+.|.|.+++.+|+|.|+|.|.|..+....+..|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999866  67999999876421             246799999999999999999999999888888888


Q ss_pred             Eec
Q psy3045         215 LGG  217 (267)
Q Consensus       215 v~~  217 (267)
                      |.+
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            863

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.43  E-value=1.1e-12  Score=82.50  Aligned_cols=75  Identities=21%  Similarity=0.280  Sum_probs=58.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..+.+.+|+.+.|.|.+.|     +.|++++....     ....++..    ..+.|.|.++..+|+|.|+|.+.|..|.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~-----~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~   77 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFT-----ETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE   77 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECc-----cCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence            5688999999999999998     99999643221     11223332    2468999999999999999999999999


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ....+.|.|
T Consensus        78 ~~~~~~l~V   86 (86)
T cd05894          78 DHASLFVKV   86 (86)
T ss_pred             EEEEEEEEC
Confidence            888777764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=2.5e-12  Score=81.27  Aligned_cols=69  Identities=32%  Similarity=0.626  Sum_probs=57.8

Q ss_pred             CceEEEecCCCEEEEeEe-CCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         141 PTVQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +....+.+|+++.|.|.+ .+.|.+.+.|++++..+...       ....|.|.++..+|+|.|+|.+.|..|....
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            344578899999999998 68899999999999876542       2468999999999999999999999887543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.43  E-value=3.6e-12  Score=83.88  Aligned_cols=69  Identities=22%  Similarity=0.377  Sum_probs=58.7

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCC-CCCCeEEEEEEEcCCCCceEEEE
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      .|..+.|.|.+.|.|.+.+.|++++..+...+              .+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            46789999999999999999999998775321              2468898887 58999999999999999988888


Q ss_pred             EEEe
Q psy3045         213 LKLG  216 (267)
Q Consensus       213 l~v~  216 (267)
                      |.+.
T Consensus       102 L~~~  105 (109)
T cd05773         102 LVST  105 (109)
T ss_pred             EEec
Confidence            8876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.43  E-value=9.3e-13  Score=79.11  Aligned_cols=64  Identities=25%  Similarity=0.432  Sum_probs=52.1

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|+|++.++...      ....|.|.++..+|+|.|+|.|.+..........+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            468999999999999999999887543      3458999999999999999999998665555444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=2.2e-12  Score=82.34  Aligned_cols=72  Identities=24%  Similarity=0.402  Sum_probs=59.6

Q ss_pred             eEEEecCCCEEEEeEeCC-----CCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         143 VQTIDFGRPAQFTCKYEG-----NPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      +..+.+|+.+.|.|.+.+     .|.+.+.|+|++..+...         ....|.|..+..+|+|.|.|.+.|..+..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            346778999999999988     688899999998764311         246799999999999999999999998887


Q ss_pred             EEEEEE
Q psy3045         209 ASGELK  214 (267)
Q Consensus       209 ~~~~l~  214 (267)
                      ..+.|.
T Consensus        88 ~~~~L~   93 (94)
T cd05756          88 VSISLT   93 (94)
T ss_pred             EEEEEE
Confidence            776664

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=1.1e-12  Score=79.71  Aligned_cols=64  Identities=33%  Similarity=0.595  Sum_probs=54.3

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.+.|++++..+...      ....|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            478999999999999999998766432      3468999999999999999999999998777776655

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.42  E-value=1.9e-12  Score=80.36  Aligned_cols=68  Identities=16%  Similarity=0.378  Sum_probs=57.8

Q ss_pred             CCEEEEeEeCCC--CCceEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         150 RPAQFTCKYEGN--PVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       150 ~~v~l~C~~~~~--p~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +++.|.|.+.+.  +++.+.|++||.++...             ..+.|.|.+++.+|+|.|+|.|.|..+....+..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468899998764  47899999999988521             235799999999999999999999999999999999


Q ss_pred             Eec
Q psy3045         215 LGG  217 (267)
Q Consensus       215 v~~  217 (267)
                      |.+
T Consensus        81 V~~   83 (85)
T cd05853          81 VRG   83 (85)
T ss_pred             Eec
Confidence            874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.41  E-value=3.9e-12  Score=82.15  Aligned_cols=86  Identities=24%  Similarity=0.409  Sum_probs=62.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y   83 (267)
                      +|.|.. +  .+..+.+|+++.|.|.+.+     +.|++++..... .......++..    ....|.|.+++.+|+|.|
T Consensus         2 ~P~i~~-~--~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (96)
T cd05732           2 QPKITY-L--ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSE-GDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY   77 (96)
T ss_pred             Ccccee-c--CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCC-CCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence            577753 3  5788999999999999998     999996421110 00011223222    235899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEE
Q psy3045          84 LCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V  102 (267)
                      +|.+.|..|.....+.|.|
T Consensus        78 ~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          78 DCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEeCCCCcEEEEEEeC
Confidence            9999999999888777754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.41  E-value=2.7e-12  Score=78.72  Aligned_cols=64  Identities=36%  Similarity=0.682  Sum_probs=52.7

Q ss_pred             EEEEeEeCCCCCceEEEEECCccC-CC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~-~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.|.|.|.++|++++... ..         .....|.|.++..+|+|.|.|.|.|..|....+..|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            368999999999999999988632 11         13467999999999999999999999998877777665

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=2.3e-12  Score=81.98  Aligned_cols=69  Identities=29%  Similarity=0.514  Sum_probs=58.5

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCC--------C------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      |+.+.|.|.+.+.|.|.+.|++++..+.        .      .....|.|.+++.+|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            6789999999999999999999876431        1      1245799999999999999999999999988888888


Q ss_pred             Eec
Q psy3045         215 LGG  217 (267)
Q Consensus       215 v~~  217 (267)
                      |..
T Consensus        81 V~~   83 (90)
T cd05726          81 VTD   83 (90)
T ss_pred             Eee
Confidence            864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.40  E-value=2.3e-12  Score=81.92  Aligned_cols=67  Identities=24%  Similarity=0.450  Sum_probs=54.6

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECC----ccCCC------------------CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDG----KPVPD------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~----~~~~~------------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |+.+.|.|.+.|.|.|.+.|+|++    ..+..                  .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999953    22110                  12247899999999999999999999999


Q ss_pred             ceEEEEEEE
Q psy3045         207 AQASGELKL  215 (267)
Q Consensus       207 ~~~~~~l~v  215 (267)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888887765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.40  E-value=1.9e-12  Score=79.47  Aligned_cols=62  Identities=26%  Similarity=0.549  Sum_probs=52.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCC-ceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .|....+.+|++++|.|.+.+.|. ..+.|++|+..+. .....|.|.++ .+|+|.|+|.|.+.
T Consensus         6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            345558899999999999998874 5799999999873 34678999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.40  E-value=4.4e-12  Score=81.60  Aligned_cols=68  Identities=35%  Similarity=0.568  Sum_probs=54.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------CCeEEeccC-----CCCCCeEEEEEEEcC-CCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSV-----RKEDKGMYQCVIRNE-QES  206 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~  206 (267)
                      |....+.+|+++.|.|.+.+.|.+.+.|+|+|..+....        ...+.+..+     ..+|.|.|+|.|.|. .|.
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            444577789999999999999999999999998876432        244666554     578999999999999 877


Q ss_pred             ce
Q psy3045         207 AQ  208 (267)
Q Consensus       207 ~~  208 (267)
                      ..
T Consensus        86 ~~   87 (95)
T cd05722          86 IV   87 (95)
T ss_pred             EE
Confidence            63

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.40  E-value=3.6e-12  Score=82.27  Aligned_cols=77  Identities=21%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEE-------EEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+.+.+|+++.|.|.+.+      +.|+||+....  ..  ....+.       ...+.|.|.++..+|+|.|+|.|.|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~--~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT--NK--LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC--CC--cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            5789999999999999997      99999743221  11  011111       1246899999999999999999999


Q ss_pred             CCCccEEEEEEEEE
Q psy3045          90 SVGGESVETVLTVT  103 (267)
Q Consensus        90 ~~~~~~~~~~l~V~  103 (267)
                      ..|..+..+.|.|.
T Consensus        87 ~~G~~~~t~~L~V~  100 (101)
T cd04975          87 SDASKSLTFELYVN  100 (101)
T ss_pred             CCccEEEEEEEEEE
Confidence            99998888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.39  E-value=2.4e-12  Score=81.89  Aligned_cols=67  Identities=27%  Similarity=0.484  Sum_probs=54.6

Q ss_pred             CCCEEEEeEeCCCCCceEEEEEC----CccCCCC------------------CCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKD----GKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~----~~~~~~~------------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |+.+.|.|.+.|.|.|.+.|+++    +..+...                  ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    3322110                  1147999999999999999999999999


Q ss_pred             ceEEEEEEE
Q psy3045         207 AQASGELKL  215 (267)
Q Consensus       207 ~~~~~~l~v  215 (267)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888877765

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.9e-12  Score=78.42  Aligned_cols=66  Identities=30%  Similarity=0.610  Sum_probs=54.5

Q ss_pred             CCCEEEEeEeCCCCCceEEEEE-CCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+...      ....|.|..+..+|.|.|+|.|.|..|..+.+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            6789999999999999999997 55554332      346799999999999999999999999877666654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.39  E-value=6.8e-12  Score=79.22  Aligned_cols=73  Identities=32%  Similarity=0.314  Sum_probs=56.7

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      |+.+.|.|.+.+     +.|++++....     ....++..        ..++|.|.++...|+|.|+|.|.|..|....
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~-----~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~   75 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIIN-----PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG   75 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECC-----CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence            789999999999     99999642110     11122221        2367999999999999999999999999999


Q ss_pred             EEEEEEEeccc
Q psy3045          97 ETVLTVTAPLA  107 (267)
Q Consensus        97 ~~~l~V~~~~~  107 (267)
                      .+.|.|..+|.
T Consensus        76 ~~~L~V~~~P~   86 (88)
T cd05735          76 IIQLTVQEPPD   86 (88)
T ss_pred             EEEEEEeCCCC
Confidence            99999987654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.39  E-value=4.6e-12  Score=79.42  Aligned_cols=73  Identities=25%  Similarity=0.393  Sum_probs=54.5

Q ss_pred             CeEEEEEEecc-------eeeeecccCcceeccccCCce---EE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          31 ESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDR---VK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      ++++|.|.+.+       +.|++++.......   ...+   +.  ...++|.|.+++..|+|.|+|.|.|..|..+..+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~   77 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDK---PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccC---CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence            57899999998       79999632211100   1111   11  2456899999999999999999999999999999


Q ss_pred             EEEEEecc
Q psy3045          99 VLTVTAPL  106 (267)
Q Consensus        99 ~l~V~~~~  106 (267)
                      .|.|.++|
T Consensus        78 ~L~V~~~P   85 (85)
T cd05854          78 TLVVRGPP   85 (85)
T ss_pred             EEEEECCC
Confidence            99998643

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=2.8e-12  Score=81.93  Aligned_cols=74  Identities=32%  Similarity=0.452  Sum_probs=57.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--E---EeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--Q---VSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      +.+.+.+|+++.|.|.+.+     +.|++++...      ....++.  .   ...+|.|.+++.+|+|.|+|.+.|..|
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQAL------ALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEEC------ccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence            5789999999999999988     9999963221      1122221  1   134799999999999999999999999


Q ss_pred             ccEEEEEEEE
Q psy3045          93 GESVETVLTV  102 (267)
Q Consensus        93 ~~~~~~~l~V  102 (267)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            8877776654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.38  E-value=3e-12  Score=78.22  Aligned_cols=68  Identities=35%  Similarity=0.501  Sum_probs=53.3

Q ss_pred             CCCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          29 GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        29 ~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      +|+++.|.|.+.+     +.|++++...      ....+. ...+++|.|.+++.+|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQL------SVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEEC------CCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6999999999998     9999963311      112222 234568999999999999999999999999888777764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.38  E-value=3.8e-12  Score=80.66  Aligned_cols=72  Identities=25%  Similarity=0.495  Sum_probs=56.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEE-CCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-E
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-A  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~  209 (267)
                      +.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+         ....|.|..+..+|+|.|+|.|.|..|... .
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            34457889999999999999987 899998 45554322         124799999999999999999999988754 3


Q ss_pred             EEEE
Q psy3045         210 SGEL  213 (267)
Q Consensus       210 ~~~l  213 (267)
                      +..|
T Consensus        86 ~i~l   89 (92)
T cd05866          86 TVVL   89 (92)
T ss_pred             EEEE
Confidence            4444

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.38  E-value=6.2e-12  Score=80.48  Aligned_cols=62  Identities=26%  Similarity=0.512  Sum_probs=51.7

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .|+.+.|.|.+.|.|.|.++|++++..+...       ....|.|.++. .+|.|.|+|.|.|..|...+
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            4788999999999999999999999888532       23567788774 68999999999999987643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.37  E-value=1e-11  Score=80.32  Aligned_cols=72  Identities=19%  Similarity=0.293  Sum_probs=58.5

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCC---------------CCeEEeccCCCCC-CeEEEEEEEcCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQ  204 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d-~g~y~C~~~~~~  204 (267)
                      ....+.+|+.+.|.|.+.|.|.| .+.|++++..+....               .+.|.|.++..+| .|.|.|.|.|..
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~   88 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF   88 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence            34467889999999999999988 699999998765321               1378999999844 899999999999


Q ss_pred             CCceEEEEE
Q psy3045         205 ESAQASGEL  213 (267)
Q Consensus       205 ~~~~~~~~l  213 (267)
                      |.....+.|
T Consensus        89 G~~~~~~~L   97 (98)
T cd05758          89 GSGTAIISL   97 (98)
T ss_pred             CcccEEEEe
Confidence            987776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.37  E-value=3.9e-12  Score=77.17  Aligned_cols=67  Identities=28%  Similarity=0.423  Sum_probs=53.6

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++++..      +....++.. .+++|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~------l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTEL------LVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEe------cccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            789999999999     999996321      122344443 4578999999999999999999999999888877764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.37  E-value=4.1e-12  Score=80.54  Aligned_cols=75  Identities=25%  Similarity=0.395  Sum_probs=55.8

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      .+..+.+|+++.|.|.+.|    +.|+++++ ..    +....++...    .+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~~v~W~k~~g-~~----~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPESIDWYNPQG-EK----IVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCCeEEEEeCCC-eE----ecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            6788999999999999998    99998422 11    1112334332    2389999999999999999999999874


Q ss_pred             -EEEEEEEE
Q psy3045          95 -SVETVLTV  102 (267)
Q Consensus        95 -~~~~~l~V  102 (267)
                       ...+.|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             55555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.36  E-value=1.3e-11  Score=79.04  Aligned_cols=61  Identities=20%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCC-------CCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  209 (267)
                      |+.+.|.|.+.|.|.+.++|+++|..+....       ...|.|.++. .+|.|.|+|.|.|..|...+
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            4679999999999999999999998875322       3567787654 68999999999999987654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.36  E-value=5.6e-12  Score=80.40  Aligned_cols=73  Identities=29%  Similarity=0.610  Sum_probs=55.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEE-CCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCC-ce
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQ  208 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~  208 (267)
                      +....+..|+.+.|.|.+.|.|. .+.|++ ++..+...          ..+.|.|.++..+|+|.|+|.|.|..|. ..
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE   85 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence            34457889999999999999874 999997 55544321          2257999999999999999999998643 44


Q ss_pred             EEEEEE
Q psy3045         209 ASGELK  214 (267)
Q Consensus       209 ~~~~l~  214 (267)
                      .+..|.
T Consensus        86 ~sv~l~   91 (92)
T cd04977          86 ATVNLK   91 (92)
T ss_pred             eEEEEE
Confidence            455443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.36  E-value=3.9e-12  Score=81.45  Aligned_cols=76  Identities=29%  Similarity=0.438  Sum_probs=56.0

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ....+.+|+++.|.|.+.+      +.|++.++....    ....++..     ..++|.|.++..+|+|.|+|.|.|..
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~----~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT----PNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc----ccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            5668999999999999987      999983221111    11223221     12589999999999999999999997


Q ss_pred             -CccEEEEEEEE
Q psy3045          92 -GGESVETVLTV  102 (267)
Q Consensus        92 -~~~~~~~~l~V  102 (267)
                       |.....+.|.|
T Consensus        84 ~g~~~~s~~l~v   95 (96)
T cd05865          84 EGESEATVNVKI   95 (96)
T ss_pred             CCcEEEEEEEEE
Confidence             66777777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.36  E-value=2.5e-12  Score=78.96  Aligned_cols=71  Identities=23%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      |.+...|  +...+.+|++|+|.|.+.+      +.|++++...            ...+..|.|.++ .+|+|.|+|.+
T Consensus         1 ~vv~~~P--~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l------------~~~~~~l~i~~~-~~dsG~Y~C~a   65 (78)
T cd05752           1 AVVSLDP--PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL------------ETTTNSYRIRAA-NNDSGEYRCQT   65 (78)
T ss_pred             CeEEeCC--CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe------------eccCCeEEEeec-ccCCEEeEEEC
Confidence            4556666  6789999999999999775      9999963211            123457999999 99999999999


Q ss_pred             EcCCCccEEEEEEE
Q psy3045          88 NNSVGGESVETVLT  101 (267)
Q Consensus        88 ~~~~~~~~~~~~l~  101 (267)
                      .+.  ..+..+.|.
T Consensus        66 ~~~--~~S~~v~l~   77 (78)
T cd05752          66 QGS--SLSDPVHLE   77 (78)
T ss_pred             CCC--cCCCCEEEe
Confidence            875  334444443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.35  E-value=9.4e-12  Score=79.17  Aligned_cols=78  Identities=17%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      .+..+.+|+.+.|.|.+.+     +.|++++....  ..-............|.|.++..+|.|.|+|.|.|..|.....
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVI--QTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEcc--CCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            4566999999999999999     99999643211  0000000111234589999999999999999999999998887


Q ss_pred             EEEEE
Q psy3045          98 TVLTV  102 (267)
Q Consensus        98 ~~l~V  102 (267)
                      +.|.|
T Consensus        86 ~~L~v   90 (90)
T cd04972          86 VQVTV   90 (90)
T ss_pred             EEEeC
Confidence            77754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.35  E-value=5.6e-12  Score=78.67  Aligned_cols=67  Identities=28%  Similarity=0.503  Sum_probs=53.7

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCc---cC--CC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGK---PV--PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~---~~--~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+  ..         .....|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999732   11  11         1235799999999999999999999999877776664


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            3

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=6.7e-12  Score=76.63  Aligned_cols=64  Identities=31%  Similarity=0.604  Sum_probs=51.9

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCc-eEEEEEEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v  215 (267)
                      ++|.|.+.|.|.|.+.|++++.++...        ....|.|.++..+|+|.|+|.|.|..|.. .....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            368999999999999999998877521        34579999999999999999999999874 33555544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.35  E-value=1.1e-11  Score=76.30  Aligned_cols=64  Identities=30%  Similarity=0.643  Sum_probs=55.6

Q ss_pred             EEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         153 QFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       153 ~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .|.|.+.|.|.|.+.|++++..+...         ....|.|..+..+|.|.|+|.+.|..|....++.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            68999999999999999998876532         23579999999999999999999999999888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.34  E-value=1.1e-11  Score=79.03  Aligned_cols=61  Identities=18%  Similarity=0.364  Sum_probs=50.9

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  209 (267)
                      |..+.|.|.+.|.|.|.++|++++..+...      .+..|.|.++. .+|+|.|.|.|.|..|....
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            457999999999999999999999877432      24678898875 68999999999999987654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.34  E-value=7e-12  Score=76.98  Aligned_cols=61  Identities=25%  Similarity=0.547  Sum_probs=51.0

Q ss_pred             EEEEeEeCC-CCCceEEEEECCccCCCCC------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      +.|.|.+.+ .|.+.+.|++++..+....            ...|.|..+..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            468999999 8999999999998875321            356899999999999999999999988766543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.34  E-value=1.6e-11  Score=75.44  Aligned_cols=70  Identities=23%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++++....  . .....+....++.|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~--~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIE--G-TDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECC--C-CCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999988     99999632111  1 1112344556678999999999999999999999999888888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.34  E-value=8.2e-12  Score=77.49  Aligned_cols=73  Identities=27%  Similarity=0.432  Sum_probs=55.5

Q ss_pred             CeEEEEEEecc-------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          31 ESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      +++.|.|.+..       +.|++++....  .. ....++..     ..+.|.|.+++..|+|.|+|.|.+..+..+...
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~--~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a   77 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID--FQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA   77 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECc--cc-CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence            57899999876       99999643221  10 11223332     345899999999999999999999999999999


Q ss_pred             EEEEEecc
Q psy3045          99 VLTVTAPL  106 (267)
Q Consensus        99 ~l~V~~~~  106 (267)
                      .|.|.++|
T Consensus        78 ~L~V~~pP   85 (85)
T cd05853          78 DLIVRGPP   85 (85)
T ss_pred             EEEEecCC
Confidence            99998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.33  E-value=7.2e-12  Score=79.86  Aligned_cols=74  Identities=27%  Similarity=0.388  Sum_probs=53.7

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE-E----EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK-Q----VSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~-~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+..|+++.|.|.+.+    +.|++.+....     ....+.. .    ..++|+|.+++.+|+|.|+|.+.|..|.
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPKDISWFSPNGEKL-----VTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCCeEEEECCCCCEe-----ccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            6788999999999999988    99997322111     1111211 1    2358999999999999999999998765


Q ss_pred             -cEEEEEEE
Q psy3045          94 -ESVETVLT  101 (267)
Q Consensus        94 -~~~~~~l~  101 (267)
                       ....+.|.
T Consensus        83 ~~~~sv~l~   91 (92)
T cd04977          83 ESEATVNLK   91 (92)
T ss_pred             cceeEEEEE
Confidence             55665554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.33  E-value=1.1e-11  Score=79.15  Aligned_cols=78  Identities=29%  Similarity=0.350  Sum_probs=59.1

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ....+.+|+.+.|.|.+.+          +.|+|++....  .......|+...+..|.|.++..+|+|.|+|.+.|..|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~--~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP--IPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc--ccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            4678889999999997553          99999743211  11112345555567899999999999999999999999


Q ss_pred             ccEEEEEEEE
Q psy3045          93 GESVETVLTV  102 (267)
Q Consensus        93 ~~~~~~~l~V  102 (267)
                      .....+.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            8888777764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.32  E-value=2.9e-11  Score=77.39  Aligned_cols=81  Identities=28%  Similarity=0.449  Sum_probs=57.3

Q ss_pred             CcccCCCCceeEEecCC---CeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeEE
Q psy3045          14 PTFSSVSDIIRFKKPGG---ESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKYL   84 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g---~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~   84 (267)
                      |.|...|  .+..+.+|   +++.|.|.+.+     ++|++++....    .....++...++.|.|.++. ..|+|.|+
T Consensus         2 P~f~~~P--~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~----~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~   75 (94)
T cd05850           2 PVFEEQP--SSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIK----FAPESRYTLVAGNLVINNPQKARDAGSYQ   75 (94)
T ss_pred             CeeEECC--CCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECc----cCCCceEEEECCeEEEccCCccCcCEEEE
Confidence            6677766  56666555   68999999988     99999633221    11223455556789998865 58999999


Q ss_pred             EEEEcCCCcc-EEEEEE
Q psy3045          85 CVVNNSVGGE-SVETVL  100 (267)
Q Consensus        85 C~~~~~~~~~-~~~~~l  100 (267)
                      |.|.|..|.. +..+.|
T Consensus        76 C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          76 CLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEcCcCcEEEEEEEE
Confidence            9999999974 444443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.32  E-value=1.9e-11  Score=84.47  Aligned_cols=78  Identities=17%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEEC
Q psy3045         181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD  258 (267)
Q Consensus       181 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~  258 (267)
                      .+|.|.+++.+|+|.|.|.+.+..+.......|.+.   .+|.+...+......+|..+.|.|.+.|+++  +.|.|+++
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~---~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS---EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe---cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            368999999999999999999887777777777776   5777776665545557899999999999644  38999999


Q ss_pred             CEE
Q psy3045         259 GKK  261 (267)
Q Consensus       259 ~~~  261 (267)
                      |..
T Consensus        78 g~~   80 (139)
T cd05771          78 PPG   80 (139)
T ss_pred             CCC
Confidence            854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.32  E-value=2.9e-11  Score=76.07  Aligned_cols=73  Identities=26%  Similarity=0.541  Sum_probs=60.0

Q ss_pred             CceEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      +....+.+|+.++|.|.+.+ .|.+.+.|++++..+...   ....|.|..+..+|+|.|.|.+.|..|....+..|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            34457888999999999875 678899999988765432   35789999999999999999999999887776654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.31  E-value=2.4e-11  Score=79.96  Aligned_cols=89  Identities=24%  Similarity=0.314  Sum_probs=63.4

Q ss_pred             CCcccCCCCceeEEe--cCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--------EEeeEEEEeecc-
Q psy3045          13 APTFSSVSDIIRFKK--PGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--------QVSGTLIIKEAK-   76 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v--~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~-   76 (267)
                      +|.|...+....+..  ..|..+.|.|.+.+     +.|++++.....     ...++.        ...+.|.|.++. 
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~-----~~~r~~~~~~~~~~~~~s~L~I~~v~~   78 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL-----GNPRYEETTEHTGTVHTSILTIINVSA   78 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC-----CCCeEEEEeeccCccceeEEEECcCCc
Confidence            678877764223322  35689999999988     999996432110     111221        123579999997 


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEecc
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      .+|.|.|+|.|.|..|.....+.|.|...|
T Consensus        79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          79 ALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             cCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            589999999999999999999999887654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.31  E-value=1.3e-11  Score=78.74  Aligned_cols=74  Identities=32%  Similarity=0.480  Sum_probs=56.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE----E-EeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK----Q-VSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~----~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ..+.+.+|+++.|.|.+.+     +.|++++...      ....++.    . ...+|.|.++..+|+|.|+|.+.|..|
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDI------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEEC------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            5789999999999999877     9999963321      1112211    1 124799999999999999999999999


Q ss_pred             ccEEEEEEEE
Q psy3045          93 GESVETVLTV  102 (267)
Q Consensus        93 ~~~~~~~l~V  102 (267)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            8887777654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.31  E-value=4.7e-11  Score=75.69  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=59.2

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE-cCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN-NSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~   97 (267)
                      ..+.+.+|+++.|.|....    +.|++..++...........+.......|.|.++..+|+|.|+|.+. +..+.....
T Consensus         4 ~~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           4 KVVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             eEEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            4577899999999999644    99998644333222222345555666789999999999999999998 455556667


Q ss_pred             EEEEEE
Q psy3045          98 TVLTVT  103 (267)
Q Consensus        98 ~~l~V~  103 (267)
                      +.|.|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.30  E-value=1.6e-11  Score=77.08  Aligned_cols=67  Identities=16%  Similarity=0.321  Sum_probs=55.4

Q ss_pred             CCCEEEEeEeCCC--CCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         149 GRPAQFTCKYEGN--PVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       149 g~~v~l~C~~~~~--p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+...              ..+.|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999998  78899999877654211              1357999999999999999999999988887777


Q ss_pred             EEE
Q psy3045         213 LKL  215 (267)
Q Consensus       213 l~v  215 (267)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            655

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.30  E-value=2e-11  Score=76.90  Aligned_cols=77  Identities=23%  Similarity=0.354  Sum_probs=56.4

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC-CceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      ...+.+|+++.|.|.+.+     +.|++++....  ..... ..+......+|.|.++..+|+|.|+|.+.|..|.....
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~--~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECC--CCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence            356889999999999998     99999643221  11010 01112234579999999999999999999999998887


Q ss_pred             EEEEE
Q psy3045          98 TVLTV  102 (267)
Q Consensus        98 ~~l~V  102 (267)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05857          81 YHLDV   85 (85)
T ss_pred             EEEEC
Confidence            77764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.29  E-value=1.9e-11  Score=75.19  Aligned_cols=70  Identities=27%  Similarity=0.337  Sum_probs=53.2

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++++....  .. ....+.......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~--~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIE--EL-PPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECC--CC-CCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999988     99998633111  10 001123345578999999999999999999999999888888776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.29  E-value=3e-11  Score=77.29  Aligned_cols=75  Identities=29%  Similarity=0.492  Sum_probs=54.4

Q ss_pred             CcccCCCCceeEEec---CCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeEE
Q psy3045          14 PTFSSVSDIIRFKKP---GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKYL   84 (267)
Q Consensus        14 P~~~~~~~~~~~~v~---~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~   84 (267)
                      |.|...|  .++.+.   +|+.+.|.|.+.+     +.|++++....    .....++...++.|.|.++. ..|+|.|+
T Consensus         2 P~f~~~p--~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~----~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~   75 (94)
T cd05848           2 PVFVQEP--DDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEID----TESDYRYSLIDGNLIISNPSEVKDSGRYQ   75 (94)
T ss_pred             CeeEECC--CcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECc----cCCCceEEeeCCeEEEccCCccCcCEEEE
Confidence            6677776  455443   5789999999999     99999633211    11123444556789998875 68999999


Q ss_pred             EEEEcCCCcc
Q psy3045          85 CVVNNSVGGE   94 (267)
Q Consensus        85 C~~~~~~~~~   94 (267)
                      |.|.|..|..
T Consensus        76 C~A~N~~G~~   85 (94)
T cd05848          76 CLATNSIGSI   85 (94)
T ss_pred             EEEEcCCCeE
Confidence            9999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=4.3e-11  Score=76.12  Aligned_cols=76  Identities=25%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             CCeEEEEEEecc-----eeeeecccCccee--ccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRK--VAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~--~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      |+++.|.|.+.+     +.|++++......  .......++.. .++.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            789999999988     9999963321100  00112334443 356899999999999999999999999998899999


Q ss_pred             EEec
Q psy3045         102 VTAP  105 (267)
Q Consensus       102 V~~~  105 (267)
                      |...
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.29  E-value=3.8e-11  Score=76.16  Aligned_cols=80  Identities=26%  Similarity=0.463  Sum_probs=60.2

Q ss_pred             eeEEecCCCeEEEEEEe------------cc----eeeeecccCcceeccccC-CceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEA------------QE----NMWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~------------~~----~~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|+++.|.|..            ..    +.|+|++........... ..|+...+..|.|.++..+|+|.|+|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence            46889999999999997            22    899997422222221111 25888889999999999999999999


Q ss_pred             EEEcCCCccEEEEEEEE
Q psy3045          86 VVNNSVGGESVETVLTV  102 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V  102 (267)
                      .+.|+.......+.|+|
T Consensus        88 ~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          88 VLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EECCCCcceEEEEEEEC
Confidence            99998876666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.29  E-value=3.2e-11  Score=76.88  Aligned_cols=81  Identities=31%  Similarity=0.507  Sum_probs=57.0

Q ss_pred             CCcccCCCCceeEEecCC---CeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGG---ESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g---~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y   83 (267)
                      +|.|...|  ....+.++   ..+.|.|.+.|     +.|++++....     ....++...++.|.|.++. ..|+|.|
T Consensus         1 ~P~f~~~P--~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~-----~~~~~~~~~~g~L~I~~~~~~~D~G~Y   73 (93)
T cd05849           1 GPVFEEQP--IDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDID-----LTNDRYSMVGGNLVINNPDKYKDAGRY   73 (93)
T ss_pred             CCEEEECC--CCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEcc-----CCCCeEEEECCEEEECcCCcCCCCEEE
Confidence            36777666  45555544   48999999999     99999633211     1233555567789999885 5899999


Q ss_pred             EEEEEcCCCcc-EEEEEE
Q psy3045          84 LCVVNNSVGGE-SVETVL  100 (267)
Q Consensus        84 ~C~~~~~~~~~-~~~~~l  100 (267)
                      +|.|.|..|.. +..+.|
T Consensus        74 ~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          74 VCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEEeCcceEEEccEEE
Confidence            99999999874 334443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.28  E-value=2.6e-11  Score=78.40  Aligned_cols=80  Identities=20%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC--CceE--EEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL--NDRV--KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~--~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      ...+..|+.+.|.|.+.+     +.|+|++...........  ...+  ....++|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            568889999999999999     999997432211110000  0000  1123589999999999999999999999988


Q ss_pred             EEEEEEEEE
Q psy3045          95 SVETVLTVT  103 (267)
Q Consensus        95 ~~~~~l~V~  103 (267)
                      +..+.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888887764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.28  E-value=4e-11  Score=76.19  Aligned_cols=73  Identities=27%  Similarity=0.533  Sum_probs=51.7

Q ss_pred             CCeEEEEEEecc-----eeeeeccc--Ccceecc-cc--------CCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          30 GESFALLCEAQE-----NMWFKFIE--GSSRKVA-VP--------LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~--~~~~~~~-~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      |+.++|.|.+.+     ++|+|++.  +...... ..        ...........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999     99999631  1110000 00        00111112357999999999999999999999999


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ....+.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.28  E-value=1.4e-11  Score=72.98  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=47.8

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      +.|.|.+.+     +.|+|++....        .  ....+.|.|.++..+|+|.|+|.+.|..|..+..+.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~--------~--~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLIS--------G--KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECc--------c--cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999     99999643221        1  1134589999999999999999999999987777776654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.28  E-value=2.6e-11  Score=73.85  Aligned_cols=67  Identities=27%  Similarity=0.419  Sum_probs=52.6

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++++..      +....++.. .+.+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTEL------LTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEE------cccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            789999999988     999996332      122333333 3467999999999999999999999999888777764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.28  E-value=4.2e-11  Score=75.59  Aligned_cols=74  Identities=32%  Similarity=0.436  Sum_probs=54.4

Q ss_pred             eeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCcc-
Q psy3045          23 IRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   94 (267)
                      .+..+.+|+++.|.|.+ .+     +.|++++.....     ...+.. ..++.|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL-----DNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC-----CCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            67889999999999997 44     999996332111     122222 235689999999999999999999998874 


Q ss_pred             EEEEEEE
Q psy3045          95 SVETVLT  101 (267)
Q Consensus        95 ~~~~~l~  101 (267)
                      +..+.|.
T Consensus        79 s~~~~l~   85 (86)
T cd05724          79 SAAARLS   85 (86)
T ss_pred             eeeEEEE
Confidence            4555544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.28  E-value=2.7e-11  Score=76.22  Aligned_cols=76  Identities=26%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             CeEEEEEEecc-------eeeeecccCcceecc-ccCCce-EEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          31 ESFALLCEAQE-------NMWFKFIEGSSRKVA-VPLNDR-VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      +++.|.|.+.+       +.|++++........ ..+..+ .....++|.|.+++..|+|.|+|.+.|..|..+....|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            57899999998       589996332111000 000001 112456899999999999999999999999999999999


Q ss_pred             EEecc
Q psy3045         102 VTAPL  106 (267)
Q Consensus       102 V~~~~  106 (267)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            88753

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.27  E-value=2.4e-11  Score=74.73  Aligned_cols=58  Identities=29%  Similarity=0.575  Sum_probs=47.1

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCC----CCCeEEEEEEEcCCCCceE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~  209 (267)
                      +.|.|.+.|.|.|.++|++++..+...         ....|.|..+..    +|+|.|.|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            478999999999999999999876421         346788887743    6899999999999987543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=7.7e-11  Score=73.44  Aligned_cols=63  Identities=24%  Similarity=0.488  Sum_probs=52.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      |.+..+..|+++.|.|.+.+ +.+.+.|++||.++..+.      ...|.|.+++.+|+|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            44558889999999999754 677999999999886542      3579999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.26  E-value=7e-11  Score=75.00  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~   97 (267)
                      ..+.+.+|+++.|.|.+.+    +.|++++.....  ......++......|.|.+++.+|+|.|+|.+.+..+. ....
T Consensus         4 ~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQR--KEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             eEEEEECCCcEEEEEeCCCCCceEEEEECCccccc--ccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            6778999999999999877    999997443211  11112345455567999999999999999999876543 5566


Q ss_pred             EEEEEE
Q psy3045          98 TVLTVT  103 (267)
Q Consensus        98 ~~l~V~  103 (267)
                      ..|.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.26  E-value=1.3e-11  Score=75.21  Aligned_cols=65  Identities=31%  Similarity=0.344  Sum_probs=49.0

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEe-----eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVS-----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |.|.|.+.|     +.|+|++....     ....++....     .+|.|.++..+|+|.|+|.|.|..|..+....|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLT-----HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECC-----CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999     99999643221     1123333321     26999999999999999999999999888877764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.25  E-value=5.3e-11  Score=72.44  Aligned_cols=65  Identities=26%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEE--e---eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV--S---GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~--~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |.|.|.+.+     +.|+|++....     ....++...  +   .+|.|.++..+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~-----~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQ-----YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECc-----CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999998     99999632111     112343321  1   27999999999999999999999999888887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.25  E-value=4.5e-11  Score=73.48  Aligned_cols=61  Identities=18%  Similarity=0.487  Sum_probs=49.4

Q ss_pred             EEEEeEeCC-CCCceEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         152 AQFTCKYEG-NPVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      +.|.|.+.+ .|.+.+.|++++..+...             ....|.|.++..+|+|.|+|.+.|..|....+..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999864 577899999999887532             1256899999999999999999999987766543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.25  E-value=3.9e-11  Score=72.50  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      +.|.|.+.+     +.|+|++...      ....+......+|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l------~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLI------SEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEEC------CCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            479999998     9999964321      2223444556789999999999999999999999987777776654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.25  E-value=4.8e-11  Score=73.27  Aligned_cols=58  Identities=28%  Similarity=0.568  Sum_probs=46.1

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCC----CCCeEEEEEEEcCCCCceE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~  209 (267)
                      +.|.|.+.|.|.|+++|++++.++...         ..+.|.|..+..    .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            478999999999999999999876321         346777776654    3789999999999987654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.25  E-value=5.9e-11  Score=73.99  Aligned_cols=73  Identities=27%  Similarity=0.442  Sum_probs=52.3

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccc--cCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAV--PLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      |+++.|.|.+.+     +.|+++..+.......  ....++. .....|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            789999999988     9999964322111100  1111222 2346899999999999999999999999888777776


Q ss_pred             E
Q psy3045         102 V  102 (267)
Q Consensus       102 V  102 (267)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03376 BARF1; Provisional

Probab=99.24  E-value=1.2e-10  Score=80.74  Aligned_cols=122  Identities=19%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCc-----------ceeccccCCceEEE----EeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGS-----------SRKVAVPLNDRVKQ----VSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~-----------~~~~~~~~~~~~~~----~~~~l~i~~~~~~d   79 (267)
                      ..+.+..|+.+.|.|....        +.|+|...+.           .......+..++..    ++-+|.|.+++.+|
T Consensus        19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   98 (221)
T ss_pred             cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence            3677889999999999884        9999953210           01111123333332    34589999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      .|.|+|.+..........-.|++..+....+.....                             ....-+..++.|.+.
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~-----------------------------dFp~~~~~~i~C~sg  149 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS-----------------------------QFPDFSVLTVTCTVN  149 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc-----------------------------cCCCCCeeEEEEecC
Confidence            999999998766555444445444322211111000                             111135578999988


Q ss_pred             CCCCceEEEEECCc
Q psy3045         160 GNPVKTISWMKDGK  173 (267)
Q Consensus       160 ~~p~~~~~W~~~~~  173 (267)
                      |+|.|.+.|..+..
T Consensus       150 gfP~P~~~Wle~~~  163 (221)
T PHA03376        150 AFPHPHVQWLMPEG  163 (221)
T ss_pred             CcCCchheeccccC
Confidence            89999999997543

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.24  E-value=5e-11  Score=74.28  Aligned_cols=62  Identities=23%  Similarity=0.367  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEeEeCC-CCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.+|+.++|.|.+.+ .+...+.|++++..+.. .....|.|..+..+|+|.|+|.+.+..+.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence            6888999999999864 45678999999987754 24578999999999999999999998764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.24  E-value=8.9e-11  Score=71.97  Aligned_cols=70  Identities=24%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++++...  ... .........+..|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i--~~~-~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPI--EIA-PTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEc--ccc-CCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            789999999999     9999963211  110 111122234458999999999999999999999999988888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.24  E-value=7.2e-11  Score=73.80  Aligned_cols=75  Identities=31%  Similarity=0.399  Sum_probs=54.7

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      .+.+..|+++.|.|.+.+     +.|++++.......    ..........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc----cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence            456778999999999987     99999643221110    011112346899999999999999999999999877766


Q ss_pred             EEEE
Q psy3045          99 VLTV  102 (267)
Q Consensus        99 ~l~V  102 (267)
                      .|.|
T Consensus        79 ~v~v   82 (82)
T cd05856          79 KVDV   82 (82)
T ss_pred             EEeC
Confidence            6653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.24  E-value=1.3e-10  Score=72.65  Aligned_cols=67  Identities=22%  Similarity=0.451  Sum_probs=51.0

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCC----------C---CCCeEEeccCCCCCCeEEEEEEEcCCC--CceEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPD----------H---NEPVFRIDSVRKEDKGMYQCVIRNEQE--SAQASGEL  213 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~----------~---~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l  213 (267)
                      |+++.|.|.+.+.|.+.+.|++.++....          .   ..+.|.|.+++.+|+|.|.|.|.+..+  ....+..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            68899999999999999999986643211          1   136799999999999999999998765  33344444


Q ss_pred             EE
Q psy3045         214 KL  215 (267)
Q Consensus       214 ~v  215 (267)
                      .|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            43

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.24  E-value=1e-10  Score=73.13  Aligned_cols=72  Identities=26%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCce----EEEEeeEEEEeecccCCCeeEEEEEEcCCC--ccEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDR----VKQVSGTLIIKEAKVEDSGKYLCVVNNSVG--GESVET   98 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~   98 (267)
                      |++++|.|.+.+     +.|++.+....  .......+    .......|.|.+++.+|+|.|+|.+.+..+  .....+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv   78 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIG--KGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV   78 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCC--CCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence            789999999987     89997533221  11111011    112356899999999999999999998766  456666


Q ss_pred             EEEEE
Q psy3045          99 VLTVT  103 (267)
Q Consensus        99 ~l~V~  103 (267)
                      .|+|.
T Consensus        79 ~i~V~   83 (84)
T cd05861          79 NITVH   83 (84)
T ss_pred             EEEEe
Confidence            66664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.24  E-value=1.1e-10  Score=73.56  Aligned_cols=70  Identities=30%  Similarity=0.628  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|..+..+|.|.|.|.+.|..|....++.|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            5667999999999999999999999998776422          123688889999999999999999988776666554

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.23  E-value=1.1e-10  Score=75.39  Aligned_cols=81  Identities=21%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVE   78 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~   78 (267)
                      ||.|.. +  ....+.+|+++.|.|.+.+      +.|++++.....    ....++..        ..+.|.|.++..+
T Consensus         2 pp~i~~-~--~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~----~~~~r~~i~~~~~~~~~~s~L~I~~v~~~   74 (98)
T cd05758           2 PPIITS-E--ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELES----GSSGRYTVETDPSPGGVLSTLTISNTQES   74 (98)
T ss_pred             CCeEcC-C--CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccC----CCCCCEEEEEecCCCceEEEEEECCcccc
Confidence            576754 3  5677899999999999988      899996431111    01122221        1247999999995


Q ss_pred             C-CeeEEEEEEcCCCccEEEEEE
Q psy3045          79 D-SGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        79 d-~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      | .|.|+|.|.|..|.....+.|
T Consensus        75 d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          75 DFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             ccceeEEEEEEcCCCcccEEEEe
Confidence            5 899999999999987766654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.23  E-value=1e-10  Score=74.39  Aligned_cols=73  Identities=27%  Similarity=0.492  Sum_probs=51.1

Q ss_pred             CCeEEEEEEecc-----eeeeeccc--Ccceecccc------CCceEE---EEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          30 GESFALLCEAQE-----NMWFKFIE--GSSRKVAVP------LNDRVK---QVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~--~~~~~~~~~------~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      |+++.|.|.+.+     +.|+++..  +........      ......   .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            789999999988     99998531  111000000      000000   11257999999999999999999999999


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ......|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.23  E-value=7.5e-11  Score=72.40  Aligned_cols=59  Identities=31%  Similarity=0.555  Sum_probs=46.2

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCC---------CCCCeEEeccCC----CCCCeEEEEEEEcCCCCceEE
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVR----KEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +.|.|.+.|.|.|.++|+|++..+..         .....|.|..+.    .+|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            46899999999999999999986521         134678887653    246999999999999876543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=7.9e-11  Score=72.92  Aligned_cols=57  Identities=28%  Similarity=0.519  Sum_probs=46.0

Q ss_pred             EEEEeEeCCCCCceEEEEECCccC-C--------C-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPV-P--------D-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~-~--------~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ++|.|.+.|.|.|.+.|++++... .        .     .....|.|.++..+|+|.|.|.|.|..|...
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   71 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADA   71 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence            478999999999999999964321 0        0     1346899999999999999999999988763

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.22  E-value=1e-10  Score=75.21  Aligned_cols=76  Identities=28%  Similarity=0.340  Sum_probs=53.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCc-eEEEEeeEEEEeec-----ccCCCeeEEEEEEcC-
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEA-----KVEDSGKYLCVVNNS-   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-   90 (267)
                      .+..+.+|+++.|.|.+.+     +.|+|++.....    .... .....+++|.|.++     ...|.|.|+|.+.|. 
T Consensus         7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~----~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~   82 (95)
T cd05722           7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNL----VSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDS   82 (95)
T ss_pred             CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcc----ccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence            6778889999999999988     999996432111    1111 12223456777666     588999999999999 


Q ss_pred             CCcc-EEEEEEEE
Q psy3045          91 VGGE-SVETVLTV  102 (267)
Q Consensus        91 ~~~~-~~~~~l~V  102 (267)
                      .|.. +..+.|.|
T Consensus        83 ~G~~~s~~~~l~v   95 (95)
T cd05722          83 LGSIVSRTARLTV   95 (95)
T ss_pred             cCcEEEeeeEEeC
Confidence            8874 55666553

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.22  E-value=1.1e-10  Score=70.61  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=49.4

Q ss_pred             eEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          32 SFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        32 ~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      ++.|.|.+.|     +.|++++...      ....++. ..+..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~------~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMV------IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeEC------CCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999998     9999963311      1122333 24457889999999999999999999999888777754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.22  E-value=3.2e-10  Score=72.30  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=58.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCC---------------CCCeEEeccCCCCC-CeEEEEEEEc
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDH---------------NEPVFRIDSVRKED-KGMYQCVIRN  202 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~g~y~C~~~~  202 (267)
                      ....+.+.+|+.+.|.|.+.+.|+| .+.|.+++..+...               ..+.|.|.++...| .|.|.|.|.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            3455588899999999999888765 78898877665432               34679999998777 7999999999


Q ss_pred             CCCCceEEEEE
Q psy3045         203 EQESAQASGEL  213 (267)
Q Consensus       203 ~~~~~~~~~~l  213 (267)
                      ..|.....++|
T Consensus        87 ~~G~d~~~i~L   97 (98)
T cd05898          87 SFGSGTAIIQL   97 (98)
T ss_pred             CCccceEEEEe
Confidence            99988776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.22  E-value=2.2e-10  Score=72.65  Aligned_cols=73  Identities=23%  Similarity=0.405  Sum_probs=55.8

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCC-CceEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQE-SAQASG  211 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~  211 (267)
                      ....+.+|+.+.|.|.+.+ |.+.+.|++++..+...         ....|.|.++..+|+|.|.|.+.+..+ ....+.
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~   82 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY   82 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence            3447888999999999876 77899999998766432         124689999999999999999987653 333345


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .+.|
T Consensus        83 ~l~V   86 (89)
T cd04979          83 SLNV   86 (89)
T ss_pred             EEEE
Confidence            5554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.21  E-value=8.3e-11  Score=71.14  Aligned_cols=65  Identities=25%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      +.|.|.+.|     +.|++++.....     ........+.+|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP-----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC-----CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            479999999     999996432211     11122234568999999999999999999999999888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=1.6e-10  Score=70.63  Aligned_cols=68  Identities=25%  Similarity=0.439  Sum_probs=50.7

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+++.|.|.+.+     +.|++.++ ..    +....+. ...+++|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~-~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDG-KL----ISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCC-EE----ecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            789999999988     99997422 11    1111222 234568999999999999999999999998877776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.20  E-value=4.9e-11  Score=72.88  Aligned_cols=65  Identities=29%  Similarity=0.329  Sum_probs=48.3

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEE--E---eeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--V---SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      +.|.|.+.+     +.|++++....  .   ...++..  .   ..+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~--~---~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLT--Y---NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECC--C---CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999998     99999643211  0   1223322  1   126999999999999999999999999888877764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.20  E-value=1.2e-10  Score=70.15  Aligned_cols=63  Identities=29%  Similarity=0.448  Sum_probs=48.4

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      ++|.|.+.+     +.|++++...      . ..+.. ..+.+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~------~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGEL------P-KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccC------C-CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999988     9999963211      1 12222 24568999999999999999999999998887777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.20  E-value=3.2e-10  Score=72.30  Aligned_cols=81  Identities=23%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVE   78 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~   78 (267)
                      ||.|...   ....+.+|+++.|.|.+.+      +.|....+....    ....++..        ..+.|.|.++...
T Consensus         2 pP~i~~~---~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~----~~~~r~~I~~~~~~~g~~S~L~I~~~~~~   74 (98)
T cd05898           2 PPIISSE---QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLES----GTSERYTVERTSTGSGVLSTLTINNIMEA   74 (98)
T ss_pred             CCEEecC---ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccC----CCCCCEEEEEEccCCCcEEEEEECCCccc
Confidence            6767433   6889999999999999966      788775332111    11223321        3468999999887


Q ss_pred             C-CeeEEEEEEcCCCccEEEEEE
Q psy3045          79 D-SGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        79 d-~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      | .|.|.|.|.|..|.+...+.|
T Consensus        75 d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          75 DFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             cCCcEEEEEEEeCCccceEEEEe
Confidence            7 799999999999998777665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.19  E-value=1e-10  Score=71.46  Aligned_cols=65  Identities=32%  Similarity=0.372  Sum_probs=49.7

Q ss_pred             eEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          32 SFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        32 ~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      .+.|.|.+.+     +.|++++...      ....++..    ....|.|.++...|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPL------KLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEc------CCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            4789999999     9999964321      12223322    2468999999999999999999999999888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.19  E-value=2.3e-10  Score=72.92  Aligned_cols=60  Identities=23%  Similarity=0.483  Sum_probs=49.2

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCC-CCCCeEEEEEEEcCCCCce
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~  208 (267)
                      |..+.|.|.+.|.|.+.++|++++..+...       ....|.|.++. .+|+|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            467999999999999999999999887422       13578887776 4899999999999988654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.19  E-value=1.3e-10  Score=73.05  Aligned_cols=70  Identities=21%  Similarity=0.481  Sum_probs=54.8

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ....+.+|++++|.|.+.+      +.|++++.+.        ..+....++.|.|.+++.+|+|.|+|.+.|..|....
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL--------PSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC--------CCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            6788999999999999853      9999964331        1122233568999999999999999999999988776


Q ss_pred             EEEE
Q psy3045          97 ETVL  100 (267)
Q Consensus        97 ~~~l  100 (267)
                      .+.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            6554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=1.9e-10  Score=72.87  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=56.9

Q ss_pred             EEecCCCEEEEeEeCC-----CCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEG-----NPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|....|.|...+     .|.+.+.|+|++.++...     ....|.|.++..+|+|.|+|.+.+..+.........
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t   85 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRT   85 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEE
Confidence            6778999999998643     257799999999988654     357899999999999999999999877665554444


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      +
T Consensus        86 ~   86 (92)
T cd05757          86 I   86 (92)
T ss_pred             E
Confidence            3

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.19  E-value=2.6e-10  Score=72.73  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=52.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEEE-----eeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      .+..+.+|+++.|.|.+.+     +.|++++.....  ........|+...     ..+|.|.++..+|+|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            6789999999999999999     999986321100  0011122344322     468999999999999999999873


Q ss_pred             CCccEEEEEE
Q psy3045          91 VGGESVETVL  100 (267)
Q Consensus        91 ~~~~~~~~~l  100 (267)
                      . .......|
T Consensus        85 ~-~~~~~~~~   93 (95)
T cd05882          85 P-VRTAKATV   93 (95)
T ss_pred             c-cccEEEEE
Confidence            2 33444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.18  E-value=1.1e-10  Score=72.00  Aligned_cols=66  Identities=29%  Similarity=0.313  Sum_probs=48.3

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      |+++.|.|.+.+     +.|++++...      ....++.    .....|.|.++..+|+|.|+|.+.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHV------PDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeEC------CCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            789999999988     9999863211      1122222    123689999999999999999999999876554443


Q ss_pred             E
Q psy3045         101 T  101 (267)
Q Consensus       101 ~  101 (267)
                      .
T Consensus        75 ~   75 (78)
T cd05743          75 I   75 (78)
T ss_pred             E
Confidence            3

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.18  E-value=3.4e-10  Score=72.19  Aligned_cols=61  Identities=21%  Similarity=0.476  Sum_probs=50.2

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccC---------CC---------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PD---------HNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~---------~~---------~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++++..+         ..         .....|.|.++..+|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4458889999999999999999999998876532         00         1236899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.17  E-value=2.2e-10  Score=68.70  Aligned_cols=63  Identities=25%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      |++++|.|.+.+     +.|++++..      +....++......|.|.++  .|+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~------l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEE------LTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEE------CCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            789999999999     999996321      1122233334457888886  47999999999999987666554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.17  E-value=1.5e-10  Score=71.47  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      |...|  .++.+.+|+++.|.|.+.|      +.|++++....  .      +.....+.|.|..+  .|+|.|.|.|.|
T Consensus         1 f~~~P--~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~--~------~~~~~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           1 FTVEP--EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG--D------PPAPSPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CcCCC--CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC--C------CCCCCCCEEEEccc--cCCeEEEEEEEe
Confidence            34455  6889999999999999999      89999633111  1      11123357888776  578999999999


Q ss_pred             CCCcc
Q psy3045          90 SVGGE   94 (267)
Q Consensus        90 ~~~~~   94 (267)
                      ..|..
T Consensus        69 ~~G~~   73 (81)
T cd05749          69 AKGVT   73 (81)
T ss_pred             ccCcE
Confidence            99864

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.17  E-value=2.4e-10  Score=70.03  Aligned_cols=67  Identities=28%  Similarity=0.415  Sum_probs=49.4

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      ++|.|.+.+     +.|++++....   ......++..  .+..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDF---PAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccC---CcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999988     99999643211   1111223322  3458999999999999999999999998888888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.16  E-value=3.1e-10  Score=71.13  Aligned_cols=73  Identities=23%  Similarity=0.373  Sum_probs=51.4

Q ss_pred             CCeEEEEEEecc-------eeeeecccCcceeccc---cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045          30 GESFALLCEAQE-------NMWFKFIEGSSRKVAV---PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV   99 (267)
Q Consensus        30 g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   99 (267)
                      |+++.|.|.+.+       +.|.+++.........   ..........+.|.|.+++.+|+|.|+|.+.|..+..+....
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            789999999987       8998753322111000   000111124568999999999999999999999988887777


Q ss_pred             EEE
Q psy3045         100 LTV  102 (267)
Q Consensus       100 l~V  102 (267)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.16  E-value=4.2e-10  Score=70.15  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      .+..+..|+++.|.|.+.+    +.|++++....     ....++...++.|.|.+++.+|+|.|+|.+...
T Consensus         4 ~~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~-----~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKSNLARVVWKFDGKVLT-----PESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             ceEEEECCCCEEEEEECCCCCCeEEEEECCEECC-----CCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            6889999999999999876    99999643211     112456667778999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.16  E-value=6.7e-11  Score=73.71  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~   95 (267)
                      +...+.+|++|+|.|.+..      +.|++++...      ..    ...+..|.|.+++.+|+|.|+|.+.+..+. .+
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~------~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK------KY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEc------cc----cCCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            3457999999999999843      8999964211      11    112457999999999999999999998875 34


Q ss_pred             EEEEEE
Q psy3045          96 VETVLT  101 (267)
Q Consensus        96 ~~~~l~  101 (267)
                      ..+.|+
T Consensus        77 ~~~~i~   82 (83)
T cd05753          77 EPVSIT   82 (83)
T ss_pred             CCEEEE
Confidence            444444

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.14  E-value=1.9e-10  Score=69.12  Aligned_cols=62  Identities=34%  Similarity=0.510  Sum_probs=47.2

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      |.|.|.+.+     +.|++++..      +....++.. .++.|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQ------VTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEE------CCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            579999988     999996321      111223332 35689999999999999999999999988776665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.11  E-value=4.5e-10  Score=67.30  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      +.|.|.+.|     +.|+|++....      ...++ ..+..|.|.++..+|+|.|+|.+.|..|.......+.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~------~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIV------LNHTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECC------CCCEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            478999999     99999643221      11122 234579999999999999999999999987766666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.10  E-value=6.6e-10  Score=65.36  Aligned_cols=58  Identities=43%  Similarity=0.854  Sum_probs=49.0

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +|+.+.|.|.+.+.+.+.+.|++++..+..     .....|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            378899999988888889999998877652     2456899999999999999999988653

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.10  E-value=3.6e-10  Score=68.50  Aligned_cols=65  Identities=28%  Similarity=0.432  Sum_probs=48.1

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      +.|.|.+.+     +.|++++....     ............|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELP-----ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECC-----CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            579999998     99999632111     011112223468999999999999999999999998877777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.09  E-value=5.9e-10  Score=71.33  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      .++.+.+|+++.|.|.+.+     +.|++.+.....  ........|+..     ...+|.|.+++.+|+|.|+|.+...
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            6889999999999999987     999863110000  000112334332     2358999999999999999999874


Q ss_pred             CCccEEEEEEEE
Q psy3045          91 VGGESVETVLTV  102 (267)
Q Consensus        91 ~~~~~~~~~l~V  102 (267)
                      .+ ......|.|
T Consensus        85 ~~-~~~~~~l~v   95 (95)
T cd07701          85 PV-KTSKAYLTV   95 (95)
T ss_pred             cC-ccEEEEEEC
Confidence            33 355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.08  E-value=1e-09  Score=68.82  Aligned_cols=74  Identities=24%  Similarity=0.346  Sum_probs=51.2

Q ss_pred             CCeEEEEEEecc-------eeeeecccCcceeccccC----CceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          30 GESFALLCEAQE-------NMWFKFIEGSSRKVAVPL----NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        30 g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      |+++.|.|.+.+       +.|...++..........    ........+.|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999974       799875332211110010    001122456899999999999999999999888777777


Q ss_pred             EEEEE
Q psy3045          99 VLTVT  103 (267)
Q Consensus        99 ~l~V~  103 (267)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.07  E-value=1.3e-09  Score=69.15  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             eEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          24 RFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ...+.+|.++.|.|...+          +.|+|++..      +....+....++.|.|.++..+|+|.|+|.+.+..+.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~------i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL------LEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEE------CCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            467889999999997532          999997432      1112222226679999999999999999999998887


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ....+...+
T Consensus        78 ~~~~~t~t~   86 (92)
T cd05757          78 KQYNVTRTI   86 (92)
T ss_pred             EEEEEEEEE
Confidence            655544443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.07  E-value=9.8e-10  Score=67.46  Aligned_cols=67  Identities=25%  Similarity=0.416  Sum_probs=49.6

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      +.|.|.+.+     +.|++++....  .  ....++.  .....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~--~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDIT--P--KLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECC--C--CCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            468999998     99999633211  1  1112222  233579999999999999999999999998888888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.07  E-value=8.7e-10  Score=68.22  Aligned_cols=70  Identities=37%  Similarity=0.570  Sum_probs=48.7

Q ss_pred             EEEEEEecc-----eeeeecccCcce-ec-cccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSR-KV-AVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~-~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V  102 (267)
                      |+|.|.+.+     +.|++++..... .. ......++. ..+++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            579999888     999996332111 11 111234443 345789999999999999999999999875 66666543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.06  E-value=2.6e-09  Score=68.34  Aligned_cols=71  Identities=25%  Similarity=0.425  Sum_probs=52.4

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEE--------CCccC-CC---------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMK--------DGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~--------~~~~~-~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++        ++... ..         .....|.|.++..+|+|.|.|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            44588999999999999999999999975        22111 10         12357899999999999999999875


Q ss_pred             CCCceEEEEE
Q psy3045         204 QESAQASGEL  213 (267)
Q Consensus       204 ~~~~~~~~~l  213 (267)
                      ... ..+..|
T Consensus        85 ~~~-~~~~~l   93 (95)
T cd07701          85 PVK-TSKAYL   93 (95)
T ss_pred             cCc-cEEEEE
Confidence            333 344444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.05  E-value=3.1e-09  Score=68.25  Aligned_cols=78  Identities=14%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecc--ccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVA--VPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~--~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      +++.+.+|++++|.|.+.+     +.|++..........  .....|+..     ....|.|.+++.+|+|.|+|.+...
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            6788999999999999876     999863211000000  011234332     2357999999999999999999875


Q ss_pred             CCccEEEEEEE
Q psy3045          91 VGGESVETVLT  101 (267)
Q Consensus        91 ~~~~~~~~~l~  101 (267)
                      .. ....+.|.
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            43 34444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.05  E-value=1.2e-09  Score=65.60  Aligned_cols=64  Identities=19%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      +.|.|.+.|     +.|+|++....     ....++...+.+|.|.++..+|+|.|+|.+.+..........++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAA-----EKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECC-----CCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            478999999     99999742111     11133444556899999999999999999999866655444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>PHA03376 BARF1; Provisional

Probab=99.04  E-value=3.6e-09  Score=73.47  Aligned_cols=111  Identities=16%  Similarity=0.319  Sum_probs=71.9

Q ss_pred             EEecCCCEEEEeEeC---CCCCceEEEEECCc----cC----------------------CCCCCCeEEeccCCCCCCeE
Q psy3045         145 TIDFGRPAQFTCKYE---GNPVKTISWMKDGK----PV----------------------PDHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~---~~p~~~~~W~~~~~----~~----------------------~~~~~~~l~i~~~~~~d~g~  195 (267)
                      .+..|+.+.|.|.-.   ..+...|.|+|.+.    .+                      ...++.+|.|.++..+|.|+
T Consensus        22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt  101 (221)
T PHA03376         22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN  101 (221)
T ss_pred             hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence            556699999999854   23566899999532    11                      01245678999999999999


Q ss_pred             EEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEEC
Q psy3045         196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD  258 (267)
Q Consensus       196 y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~  258 (267)
                      |+|.+...........++.+.   .|-.+.+..........+...+.|.+.|+|.|.+.|+-+
T Consensus       102 Y~C~fQkge~~~~k~ehLt~V---~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        102 YLCRMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             EEEEEEcCCCceeeeeeeeee---ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence            999998765443333333332   222222222111112255678999988999999999864

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.04  E-value=1.7e-09  Score=66.49  Aligned_cols=66  Identities=24%  Similarity=0.410  Sum_probs=46.2

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCce--EEEEeeEEEEeecccCCCeeEEEEEEcCCCccE--EEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES--VETVLTVT  103 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~  103 (267)
                      |+|.|.+.+     +.|+|++...  .   ....+  +......|.|.++..+|+|.|+|.+.|..|...  ..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l--~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPL--S---DGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEEC--C---CCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            579999998     9999963211  1   11112  222345899999999999999999999999753  44555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.02  E-value=1.3e-09  Score=69.08  Aligned_cols=62  Identities=18%  Similarity=0.344  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccC-C-------------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      .+..|++++|.|...+.+.+.+.|++++... .                         ......|.|.++..+|+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            5678999999999998888999999655221 0                         1122569999999999999999


Q ss_pred             EEEcCCCC
Q psy3045         199 VIRNEQES  206 (267)
Q Consensus       199 ~~~~~~~~  206 (267)
                      .+.+..++
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.02  E-value=2.7e-09  Score=65.24  Aligned_cols=65  Identities=14%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             EEEEecc-----eeeeecccCcceeccccCCceE-----EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          35 LLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-----KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        35 l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      |.|.+.|     ++|+|++....  .......++     ....+.|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILN--ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECC--CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            6788888     99999743221  111111111     12345899999999999999999999999887766653

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.02  E-value=2.8e-09  Score=65.93  Aligned_cols=65  Identities=14%  Similarity=0.213  Sum_probs=44.8

Q ss_pred             EEEEecc-----eeeeecccCcceeccccCCceEE-------EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          35 LLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        35 l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      |.|.+.+     ++|+|++....  ........+.       ...+.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~--~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLN--ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECc--CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            6788888     99999643221  1111111111       1245799999999999999999999999987766654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.02  E-value=4.1e-09  Score=67.10  Aligned_cols=75  Identities=25%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             CcccCCCCceeEEecC---CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc-CCCeeEE
Q psy3045          14 PTFSSVSDIIRFKKPG---GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDSGKYL   84 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~---g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~   84 (267)
                      |.|...|  .+..+.+   |+++.|.|.+.+     +.|++++....    .....++...++.|.|.++.. .|+|.|+
T Consensus         2 P~f~~~p--~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~----~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~   75 (91)
T cd04967           2 PVFEEQP--DDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEID----DEPDSRYSLVGGNLVISNPSKAKDAGRYQ   75 (91)
T ss_pred             CeeEeCC--CCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECC----CCCCCCEEEECCEEEEecCCccCCCEEEE
Confidence            5666666  4554443   467999999987     99999643211    111234445567899988875 8999999


Q ss_pred             EEEEcCCCcc
Q psy3045          85 CVVNNSVGGE   94 (267)
Q Consensus        85 C~~~~~~~~~   94 (267)
                      |.+.|..|..
T Consensus        76 C~a~N~~G~~   85 (91)
T cd04967          76 CLASNIVGTV   85 (91)
T ss_pred             EEEEcCCCEE
Confidence            9999999864

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.01  E-value=2.3e-09  Score=65.75  Aligned_cols=64  Identities=30%  Similarity=0.556  Sum_probs=43.6

Q ss_pred             EEEEEEecc------eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          33 FALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        33 v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      +.|.|.+.+      +.|++++....  .......++.    ...+.|.|.++...|+|.|+|.+.|..|.....+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIG--AKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccc--cCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            479998763      89999643221  1111112222    1346899999999999999999999998766544

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.01  E-value=1.8e-09  Score=68.34  Aligned_cols=63  Identities=19%  Similarity=0.429  Sum_probs=52.1

Q ss_pred             EEecCCCEEEEeEe-CCCCCceEEEEECCccC--CCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         145 TIDFGRPAQFTCKY-EGNPVKTISWMKDGKPV--PDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       145 ~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~--~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .+.+|+.+.|.|.. .+.|.+.+.|++++.++  ..+       .++.|.+.++..+|+|.|+|.|+|.....
T Consensus        14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            68889999999975 57799999999998754  111       35889999999999999999999986443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.00  E-value=3e-09  Score=64.87  Aligned_cols=66  Identities=39%  Similarity=0.569  Sum_probs=47.6

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEE
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTV  102 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V  102 (267)
                      ++|.|.+.|     +.|++++....    .....++.. .++.|.|.++..+|+|.|+|.+.|..|. .+....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~----~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVD----TTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECc----cCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            479999999     99999632111    011233332 3557999999999999999999999987 466666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.00  E-value=4.4e-09  Score=65.05  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE-cCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN-NSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~   97 (267)
                      ...++.+|+++.|.|...+    +.|++++..      +..+.++......|.|..++..|+|.|.|.+. ++.......
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~------l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTP------LNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCCccEEEEECCcc------cCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEE
Confidence            5789999999999999998    999997443      23346777677779999999999999999986 333333444


Q ss_pred             EEEEE
Q psy3045          98 TVLTV  102 (267)
Q Consensus        98 ~~l~V  102 (267)
                      +.|.|
T Consensus        78 y~l~v   82 (85)
T cd05872          78 YSLNV   82 (85)
T ss_pred             EEEEE
Confidence            44444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.99  E-value=3.7e-09  Score=66.43  Aligned_cols=78  Identities=27%  Similarity=0.413  Sum_probs=53.6

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      ...+.+|+++.|.|.+.+     +.|++++.......... ..........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~   81 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG-GYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY   81 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCcee-EEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence            356779999999999987     99999632211000000 000112234799999999999999999999988877666


Q ss_pred             EEEE
Q psy3045          99 VLTV  102 (267)
Q Consensus        99 ~l~V  102 (267)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05729          82 KVDV   85 (85)
T ss_pred             EEeC
Confidence            6653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.99  E-value=9.6e-10  Score=68.25  Aligned_cols=60  Identities=30%  Similarity=0.634  Sum_probs=50.7

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+.+|+.+.|.|.+.+.|...+.|++++..+.... ..+.+..+..+|.|.|+|.+.+..+
T Consensus        10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-NGLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-SEEEESSEEGGGTEEEEEEEEETTE
T ss_pred             EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-eeeeeeeeccccCEEEEEEEEeCCC
Confidence            68889999999999988889999999988776332 2377788899999999999998654

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.98  E-value=4e-09  Score=66.17  Aligned_cols=68  Identities=21%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             CCCEEEEeEeCCCC--CceEEEEECCccCCC---------------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         149 GRPAQFTCKYEGNP--VKTISWMKDGKPVPD---------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       149 g~~v~l~C~~~~~p--~~~~~W~~~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      |+++.|.|.+.+.+  ...+.|.+.+.....               ...+.|.|.++..+|+|.|+|.|.|..+....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            68899999997654  558899886653211               1246799999999999999999999887777677


Q ss_pred             EEEEe
Q psy3045         212 ELKLG  216 (267)
Q Consensus       212 ~l~v~  216 (267)
                      .+.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            66664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.98  E-value=9.6e-09  Score=65.10  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=51.4

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC----CC-----CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP----DH-----NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASG  211 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~----~~-----~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~  211 (267)
                      +.+.+|+.+.|.|.. +.|.+.+.|++++.  ...    ..     ....|.|..+..+|+|.|.|.+.+ ..+......
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            367889999999996 47888999998432  211    11     235699999999999999999985 444444455


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      +|.|
T Consensus        85 ~l~v   88 (91)
T cd05871          85 TLHV   88 (91)
T ss_pred             EEEE
Confidence            5554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.97  E-value=2.3e-09  Score=67.86  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=50.1

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+.+|+.+.|.|....      +.|++++....  .. ....++.. .++.|.|.+++.+|+|.|+|.|+|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~--~~-~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNF--IP-EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccc--cc-cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            5678999999999998766      99999632111  11 11223333 3689999999999999999999987644

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.97  E-value=4e-09  Score=66.78  Aligned_cols=65  Identities=17%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             EEecCCCEEEEeE-eCC----CCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         145 TIDFGRPAQFTCK-YEG----NPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       145 ~~~~g~~v~l~C~-~~~----~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+..|.+..|.|. ..+    .+.+.+.||||+.++...        +...|.|.++..+|+|.|+|.+.+..+....
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            5667899999997 233    356799999999987632        2468999999999999999999998655433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.96  E-value=1.4e-08  Score=64.33  Aligned_cols=74  Identities=14%  Similarity=0.335  Sum_probs=61.6

Q ss_pred             eEEEecCCCEEEEeEeCCCCCce-EEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .+.+.+|+++.|.|.+..+|+|. +.|.+++..+....              .+.|.+..++.++.|.|+|.|.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            34789999999999999999986 99999877553211              1578899999999999999999999888


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.|.|+
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888877764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.96  E-value=5.2e-09  Score=67.85  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCccee-------------ccccCCceEEE-EeeEEEEeecccCCCeeEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK-------------VAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~   84 (267)
                      +..+.+|++|.|.|....     +.|+|+.......             ....+..|... .+++|.|.+++..|+|.|+
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence            447889999999998665     9999952111010             00113344443 4679999999999999999


Q ss_pred             EEEEcCCCc-cEEEEEEE
Q psy3045          85 CVVNNSVGG-ESVETVLT  101 (267)
Q Consensus        85 C~~~~~~~~-~~~~~~l~  101 (267)
                      |.+.+.... ....+.|.
T Consensus        87 ~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          87 LQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEeCCccEEEEEEEEE
Confidence            999887633 44444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.95  E-value=6.4e-09  Score=63.44  Aligned_cols=56  Identities=21%  Similarity=0.420  Sum_probs=45.3

Q ss_pred             EEEEeEeCC-CCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +.|.|...+ .|++.|.||++++++....           .+.|.+.....+|.+.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999765 5899999999999886421           1368888888889999999999987653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.95  E-value=3.2e-09  Score=65.02  Aligned_cols=64  Identities=34%  Similarity=0.583  Sum_probs=44.0

Q ss_pred             EEEEEEecc------eeeeecccCcceeccccCC-ceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          33 FALLCEAQE------NMWFKFIEGSSRKVAVPLN-DRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        33 v~l~C~~~~------~~W~~~~~~~~~~~~~~~~-~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      +.|.|.+.+      +.|++++.....  ..... .++.  .....|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNR--KNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccc--cCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            468999877      999996432211  11111 0111  2346899999999999999999999999866554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=9.1e-09  Score=63.78  Aligned_cols=66  Identities=29%  Similarity=0.480  Sum_probs=48.1

Q ss_pred             EEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEE
Q psy3045          25 FKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVET   98 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~   98 (267)
                      ..+.+|+++.|.|.+.+     +.|++++.            .+......+.+.+++.+|+|.|+|.+.+..+. .+..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~------------~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGS------------PINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTE------------EEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeee------------eeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence            56899999999999988     99998521            11111123778899999999999999986653 45555


Q ss_pred             EEEE
Q psy3045          99 VLTV  102 (267)
Q Consensus        99 ~l~V  102 (267)
                      .|.|
T Consensus        77 ~v~V   80 (80)
T PF13895_consen   77 NVTV   80 (80)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            5544

...

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.94  E-value=1.1e-08  Score=66.51  Aligned_cols=73  Identities=23%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             CCeEEEEEEecc--------eeeeecccCcce---------e--ccccCCceEEE-------EeeEEEEeecccCCCeeE
Q psy3045          30 GESFALLCEAQE--------NMWFKFIEGSSR---------K--VAVPLNDRVKQ-------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        30 g~~v~l~C~~~~--------~~W~~~~~~~~~---------~--~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y   83 (267)
                      |++|+|.|.+..        +.|++.......         .  ....+..|+..       ...+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            789999999863        889885321110         0  01112345443       235899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEE
Q psy3045          84 LCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V  102 (267)
                      +|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987766666666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=4.1e-09  Score=64.76  Aligned_cols=58  Identities=28%  Similarity=0.455  Sum_probs=40.5

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~   94 (267)
                      +.|.|.+.|     ++|++++....  ..  ...++.  ..++.|.|.++..    +|+|.|+|.|.|..|..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~--~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFD--PE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC--CC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            579999998     99999633211  11  112222  2457899988754    68999999999999874

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.94  E-value=2.3e-09  Score=63.39  Aligned_cols=58  Identities=28%  Similarity=0.416  Sum_probs=37.2

Q ss_pred             CCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          30 GESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        30 g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      |++++|.|.+ ..     +.|++++.....................|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7999999999 33     9999974433221111100000001114999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.94  E-value=3.5e-09  Score=62.61  Aligned_cols=52  Identities=37%  Similarity=0.823  Sum_probs=42.7

Q ss_pred             CCCEEEEeEe-CCCCCceEEEEECCccCCCC-------CCC----eEEeccCCCCCCeEEEEEE
Q psy3045         149 GRPAQFTCKY-EGNPVKTISWMKDGKPVPDH-------NEP----VFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       149 g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~-------~~~----~l~i~~~~~~d~g~y~C~~  200 (267)
                      |+.+.|.|.+ .+.+...+.|++++......       ...    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 66678899999998876532       112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.93  E-value=1.5e-08  Score=64.48  Aligned_cols=70  Identities=21%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEeEeC-----------CCCCceEEEEECCccCCCC------------CCCeEEeccCCCCCCeEEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYE-----------GNPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~-----------~~p~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      .+.+|+.+.|.|..-           ......+.|+|++..+...            ....|.|.++..+|+|.|+|.+.
T Consensus        11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r   90 (104)
T cd05896          11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR   90 (104)
T ss_pred             EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence            678899999999851           1123489999997544321            24678999999999999999999


Q ss_pred             cCCCCceEEEEEE
Q psy3045         202 NEQESAQASGELK  214 (267)
Q Consensus       202 ~~~~~~~~~~~l~  214 (267)
                      |.......++.|.
T Consensus        91 N~t~C~~~~i~l~  103 (104)
T cd05896          91 NSTYCMKVSMSLT  103 (104)
T ss_pred             CCCcceEEEEEEE
Confidence            9876655555443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.91  E-value=7.9e-09  Score=63.40  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=39.7

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~   94 (267)
                      |.|.|.+.|     ++|++++....  ........+...+++|.|..+..    .|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~--~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFD--IDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC--CcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence            579999999     99999633211  11111112222456788877764    37899999999999874

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.91  E-value=5.6e-09  Score=66.23  Aligned_cols=69  Identities=32%  Similarity=0.409  Sum_probs=46.5

Q ss_pred             EEecCCCeEEEEEEecc-----eeeeecccCc----cee----ccccCCceEE-------EEeeEEEEeecccCCCeeEE
Q psy3045          25 FKKPGGESFALLCEAQE-----NMWFKFIEGS----SRK----VAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~-----~~W~~~~~~~----~~~----~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      +.+.+|++|+|.|.+.+     +.|++++...    ...    .......|+.       ....+|+|.++..+|+|+|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            46789999999999987     9998642110    000    0111222222       22357999999999999999


Q ss_pred             EEEEcCCCc
Q psy3045          85 CVVNNSVGG   93 (267)
Q Consensus        85 C~~~~~~~~   93 (267)
                      |.+.+..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999886543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.91  E-value=1.8e-08  Score=66.18  Aligned_cols=76  Identities=25%  Similarity=0.412  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEec-------c----eeeeecccCccee------------ccccCCceEEEE-----eeEEEEeecccCCC
Q psy3045          29 GGESFALLCEAQ-------E----NMWFKFIEGSSRK------------VAVPLNDRVKQV-----SGTLIIKEAKVEDS   80 (267)
Q Consensus        29 ~g~~v~l~C~~~-------~----~~W~~~~~~~~~~------------~~~~~~~~~~~~-----~~~l~i~~~~~~d~   80 (267)
                      .|++|+|.|.+.       .    +.|++...+....            ....+..|+...     ..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999753       2    9999964332110            001123454432     35899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |.|+|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888788888888764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.91  E-value=7.4e-09  Score=60.77  Aligned_cols=58  Identities=38%  Similarity=0.618  Sum_probs=43.2

Q ss_pred             CCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          29 GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        29 ~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      +|+++.|.|.+.+     +.|++++....      ...+.......|.|.++...|+|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            5899999999765     99999532211      1223334456899999999999999999988654

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.90  E-value=8.4e-09  Score=65.56  Aligned_cols=58  Identities=22%  Similarity=0.508  Sum_probs=47.7

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+.+|++|+|.|... .+...+.|+++|.....      .....+.|.+++.+|+|.|+|.+.+.
T Consensus        12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            678899999999875 55678999999875431      23467999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.90  E-value=9e-09  Score=65.41  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      .|.+...|   ...|.+|++|+|.|....    +.|++++.......     .......+.+.|.+++.+|+|.|+|.+.
T Consensus         2 kP~L~a~p---~~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751           2 KPSLWAEP---SSVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             CCEEEecC---CCccCCCCcEEEEEecCCCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence            36666665   458899999999999877    77888543211110     1112345679999999999999999998


Q ss_pred             cC
Q psy3045          89 NS   90 (267)
Q Consensus        89 ~~   90 (267)
                      +.
T Consensus        74 ~~   75 (91)
T cd05751          74 SG   75 (91)
T ss_pred             CC
Confidence            76

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG3515|consensus

Probab=98.89  E-value=1.3e-08  Score=86.08  Aligned_cols=211  Identities=20%  Similarity=0.284  Sum_probs=119.8

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceecc--cc----CCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA--VP----LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~--~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ......+..+.+.|....       +.|..+.-.......  ..    ...........+.+.....++.|+|+|.+.+.
T Consensus       106 e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  106 EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            446678899999996555       899875221111110  00    11111133456888888899999999999885


Q ss_pred             CCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC-CCCCceEEE
Q psy3045          91 VGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISW  168 (267)
Q Consensus        91 ~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W  168 (267)
                      ... ......+.+.........  ..                      ........+.+|+.+.|.|.+. +.|.+.+.|
T Consensus       186 ~s~~l~~~~~~~i~v~~~~~~~--~~----------------------~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  186 NSPGLSFAKQLTIIVEAPCKGI--GI----------------------TGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             cCccccccceeEeecccccccc--ee----------------------cchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence            322 122222222221110000  00                      0001113677899999999765 458889999


Q ss_pred             EECCccCCCC-----C------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC
Q psy3045         169 MKDGKPVPDH-----N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP  237 (267)
Q Consensus       169 ~~~~~~~~~~-----~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~  237 (267)
                      +++.......     .      ...+.+..-..+..-...|.+.|..   ..+..+.+..  .+-...+.+....+..|.
T Consensus       242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~---~~~~~tav~~--~~~~~~Ist~~~~ls~g~  316 (741)
T KOG3515|consen  242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLL---AASQITAVQV--KPTAVPISTSDSGLSSGR  316 (741)
T ss_pred             ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCcc---ccceeeeccc--ccccccccCccccccccc
Confidence            9987765432     1      1233333333334457789998821   2222233321  222333344445577899


Q ss_pred             cEEEEEEee-cCCCCcEEEEECCEEcC
Q psy3045         238 NYYFKCIAS-GNPTPEISWYLDGKKLV  263 (267)
Q Consensus       238 ~~~l~C~~~-~~p~~~i~W~~~~~~l~  263 (267)
                      ...+.|... ++|.+.+.|+++.+...
T Consensus       317 s~r~~c~~sss~p~~~i~w~~~~~~~~  343 (741)
T KOG3515|consen  317 SARSSCVSSSSKPPAHIAWYKDTKMPK  343 (741)
T ss_pred             ccccceeccCCCCccceeeeccCcccc
Confidence            999998665 57778999999776654

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.89  E-value=3.3e-08  Score=64.91  Aligned_cols=76  Identities=26%  Similarity=0.330  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEec---------------c--eeeeecccCccee----------ccccCCceEEE-------EeeEEEEee
Q psy3045          29 GGESFALLCEAQ---------------E--NMWFKFIEGSSRK----------VAVPLNDRVKQ-------VSGTLIIKE   74 (267)
Q Consensus        29 ~g~~v~l~C~~~---------------~--~~W~~~~~~~~~~----------~~~~~~~~~~~-------~~~~l~i~~   74 (267)
                      .|++|+|.|.+.               .  +.|+|...+....          ....+.+|+..       .+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999875               2  8899853321110          01123346554       356899999


Q ss_pred             cccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          75 AKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      ++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998777777777777754

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.88  E-value=1.1e-08  Score=62.71  Aligned_cols=58  Identities=29%  Similarity=0.461  Sum_probs=39.9

Q ss_pred             EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~   94 (267)
                      +.|.|.+.|     ++|++++....    .....++.  ..+++|.|..+..    .|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~----~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFN----VAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEcc----CcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            479999999     99999643111    11122222  3456899987642    46999999999999974

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.88  E-value=1.5e-08  Score=64.77  Aligned_cols=71  Identities=27%  Similarity=0.359  Sum_probs=49.1

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceec------------cccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKV------------AVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~------------~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      |++|+|.|.+..     +.|++.........            ...+..|+.. .+++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            789999999876     99999643321111            1123445444 44789999999999999999998876


Q ss_pred             Cc-cEEEEEE
Q psy3045          92 GG-ESVETVL  100 (267)
Q Consensus        92 ~~-~~~~~~l  100 (267)
                      +. ....+.|
T Consensus        81 ~~~~~~~~~l   90 (92)
T cd05741          81 GVTENAKFFL   90 (92)
T ss_pred             CcEEEEEEEE
Confidence            54 3444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.88  E-value=3.9e-08  Score=63.13  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=47.6

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCc---------cCC---------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGK---------PVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~---------~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ...+.+|+++.|.|.+.+.+.+.+.|++.+.         .+.         ......|.|.+++.+|+|.|.|.+....
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            4478899999999999888888999974211         111         0123578999999999999999998764

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.87  E-value=2.6e-08  Score=65.37  Aligned_cols=76  Identities=28%  Similarity=0.384  Sum_probs=53.1

Q ss_pred             CCCeEEEEEEec-------c----eeeeecc--cCcce----------eccccCCceEEE-----EeeEEEEeecccCCC
Q psy3045          29 GGESFALLCEAQ-------E----NMWFKFI--EGSSR----------KVAVPLNDRVKQ-----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        29 ~g~~v~l~C~~~-------~----~~W~~~~--~~~~~----------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~   80 (267)
                      .|++|+|.|.+.       .    +.|++..  .....          ........|+..     .+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999964       1    9999962  11110          000112223332     346899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |.|+|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877778888888865

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.86  E-value=1.8e-08  Score=62.75  Aligned_cols=64  Identities=22%  Similarity=0.487  Sum_probs=46.1

Q ss_pred             EEEEeEeCC-CCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.|.+.| .|.+.++|++++.++....              .+.|.+.....++.|.|+|.|.|..........+.+
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 4888999999998764321              134666666677888999999998755444444433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.86  E-value=2.4e-08  Score=63.09  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             ceEEEecCCCEEEEeE-eCCCCCceEEEEECCccCCC-------CCCCeEEeccCCCCCCe-EEEEEEEcCCCC
Q psy3045         142 TVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQES  206 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~-~~~~p~~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~  206 (267)
                      ....+.+|+.+.|.|. ..|.|.|.+.|+.++...-.       +..+.|.|.++..+|+| .|.|.|.+....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            3458899999999997 68999999999976644211       23588999999999999 899999998643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00410 IG_like Immunoglobulin like

Probab=98.86  E-value=4.2e-08  Score=61.38  Aligned_cols=75  Identities=36%  Similarity=0.532  Sum_probs=54.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+..|+++.|.|.+.+     +.|+++ ++..    .....++...    ...|.|.++...|+|.|+|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~----v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKL----LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEE----cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            4567889999999999988     899985 1111    1122222221    257999999999999999999987776


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            655555554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.86  E-value=4.2e-08  Score=61.38  Aligned_cols=75  Identities=36%  Similarity=0.532  Sum_probs=54.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+..|+++.|.|.+.+     +.|+++ ++..    .....++...    ...|.|.++...|+|.|+|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~----v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKL----LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEE----cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            4567889999999999988     899985 1111    1122222221    257999999999999999999987776


Q ss_pred             cEEEEEEEE
Q psy3045          94 ESVETVLTV  102 (267)
Q Consensus        94 ~~~~~~l~V  102 (267)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            655555554

>smart00409 IG Immunoglobulin

Probab=98.86  E-value=6.1e-08  Score=60.61  Aligned_cols=70  Identities=29%  Similarity=0.624  Sum_probs=55.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEEC-CccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|+++.|.|.+.+.+.+.+.|+++ +..+...         ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00409        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            677899999999998888889999998 6655311         136799999999999999999998776655554444

>smart00410 IG_like Immunoglobulin like

Probab=98.86  E-value=6.1e-08  Score=60.61  Aligned_cols=70  Identities=29%  Similarity=0.624  Sum_probs=55.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEEC-CccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+..|+++.|.|.+.+.+.+.+.|+++ +..+...         ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00410        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            677899999999998888889999998 6655311         136799999999999999999998776655554444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.85  E-value=4.2e-08  Score=65.18  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecc-cCccee------------ccccCCceEEE------EeeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFI-EGSSRK------------VAVPLNDRVKQ------VSGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~-~~~~~~------------~~~~~~~~~~~------~~~~l~i~~   74 (267)
                      ..+.+.+|++++|.|.+..         +.|++.. .+....            ....+..|+..      .+.+|+|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            6889999999999999752         8997531 111100            11122334322      245799999


Q ss_pred             cccCCCeeEEEEEEcCCC
Q psy3045          75 AKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~   92 (267)
                      ++.+|+|.|+|.+.+...
T Consensus        86 v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             CChhhCEEEEEEEEeCCC
Confidence            999999999999997654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.85  E-value=5.1e-08  Score=61.99  Aligned_cols=72  Identities=25%  Similarity=0.410  Sum_probs=51.6

Q ss_pred             CeEEEEEEecc------eeeeecccCcceecc-----------ccCCceEEEE-----eeEEEEeecccCCCeeEEEEEE
Q psy3045          31 ESFALLCEAQE------NMWFKFIEGSSRKVA-----------VPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        31 ~~v~l~C~~~~------~~W~~~~~~~~~~~~-----------~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ++|+|.|....      +.|.|..++......           ..+..|+...     +.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            46899999885      999885332111110           1233455543     5699999999999999999985


Q ss_pred             -cCCCccEEEEEEEE
Q psy3045          89 -NSVGGESVETVLTV  102 (267)
Q Consensus        89 -~~~~~~~~~~~l~V  102 (267)
                       .+.|.....+.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             67787888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.85  E-value=4.5e-08  Score=62.78  Aligned_cols=71  Identities=30%  Similarity=0.547  Sum_probs=50.7

Q ss_pred             eEEEEEEecc---------eeeeecccCcceec-----------cccCCceEEEE-----eeEEEEeecccCCCeeEEEE
Q psy3045          32 SFALLCEAQE---------NMWFKFIEGSSRKV-----------AVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        32 ~v~l~C~~~~---------~~W~~~~~~~~~~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|+|.|.+..         +.|.+..++.....           ...+.+|+...     +.+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            6889999873         89988533222111           11234555543     37899999999999999999


Q ss_pred             EEc-CCCccEEEEEEEE
Q psy3045          87 VNN-SVGGESVETVLTV  102 (267)
Q Consensus        87 ~~~-~~~~~~~~~~l~V  102 (267)
                      +.+ +.|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 6777777788776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.84  E-value=4.3e-08  Score=63.15  Aligned_cols=73  Identities=27%  Similarity=0.387  Sum_probs=50.3

Q ss_pred             CCeEEEEEEecc------eeeeecccCccee-----------ccccCCceEEE-----EeeEEEEeecccCCCeeEEEEE
Q psy3045          30 GESFALLCEAQE------NMWFKFIEGSSRK-----------VAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        30 g~~v~l~C~~~~------~~W~~~~~~~~~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      |++|+|.|....      +.|++...+....           ....+..|...     .+.+|.|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998665      9999853221110           01112233322     3468999999999999999998


Q ss_pred             E-cCCCccEEEEEEEE
Q psy3045          88 N-NSVGGESVETVLTV  102 (267)
Q Consensus        88 ~-~~~~~~~~~~~l~V  102 (267)
                      . .+.|..+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 56677777888876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.84  E-value=5.3e-08  Score=64.10  Aligned_cols=75  Identities=27%  Similarity=0.329  Sum_probs=54.2

Q ss_pred             CCeEEEEEEec--------------c-eeeeecccCccee----------ccccCCceEEE-------EeeEEEEeeccc
Q psy3045          30 GESFALLCEAQ--------------E-NMWFKFIEGSSRK----------VAVPLNDRVKQ-------VSGTLIIKEAKV   77 (267)
Q Consensus        30 g~~v~l~C~~~--------------~-~~W~~~~~~~~~~----------~~~~~~~~~~~-------~~~~l~i~~~~~   77 (267)
                      |++|+|.|.+.              . +.|++...+....          ....+.+|+..       ...+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            89999999873              1 8999963221111          11233456543       346899999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|+|.|.|.+.......+..+.|.|.+
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998776778888888875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.83  E-value=4.5e-08  Score=60.59  Aligned_cols=59  Identities=20%  Similarity=0.449  Sum_probs=48.7

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      +..+..|+++.|.|...+. .+.+.|++++..+..+     ....|.|..+..+|+|.|.|.+.-
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence            3478899999999998765 5699999999988643     235577899999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.82  E-value=5e-08  Score=64.54  Aligned_cols=71  Identities=20%  Similarity=0.350  Sum_probs=50.0

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeeccc-------------Cccee-ccccCCceEEE------EeeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIE-------------GSSRK-VAVPLNDRVKQ------VSGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~-------------~~~~~-~~~~~~~~~~~------~~~~l~i~   73 (267)
                      ..+.+..|+++.|.|.+..         +.|.+...             +.... ....+.+|+..      .+.+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            5778999999999999866         89944211             11110 11223346543      34689999


Q ss_pred             ecccCCCeeEEEEEEcCCCc
Q psy3045          74 EAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      +++.+|+|+|+|.+.|....
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCc
Confidence            99999999999999987654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.80  E-value=5.5e-08  Score=64.22  Aligned_cols=69  Identities=23%  Similarity=0.432  Sum_probs=49.7

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|.+..     +.|++...+.....        ......|+..      ....|.|.+++.+|+|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            6788999999999999986     99998633211110        0012344432      346899999999999999


Q ss_pred             EEEEEcCC
Q psy3045          84 LCVVNNSV   91 (267)
Q Consensus        84 ~C~~~~~~   91 (267)
                      .|.+.+..
T Consensus        86 ~C~~~~~~   93 (109)
T cd04983          86 FCALSESG   93 (109)
T ss_pred             EEEEecCC
Confidence            99998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.79  E-value=4.2e-08  Score=62.64  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      |.+...+   ...|.+|++|+|.|....    +.|+|++........  ...........+.|..++.+|+|.|+|....
T Consensus         2 P~l~a~p---~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP---SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHL--YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC---CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceec--ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            4455443   668889999999997665    999997543321110  0111122345789999999999999999863

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.79  E-value=1.1e-07  Score=61.53  Aligned_cols=72  Identities=31%  Similarity=0.525  Sum_probs=49.4

Q ss_pred             CeEEEEEEecc--------eeeeecccCccee-----------ccccCCceEEE-----EeeEEEEeecccCCCeeEEEE
Q psy3045          31 ESFALLCEAQE--------NMWFKFIEGSSRK-----------VAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        31 ~~v~l~C~~~~--------~~W~~~~~~~~~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ++|+|.|.+..        +.|+|...+....           ....+..|+..     .+.+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            57899998765        9999974431110           00112334433     246899999999999999999


Q ss_pred             EEc-CCCccEEEEEEEE
Q psy3045          87 VNN-SVGGESVETVLTV  102 (267)
Q Consensus        87 ~~~-~~~~~~~~~~l~V  102 (267)
                      +.. +.|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            974 6666777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.79  E-value=4.8e-08  Score=61.75  Aligned_cols=74  Identities=20%  Similarity=0.352  Sum_probs=54.6

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCe-eEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSG-KYLC   85 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C   85 (267)
                      |.|.... ...+.+.+|+.+.|.|.. .+     +.|+++...     .+....|+.. .++.|.|.+++.+|.| .|.|
T Consensus         3 ~~~~~~~-~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~-----~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C   76 (95)
T cd05845           3 PKWPKEK-IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLL-----HITQDERVSMGQNGNLYFANVEEQDSHPDYIC   76 (95)
T ss_pred             CcCCccc-cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCc-----cccccccEEECCCceEEEEEEehhhCCCCeEE
Confidence            5555543 268999999999999974 44     999974221     1223455554 4689999999999999 8999


Q ss_pred             EEEcCCCc
Q psy3045          86 VVNNSVGG   93 (267)
Q Consensus        86 ~~~~~~~~   93 (267)
                      .|.+....
T Consensus        77 ~a~~~~~~   84 (95)
T cd05845          77 HAHFPGLR   84 (95)
T ss_pred             EEEccccc
Confidence            99987643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.78  E-value=1e-07  Score=60.44  Aligned_cols=68  Identities=13%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      +++++.+|+++.|.|.+.+     +.|++.+.....  ......+.|+..     ...+|.|.+++.+|+|.|+|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5789999999999999999     889874311100  001113445442     2347999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.78  E-value=1.2e-07  Score=66.41  Aligned_cols=85  Identities=18%  Similarity=0.301  Sum_probs=61.7

Q ss_pred             eeEEecCCCeEEEEEEec-c-----eeeeecccCcce------eccccCCceEEE-----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSR------KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ....|.+|++|.|.|... +     ++|+|..+....      .....+.+|+..     .+.+|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            567899999999999985 3     999996321110      011112335543     45689999999999999999


Q ss_pred             EEE-cCCC-ccEEEEEEEEEeccc
Q psy3045          86 VVN-NSVG-GESVETVLTVTAPLA  107 (267)
Q Consensus        86 ~~~-~~~~-~~~~~~~l~V~~~~~  107 (267)
                      .+. .+.| ..+..+.|+|.....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~~  126 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDSY  126 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchhh
Confidence            996 5677 678888999986443

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.75  E-value=1.3e-07  Score=63.02  Aligned_cols=70  Identities=26%  Similarity=0.408  Sum_probs=48.4

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcc--ee------------ccccCCceEEEE------eeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSS--RK------------VAVPLNDRVKQV------SGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~--~~------------~~~~~~~~~~~~------~~~l~i~   73 (267)
                      ..+.+.+|++|+|.|.+..         +.|++...+..  ..            ....+..|+...      +.+|+|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            6788999999999998753         88987432211  00            011222333322      3689999


Q ss_pred             ecccCCCeeEEEEEEcCCC
Q psy3045          74 EAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~   92 (267)
                      +++.+|+|.|+|.+.+...
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eCCcccCEEEEEEEEeCCC
Confidence            9999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.75  E-value=1.1e-07  Score=58.07  Aligned_cols=62  Identities=15%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             eEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          32 SFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        32 ~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      .++|.|...+      ++||+++.............+.....++|.+......|.+.|+|+|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            3789999988      9999975433221111223344446678999999999999999999998765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.72  E-value=4.4e-08  Score=59.78  Aligned_cols=69  Identities=23%  Similarity=0.418  Sum_probs=45.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|...+  .......+. ++|.|.+.+      +.|+..     ..............++.|.|.++..+|.|.|+|.
T Consensus         1 kP~I~~~~--~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~   72 (75)
T PF13927_consen    1 KPQISVPP--PPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-----NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCI   72 (75)
T ss_dssp             ESEEEEES--TSEEETTEE-EEEEEEESSEESSEEEEEETE-----EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred             CCEEEEcC--CCcEeecee-EEEEEEEccccCCeEEEEEec-----CCceeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence            35666555  333333333 999999998      899811     0011111222334567899999999999999999


Q ss_pred             EEc
Q psy3045          87 VNN   89 (267)
Q Consensus        87 ~~~   89 (267)
                      |.|
T Consensus        73 a~N   75 (75)
T PF13927_consen   73 ASN   75 (75)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            976

...

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.71  E-value=1.2e-07  Score=61.00  Aligned_cols=75  Identities=23%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             cCCCeEEEEEEecc------eeeeecccCcc-----------eeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEE
Q psy3045          28 PGGESFALLCEAQE------NMWFKFIEGSS-----------RKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        28 ~~g~~v~l~C~~~~------~~W~~~~~~~~-----------~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ..|++|+|.|....      +.|++......           ......+..|+..  .+.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998753      99998521110           0011122334443  34689999999999999999999


Q ss_pred             cCCCc-cEEEEEEEE
Q psy3045          89 NSVGG-ESVETVLTV  102 (267)
Q Consensus        89 ~~~~~-~~~~~~l~V  102 (267)
                      ...+. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            87755 355555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.70  E-value=2.3e-07  Score=60.67  Aligned_cols=75  Identities=28%  Similarity=0.429  Sum_probs=53.0

Q ss_pred             CCeEEEEEEec------c------eeeeecccC--c-ce----------eccccCCceEEE-------EeeEEEEeeccc
Q psy3045          30 GESFALLCEAQ------E------NMWFKFIEG--S-SR----------KVAVPLNDRVKQ-------VSGTLIIKEAKV   77 (267)
Q Consensus        30 g~~v~l~C~~~------~------~~W~~~~~~--~-~~----------~~~~~~~~~~~~-------~~~~l~i~~~~~   77 (267)
                      |++|+|.|.+.      .      +.|.+...+  . ..          .....+..|+..       .+.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999944      1      899885211  1 10          111234455554       346899999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|+|.|+|.+.......+..+.|.|.+
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999998776678888888764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.69  E-value=2.4e-07  Score=59.92  Aligned_cols=71  Identities=32%  Similarity=0.518  Sum_probs=47.7

Q ss_pred             eEEEEEEecc--------eeeeecccCcce-ecc-----------ccCCceEEEE------eeEEEEeecccCCCeeEEE
Q psy3045          32 SFALLCEAQE--------NMWFKFIEGSSR-KVA-----------VPLNDRVKQV------SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        32 ~v~l~C~~~~--------~~W~~~~~~~~~-~~~-----------~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +|+|.|....        +.|++...+... ...           ..+.+|....      +.+|.|.+++.+|+|.|+|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            6899998764        899985333110 000           0122444432      4589999999999999999


Q ss_pred             EEEc-CCCccEEEEEEEE
Q psy3045          86 VVNN-SVGGESVETVLTV  102 (267)
Q Consensus        86 ~~~~-~~~~~~~~~~l~V  102 (267)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9986 6666666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.68  E-value=6e-08  Score=63.62  Aligned_cols=68  Identities=24%  Similarity=0.409  Sum_probs=46.9

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+.+.+|++|+|.|.+.+      +.|++...+.......        ....++..    ....|.|.+++.+|+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~   87 (106)
T cd04980           8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY   87 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence            6789999999999999753      9999864332211100        01123332    2347999999999999999


Q ss_pred             EEEEcC
Q psy3045          85 CVVNNS   90 (267)
Q Consensus        85 C~~~~~   90 (267)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T cd04980          88 CQQYGT   93 (106)
T ss_pred             EEEeCC
Confidence            998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.66  E-value=5.4e-07  Score=57.20  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceE---EEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRV---KQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..+.|.+|+++.|.|.+.+      +.|.+++.............+.   ..-.+.|++.++..+|.|.|+|.+.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            4678999999999999999      7999864422111111111110   012357999999999999999999999888


Q ss_pred             cEEEEEEEEE
Q psy3045          94 ESVETVLTVT  103 (267)
Q Consensus        94 ~~~~~~l~V~  103 (267)
                      .+..+.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8777777663

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.66  E-value=4.4e-07  Score=57.76  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=46.5

Q ss_pred             CeEEEEEEecc------eeeeecccCcceec-----------cccCCceEEEE-----eeEEEEeecccCCCeeEEEEEE
Q psy3045          31 ESFALLCEAQE------NMWFKFIEGSSRKV-----------AVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        31 ~~v~l~C~~~~------~~W~~~~~~~~~~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ++++|.|....      +.|.|..++.....           ...+.+|+...     +.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999876      88998533211111           11234565543     4689999999999999999996


Q ss_pred             -cCCCccEEEEE
Q psy3045          89 -NSVGGESVETV   99 (267)
Q Consensus        89 -~~~~~~~~~~~   99 (267)
                       .+.|.....+.
T Consensus        81 t~P~g~~~~~i~   92 (96)
T cd05889          81 TYPQGSWEKVIE   92 (96)
T ss_pred             eCCCCCeEEEEE
Confidence             45665555444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.65  E-value=5.4e-07  Score=59.14  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=53.9

Q ss_pred             CCeEEEEEEec-----------c-----eeeeecc---cCc---ce----------eccccCCceEEE-------EeeEE
Q psy3045          30 GESFALLCEAQ-----------E-----NMWFKFI---EGS---SR----------KVAVPLNDRVKQ-------VSGTL   70 (267)
Q Consensus        30 g~~v~l~C~~~-----------~-----~~W~~~~---~~~---~~----------~~~~~~~~~~~~-------~~~~l   70 (267)
                      |++++|.|.+.           .     +.|++-.   ++.   ..          .....+..|...       .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999987           1     8998841   111   01          111234445554       35689


Q ss_pred             EEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          71 IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        71 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      .|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999887788888888864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.65  E-value=1.5e-07  Score=61.69  Aligned_cols=67  Identities=31%  Similarity=0.452  Sum_probs=47.5

Q ss_pred             EecCCCeEEEEEEecc------eeeeecccCcceec-----------cccCCceEEE------EeeEEEEeecccCCCee
Q psy3045          26 KKPGGESFALLCEAQE------NMWFKFIEGSSRKV-----------AVPLNDRVKQ------VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-----------~~~~~~~~~~------~~~~l~i~~~~~~d~G~   82 (267)
                      .+.+|++++|.|.+..      +.|++...+.....           ......|+..      ...+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            6789999999998875      99999643211110           1122344432      23589999999999999


Q ss_pred             EEEEEEcCCC
Q psy3045          83 YLCVVNNSVG   92 (267)
Q Consensus        83 Y~C~~~~~~~   92 (267)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.65  E-value=1.3e-07  Score=62.46  Aligned_cols=68  Identities=28%  Similarity=0.437  Sum_probs=48.7

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecc------------ccCCceEEE-----EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA------------VPLNDRVKQ-----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~------------~~~~~~~~~-----~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|.+.+    +.|+|...+......            .....|+..     ...+|.|.+++.+|+|
T Consensus         6 ~~~~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             CceEEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            6789999999999999876    999997543211110            001233322     2357999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+.+.
T Consensus        86 ~Y~Ca~~~~   94 (110)
T cd05899          86 VYLCASSLG   94 (110)
T ss_pred             EEEEEeeCC
Confidence            999999764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.64  E-value=3.3e-07  Score=59.44  Aligned_cols=61  Identities=15%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------------------------CCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------------------------~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .+.+|+++.|.|.........+.|+|+......                         ..+++|.|++++.+|+|.|+|.
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~   88 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ   88 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence            677899999999754444559999996322100                         1246899999999999999999


Q ss_pred             EEcCCC
Q psy3045         200 IRNEQE  205 (267)
Q Consensus       200 ~~~~~~  205 (267)
                      +.+...
T Consensus        89 v~~~~~   94 (105)
T cd05774          89 TITTNF   94 (105)
T ss_pred             EEeCCc
Confidence            998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.63  E-value=2.5e-07  Score=61.79  Aligned_cols=67  Identities=24%  Similarity=0.400  Sum_probs=48.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecc--------ccCCceEEEE------eeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVA--------VPLNDRVKQV------SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~--------~~~~~~~~~~------~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|.+..      +.|++...+......        .....|+...      ..+|.|.++..+|+|.
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~   86 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK   86 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            6788999999999999754      999996433221110        1223455432      3579999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |.|.+..
T Consensus        87 Y~C~~~~   93 (116)
T cd07706          87 YFCALST   93 (116)
T ss_pred             EEEEEEC
Confidence            9999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.62  E-value=3.7e-05  Score=60.69  Aligned_cols=155  Identities=16%  Similarity=0.254  Sum_probs=93.2

Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE--eccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      .|.|..++...+|.|+=...+..+.......++|.  ..+...+.+.                               .+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-------------------------------Pv  231 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-------------------------------AV  231 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-------------------------------cc
Confidence            49999999999999999987766654444444444  4444333332                               56


Q ss_pred             ecCCCEEEEeEeCCC-C--CceEEEEECCccCCCC-----------C----CCeEEeccCCCC-CCeEEEEEEEcCCCCc
Q psy3045         147 DFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDH-----------N----EPVFRIDSVRKE-DKGMYQCVIRNEQESA  207 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~-----------~----~~~l~i~~~~~~-d~g~y~C~~~~~~~~~  207 (267)
                      ..|+...-.|.+..+ |  ...+.||+|+.++...           +    .+++++...... ..-..+|.+...-...
T Consensus       232 L~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~v  311 (466)
T PHA03270        232 LEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSV  311 (466)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCc
Confidence            679999999998775 4  3389999999887421           1    123333332221 2237899998654433


Q ss_pred             -eEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEEc
Q psy3045         208 -QASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKL  262 (267)
Q Consensus       208 -~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~l  262 (267)
                       .+++.-.+. ..+.+|.+.+     .+..|..   .|++...|. ..+.|+-++...
T Consensus       312 S~sR~nAa~~P~VY~~P~Isv-----~F~dG~A---VCtA~CVPegV~l~W~V~D~~~  361 (466)
T PHA03270        312 SFSRRNATGAPTVLPRPTIEM-----EFGGDEA---VCTAACVPEGVTLAWLLGADPA  361 (466)
T ss_pred             cceeecccccCccccCCeEEE-----EEeCCEE---EEeccccCCCCEEEEEecCCCC
Confidence             222222211 1123444443     3333433   388887776 389999776444

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.61  E-value=5.7e-07  Score=59.72  Aligned_cols=80  Identities=28%  Similarity=0.375  Sum_probs=53.5

Q ss_pred             eeEEecCCCeEEEEEEec-c-----eeeeecccCcceecc-------------ccCCceEEE-E-----eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVA-------------VPLNDRVKQ-V-----SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~-------------~~~~~~~~~-~-----~~~l~i~~~~~   77 (267)
                      ..+.+.+|+++.|.|... .     +.|++...+......             .....+... .     ..+|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            678999999999999999 4     999996432211111             112223322 1     24799999999


Q ss_pred             CCCeeEEEEEEcCCCc-cEEEEEEEE
Q psy3045          78 EDSGKYLCVVNNSVGG-ESVETVLTV  102 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~-~~~~~~l~V  102 (267)
                      +|+|.|.|.+...... ....+.|.|
T Consensus        89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   89 SDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999876222 344444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.60  E-value=5e-07  Score=59.59  Aligned_cols=64  Identities=14%  Similarity=0.400  Sum_probs=49.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCcc--C-------------C----------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP--V-------------P----------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~--~-------------~----------~~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|++++|.|...+.+...+.|++....  .             .          ......|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            3445888999999999988777779999985321  0             0          0124579999999999999


Q ss_pred             EEEEEEcCC
Q psy3045         196 YQCVIRNEQ  204 (267)
Q Consensus       196 y~C~~~~~~  204 (267)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.60  E-value=3.3e-07  Score=58.13  Aligned_cols=66  Identities=23%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             eEEecCCCeEEEEEEe------cc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          24 RFKKPGGESFALLCEA------QE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~------~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ...+.+|.+..|.|.-      ..    ++|+|++....     ....++..  ....|.|.++..+|+|.|+|.+.+..
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD-----KDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc-----CCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEee
Confidence            4567889999999962      11    99999742110     01122222  23579999999999999999999987


Q ss_pred             Ccc
Q psy3045          92 GGE   94 (267)
Q Consensus        92 ~~~   94 (267)
                      ++.
T Consensus        79 ~g~   81 (95)
T cd05897          79 EGK   81 (95)
T ss_pred             CCE
Confidence            664

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.60  E-value=8e-07  Score=58.85  Aligned_cols=70  Identities=16%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             eEEEecCCCEEEEeEeCCC----CCceEEEEE---------------CCccCC----------------CCCCCeEEecc
Q psy3045         143 VQTIDFGRPAQFTCKYEGN----PVKTISWMK---------------DGKPVP----------------DHNEPVFRIDS  187 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~----p~~~~~W~~---------------~~~~~~----------------~~~~~~l~i~~  187 (267)
                      ...+..|+.+.|.|.....    +...+.|.+               +|....                .....+|.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            3366678888888886542    245788832               332221                01346799999


Q ss_pred             CCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         188 VRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       188 ~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      ++.+|.|+|+|.+.|..........
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~~~~~~  111 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIVGKSSQ  111 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcCCceeE
Confidence            9999999999999987654333333

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.59  E-value=8.4e-07  Score=58.18  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=31.5

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ...+|.|.+++.+|+|.|.|.+.+..+.......|.|.
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            35789999999999999999999876666666666665

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.58  E-value=6.3e-07  Score=54.91  Aligned_cols=55  Identities=16%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             EEEEeEeCCC-CCceEEEEECCccCCCCC------------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         152 AQFTCKYEGN-PVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~~------------~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +.|.|.+.|. |.+.|.||+++.++....            .+.|.+.....+|...|+|.|.|+.-.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~   69 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK   69 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC
Confidence            6799998865 888999999998775421            135666555555556999999997643

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.57  E-value=1.2e-06  Score=55.57  Aligned_cols=62  Identities=21%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccC---------C---------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------P---------DHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~---------~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+..+.+|+++.|.|.+.+.....+.|++-+..+         .         .+...+|.|..++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            3457889999999999988766667787654322         1         123356999999999999999999763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.56  E-value=2.7e-08  Score=60.77  Aligned_cols=51  Identities=29%  Similarity=0.667  Sum_probs=40.3

Q ss_pred             EEEEeEeCCCC-CceEEEE------ECCccCCCCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         152 AQFTCKYEGNP-VKTISWM------KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       152 v~l~C~~~~~p-~~~~~W~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      +.|.|.+.+.+ .+.+.|+      .............|.+..+..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999999887 8899999      111111223457899999999999999999986

...

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.56  E-value=1.9e-07  Score=60.33  Aligned_cols=64  Identities=25%  Similarity=0.507  Sum_probs=44.2

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEEE
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+.+|++|+|.|.+..       +.|++...+.....-.        ....|+..    ....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            5789999999998743       9999864432211100        11223332    235799999999999999999


Q ss_pred             EEc
Q psy3045          87 VNN   89 (267)
Q Consensus        87 ~~~   89 (267)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.55  E-value=1.1e-06  Score=57.68  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      ..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            35799999999999999999999887777777777653

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.55  E-value=6.8e-07  Score=59.04  Aligned_cols=62  Identities=16%  Similarity=0.348  Sum_probs=47.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC--------------------------CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP--------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~--------------------------~~~~~~l~i~~~~~~d  192 (267)
                      +....+.+|++++|.|...+ +...+.|||...  .+.                          ......|.|.+++.+|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            44558899999999999887 667899998532  110                          0124679999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+.+.
T Consensus        84 sg~Y~Ca~~~~   94 (110)
T cd05899          84 SAVYLCASSLG   94 (110)
T ss_pred             CEEEEEEeeCC
Confidence            99999999764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.54  E-value=8.1e-07  Score=56.60  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=44.1

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCC------------------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~------------------------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      |++|+|.|.........+.|+++......                        ..+.+|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            67889999877666668999886533210                        124789999999999999999998876


Q ss_pred             CC
Q psy3045         205 ES  206 (267)
Q Consensus       205 ~~  206 (267)
                      +.
T Consensus        81 ~~   82 (92)
T cd05741          81 GV   82 (92)
T ss_pred             Cc
Confidence            43

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.54  E-value=1.3e-06  Score=57.41  Aligned_cols=38  Identities=21%  Similarity=0.485  Sum_probs=31.0

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ...+|.|.+++.+|+|+|.|.+.+..........|.|.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            46889999999999999999999876666666666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.54  E-value=1e-06  Score=57.13  Aligned_cols=36  Identities=33%  Similarity=0.624  Sum_probs=29.1

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ..+|.|.+++.+|+|.|+|.+.+..+..+..+.|.|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            357999999999999999999987766555555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.51  E-value=1.8e-06  Score=56.79  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=31.3

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..+|.|.+++.+|+|.|.|.+.......+....|.|.
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            4679999999999999999999876666777777765

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.50  E-value=7.8e-07  Score=59.39  Aligned_cols=67  Identities=18%  Similarity=0.388  Sum_probs=47.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEE------EeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQ------VSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~------~~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......             .....|+..      ....|.|.+++
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   85 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE   85 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence            6788999999999998654       999996433221100             012234432      23579999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|+|.|.|.+..
T Consensus        86 ~~Dsg~Y~C~~~~   98 (116)
T cd04982          86 KEDSATYYCAYWE   98 (116)
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999964

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.50  E-value=1.2e-06  Score=56.56  Aligned_cols=67  Identities=21%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             EEecCCCeEEEEEEecc------eeeeecccCcceec-------cccCCceEEEE------eeEEEEeecccCCCeeEEE
Q psy3045          25 FKKPGGESFALLCEAQE------NMWFKFIEGSSRKV-------AVPLNDRVKQV------SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-------~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +.+.+|++|+|.|....      +.|++...+.....       ......|+...      ..+|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46889999999998764      89999643321111       11223444332      3579999999999999999


Q ss_pred             EEEcCC
Q psy3045          86 VVNNSV   91 (267)
Q Consensus        86 ~~~~~~   91 (267)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.46  E-value=1.9e-06  Score=57.75  Aligned_cols=68  Identities=24%  Similarity=0.337  Sum_probs=47.9

Q ss_pred             eeEEecCCCeEEEEEEec---------c--eeeeecccCc---cee--------ccccCCceEEE------EeeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQ---------E--NMWFKFIEGS---SRK--------VAVPLNDRVKQ------VSGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~---------~--~~W~~~~~~~---~~~--------~~~~~~~~~~~------~~~~l~i~~   74 (267)
                      ..+.+.+|++|+|.|.+.         .  +.|++...+.   ...        .......|+..      .+.+|.|.+
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~   86 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD   86 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence            678999999999999765         1  8999974432   100        00122344433      235899999


Q ss_pred             cccCCCeeEEEEEEcC
Q psy3045          75 AKVEDSGKYLCVVNNS   90 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~   90 (267)
                      ++.+|+|.|.|.+...
T Consensus        87 l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          87 AQPEDSGKYFFRVELG  102 (119)
T ss_pred             CChhhCeEEEEEEEcC
Confidence            9999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.43  E-value=2.3e-05  Score=62.38  Aligned_cols=152  Identities=19%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE--eccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      .|.|..++..++|.|+=.+.+..+.......+.|.  .++...+.+.                               .+
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-------------------------------Pv  247 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-------------------------------PS  247 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-------------------------------cc
Confidence            49999999999999986665655554444555553  4444333332                               56


Q ss_pred             ecCCCEEEEeEeCCC-C--CceEEEEECCccCCC-CC---------------CCeEEeccCC-CCCCeEEEEEEEcCCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPD-HN---------------EPVFRIDSVR-KEDKGMYQCVIRNEQES  206 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~-~~---------------~~~l~i~~~~-~~d~g~y~C~~~~~~~~  206 (267)
                      .+|+...-.|.+..+ |  ...+.|++|+.++.. ..               .++|++.... ....-..+|.+...-..
T Consensus       248 L~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~  327 (486)
T PHA03273        248 LKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE  327 (486)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence            779999999998775 4  348999999998862 10               1234343322 23345789999875443


Q ss_pred             ceE-EEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECC
Q psy3045         207 AQA-SGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDG  259 (267)
Q Consensus       207 ~~~-~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~  259 (267)
                      ... .+.-.+. ..+.+|.+.+     .+..|+.+   |.+...|.  ..+.|+-++
T Consensus       328 vS~~RfsAt~~P~Vy~~P~Is~-----~F~~G~AV---CtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        328 VSFARIAKAGTPSVFVAPTVSV-----TVEDGDAV---CTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             cceeeccccccCccccCCeEEE-----EEeCCEEE---EecccccCCCeeEEEEccC
Confidence            322 2111111 1123444443     33344443   99998877  589999766

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.41  E-value=3.6e-06  Score=52.29  Aligned_cols=63  Identities=17%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             eEEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          32 SFALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        32 ~v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      .+.|.|.+.+      +.|++++.......   ............+.|.+......|.|.|+|.+.|.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999976      99999643211110   000112222334578888777778899999999876543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.39  E-value=1.5e-06  Score=55.40  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=44.8

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC---------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+.+|++|+|.|.... +...+.|+|++.....         .....+.|..++.+|+|.|.|....
T Consensus        11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            6788999999998765 4568999998865321         1245689999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.38  E-value=1.6e-06  Score=56.90  Aligned_cols=64  Identities=22%  Similarity=0.428  Sum_probs=43.2

Q ss_pred             EecCCCeEEEEEEecc------eeeeecccCcc-e--ec---c-----c----cC-CceEEE------EeeEEEEeeccc
Q psy3045          26 KKPGGESFALLCEAQE------NMWFKFIEGSS-R--KV---A-----V----PL-NDRVKQ------VSGTLIIKEAKV   77 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~------~~W~~~~~~~~-~--~~---~-----~----~~-~~~~~~------~~~~l~i~~~~~   77 (267)
                      .+.+|++|+|.|.+..      +.|++...+.. .  ..   .     .    .. ..++..      ....|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            5789999999998743      99999755411 0  00   0     0    00 223321      124699999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.38  E-value=5e-06  Score=53.63  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=28.7

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL  215 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v  215 (267)
                      ..+|.|.+++.+|+|.|.|.+.. +.|.......|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            56899999999999999999875 5566666665554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.38  E-value=2.4e-06  Score=53.02  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=39.1

Q ss_pred             EEEEeEeCCC-CCceEEEEECCccCCCC-------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         152 AQFTCKYEGN-PVKTISWMKDGKPVPDH-------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~-------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +.|.|.+.+. |.++++|+++++.+...       ..      +.|.+.....++.+.|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999875 88899999999887532       11      22334444455567999999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.38  E-value=6.3e-06  Score=54.76  Aligned_cols=65  Identities=22%  Similarity=0.507  Sum_probs=44.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCC----CceEEEEEC----Ccc--C----------CC--------------CCCCeEEec
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP----VKTISWMKD----GKP--V----------PD--------------HNEPVFRID  186 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~----~~~--~----------~~--------------~~~~~l~i~  186 (267)
                      +....+.+|+++.|.|.....+    ...+.|++.    +.+  +          ..              ....+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            3445788899999999865332    246899752    111  0          00              123569999


Q ss_pred             cCCCCCCeEEEEEEEcCCC
Q psy3045         187 SVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~~~~  205 (267)
                      +++.+|+|.|.|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.37  E-value=1.2e-06  Score=56.25  Aligned_cols=59  Identities=24%  Similarity=0.532  Sum_probs=44.4

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------E------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .|+.+.|.|.+.|+ | ...++|+++|..+....         +      +.|.+......+.+.|+|.|.|....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            58899999999998 5 46899999998765321         1      23455555556899999999997653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.37  E-value=7.4e-06  Score=54.60  Aligned_cols=66  Identities=18%  Similarity=0.440  Sum_probs=45.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCC----CceEEEEECCc---------------cCC--C--------------CCCCeEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP----VKTISWMKDGK---------------PVP--D--------------HNEPVFRI  185 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~~~---------------~~~--~--------------~~~~~l~i  185 (267)
                      +....+..|+.++|.|......    ...+.|++...               ...  .              ....+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            3444777899999999865332    24688976321               000  0              01257999


Q ss_pred             ccCCCCCCeEEEEEEEcCCCC
Q psy3045         186 DSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       186 ~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+++.+|+|.|.|.+.+....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999976543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.37  E-value=2e-06  Score=55.30  Aligned_cols=59  Identities=17%  Similarity=0.383  Sum_probs=41.5

Q ss_pred             cCCCEEEEeEeCC-CCCceEEEEECCccCC------------------------CCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         148 FGRPAQFTCKYEG-NPVKTISWMKDGKPVP------------------------DHNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       148 ~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~------------------------~~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .|++|+|.|.... .....+.|+++...+.                        ...+.+|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            4788888887654 3445788876532110                        01247899999999999999999998


Q ss_pred             CCCC
Q psy3045         203 EQES  206 (267)
Q Consensus       203 ~~~~  206 (267)
                      ..+.
T Consensus        83 ~~~~   86 (97)
T cd05775          83 KNGV   86 (97)
T ss_pred             CCCC
Confidence            7644

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.36  E-value=2.1e-06  Score=54.82  Aligned_cols=61  Identities=16%  Similarity=0.399  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEeEeCCC-CCce--EEEEECCccCCCCC-----------CCeEEeccCCCCCCe-EEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGN-PVKT--ISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKG-MYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~~~--~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g-~y~C~~~~~~~~  206 (267)
                      .+.+|+.++|.|.+.+. |.+.  +.||+++..+....           ..++++. +.++|.| .|+|.|.+....
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            56789999999999875 6665  79999998875421           2345554 4455555 999999987643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.34  E-value=2.4e-06  Score=53.01  Aligned_cols=55  Identities=27%  Similarity=0.529  Sum_probs=39.6

Q ss_pred             EEEEeEeCCC-CCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         152 AQFTCKYEGN-PVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ++|.|.+.|+ |...++|++||..+....              .+.|.+.....++...|+|.|.|..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999875 778999999998875321              124555544455667999999987643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.33  E-value=4.3e-05  Score=61.23  Aligned_cols=154  Identities=14%  Similarity=0.230  Sum_probs=90.2

Q ss_pred             EEEEeecccCCCeeEEEEEEcCC-CccE--EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSV-GGES--VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~-~~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      .|.|.+++..++|.|+=.+.+.. +...  ..+.+.+...|...+.+.                               .
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-------------------------------P  338 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-------------------------------P  338 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-------------------------------c
Confidence            59999999999999986665332 3333  334444444444333332                               5


Q ss_pred             EecCCCEEEEeEeCCC-C--CceEEEEECCccCCCC----------CC-----CeEEeccC-CCC-CCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDH----------NE-----PVFRIDSV-RKE-DKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~----------~~-----~~l~i~~~-~~~-d~g~y~C~~~~~~~  205 (267)
                      +.+|+...-.|.+..+ |  ...+.|++|+.++...          ++     ++|++... ..+ ..-..+|.+.+.-.
T Consensus       339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD  418 (566)
T PHA03269        339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD  418 (566)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence            6779999999998776 4  3489999998887531          11     23333211 111 13467999987543


Q ss_pred             CceEE-EEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEE
Q psy3045         206 SAQAS-GELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKK  261 (267)
Q Consensus       206 ~~~~~-~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~  261 (267)
                      ....+ +.-.+. ..+.+|.+.+     .+..|+.+   |.+...|.  ..+.|+-++..
T Consensus       419 sVS~tRfnAaatP~VY~~PtISm-----~FedG~AV---CtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        419 GVSHMKYSAAVTPDVYPFPNVSI-----EIIDGHIV---CLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             CchheecccccCCccccCCeEEE-----EEeCCEEE---EecccccCCCceEEEEecCCC
Confidence            33222 221111 1123444443     34444443   99988876  48999977654

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.33  E-value=1.1e-05  Score=49.49  Aligned_cols=71  Identities=13%  Similarity=0.318  Sum_probs=51.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECCcc-CC--CCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDGKP-VP--DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~~-~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .+..|++++|+|.....+  .+.+.|..-+.. ..  ..+..+|.+..+...|+|..+|.+............+.|
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V   85 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV   85 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence            677899999999986544  459999864433 21  236788999999999999999999865433334444443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.32  E-value=7e-06  Score=50.99  Aligned_cols=55  Identities=22%  Similarity=0.491  Sum_probs=39.3

Q ss_pred             EEEEeEeCCC-CCceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         152 AQFTCKYEGN-PVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +.|.|.+.+. |.+.|+|+++|..+...        +.      +.|.+.....++...|+|.|.|....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6799999876 88899999999876532        11      22333344455667999999998644

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.31  E-value=3.4e-06  Score=55.28  Aligned_cols=62  Identities=19%  Similarity=0.421  Sum_probs=45.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      +....+.+|++++|.|.+.+.. ...+.|||..  ....                     ......|.|.++..+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            4455888999999999987654 5689999743  1110                     01124689999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|.+.+
T Consensus        87 ~Ca~~~   92 (106)
T cd04980          87 YCQQYG   92 (106)
T ss_pred             EEEEeC
Confidence            999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.30  E-value=1.3e-05  Score=51.56  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=28.3

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL  215 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v  215 (267)
                      ...+|.|.+++.+|+|.|.|.+.. +.|.......|.|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            347799999999999999999874 4555555555554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.29  E-value=1.7e-06  Score=56.37  Aligned_cols=64  Identities=25%  Similarity=0.372  Sum_probs=43.9

Q ss_pred             EecCCCeEEEEEEecc-----eeeeecccC--cceeccc--------------cCCceEEE----EeeEEEEeecccCCC
Q psy3045          26 KKPGGESFALLCEAQE-----NMWFKFIEG--SSRKVAV--------------PLNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-----~~W~~~~~~--~~~~~~~--------------~~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      .+.+|++|+|.|.+..     +.|++...+  .......              ....|+..    ....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            4789999999999854     999997544  2210000              01223331    234799999999999


Q ss_pred             eeEEEEEEc
Q psy3045          81 GKYLCVVNN   89 (267)
Q Consensus        81 G~Y~C~~~~   89 (267)
                      |+|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999863

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.26  E-value=1.7e-05  Score=55.83  Aligned_cols=74  Identities=20%  Similarity=0.369  Sum_probs=55.3

Q ss_pred             EEEecCCCEEEEeEeC-CCCCceEEEEECCccCC----------------------CCCCCeEEeccCCCCCCeEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~----------------------~~~~~~l~i~~~~~~d~g~y~C~~  200 (267)
                      ..+.+|+++.|.|... +...+.++|.|....+.                      ......|.|.+++.+|+|.|.|.+
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            3788999999999974 55677899998643221                      013478999999999999999998


Q ss_pred             Ec-CCC-CceEEEEEEEec
Q psy3045         201 RN-EQE-SAQASGELKLGG  217 (267)
Q Consensus       201 ~~-~~~-~~~~~~~l~v~~  217 (267)
                      .. +.| ..+.+..|.|..
T Consensus       105 ~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EecCCCCCceeEEEEEEEc
Confidence            64 445 556677777764

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.26  E-value=1.8e-05  Score=51.20  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL  215 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v  215 (267)
                      ...+|.|.+++.+|+|.|.|.+.+ +.|..+....|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            356899999999999999999987 5565555555544

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.24  E-value=3.8e-06  Score=54.92  Aligned_cols=61  Identities=20%  Similarity=0.460  Sum_probs=45.1

Q ss_pred             EEecCCCEEEEeEeCCC-CCceEEEEECCcc--CC--------------------------CCCCCeEEeccCCCCCCeE
Q psy3045         145 TIDFGRPAQFTCKYEGN-PVKTISWMKDGKP--VP--------------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~--~~--------------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      .+.+|++++|.|..... +...+.|++....  ..                          ......|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46679999999988765 5668899884321  00                          0023578999999999999


Q ss_pred             EEEEEEcCCC
Q psy3045         196 YQCVIRNEQE  205 (267)
Q Consensus       196 y~C~~~~~~~  205 (267)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.23  E-value=6.4e-06  Score=52.76  Aligned_cols=66  Identities=27%  Similarity=0.353  Sum_probs=45.2

Q ss_pred             cCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..|+.+.|.|.+.+       +.|++++.......    .....+......+.|.+......|.+.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            57899999999988       89999744322211    11222333344556777777777999999999987643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.23  E-value=6.9e-06  Score=52.49  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             eEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCe-eEEEEEEcCCCc
Q psy3045          24 RFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG-KYLCVVNNSVGG   93 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~   93 (267)
                      ...+.+|+.++|.|.+.+        +.|++++....................+|.+. +.+.|.| .|+|.|.+..+.
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            345789999999999999        69999643322211111111222334566665 4455655 999999887644

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.23  E-value=9.4e-06  Score=54.10  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|....       +.|++...+......             .....|+...      ...|.|.++.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            5788999999999998642       899997443321110             0112344321      1369999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|+|.|.|.+..
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.20  E-value=3.1e-05  Score=50.90  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=32.3

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..+|.|.+++.+|+|.|.|.+.+.....+....|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            5789999999999999999999988777777777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.19  E-value=1.7e-05  Score=51.94  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..+|.|.+++.+|+|.|.|.+.......+....|.|.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            5789999999999999999999877666667777664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.18  E-value=9.1e-06  Score=54.20  Aligned_cols=62  Identities=19%  Similarity=0.425  Sum_probs=46.5

Q ss_pred             CceEEEecCCCEEEEeEeCC--CCCceEEEEECC--ccC-------------------CC-------C--CCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG--NPVKTISWMKDG--KPV-------------------PD-------H--NEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~--~p~~~~~W~~~~--~~~-------------------~~-------~--~~~~l~i~~~  188 (267)
                      +....+.+|++++|.|.+.+  .+...+.||+..  ...                   ..       .  ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44557888999999999876  567789999842  111                   00       0  2357899999


Q ss_pred             CCCCCeEEEEEEEc
Q psy3045         189 RKEDKGMYQCVIRN  202 (267)
Q Consensus       189 ~~~d~g~y~C~~~~  202 (267)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.18  E-value=2.4e-05  Score=48.00  Aligned_cols=72  Identities=24%  Similarity=0.323  Sum_probs=42.9

Q ss_pred             eEEEEEEecc------eeeeecccCcceecc-ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEE
Q psy3045          32 SFALLCEAQE------NMWFKFIEGSSRKVA-VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVT  103 (267)
Q Consensus        32 ~v~l~C~~~~------~~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~  103 (267)
                      .+.|.|.+.+      +.|++++........ .....+.....++|.+..-...|...|+|.+.|+.-. ......|.|.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            3689999999      999997433222111 1112222334567888655555566899999987643 3444455554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.16  E-value=6.7e-06  Score=54.49  Aligned_cols=62  Identities=18%  Similarity=0.481  Sum_probs=46.9

Q ss_pred             ceEEEecCCCEEEEeEeC-CCCCceEEEEECCcc-----CC----C---------------------CCCCeEEeccCCC
Q psy3045         142 TVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKP-----VP----D---------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~-----~~----~---------------------~~~~~l~i~~~~~  190 (267)
                      ....+.+|+++.|.|... ......+.|++....     +.    .                     ....+|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            445788999999999987 445668999984331     10    0                     0124699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy3045         191 EDKGMYQCVIRNE  203 (267)
Q Consensus       191 ~d~g~y~C~~~~~  203 (267)
                      +|+|.|.|.+...
T Consensus        89 ~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   89 SDSGTYFCQVSTS  101 (114)
T ss_dssp             GGEEEEEEEEEES
T ss_pred             CcCEEEEEEEEEC
Confidence            9999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.16  E-value=6.4e-05  Score=48.28  Aligned_cols=37  Identities=16%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL  215 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v  215 (267)
                      ...+|.|.+++.+|.|.|+|.+.+ +.|..+....|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            468899999999999999999998 6676666666654

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.15  E-value=2.6e-05  Score=51.17  Aligned_cols=62  Identities=21%  Similarity=0.528  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CC------CeEEeccCCCCCCe-EEEEEEEcCCCCc
Q psy3045         145 TIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKG-MYQCVIRNEQESA  207 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g-~y~C~~~~~~~~~  207 (267)
                      ....|+.++|.|.+.++ | ...++|++||+.+...        +.      +.|.+. ....|.+ .|+|.+.|.....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence            44568889999999986 5 3699999999887532        11      122233 2333333 5999999876433

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.15  E-value=0.00032  Score=55.30  Aligned_cols=154  Identities=12%  Similarity=0.241  Sum_probs=87.2

Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCcc--EEEEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGGE--SVETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      .|.|+++.-.|+|.|.-...+.....  ...+.+.+... +...+.+.                               .
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-------------------------------P  256 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-------------------------------P  256 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-------------------------------c
Confidence            68999999999997755544433332  23333333332 22222221                               4


Q ss_pred             EecCCCEEEEeEeCCC-C--CceEEEEECCccCCCCC---C--------------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDHN---E--------------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~~---~--------------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +..|+.....|.+..+ |  ...+.|++||.++....   .              +++.+........-..+|.+.....
T Consensus       257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            6679999999998776 4  33899999998764210   0              1232323223334488999987654


Q ss_pred             CceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEE
Q psy3045         206 SAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKK  261 (267)
Q Consensus       206 ~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~  261 (267)
                      ....+..-.+. ..+.+|.+.+     .+..|+.+   |.+...|. ..+.|+-++..
T Consensus       337 ~v~s~rnAaatP~VY~~P~ISv-----~FedG~AV---CtA~CVP~gV~lrWlVgD~p  386 (490)
T PHA03271        337 DMISTTNATAIPTVYHHPRISL-----AFKDGYAI---CTIECVPSGITVRWLVHDEP  386 (490)
T ss_pred             CceeeeecccCCccccCCeEEE-----EEeCCEEE---EeccccCCCcEEEEEecCCC
Confidence            33333211111 0123344333     44444444   88887775 48999976643

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.15  E-value=1e-05  Score=52.15  Aligned_cols=58  Identities=17%  Similarity=0.405  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEeEeCCC--CCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGN--PVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .+.+|++++|.|...+.  ....+.||+...  ...                     ......|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46679999999987654  455799987432  110                     00234689999999999999999


Q ss_pred             EEc
Q psy3045         200 IRN  202 (267)
Q Consensus       200 ~~~  202 (267)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.14  E-value=3.2e-05  Score=47.44  Aligned_cols=72  Identities=18%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      +-.+..|++++|+|....       ++|....+..-        .....+..+|.+.++...|+|..+|.+.........
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--------eeccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence            347889999999999854       89987422110        001124458999999999999999999876433445


Q ss_pred             EEEEEEE
Q psy3045          97 ETVLTVT  103 (267)
Q Consensus        97 ~~~l~V~  103 (267)
                      .+.+.|.
T Consensus        80 ~~~V~Vl   86 (88)
T cd07694          80 KLDIKVL   86 (88)
T ss_pred             EeeEEEE
Confidence            5555543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.12  E-value=7.6e-05  Score=47.51  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEE-cCCCCceEEEEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIR-NEQESAQASGELKL  215 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~l~v  215 (267)
                      ...+|.|.+++.+|+|.|+|.+. .+.|+.+.+..|.|
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            46899999999999999999985 56677777776655

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.06  E-value=5.2e-06  Score=53.57  Aligned_cols=60  Identities=18%  Similarity=0.427  Sum_probs=40.5

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ...++.++|.|.+.|+ | ...+.|++||..+..+         .+      +.|.+..-...+...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            3346779999999986 5 5689999999887421         11      2233433333446689999988753

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.04  E-value=9.6e-06  Score=52.34  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ||.+.+.+. ......+++.++|.|.+.+       +.|++++........    ....+......+.|.+..-...+..
T Consensus         1 pP~V~v~~p-~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~   79 (100)
T cd07699           1 APSVTIFPP-SSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHK   79 (100)
T ss_pred             CCeEEEECC-CHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence            354444442 2333456788999999999       899997443221110    1111233334456767666666678


Q ss_pred             eEEEEEEcCCC
Q psy3045          82 KYLCVVNNSVG   92 (267)
Q Consensus        82 ~Y~C~~~~~~~   92 (267)
                      .|+|.+.+...
T Consensus        80 ~~sC~V~H~~l   90 (100)
T cd07699          80 VYTCEVTHEGL   90 (100)
T ss_pred             eEEEEEEecCC
Confidence            99999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.03  E-value=2.6e-05  Score=51.99  Aligned_cols=63  Identities=19%  Similarity=0.403  Sum_probs=45.3

Q ss_pred             CceEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      +....+..|++++|.|..... ....+.|++..  ..+.                       ......|.|..+..+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            344578889999999987653 45679999832  1100                       012346899999999999


Q ss_pred             EEEEEEEcC
Q psy3045         195 MYQCVIRNE  203 (267)
Q Consensus       195 ~y~C~~~~~  203 (267)
                      .|.|.+...
T Consensus        86 ~Y~C~~~~~   94 (116)
T cd07706          86 KYFCALSTL   94 (116)
T ss_pred             EEEEEEECC
Confidence            999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.00  E-value=2.9e-05  Score=47.26  Aligned_cols=53  Identities=23%  Similarity=0.573  Sum_probs=36.8

Q ss_pred             EEEEeEeCCC-CC-ceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         152 AQFTCKYEGN-PV-KTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       152 v~l~C~~~~~-p~-~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++|.|.+.|+ |. ..+.|++||.++..+         .+      +.|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999987 54 599999999864321         11      234444445566779999998865

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.99  E-value=2.5e-05  Score=44.94  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=37.4

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .|.+|+|+|...+.   .+.|.+|+..+.. ....+.+.+-. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCCC
Confidence            48999999986533   3999999976655 33455555555 8899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.98  E-value=5e-05  Score=44.01  Aligned_cols=49  Identities=20%  Similarity=0.489  Sum_probs=39.2

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+.|.|.|...    .+|.|++ |..+......+|.+.....+..|.|.|.+++
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence            46799999652    4699999 6655544578899998889999999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.96  E-value=0.0054  Score=48.44  Aligned_cols=113  Identities=14%  Similarity=0.282  Sum_probs=74.4

Q ss_pred             ceEEEecCCCEEEEeEeC--CCC-CceEEEEECCccCCC--------------------------------CCCCeEEec
Q psy3045         142 TVQTIDFGRPAQFTCKYE--GNP-VKTISWMKDGKPVPD--------------------------------HNEPVFRID  186 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~--~~p-~~~~~W~~~~~~~~~--------------------------------~~~~~l~i~  186 (267)
                      ....+..|..+.|.|..+  |.. ..+..|+--|-++..                                -..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            344566699999999865  443 558899876655431                                024789999


Q ss_pred             cCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC-cEEEEEEeec--CCCCcEEEEECCEEcC
Q psy3045         187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASG--NPTPEISWYLDGKKLV  263 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~--~p~~~i~W~~~~~~l~  263 (267)
                      .+..+.+|-|.|+|...........-+.|...     +...    ...+|. .-...|.+-.  ..++++.|.-+|....
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-----V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-----VFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE-----EEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            99999999999999987655555555555321     1110    122333 3456797743  3456899999987643

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.96  E-value=7.1e-05  Score=48.20  Aligned_cols=60  Identities=27%  Similarity=0.478  Sum_probs=43.6

Q ss_pred             EEecCCCEEEEeEeCC-CCCceEEEEECCccC------------C------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEG-NPVKTISWMKDGKPV------------P------------DHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~------------~------------~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .+.+|++++|.|.... .....+.|++....-            .            ......|+|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5677999999998764 345678899854211            0            01225799999999999999999


Q ss_pred             EEcCC
Q psy3045         200 IRNEQ  204 (267)
Q Consensus       200 ~~~~~  204 (267)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.94  E-value=7.8e-05  Score=47.46  Aligned_cols=73  Identities=29%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ||.+.+.+.  ..   .|+.++|.|.+.+       +.|++++........    ....+......+.|.+   ...+.+
T Consensus         2 pP~v~v~~~--~~---~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~   73 (93)
T cd07698           2 PPEVRVTRK--RA---PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKA   73 (93)
T ss_pred             CCEEEEEec--CC---CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCC
Confidence            566655542  11   1788999999999       899997421111110    0111222223334444   334788


Q ss_pred             eEEEEEEcCCCc
Q psy3045          82 KYLCVVNNSVGG   93 (267)
Q Consensus        82 ~Y~C~~~~~~~~   93 (267)
                      .|+|.+.+....
T Consensus        74 ~ytC~V~H~~~~   85 (93)
T cd07698          74 RYSCRVEHSGLK   85 (93)
T ss_pred             EEEEEEEeCCCC
Confidence            999999886543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.91  E-value=3.1e-05  Score=49.25  Aligned_cols=59  Identities=15%  Similarity=0.373  Sum_probs=39.5

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .++.++|.|.+.|+ | ...++|+++|..+...         ++      +.|.+..-...+...|+|.+.|....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            35669999999986 5 4689999999876321         11      22334433334567999999987643

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.89  E-value=4.9e-05  Score=49.80  Aligned_cols=57  Identities=19%  Similarity=0.451  Sum_probs=40.7

Q ss_pred             EEecCCCEEEEeEeCCC-CCceEEEEECCcc---C--------C------------C----------CCCCeEEeccCCC
Q psy3045         145 TIDFGRPAQFTCKYEGN-PVKTISWMKDGKP---V--------P------------D----------HNEPVFRIDSVRK  190 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~---~--------~------------~----------~~~~~l~i~~~~~  190 (267)
                      .+.+|++++|.|...+. ....+.||+...-   .        .            .          .....|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999987653 3457999974321   0        0            0          0123589999999


Q ss_pred             CCCeEEEEEEE
Q psy3045         191 EDKGMYQCVIR  201 (267)
Q Consensus       191 ~d~g~y~C~~~  201 (267)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.88  E-value=0.00032  Score=44.70  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=26.8

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGE  212 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~  212 (267)
                      ...+|.|.+++.+|+|.|+|.+.. +.|..+....
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            468999999999999999999965 4565554443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.88  E-value=4.7e-05  Score=46.97  Aligned_cols=56  Identities=30%  Similarity=0.493  Sum_probs=36.0

Q ss_pred             eEEEEEEecc-------eeeeecccCcceeccc------------cCCceEEE------EeeEEEEeecccCCCeeEEEE
Q psy3045          32 SFALLCEAQE-------NMWFKFIEGSSRKVAV------------PLNDRVKQ------VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        32 ~v~l~C~~~~-------~~W~~~~~~~~~~~~~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|.|.+..       +.|++...+.......            ....|+..      ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789998776       7898864322110000            12344432      225799999999999999997


Q ss_pred             E
Q psy3045          87 V   87 (267)
Q Consensus        87 ~   87 (267)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd00096 Ig Immunoglobulin domain

Probab=97.88  E-value=7.5e-05  Score=44.25  Aligned_cols=53  Identities=40%  Similarity=0.815  Sum_probs=41.5

Q ss_pred             EEEEeEeCCCCCceEEEEECCccCCC-------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         152 AQFTCKYEGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~~~~~~~~-------------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +.|.|.+.+.+...+.|++++.....             .....|.+..+...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46889988877889999997755431             123568888999999999999998875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=97.86  E-value=8.6e-05  Score=43.97  Aligned_cols=59  Identities=34%  Similarity=0.456  Sum_probs=39.8

Q ss_pred             EEEEEEecc-----eeeeecccCcceecc--ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          33 FALLCEAQE-----NMWFKFIEGSSRKVA--VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        33 v~l~C~~~~-----~~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      +.|.|.+.+     +.|++++........  .............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468899876     999996432221111  01222233455689999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.83  E-value=6.1e-05  Score=43.67  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             CCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          30 GESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        30 g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      .++|.|.|.+.. +.|+++....            ...+.+|.+......-.|.|.|.+.+    ......|+|..
T Consensus         6 ~~~V~L~C~~~tsi~W~kG~~~~------------~~~~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY   65 (69)
T cd07691           6 EGKVFLKCNGATNITWKKGKEIL------------EVSNTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY   65 (69)
T ss_pred             CceEEEEecCCCcEEEecCcccc------------cccccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence            458999998755 9999942111            11145788888888889999999866    23344555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.83  E-value=0.00014  Score=46.22  Aligned_cols=61  Identities=18%  Similarity=0.439  Sum_probs=39.9

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CCCeEE---eccCCCCCCeEEEEEEEcCCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVFR---IDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~~~l~---i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +..|+.++|.|.+.|+ | ...++|++||..+...         ...++.   .-.+...+...|+|.+.+....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            3457889999999986 5 3489999999886542         111111   1122334556899999887543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.82  E-value=4.3e-05  Score=50.38  Aligned_cols=62  Identities=23%  Similarity=0.445  Sum_probs=40.4

Q ss_pred             ecCCCEEEEeEeCCC-CC-ceEEEEECCccCCCC----------CC------CeEEeccCCCCC-CeEEEEEEEcCCCCc
Q psy3045         147 DFGRPAQFTCKYEGN-PV-KTISWMKDGKPVPDH----------NE------PVFRIDSVRKED-KGMYQCVIRNEQESA  207 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~~~  207 (267)
                      ..++.++|.|.+.++ |. ..+.|++|+..+..+          +.      +.|.+......+ ...|+|.+.|.....
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            346779999999986 54 489999999776432          11      223333333323 458999999876544


Q ss_pred             e
Q psy3045         208 Q  208 (267)
Q Consensus       208 ~  208 (267)
                      .
T Consensus        96 ~   96 (115)
T cd05769          96 T   96 (115)
T ss_pred             c
Confidence            4

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.80  E-value=0.00023  Score=47.63  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=43.1

Q ss_pred             CceEEEecCCCEEEEeEeCCC------CCceEEEEECCcc-----C----C-------------------CCCCCeEEec
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN------PVKTISWMKDGKP-----V----P-------------------DHNEPVFRID  186 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~------p~~~~~W~~~~~~-----~----~-------------------~~~~~~l~i~  186 (267)
                      |....+..|+.|+|.|.....      ....+.|++...-     +    .                   ......|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            444578889999999975422      1346889974321     0    0                   0112569999


Q ss_pred             cCCCCCCeEEEEEEEcC
Q psy3045         187 SVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~~  203 (267)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.78  E-value=5.2e-05  Score=48.39  Aligned_cols=61  Identities=13%  Similarity=0.338  Sum_probs=38.3

Q ss_pred             EEecCCCEEEEeEeCCC--C-CceEEEEECCccCCC--------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGN--P-VKTISWMKDGKPVPD--------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~--p-~~~~~W~~~~~~~~~--------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+..|+..+|.|.+.|+  | ...++|.||+.....        ..+      +.|.+..-...+.-.|+|.+.|...
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            45568999999999988  4 448899998743211        111      2233332223344589999988753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.78  E-value=0.00032  Score=46.06  Aligned_cols=67  Identities=22%  Similarity=0.334  Sum_probs=39.5

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCcceecc-c-cCCc-eEEEEeeEEEEeecccCCC-eeEEEEEEcCCCc
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-V-PLND-RVKQVSGTLIIKEAKVEDS-GKYLCVVNNSVGG   93 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-~-~~~~-~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~   93 (267)
                      ....|+.++|.|.+.+       ++|++|+........ . ...+ ......+.|.+..- ..|. ..|+|.+.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence            4557889999999999       899997543221100 0 1111 12333445656543 3343 4599999986543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.77  E-value=0.0003  Score=43.57  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             EEEEEEecc------eeeeecccCcceec--cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          33 FALLCEAQE------NMWFKFIEGSSRKV--AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        33 v~l~C~~~~------~~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      +.|.|.+.+      +.|++++.......  ......+.....+.|.+......+.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999977      99999743221110  01112222233445666655556667999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.77  E-value=0.0001  Score=48.61  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec-----cccCCceEEEEeeEEEEeecccCC-
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-----AVPLNDRVKQVSGTLIIKEAKVED-   79 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d-   79 (267)
                      +|.+.+.+. ....+.+++.++|.|.+.+       +.|++++.......     ....++......+.|.+......+ 
T Consensus         2 ~P~V~v~~p-s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~   80 (115)
T cd05769           2 PPTVAIFPP-SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP   80 (115)
T ss_pred             CCEEEEECc-ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence            354444432 2333446788999999999       89999753322111     111111334445667776655544 


Q ss_pred             CeeEEEEEEcCCCc
Q psy3045          80 SGKYLCVVNNSVGG   93 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~   93 (267)
                      ...|+|.+.+....
T Consensus        81 ~~~ytC~V~H~g~~   94 (115)
T cd05769          81 RNTFTCIVQFYGGT   94 (115)
T ss_pred             CCeEEEEEEEeCCc
Confidence            56899999987544

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.76  E-value=9.9e-05  Score=48.04  Aligned_cols=66  Identities=11%  Similarity=0.177  Sum_probs=45.2

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCccee---------ccccCCceEE------EEeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRK---------VAVPLNDRVK------QVSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d   79 (267)
                      ....+..|+.++|.|.+.+        +.|+|..++....         .......++.      ...-+|.+.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            4667889999999999977        8899975542110         0001222221      122479999999999


Q ss_pred             CeeEEEEEE
Q psy3045          80 SGKYLCVVN   88 (267)
Q Consensus        80 ~G~Y~C~~~   88 (267)
                      ++.|.|...
T Consensus        86 Ta~Y~Ca~e   94 (115)
T cd05721          86 TDIYFCKIE   94 (115)
T ss_pred             CeEEEEEee
Confidence            999999873

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.75  E-value=0.00011  Score=47.92  Aligned_cols=58  Identities=19%  Similarity=0.471  Sum_probs=39.1

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCc----cC------CC---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGK----PV------PD---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~----~~------~~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.........+.|++...    .+      ..                     .....|.|..++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            35568888888876544445688887432    11      00                     1124689999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      |+|.|.+..
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.75  E-value=5.4e-05  Score=48.98  Aligned_cols=59  Identities=19%  Similarity=0.520  Sum_probs=37.2

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC------------CCe------EEeccCCCCCCeEEEEEEEcCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN------------EPV------FRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~------------~~~------l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ..+..++|.|.+.|+ | ...++|++||.++....            ..+      |.+..-...+...|+|.+.|...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            346789999999987 4 34789999998764210            122      22222222345578888888653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.70  E-value=0.00014  Score=47.12  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=40.9

Q ss_pred             ecCCCeEEEEEEecc-------eeeeecccCcceec---cc-cCC---ceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKV---AV-PLN---DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~-~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      +..|+.++|.|.+.+       +.|++++.......   .. ...   +......+.|.+..-.+.+...|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            445788999999999       89999754322111   01 111   23333445666655545566789999998653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.69  E-value=0.00091  Score=41.48  Aligned_cols=61  Identities=16%  Similarity=0.154  Sum_probs=37.8

Q ss_pred             EEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          33 FALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        33 v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      +.|.|.+.+      +.|++++.......   ......+.....+.|.+......|...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999999      99999743221111   00111123333456666666666778999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.68  E-value=0.00028  Score=44.87  Aligned_cols=57  Identities=23%  Similarity=0.520  Sum_probs=37.3

Q ss_pred             CCCEEEEeEeCCC-CC-ceEEEEECCccCCC---------CCCCeE---EeccCCCCCCeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGN-PV-KTISWMKDGKPVPD---------HNEPVF---RIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~---------~~~~~l---~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ++.++|.|.+.|+ |. ..+.|++++..+..         ..+...   ....+...+.+.|+|.+.|...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            6789999999996 54 38999999853211         111111   1223344577899999988754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.67  E-value=0.00088  Score=42.53  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             eeEEecCCCeEEE-EEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFAL-LCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l-~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+.+|+.+.+ .|.+.+      +.|+.+..|..........++.....+.|.+......|.-.++|.+.+..-.
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            4677889999999 999888      9999875554322222233334455567777666666667999999987543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.67  E-value=0.00021  Score=45.43  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      .++.+.|.|.+.+       +.|++++.......    .....+......+.|.+..-...+...|+|.+.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            4567999999999       89999744321110    1111222333445666665555567899999988653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.66  E-value=0.00038  Score=44.28  Aligned_cols=64  Identities=23%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             ecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      +..|+.++|.|.+.+       +.|++++.......    .....+......+.|.+   ...+...|+|.+.+....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCC
Confidence            346899999999999       89999754322210    00111112222334444   344667999999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.65  E-value=0.00028  Score=44.44  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=39.8

Q ss_pred             CCeEEEEEEecc------eeeeecccCc---ceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          30 GESFALLCEAQE------NMWFKFIEGS---SRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        30 g~~v~l~C~~~~------~~W~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      |+.+.|.|.+.+      +.|+.++...   ..........+.....+.|.+..-...+...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            789999999888      9999864322   011111122333334456777654445567899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.64  E-value=0.001  Score=42.41  Aligned_cols=68  Identities=13%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             cCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          28 PGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        28 ~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      .......+.|.+.+      +.|+++..+..........++.....+.|.+......|...|+|.+.|......
T Consensus        13 ~~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          13 GGEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             CCCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            34456688999976      999996333322222222333344455677755555556689999998765443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.62  E-value=0.00066  Score=42.07  Aligned_cols=61  Identities=21%  Similarity=0.294  Sum_probs=38.4

Q ss_pred             EEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          33 FALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        33 v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ++|.|.+.+      +.|++++.......   .....++.....+.|.+......+...|+|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999999      89999754322111   11122233344556777655566677999999886543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.61  E-value=0.0011  Score=42.05  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             ecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045          27 KPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        27 v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  100 (267)
                      ......+.+.|.+.+      +.|+++..+..........++.....+.|.+......|...|+|.+.|........+.+
T Consensus        12 ~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          12 AGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             cCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            344456789999887      99999743332222212222223334567665555555668999999976554444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.60  E-value=0.00045  Score=43.74  Aligned_cols=57  Identities=23%  Similarity=0.493  Sum_probs=37.9

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCCeEEe---ccCCCCCCeEEEEEEEcCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVFRI---DSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~~l~i---~~~~~~d~g~y~C~~~~~~  204 (267)
                      .|...+|.|.+.|+ | ...+.|.+||..+...        .+.+..+   ..+...+...|+|.+.+..
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            36667899999986 4 5589999999886521        1111111   1234556678999998864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.60  E-value=0.00061  Score=43.30  Aligned_cols=66  Identities=14%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             CCEEEEeEeC-CCCCceEEEEECCccCC------CCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         150 RPAQFTCKYE-GNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       150 ~~v~l~C~~~-~~p~~~~~W~~~~~~~~------~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ..+.+.|.+. +.|.++|+|+++.....      ..+     .+.|.+.....++...|+|.+.|........+.+.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l   93 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL   93 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence            3488999876 56899999998732211      111     134555444444555999999998765555555544

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02982 hypothetical protein; Provisional

Probab=97.59  E-value=0.0012  Score=47.16  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=53.2

Q ss_pred             eEEecCCCeEEEEEEecc------eeeeecccCcce---------ecc--cc--CC----ceEEEEeeEEEEeecccCCC
Q psy3045          24 RFKKPGGESFALLCEAQE------NMWFKFIEGSSR---------KVA--VP--LN----DRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~---------~~~--~~--~~----~~~~~~~~~l~i~~~~~~d~   80 (267)
                      ++....|++|.|.|....      ..|+++++.-..         +..  .+  +.    ..+....++|+|+++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            566788999999999776      889985321111         000  00  01    11223457999999999999


Q ss_pred             eeEEEEEEcCCCc-cEEEEEEEE
Q psy3045          81 GKYLCVVNNSVGG-ESVETVLTV  102 (267)
Q Consensus        81 G~Y~C~~~~~~~~-~~~~~~l~V  102 (267)
                      |.|+|.+....+. ......|.|
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             CceEEEEecCCCchheeheeeeE
Confidence            9999999987655 444666666

>PHA02633 hypothetical protein; Provisional

Probab=97.59  E-value=0.00029  Score=39.82  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=32.7

Q ss_pred             eeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEec
Q psy3045          67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        67 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      ...|+|.++..+|+|.|.|.+.|..-....++.|+|...
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            347999999999999999999987766777788887754

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.59  E-value=0.0004  Score=46.29  Aligned_cols=60  Identities=18%  Similarity=0.435  Sum_probs=42.1

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC---------------C---CC----------CCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV---------------P---DH----------NEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~---------------~---~~----------~~~~l~i~~~~~  190 (267)
                      ...+.+|++++|.|...+..  ...+.||+..  ..+               .   .+          ....|+|.++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            34788899999999875432  4568999832  111               0   00          113689999999


Q ss_pred             CCCeEEEEEEEc
Q psy3045         191 EDKGMYQCVIRN  202 (267)
Q Consensus       191 ~d~g~y~C~~~~  202 (267)
                      +|+|.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.56  E-value=0.00026  Score=45.17  Aligned_cols=79  Identities=18%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCccee-ccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRK-VAVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      +|.+.+.+. ....+..+..++|.|.+.+        +.|.+++...... ......+......+.|.+..-.+.....|
T Consensus         3 ~PsV~l~pP-s~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y   81 (99)
T cd04986           3 KPSLSLQRP-ALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF   81 (99)
T ss_pred             CCEEEEECc-ChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence            344444431 2233447889999999988        8999975431111 11112233334445676665555555679


Q ss_pred             EEEEEcCCC
Q psy3045          84 LCVVNNSVG   92 (267)
Q Consensus        84 ~C~~~~~~~   92 (267)
                      +|.+.+...
T Consensus        82 tC~V~H~~l   90 (99)
T cd04986          82 ACTVTHPEG   90 (99)
T ss_pred             EEEEECCCc
Confidence            999998653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.56  E-value=0.00046  Score=43.81  Aligned_cols=54  Identities=26%  Similarity=0.713  Sum_probs=37.0

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .++..+|.|.+.|+ | ...++|.+||..+..+         ..      ..|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence            35668999999996 5 4589999999887532         11      12333   3345568999998865

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.55  E-value=0.00061  Score=41.36  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             eEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          32 SFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        32 ~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .++|.|.+.+       +.|++++........    ....+......+.|.+......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            3689999999       899996442111100    01123333344567776656677789999998764

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.55  E-value=0.0011  Score=42.16  Aligned_cols=61  Identities=25%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             cCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ..|+..+|.|.+.+       ++|.+++.......    .....+........|.+.   ..+...|+|.+.+..
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            34667899999999       89999744321110    011112222223445554   345669999998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00066  Score=43.33  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=41.5

Q ss_pred             EecCCCeEEEEEEecc--------eeeeecccCcce---eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          26 KKPGGESFALLCEAQE--------NMWFKFIEGSSR---KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      .+..|+.++|.|.+.+        +.|++++.....   .......+......+.|.+..-.+.+...|+|.+.+....
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            3556899999999998        799996421111   1111122223334455666655555566899999987543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00076  Score=42.97  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcceec---cccCC-ceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRKV---AVPLN-DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .++.++|.|.+.+       +.|++++.. ....   ..... +........|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4677999999999       899997553 1111   00111 2222333456665544334668999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.52  E-value=0.00055  Score=43.34  Aligned_cols=61  Identities=16%  Similarity=0.087  Sum_probs=35.7

Q ss_pred             ecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      +..|...+|.|.+.+       +.|++|+.... ...    ....+........|.   +...+...|+|.+.+..
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTE---FTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEE---ECCCCCCeEEEEEEECC
Confidence            345777899999999       89999744322 110    001111111122333   34567788999999854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.51  E-value=0.00017  Score=41.51  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             cCCCeEEEEEEecc--eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          28 PGGESFALLCEAQE--NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        28 ~~g~~v~l~C~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      -.|.+|+|+|....  +.|.++++..        ..    .+..+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~~i~W~~n~~~~--------~g----~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGDDIKWKKNDQVS--------QG----SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCCCceEEeCCccC--------CC----CCceEEeeccC-CCCceEEEEeCCC
Confidence            36899999998655  9999963211        00    11234444444 8899999999543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.51  E-value=0.00026  Score=44.61  Aligned_cols=58  Identities=26%  Similarity=0.531  Sum_probs=40.6

Q ss_pred             CCCEEEEeEeC-CCCCceEEEEECCccCCC---------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         149 GRPAQFTCKYE-GNPVKTISWMKDGKPVPD---------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       149 g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~---------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |+.+.+.|.+. ++|.+.++|+.++..+..         ..     .+.|.+..-..++...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            67899999865 568999999999987721         11     134555544445667999999997644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.46  E-value=0.0016  Score=40.39  Aligned_cols=62  Identities=21%  Similarity=0.308  Sum_probs=38.8

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcce----eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSR----KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      .++.+.|.|.+.+       +.|++++.....    .......++.....+.|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            4899999999999       999996432211    11111123333344456555   56667999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.43  E-value=0.00035  Score=43.38  Aligned_cols=56  Identities=25%  Similarity=0.557  Sum_probs=39.2

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------E------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .++.+.|.|.+.++ | ...+.|++++..+....         +      +.|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            37889999999886 5 44899999998765321         1      233333   55566899999887643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.43  E-value=0.00035  Score=44.47  Aligned_cols=58  Identities=19%  Similarity=0.407  Sum_probs=36.3

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCCeEEe---ccCCCC-CCeEEEEEEEcCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVFRI---DSVRKE-DKGMYQCVIRNEQ  204 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~~l~i---~~~~~~-d~g~y~C~~~~~~  204 (267)
                      ..++.++|.|.+.++ | ...++|.+||..+..+        +..+..+   ..+..+ ....|+|.+.+..
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence            346778999999986 4 4588999999876432        1112221   122332 2346999998854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02633 hypothetical protein; Provisional

Probab=97.39  E-value=0.00078  Score=38.12  Aligned_cols=41  Identities=24%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       176 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +..+...|.|-++..+|+|.|.|...|..-....++.+.|.
T Consensus        13 p~~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         13 LIDNCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cccccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            33466788899999999999999999987777777777764

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.38  E-value=0.0021  Score=40.86  Aligned_cols=68  Identities=16%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             EEEecCCCEEE-EeEeC-CCCCceEEEEECCccCC-----CCCC------CeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         144 QTIDFGRPAQF-TCKYE-GNPVKTISWMKDGKPVP-----DHNE------PVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       144 ~~~~~g~~v~l-~C~~~-~~p~~~~~W~~~~~~~~-----~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      ..+..|+.+.+ .|.+. +.|.++|+|+.+.....     ...+      +.+.+......|.-.++|.+.|..-.....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~   90 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFR   90 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCce
Confidence            36677888888 89865 56899999998632211     1111      234444344445559999999986543333


Q ss_pred             E
Q psy3045         211 G  211 (267)
Q Consensus       211 ~  211 (267)
                      .
T Consensus        91 ~   91 (97)
T cd07704          91 I   91 (97)
T ss_pred             e
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.36  E-value=0.0021  Score=40.95  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             CCEEEEeEeC-CCCCceEEEEECCccCC------CCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         150 RPAQFTCKYE-GNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       150 ~~v~l~C~~~-~~p~~~~~W~~~~~~~~------~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ....+.|.+. |.|.++|+|+++.....      ..+     .+.|.+.....++...|+|.+.|..........+.+
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L   93 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTL   93 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEe
Confidence            4478899985 67999999999721110      011     134555444444555999999998755554444443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.35  E-value=0.00086  Score=42.71  Aligned_cols=56  Identities=13%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .++.++|.|.+.++ | ...++|++||.. ..+         ++      +.|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            36679999999987 4 458999999986 221         01      122222222223457888888865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.34  E-value=0.00023  Score=47.42  Aligned_cols=77  Identities=10%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             EecCCCeEEEEEEecc----------eeeeecccCcc-------ee-ccccCC---ceEEEEeeEEEEeecccCCCeeEE
Q psy3045          26 KKPGGESFALLCEAQE----------NMWFKFIEGSS-------RK-VAVPLN---DRVKQVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~----------~~W~~~~~~~~-------~~-~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ...-+++|.|.|.+..          +.|..+++..-       .. ......   ..+..++.+|.+.....- .|+|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            5567899999999966          89987532110       00 000001   112234457888775444 89999


Q ss_pred             EEEEcCCCccEEEEEEEEE
Q psy3045          85 CVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~  103 (267)
                      |.+.......+..+.|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9998877666666666553

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.33  E-value=0.0011  Score=42.21  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=35.9

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCccee----ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRK----VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .+..+..++|.|.+.+       +.|.+++......    .....++ .....+.|.+..-.  ....|+|.+.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            3344678999999999       8999974432111    1111122 22333455554332  2345999998843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.31  E-value=0.00039  Score=44.40  Aligned_cols=59  Identities=17%  Similarity=0.360  Sum_probs=37.8

Q ss_pred             EecCCCEEEEeEeCCC--C-CceEEEEECCccCCC-------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN--P-VKTISWMKDGKPVPD-------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~--p-~~~~~W~~~~~~~~~-------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ...++.++|.|.+.++  | ...+.|.++|.. ..       ..+      +.|.+..-.......|+|.+.|...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            4457889999999885  3 458999998864 11       111      2343333233444579999988754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.27  E-value=0.0007  Score=41.58  Aligned_cols=22  Identities=36%  Similarity=0.771  Sum_probs=18.7

Q ss_pred             CCCeEEeccCCCCCCeEEEEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~  200 (267)
                      ....|.|.+++.+|+|.|.|.+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       60 NDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CEEEEEEcCCCHHHCEEEEEcC
Confidence            3467999999999999999963

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.27  E-value=0.002  Score=40.96  Aligned_cols=43  Identities=33%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CceEEE--EeeEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEE
Q psy3045          60 NDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTV  102 (267)
Q Consensus        60 ~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V  102 (267)
                      ..|+..  .+-+|.|+.++..|+|.|.-++++..|.. .....+.|
T Consensus        61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            445544  34589999999999999999999988874 34444444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG1480|consensus

Probab=97.11  E-value=0.0004  Score=59.07  Aligned_cols=62  Identities=23%  Similarity=0.467  Sum_probs=48.9

Q ss_pred             EEecCCCEEEEeEe-CCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .|..+..+.+.|.. .+.|...+.|++++..+....      ...+.+..+...|.|.|+|+|.|....
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence            67778888888875 466888999999987776532      356778888899999999999987644

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.11  E-value=0.0057  Score=48.86  Aligned_cols=83  Identities=13%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISW  255 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W  255 (267)
                      ..+.|.|..++...+|.|+=..-+..+.......+.|.- +.+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.|
T Consensus       180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrW  256 (466)
T PHA03270        180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM-FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRW  256 (466)
T ss_pred             CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence            356799999999999999988766554433333344432 46787777654  46789999999999876555   7999


Q ss_pred             EECCEEcCC
Q psy3045         256 YLDGKKLVN  264 (267)
Q Consensus       256 ~~~~~~l~~  264 (267)
                      |+||.++..
T Consensus       257 f~ng~~V~~  265 (466)
T PHA03270        257 FEGGDEVFA  265 (466)
T ss_pred             EeCCccccC
Confidence            999998864

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.06  E-value=0.0047  Score=40.37  Aligned_cols=56  Identities=20%  Similarity=0.370  Sum_probs=39.6

Q ss_pred             EEecCCCEEEEeEeCCCC--C-ceEEEEECCccC-C-------------------------CCCCCeEEeccCCCCCCeE
Q psy3045         145 TIDFGRPAQFTCKYEGNP--V-KTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~-~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      .+..|+.++|.|..++..  . -.+.|+|+.... .                         +.+...|.+.+++.+|.+.
T Consensus         9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~   88 (115)
T cd05721           9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI   88 (115)
T ss_pred             EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence            677788899999887653  2 478888743221 0                         0123568889999999999


Q ss_pred             EEEEE
Q psy3045         196 YQCVI  200 (267)
Q Consensus       196 y~C~~  200 (267)
                      |.|..
T Consensus        89 Y~Ca~   93 (115)
T cd05721          89 YFCKI   93 (115)
T ss_pred             EEEEe
Confidence            99985

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.94  E-value=0.0062  Score=48.40  Aligned_cols=83  Identities=19%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEEE
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWY  256 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~  256 (267)
                      ...+.|.++.-.++|.|.-...+.....-....+.+...+.||.+.+.+.  .+.+|++..-.|.+..+.+|   .+.||
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf  283 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR  283 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            46788999999999966555554433333333344444457887777664  46789999999999876555   79999


Q ss_pred             ECCEEcCC
Q psy3045         257 LDGKKLVN  264 (267)
Q Consensus       257 ~~~~~l~~  264 (267)
                      +||..+..
T Consensus       284 ~nG~~V~~  291 (490)
T PHA03271        284 QNGNIATP  291 (490)
T ss_pred             eCCccccC
Confidence            99988754

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.94  E-value=0.0048  Score=39.06  Aligned_cols=72  Identities=14%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCC--c-eEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLN--D-RVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~l~i~~~~~~d~G   81 (267)
                      +|.|...+     .+.+|..+++.|.+.+        +.|+++.... ....+...  . ........+++.. +++|.|
T Consensus         3 ~p~i~~~~-----~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l-~~~~f~~~~~~ks~~~~~~~vtftp-treD~g   75 (99)
T cd07689           3 DPEILLSG-----PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL-PSKSFLEDMDKKSLETKSLEVTFTP-TIEDIG   75 (99)
T ss_pred             CccCcccC-----cccCCceEEEEEEecCcccCCceEEEEecCccee-cccccccccccCCCCCcceeEEEec-chhhCC
Confidence            45565555     5689999999999996        8998852211 11111100  0 0001112344443 477777


Q ss_pred             -eEEEEEEcCC
Q psy3045          82 -KYLCVVNNSV   91 (267)
Q Consensus        82 -~Y~C~~~~~~   91 (267)
                       .|.|.|.-..
T Consensus        76 ~~fsC~A~L~l   86 (99)
T cd07689          76 KVLVCRAKLHI   86 (99)
T ss_pred             cEEEEEEEEee
Confidence             9999997543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.90  E-value=0.019  Score=45.55  Aligned_cols=82  Identities=16%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcc--e---------eccccCCceE----------EEEeeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSS--R---------KVAVPLNDRV----------KQVSGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~--~---------~~~~~~~~~~----------~~~~~~l~i~   73 (267)
                      +.+.+..|..|.|.|.+..        ..|...+=...  .         .....-...+          ...+++|+|+
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            5788889999999999876        88875310000  0         0000001111          1234689999


Q ss_pred             ecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          74 EAKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      ++..+..|.|+|.+............|.|..
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d  382 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVAD  382 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEecc
Confidence            9999999999999987765566666666654

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.89  E-value=0.0092  Score=48.18  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=59.4

Q ss_pred             CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEEEE
Q psy3045         181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYL  257 (267)
Q Consensus       181 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~  257 (267)
                      ..|+|..++...+|.|+=.+.+..+.......+.|.- +.+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.||.
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~  274 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYK  274 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            5599999999999999855445444333344455432 46787777654  47899999999999876554   799999


Q ss_pred             CCEEcC
Q psy3045         258 DGKKLV  263 (267)
Q Consensus       258 ~~~~l~  263 (267)
                      ||.++.
T Consensus       275 dg~~V~  280 (486)
T PHA03273        275 NAKEVD  280 (486)
T ss_pred             CCeecc
Confidence            999887

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.86  E-value=0.01  Score=37.56  Aligned_cols=59  Identities=19%  Similarity=0.375  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEeEeCCC-CC--ceEEEEECCccCCCC-------------CCCeEEeccCCCCCCe-EEEEEEEcCC
Q psy3045         145 TIDFGRPAQFTCKYEGN-PV--KTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKG-MYQCVIRNEQ  204 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~--~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g-~y~C~~~~~~  204 (267)
                      .+..|..+++.|.+.+. |.  ..+.|+++...+...             ....+++.. .++|.| .|+|.|.-..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            44679999999998754 53  589999876544311             224555655 477776 9999997543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.78  E-value=0.012  Score=47.79  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCC-CCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEE
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EIS  254 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~  254 (267)
                      ....|.|..++..++|.|.=.+.+.. +.......+.|.. +.+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~Svrlr  363 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVK  363 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence            34669999999999999986554322 2223344444443 36776666554  57899999999999876554   799


Q ss_pred             EEECCEEcCC
Q psy3045         255 WYLDGKKLVN  264 (267)
Q Consensus       255 W~~~~~~l~~  264 (267)
                      ||+||.++..
T Consensus       364 Wf~ng~~V~~  373 (566)
T PHA03269        364 WTSNFGNIGK  373 (566)
T ss_pred             EEeCCcccCc
Confidence            9999988874

>TIGR00864 PCC polycystin cation channel protein

Probab=96.61  E-value=0.66  Score=46.66  Aligned_cols=191  Identities=14%  Similarity=0.136  Sum_probs=108.1

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE--EcCCCccEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV--NNSVGGESV   96 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~   96 (267)
                      +..+..|++|.|.-.+..     +.|..++ +....   .....+          .-+-...|.|.-.+  .|..+....
T Consensus      1706 ~~~aavn~~V~fs~~lt~GS~vty~W~~gd-G~s~~---~s~p~~----------tHtf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864      1706 DNPAAVNALINLSAELAEGSGLQYRWFLEE-GDDLE---TSEPFM----------SHSFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred             CCcccCCCeEEEEEEecCCCCcEEEEEECC-CCCcc---cCCCce----------EEEccCCceEEEEEEEEccccccce
Confidence            345677899988876665     7777642 11100   001100          01123367786555  577777666


Q ss_pred             EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCC
Q psy3045          97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP  176 (267)
Q Consensus        97 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~  176 (267)
                      ...+.|.++..-.   .....         |            ......+..|..+.+.-.+.......+.|.+++..-.
T Consensus      1772 s~~V~VqepV~GL---~i~~~---------~------------~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~ 1827 (2740)
T TIGR00864      1772 SEEVDVQEPISGL---KIRAA---------D------------AGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK 1827 (2740)
T ss_pred             eEEEEEEeccccc---eEecC---------C------------CCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc
Confidence            6777776543211   11000         0            0000023346666665554433445788888754321


Q ss_pred             CCCCCeEEeccCCCCCCeEEEEE--EEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEE
Q psy3045         177 DHNEPVFRIDSVRKEDKGMYQCV--IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS  254 (267)
Q Consensus       177 ~~~~~~l~i~~~~~~d~g~y~C~--~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  254 (267)
                      .  ....   ..+..+.|.|+-.  |.|..+....+..+.|+...  -.+........+..|+.+.|.+.+...+...+.
T Consensus      1828 ~--gk~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I--~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~ 1900 (2740)
T TIGR00864      1828 M--GKHA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPI--FGLELKASKKIAAIGEKVEFQILLAAGSAVNFR 1900 (2740)
T ss_pred             c--ccee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEec--ceEEEecccccccCCCEEEEEEEecCCCceEEE
Confidence            1  1111   1456688999876  57888888888888887522  122223334466789999999988877788999


Q ss_pred             EEECC
Q psy3045         255 WYLDG  259 (267)
Q Consensus       255 W~~~~  259 (267)
                      |..++
T Consensus      1901 w~fGd 1905 (2740)
T TIGR00864      1901 LQIGG 1905 (2740)
T ss_pred             EEeCC
Confidence            98764

Note: this model has been restricted to the amino half because for technical reasons.

>PHA02982 hypothetical protein; Provisional

Probab=96.55  E-value=0.051  Score=39.21  Aligned_cols=108  Identities=10%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             EecCCCEEEEeEeCCC-CCceEEEEECCc-cCC---------------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         146 IDFGRPAQFTCKYEGN-PVKTISWMKDGK-PVP---------------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p~~~~~W~~~~~-~~~---------------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      ...++.|.|.|..... ...+..|..+.. .+.                           ..+.++|++..+..+..|-|
T Consensus        36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY  115 (251)
T PHA02982         36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF  115 (251)
T ss_pred             ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence            3447788888874332 344667765332 121                           12468999999999999999


Q ss_pred             EEEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEE
Q psy3045         197 QCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  261 (267)
Q Consensus       197 ~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~  261 (267)
                      +|.+....+..+. ..-+.++.    -.+...    .......-.+.|-+-..-.+-..|.-+|..
T Consensus       116 tc~~ks~~~k~E~c~kCl~V~~----~~V~~~----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        116 TCEAKDAEGKEETCEKCLEIQK----EDILYV----VEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             EEEEecCCCchheeheeeeEec----ceEEEE----EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999986655444 44455521    111110    011223345789875443333388877753

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.37  E-value=0.004  Score=41.65  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEeEeCCC-----CCceEEEEECCccCCC---C-------------------CCCeEEeccCCCCCCeEEE
Q psy3045         145 TIDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPD---H-------------------NEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~---~-------------------~~~~l~i~~~~~~d~g~y~  197 (267)
                      ....+++|.|.|.+...     +...+.|.+++..+-.   .                   ...+|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            44568999999998752     2457999998876521   1                   1133555543322 79999


Q ss_pred             EEEEcCCCCceEEEEEEE
Q psy3045         198 CVIRNEQESAQASGELKL  215 (267)
Q Consensus       198 C~~~~~~~~~~~~~~l~v  215 (267)
                      |++.....+.+....|..
T Consensus       102 CeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEE
Confidence            999987766666666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03042 CD47-like protein; Provisional

Probab=96.02  E-value=0.05  Score=40.96  Aligned_cols=69  Identities=17%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             EecCCCEEEEeEeCCC-----CCceEEEEECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         146 IDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ...++++.+.|.++..     ....+.|.+++..+-..   +.++|.+.. ...-.|+|+|+|.+...+......+..
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence            3458999999998653     35579999998876322   334555543 334489999999876555544444443

>TIGR00864 PCC polycystin cation channel protein

Probab=95.99  E-value=2.1  Score=43.42  Aligned_cols=184  Identities=14%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             EecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE--EcCCCccEEEE
Q psy3045          26 KKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV--NNSVGGESVET   98 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~   98 (267)
                      .+..|.++.|.-.+..     +.|..++. ...     ..       ...   ..+-.+.|.|+-.+  .|..+......
T Consensus      1796 ~~~ag~~v~F~a~vstGsnVsw~W~f~~g-~s~-----~g-------k~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~ 1859 (2740)
T TIGR00864      1796 FFAADSSVCFQGELATGTNVSWCWAIDGG-SSK-----MG-------KHA---CMTFPDAGTFAIRLNASNAVSGKSASR 1859 (2740)
T ss_pred             ceecCcEEEEEEEccCCCeeEEEEEeCCC-Ccc-----cc-------cee---EEecCCCeEEEEEEEEEcccCcceeee
Confidence            4556777877777444     55655311 100     01       111   14566789997655  57777777777


Q ss_pred             EEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCcc-CCC
Q psy3045          99 VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP-VPD  177 (267)
Q Consensus        99 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~-~~~  177 (267)
                      .+.|.++..-..              |.              .....+..|+.++|.+.....+...+.|..++.. ...
T Consensus      1860 ~~~VQe~I~~L~--------------L~--------------as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~ 1911 (2740)
T TIGR00864      1860 EFFAEEPIFGLE--------------LK--------------ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL 1911 (2740)
T ss_pred             eEEEEEecceEE--------------Ee--------------cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee
Confidence            777776432111              00              1111566799999999887777788999886533 211


Q ss_pred             CCCCeEEeccCCCCCCeEEE--EEEEcCCCCceEEEEEEEecccCCCeeecCCcee-EEecCCcEEEEEEeecCCCCcEE
Q psy3045         178 HNEPVFRIDSVRKEDKGMYQ--CVIRNEQESAQASGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEIS  254 (267)
Q Consensus       178 ~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~~i~  254 (267)
                      ..+..+. +  .-...|.|.  -.+.|..+..+....+.|...  -.-+.+..... .+..|+...|.-.++..-+..+.
T Consensus      1912 t~~~t~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~--V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~ 1986 (2740)
T TIGR00864      1912 QPGPRFS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA--VRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFA 1986 (2740)
T ss_pred             cCCCeEE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEe--ccceEecCCcccceecCceEEEEEEEecCCceEEE
Confidence            1122211 1  222345565  456788877777776666432  12233322211 25778999999888766667899


Q ss_pred             EEEC
Q psy3045         255 WYLD  258 (267)
Q Consensus       255 W~~~  258 (267)
                      |+++
T Consensus      1987 W~f~ 1990 (2740)
T TIGR00864      1987 WTFD 1990 (2740)
T ss_pred             EEee
Confidence            9866

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03042 CD47-like protein; Provisional

Probab=95.34  E-value=0.11  Score=39.32  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             EecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          26 KKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      .-.-++++.+.|.+..          +.|..++.....      .+..  ..++|.+.. ...-.|+|+|++.+-.....
T Consensus        27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~------~n~t--n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk   97 (286)
T PHA03042         27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK------KNNT--NTSSLKFNF-SKNLSGNYTCEAINKFNKIK   97 (286)
T ss_pred             EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE------ecCC--cceEEEEec-cccCCCceeEEEeecccCcc
Confidence            3456899999999988          899886332211      1111  113555543 34458999999986554433


Q ss_pred             EEEEEE
Q psy3045          96 VETVLT  101 (267)
Q Consensus        96 ~~~~l~  101 (267)
                      ....|.
T Consensus        98 ~~IeLk  103 (286)
T PHA03042         98 NTIELQ  103 (286)
T ss_pred             EEEEEE
Confidence            444443

>PHA03282 envelope glycoprotein E; Provisional

Probab=95.12  E-value=1.6  Score=36.02  Aligned_cols=46  Identities=33%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc--cEEEEEEEEE
Q psy3045          58 PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG--ESVETVLTVT  103 (267)
Q Consensus        58 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~  103 (267)
                      -...|+...|.+|.|.+++.+|+|.|+-.+......  ....+.|.|.
T Consensus       114 ~~~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        114 AWPPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             ccCcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            346777778899999999999999999987533222  2333445554

>KOG4597|consensus

Probab=95.09  E-value=0.056  Score=43.96  Aligned_cols=82  Identities=13%  Similarity=0.097  Sum_probs=57.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecc-cCc-ceecccc-CCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFI-EGS-SRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~-~~~-~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      ....+..|++..++|.+.|     |.|.+.- +.. .....-. ...-.......|.|-+....|+|.|+|.+.+..|..
T Consensus       204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL  283 (560)
T ss_pred             chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence            5678999999999999998     9998741 111 1111111 111122344679999999999999999999999987


Q ss_pred             EEEEEEEEEe
Q psy3045          95 SVETVLTVTA  104 (267)
Q Consensus        95 ~~~~~l~V~~  104 (267)
                      ...+.+.+..
T Consensus       284 ~rdv~c~s~~  293 (560)
T KOG4597|consen  284 RRDVPCSSVK  293 (560)
T ss_pred             eccceeeeec
Confidence            7777766653

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.79  E-value=0.13  Score=40.52  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=23.6

Q ss_pred             cccccCCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeec
Q psy3045           7 KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKF   47 (267)
Q Consensus         7 ~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~   47 (267)
                      .+...+||......  +   -..+ .++|.|.+.+       +.|.++
T Consensus       197 ~L~R~vpP~V~Vt~--k---~~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        197 NIPKPVTPTVKVTG--E---ELGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             ccCCCCCCceEEec--c---cCCC-CceEEEEEEeEeCCccEEEEEec
Confidence            34456677666543  1   1123 6899999999       899997

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.43  E-value=0.079  Score=39.83  Aligned_cols=42  Identities=19%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             CceEEEEE-CCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         163 VKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       163 ~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .|.+.|.. +|+.+...      .++.|.+.+...+++|.|+|..+...
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            57899986 44555433      45789999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG0613|consensus

Probab=94.40  E-value=0.43  Score=44.04  Aligned_cols=180  Identities=12%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccc-cCCceEEEe
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG-VEPTVQTID  147 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~~~  147 (267)
                      +..+.+....+.+.|+|...+..+.....+.-.+..............           .+...+..... .........
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~-----------aaa~~~~~~v~~~~~~~v~a~  347 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQA-----------AAARPPEVPVGLVRNLSVTAR  347 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhh-----------hccCCccccccccccceeccc
Confidence            567777788888999999988877765544433332111100000000           00000001111 111222445


Q ss_pred             cCCCEEEEeEeCCCCCce-EEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         148 FGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .+..+.+.|...+.+.++ +.|+++......+           ....+.+..+...+.+.|.|.|.|..+.........+
T Consensus       348 d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~v  427 (1205)
T KOG0613|consen  348 DNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTV  427 (1205)
T ss_pred             cCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhc
Confidence            567799999999887664 9999976544322           2356777888888999999999998876554332223


Q ss_pred             ecc---cCCCeeecCCce-eEEecCCcEEEEEEeecCCCC--cEEEEECC
Q psy3045         216 GGR---FDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTP--EISWYLDG  259 (267)
Q Consensus       216 ~~~---~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~  259 (267)
                      ...   ..++.+.....- ..+..-+.+.+.|...+++.+  .++|++++
T Consensus       428 s~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~  477 (1205)
T KOG0613|consen  428 SEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG  477 (1205)
T ss_pred             ccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCC
Confidence            211   122333322111 122233778888988877755  56666655

>KOG4597|consensus

Probab=93.53  E-value=0.13  Score=41.94  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEE---CCccCCC-----------CCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMK---DGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~---~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+....+..+++..++|-+.|.+.+.|+|.+   |+..+..           .+...|.|-+....|+|-|+|.+.+..+
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            3455578889999999999999999999975   4433211           1235688888999999999999999988


Q ss_pred             CceEEEEEEEe
Q psy3045         206 SAQASGELKLG  216 (267)
Q Consensus       206 ~~~~~~~l~v~  216 (267)
                      ...+.+.+.+.
T Consensus       282 ~~~rdv~c~s~  292 (560)
T KOG4597|consen  282 FLRRDVPCSSV  292 (560)
T ss_pred             eeeccceeeee
Confidence            77666666553

>KOG1480|consensus

Probab=93.32  E-value=0.063  Score=46.43  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=51.8

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~   95 (267)
                      .-..|..+..+.|.|+...      +.|+++......     ..+-.......+.+..+...|.|+|+|.+.|-.+. ..
T Consensus       137 ~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-----d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  137 VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-----DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             hhheecccccccccccCcccchhhhhhccccCCCCCc-----cccchhhhcCCccccchhhhhcccceeeeehhhccccc
Confidence            3457788899999998776      999996432211     12222234457999999999999999999987655 23


Q ss_pred             EEEEEEEE
Q psy3045          96 VETVLTVT  103 (267)
Q Consensus        96 ~~~~l~V~  103 (267)
                      ..+.+.+.
T Consensus       212 ~~~~v~vy  219 (909)
T KOG1480|consen  212 DPATVQVY  219 (909)
T ss_pred             cceEEEEE
Confidence            33344443

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=92.91  E-value=1.5  Score=32.27  Aligned_cols=89  Identities=16%  Similarity=0.364  Sum_probs=48.2

Q ss_pred             eEEEEECCccCCCC---------------CCCeEEe-ccCCCCCCeEEEEEEEcCCCCce-EEEEEEEec-ccCCCeeec
Q psy3045         165 TISWMKDGKPVPDH---------------NEPVFRI-DSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGG-RFDPPVIKE  226 (267)
Q Consensus       165 ~~~W~~~~~~~~~~---------------~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~-~~~~p~~~~  226 (267)
                      .+.|+.||.++...               ..++|++ ........-..+|.+...-.... +++...+.. .+.+|.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            67788777766422               1134555 22334445689999987544332 222222211 123444443


Q ss_pred             CCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEE
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKK  261 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~  261 (267)
                           .+..|   ...|.+...|.  ..+.|+-++..
T Consensus        88 -----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~  116 (211)
T PF02124_consen   88 -----RFEDG---YAVCTARCVPRGNVTLRWSVGDDP  116 (211)
T ss_pred             -----EecCC---EEEEEcceeeCCCeEEEEEECCcc
Confidence                 23223   34599988774  48999987754

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03283 envelope glycoprotein E; Provisional

Probab=92.65  E-value=5.5  Score=33.53  Aligned_cols=37  Identities=22%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +.|.|.+++.+++|.|+-...+..+.....+.|.|..
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~  170 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK  170 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence            4799999999999999999987666444455566654

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.99  E-value=0.54  Score=37.18  Aligned_cols=21  Identities=14%  Similarity=0.645  Sum_probs=17.7

Q ss_pred             CEEEEeEeCCC-C-CceEEEEEC
Q psy3045         151 PAQFTCKYEGN-P-VKTISWMKD  171 (267)
Q Consensus       151 ~v~l~C~~~~~-p-~~~~~W~~~  171 (267)
                      .++|+|.+.|+ | ...+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999997 4 458899999

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.08  E-value=0.49  Score=39.35  Aligned_cols=43  Identities=33%  Similarity=0.359  Sum_probs=0.0

Q ss_pred             eEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEEe
Q psy3045          62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTA  104 (267)
Q Consensus        62 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~  104 (267)
                      ++..+.+.|.|.+++.+|+|.|+-...+..+. ....+.|.|..
T Consensus        83 ~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   83 RLTFNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             --------------------------------------------
T ss_pred             ceeecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            33445578999999999999999999876655 34445566654

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.75  E-value=1.4  Score=27.02  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=25.7

Q ss_pred             CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         163 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      .+.+.|.-.+.... .............+|+|.+.|.|.
T Consensus        26 ~~~~~l~~~~~k~~-~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKSL-ETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEEE-EESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCcccc-ccceEEEEecCCCCCCEEEEEEEc
Confidence            44666765554431 234556667788899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=90.71  E-value=0.51  Score=35.69  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          42 NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        42 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      +.|...+. .    .+....++.. ..+.|.+.+...+++|.|+|.+.+..
T Consensus        15 y~W~GP~g-~----~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   15 YLWTGPNG-K----PLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             eEEECCCC-c----ccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            78986422 1    2233444444 35689999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03052 Hypothetical protein; Provisional

Probab=90.64  E-value=0.92  Score=26.36  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             EEEecCCCEEEEeEeCCC---CCceEEEEECCccC
Q psy3045         144 QTIDFGRPAQFTCKYEGN---PVKTISWMKDGKPV  175 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~~~  175 (267)
                      ..+..|..++|.|.+.-.   ..+.+.|.-|+..+
T Consensus         7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            367789999999998632   35688899998877

>PHA03052 Hypothetical protein; Provisional

Probab=90.60  E-value=1.1  Score=26.07  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             ceeEEecCCcEEEEEEee-cC--CCCcEEEEECCEEcC
Q psy3045         229 SDETLNPGPNYYFKCIAS-GN--PTPEISWYLDGKKLV  263 (267)
Q Consensus       229 ~~~~~~~g~~~~l~C~~~-~~--p~~~i~W~~~~~~l~  263 (267)
                      ....+..|..++|.|.+. |.  ..+.+.|.-||.-+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            445678899999999996 33  335799999998874

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=89.88  E-value=3.1  Score=26.24  Aligned_cols=68  Identities=12%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             eEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045          32 SFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV   99 (267)
Q Consensus        32 ~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   99 (267)
                      .+.-.|...+      +.|.-+.+|.................+.+.+-.....|.-..+|.+.+....-...+.
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~   95 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT   95 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence            3456898655      9998765555433333333334444456666667777788999999886443333333

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=88.99  E-value=1.7  Score=28.04  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .+.+|.|..++..|+|.|.-++++..|..
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKV   97 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcE
Confidence            45789999999999999999999988775

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=88.11  E-value=3  Score=26.12  Aligned_cols=58  Identities=14%  Similarity=0.416  Sum_probs=36.1

Q ss_pred             EEecCCCEEEEeEeCCC-----CCceEEEEECCccCCCCC-------CCeEEeccCCCCCCeEEEEEEEc
Q psy3045         145 TIDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+..|+.+++.|.....     ....+.|..|+..++...       .+.+++.+......-.|-|....
T Consensus        14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~   83 (89)
T PF06328_consen   14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW   83 (89)
T ss_dssp             EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred             EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence            67789999999987532     355899999998776532       24555655554444566666443

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=87.99  E-value=4.7  Score=25.13  Aligned_cols=54  Identities=15%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             CEEEEeEeCCCCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         151 PAQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ...|.+.+.+. ...+.|+.||..+.. .....+.+.   ....|.|+-.+....|...
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~---~~~~G~h~l~vvD~~G~~~   85 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQ---PDRPGEHTLTVVDAQGRSA   85 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeC---CCCCeeEEEEEEcCCCCEE
Confidence            45555565555 348999999999833 233444333   3567999999988777644

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03189 UL14 tegument protein; Provisional

Probab=87.66  E-value=4.9  Score=31.24  Aligned_cols=19  Identities=16%  Similarity=0.321  Sum_probs=16.7

Q ss_pred             eeEEecCCCeEEEEEEecc
Q psy3045          23 IRFKKPGGESFALLCEAQE   41 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~   41 (267)
                      ....+..|+.+++.|.+..
T Consensus        60 AP~l~pyGdrvtVpC~fp~   78 (348)
T PHA03189         60 APLLVPYGDRVTVPCTFPT   78 (348)
T ss_pred             CccccCCCceeeeeeeecC
Confidence            4567889999999999988

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=86.38  E-value=3.3  Score=25.97  Aligned_cols=62  Identities=8%  Similarity=0.096  Sum_probs=33.9

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ++..+..|++++..|.+..          +.|..+.......+.    ..+....+++++.+.....+-.|-|...
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy----~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQY----RVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCE----EEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHc----ceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            4557889999999999876          778764221111111    1111122567777776666667777753

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03286 envelope glycoprotein E; Provisional

Probab=84.79  E-value=22  Score=29.62  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=28.6

Q ss_pred             eEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEEE
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVT  103 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~  103 (267)
                      ..|.|.+.+.+++|.|+-...++.+.. ...+.+.|.
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~  163 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS  163 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence            579999999999999999998877664 445556664

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=84.22  E-value=8.1  Score=24.31  Aligned_cols=76  Identities=18%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE---EeeEEEEeecccCCCeeEEEEE
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ---VSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +.+.|  +...|..|+++.+.|...=     +-|.-           .+......   .-..+.+.+++. | ..-.|.+
T Consensus         6 v~v~P--~~~vV~~G~Sv~VNCStsC~~p~~~GLET-----------~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~   70 (91)
T PF03921_consen    6 VRVSP--EEPVVPPGGSVWVNCSTSCPQPEKIGLET-----------SLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFF   70 (91)
T ss_dssp             EEEES--SEEEEETTEEEEEEEEESSSS-SEEEEES-----------SSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEE
T ss_pred             EEEEC--CccEECCCCCEEEEEcCCCCCCCcceEEE-----------ecCCcccCCCCcEEEEEEEcccc-C-CeEEEEE
Confidence            33444  7889999999999999753     22211           11111111   123677888886 4 4678999


Q ss_pred             EcCCCccEEEEEEEEEecc
Q psy3045          88 NNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~~~~  106 (267)
                      .-..........|+|+.+|
T Consensus        71 ~C~g~Q~~~~~~ItVY~~P   89 (91)
T PF03921_consen   71 NCSGEQSSASANITVYKPP   89 (91)
T ss_dssp             EETTEEEEEEEEEEEEB--
T ss_pred             EcCCeEEEeEEeeEEeCCC
Confidence            8654345677777777654

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=83.20  E-value=7.9  Score=24.11  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             cEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         238 NYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       238 ~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      ...|...+.+. ...+.||.||+.+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~   54 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPL   54 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEc
Confidence            45566666655 4599999999998

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=81.40  E-value=39  Score=30.08  Aligned_cols=113  Identities=20%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEE-E-EECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEc--CCCC----ceEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTIS-W-MKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRN--EQES----AQASGEL  213 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~-W-~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~--~~~~----~~~~~~l  213 (267)
                      ....|+.+.+.+.+.+.....+. | .++|..+...   ....+.   ..+..+|.|+-.+.-  ....    ......+
T Consensus       397 ~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l  473 (667)
T PRK14081        397 HILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVN---FIPEEKGNYELEVRVKDKYSDKEYDAHTIVYI  473 (667)
T ss_pred             ceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEE---EEECCCeeEEEEEEEecccCchhcccceEEEE
Confidence            45569999999999877544333 3 3467655432   223333   345788999987653  2221    2223444


Q ss_pred             EEecccCCCe-ee--cCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEc
Q psy3045         214 KLGGRFDPPV-IK--ESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKL  262 (267)
Q Consensus       214 ~v~~~~~~p~-~~--~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l  262 (267)
                      .|..  ..|. +.  ..+.......|+.++++|.+++.-..  .+.-+.||..+
T Consensus       474 ~V~e--~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v  525 (667)
T PRK14081        474 KVHE--YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKV  525 (667)
T ss_pred             EEec--cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEE
Confidence            4432  3453 33  22333456789999999999876555  44445677655

>PHA03112 IL-18 binding protein; Provisional

Probab=81.29  E-value=11  Score=25.78  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=38.8

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCc--ceeccccCCceEE----------EEeeEEEEeecccC-CCeeEEE
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGS--SRKVAVPLNDRVK----------QVSGTLIIKEAKVE-DSGKYLC   85 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~--~~~~~~~~~~~~~----------~~~~~l~i~~~~~~-d~G~Y~C   85 (267)
                      ...+|+++.|+|...+       +.|..++.+.  .......+.++.+          .....|.+.+++.. ..-..+|
T Consensus        34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC  113 (141)
T PHA03112         34 PTKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC  113 (141)
T ss_pred             ccCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence            4567999999999886       8899754221  1111112222222          12245666777654 2337888


Q ss_pred             EEEcCCC
Q psy3045          86 VVNNSVG   92 (267)
Q Consensus        86 ~~~~~~~   92 (267)
                      ......+
T Consensus       114 VL~D~~~  120 (141)
T PHA03112        114 VLMDLDG  120 (141)
T ss_pred             EEecCCc
Confidence            8866544

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.29  E-value=10  Score=23.24  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             EEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          63 VKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        63 ~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      .......+.....+..|+|...|.|.
T Consensus        38 ~~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   38 SLETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ccccceEEEEecCCCCCCEEEEEEEc
Confidence            33445566777788899999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-83
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		5e-59
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		4e-58
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-58
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		3e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		6e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		6e-12
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-11
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		8e-11
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		8e-11
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-09
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-09
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		4e-09
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		5e-09
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-08
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-08
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		4e-08
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		7e-08
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-07
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-07
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		4e-07
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		5e-07
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		6e-07
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		6e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		8e-07
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-06
2ec8_A	524	Crystal Structure Of The Exctracellular Domain Of T		1e-06
2e9w_A	489	Crystal Structure Of The Extracellular Domain Of Ki		1e-06
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-06
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-06
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		6e-06
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-06
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-06
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		9e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		8e-06
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		1e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-05
3s97_C	201	Ptprz Cntn1 Complex Length = 201		3e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		4e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		4e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		4e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		5e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		6e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		6e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-04
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		1e-04
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		2e-04
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		2e-04
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		4e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		4e-04
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		5e-04
3r4d_A	208	Crystal Structure Of Mouse Coronavirus Receptor-Bin		5e-04
1l6z_A	216	Crystal Structure Of Murine Ceacam1a[1,4]: A Corona		5e-04
2o26_X	290	Structure Of A Class Iii Rtk Signaling Assembly Len		7e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		8e-04
3bfo_A	91	Crystal Structure Of Ig-Like C2-Type 2 Domain Of Th		8e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		8e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/266 (57%), Positives = 187/266 (70%), Gaps = 35/266 (13%)
Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
           +P+    P   S++        G  + ALLC AQ        W+KFIEG++RK AV LND
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAPL+A ++P  QT+DFGR
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
           PA FT                             C+Y GNP+KT+SWMKDGK +  H+E 
Sbjct: 360 PAVFT-----------------------------CQYTGNPIKTVSWMKDGKAI-GHSES 389
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN++ESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKGMY 196
           + I  G     TC   G P+ +I W +D + +P +  + VF      I++V R  D+  Y
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595
Query: 197 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISW 255
            CV +N QE   A G L++     P +I  +F +     G      C   G   P  I W
Sbjct: 596 TCVAKN-QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDW 654
Query: 256 YLDGKKL 262
            LDG+ +
Sbjct: 655 TLDGQAI 661

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 137/190 (72%), Gaps = 35/190 (18%)
Query: 32  SFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
           S++LLC AQ        W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYLCV
Sbjct: 232 SYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 291
Query: 87  VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
           VNNSVGGESVETVLTVTAPL+A ++P  QT+DFGRPA F                     
Sbjct: 292 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF--------------------- 330
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
                   TC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ES
Sbjct: 331 --------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRES 381
Query: 207 AQASGELKLG 216
           A+AS ELKLG
Sbjct: 382 AEASAELKLG 391

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 55/223 (24%)
Query: 67  SGTLIIKEAKVEDSGK-YLCVVNNSVGGES----VETVLTVTAPLAAGVEPTVQTIDFGR 121
           SG L I+E   ED  K Y C   + + GE+     +  L +T P+ + V P V   D   
Sbjct: 165 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGS-VRPKVNPQD--- 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
             QF                    ++        C  +  P  +  W K  +G       
Sbjct: 221 KHQFI------------------DVELASSYSLLCMAQSYPTPSFRWYKFIEGTT---RK 259
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
           + V   D V++            ED G Y CV+ N          L     L  + DPP 
Sbjct: 260 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 319
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
                  +T++ G    F C  +GNP   +SW  DGK + ++E
Sbjct: 320 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 355

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 35/192 (18%)
Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             + +LLC AQ        W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 233 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 292
Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           CVVNNSVGGESVETVLTVTAPL+A ++P  QT+DFGRPA F                   
Sbjct: 293 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF------------------- 333
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
                     TC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++
Sbjct: 334 ----------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDR 382
Query: 205 ESAQASGELKLG 216
           ESA+AS ELKLG
Sbjct: 383 ESAEASAELKLG 394

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 84/223 (37%), Gaps = 56/223 (25%)
Query: 67  SGTLIIKEAKVEDSGK-YLCVVNNSVGGES----VETVLTVTAPLAAGVEPTVQTIDFGR 121
           SG L I+E   ED  K Y C   + + GE+     +  L +T P+++    T        
Sbjct: 169 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT-------- 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
           PA       +  PL   V  T+  +         C  +G P  +  W K  +G       
Sbjct: 221 PAL------VQKPLELMVAHTISLL---------CPAQGFPAPSFRWYKFIEGT---TRK 262
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
           + V   D V++            ED G Y CV+ N          L     L  + DPP 
Sbjct: 263 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 322
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
                  +T++ G    F C  +GNP   +SW  DGK + ++E
Sbjct: 323 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 35/192 (18%)
Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             + +LLC AQ        W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           CVVNNSVGGESVETVLTVTAPL+A ++P  QT+DFGRPA F                   
Sbjct: 287 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF------------------- 327
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
                     TC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++
Sbjct: 328 ----------TCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDR 376
Query: 205 ESAQASGELKLG 216
           ESA+AS ELKLG
Sbjct: 377 ESAEASAELKLG 388

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 82/223 (36%), Gaps = 56/223 (25%)
Query: 67  SGTLIIKEAKVEDSGK-YLCVVNNSVGGESVETV----LTVTAPLAAGVEPTVQTIDFGR 121
           SG L I+E   ED  K Y C   + + GE+  +     L +T P+++    T   +   +
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ--K 220
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHN 179
           P +    + IS                       C  +G P  +  W K  +G       
Sbjct: 221 PLELMVAHTIS---------------------LLCPAQGFPAPSFRWYKFIEGT---TRK 256
Query: 180 EPVFRIDSVRK------------EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPV 223
           + V   D V++            ED G Y CV+ N          L     L  + DPP 
Sbjct: 257 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 316
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
                  +T++ G    F C  +GNP   +SW  DGK + ++E
Sbjct: 317 -------QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           V Q +G L I + +  D G Y CVV N+V       VL    PL    +        G  
Sbjct: 151 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK---VLGPPTPLILRND--------GVM 199
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVP----- 176
            ++  K E+  P     E        G   +  C   GNPV TI W + DGKP+      
Sbjct: 200 GEYEPKIEVQFPETVPAEK-------GTTVKLECFALGNPVPTILWRRADGKPIARKARR 252
Query: 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 236
             +  +  I + ++ED G Y+CV  N +    A G+L     +  P   +  +D  +   
Sbjct: 253 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAME 309
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            + +++C A+G P P   W  +G  L+  +R
Sbjct: 310 ESVFWECKANGRPKPTYRWLKNGDPLLTRDR 340

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           V Q +G L I + +  D G Y CVV N+V       VL    PL    +        G  
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK---VLGPPTPLILRND--------GVM 200
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVP----- 176
            ++  K E+  P     E        G   +  C   GNPV TI W + DGKP+      
Sbjct: 201 GEYEPKIEVQFPETVPAEK-------GTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 236
             +  +  I + ++ED G Y+CV  N +    A G+L     +  P   +  +D  +   
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAME 310
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            + +++C A+G P P   W  +G  L+  +R
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDR 341

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 25/216 (11%)
Query: 57  VPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
           +P + R  V Q +G L I      D G Y C+  + +   S ++V +  A L    E T 
Sbjct: 144 IPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDF-STKSVFSKFAQLNLAAEDT- 201
Query: 115 QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGK 173
                           +  P      P       G+     C   GNPV  I W K DG 
Sbjct: 202 ---------------RLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Query: 174 PVPDHN--EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE 231
             P     EP  +I SV  ED+G Y+C   N +      G + +  +   P   +  SD 
Sbjct: 247 LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ---PEWLKVISDT 303
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             + G N  + C A+G P P + W  +G+ L +  R
Sbjct: 304 EADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNR 339

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 25/216 (11%)
Query: 57  VPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
           +P + R  V Q +G L I + +  D G Y C   + +   + ++V +  + L+   E   
Sbjct: 145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT-KSVFSKFSQLSLAAEDAR 203
Query: 115 QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGK 173
           Q                +P + A        +  G+     C   GNPV  I W K DG 
Sbjct: 204 Q---------------YAPSIKAKFPADTYALT-GQMVTLECFAFGNPVPQIKWRKLDGS 247
Query: 174 PVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE 231
                  +EP+  I +V  ED+G Y+C   N +      G + +  +   P   +  +D 
Sbjct: 248 QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ---PDWLDVITDT 304
Query: 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             + G +  + C+ASG P P + W  DG+ L +  R
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 42/247 (17%)
Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GE   L C+          W+K  E +  + A     + K    +L+I +    D G+Y 
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   NSVG  +   VL +                         + ++ P  A  ++   +
Sbjct: 78  CKAENSVGAVASSAVLVIK------------------------ERKLPPSFARKLKDVHE 113
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGM 195
           T+ F  P  F C+  G+    +SW KDG+ + D         HN    +I    +   G 
Sbjct: 114 TLGF--PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           Y C   N   +A +S +L L     PP          L  G +  FKC  +G    +I+W
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 256 YLDGKKL 262
             D +++
Sbjct: 232 AKDNREI 238

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
           +E  +  +   +  +F C   G P  T+ W+K+GK   PDH    +++         DSV
Sbjct: 22  MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 81
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y C++ NE  S   + +L +  R    P+++    +++T+  G N  F C   
Sbjct: 82  VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 141
Query: 247 GNPTPEISW 255
            +P P I W
Sbjct: 142 SDPQPHIQW 150

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
           +E  +  +   +  +F C   G P  T+ W+K+GK   PDH    +++         DSV
Sbjct: 21  MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y C++ NE  S   + +L +  R    P+++    +++T+  G N  F C   
Sbjct: 81  VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 247 GNPTPEISW 255
            +P P I W
Sbjct: 141 SDPQPHIQW 149

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSV 188
           +E  +  +   +  +F C   G P  T+ W+K+GK   PDH    +++         DSV
Sbjct: 21  MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y C++ NE  S   + +L +  R    P+++    +++T+  G N  F C   
Sbjct: 81  VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 247 GNPTPEISW 255
            +P P I W
Sbjct: 141 SDPQPHIQW 149

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 100/265 (37%), Gaps = 60/265 (22%)
Query: 10  GFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK 64
           G  APT S ++   R     GE+  L C A  N      WF             +N   +
Sbjct: 202 GPDAPTISPLNTSYR----SGENLNLSCHAASNPPAQYSWF-------------VNGTFQ 244
Query: 65  QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
           Q +  L I    V +SG Y C  +NS  G +  TV T+T   A   +P + T +   P  
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV-YAEPPKPFI-TSNNSNPV- 301
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------D 177
                E    +A   EP +Q                    T  W  + + +P        
Sbjct: 302 -----EDEDAVALTCEPEIQN------------------TTYLWWVNNQSLPVSPRLQLS 338
Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP--PVIKESFSDETLNP 235
           ++     + SV + D G Y+C I+NE  S   S  + L   + P  P I  S++     P
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYT--YYRP 395
Query: 236 GPNYYFKCIASGNPTPEISWYLDGK 260
           G N    C A+ NP  + SW +DG 
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGN 420

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 46/254 (18%)
Query: 30  GESFALLCEA------QENMWF----KFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           GES   LC+       ++  WF    + +  + ++++V  ND     S TL I  A ++D
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80  SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           +G Y CVV    G +S  TV + +   L     PT Q    G  A   C    S P    
Sbjct: 74  AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP---- 129
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
             PT+             K++G   + +   KD + +   N    +I  ++K D+G Y+C
Sbjct: 130 --PTI-----------IWKHKG---RDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRC 172
Query: 199 VIRNEQESAQASGELKLGG----RFDPPVI--KESFSDETLNPGPNYYFKCIASGNPTPE 252
             R       A GE+           PP +  ++S  + T N G +    C A G P P 
Sbjct: 173 EGR-----ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 253 ISWYLDGKKLVNAE 266
           +SW  DG+ + N E
Sbjct: 228 MSWTKDGEPIENEE 241

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR- 189
           P  QT   G  A F C+  G P   I+WMK GK V           D    V RI  +R 
Sbjct: 14  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRV 73
Query: 190 KEDKGMYQCVIRNEQESAQASGEL------KLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
           + D+ +Y+C   N       S +L      +L   F  P I      + +  G      C
Sbjct: 74  QRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGF--PTIDMGPQLKVVEKGRTATMLC 131
Query: 244 IASGNPTPEISWYLD 258
            A GNP PEISW+ D
Sbjct: 132 AAGGNPDPEISWFKD 146

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 40/223 (17%)
Query: 48  IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLA 107
           I G SR V +P        SG L I   +  DSG Y C   N              A   
Sbjct: 165 IPGDSRVVVLP--------SGALQISRLQPGDSGVYRCSARN-------------PASTR 203
Query: 108 AGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS 167
            G E  V+ +    P      Y +  P        V  I+ G+ A   C   G P  + +
Sbjct: 204 TGNEAEVRILS--DPGLHRQLYFLQRP------SNVIAIE-GKDAVLECCVSGYPPPSFT 254
Query: 168 WMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 220
           W++  + +   ++           I +V  +D G Y CV+  + E+  AS EL +     
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV---LV 311
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
           PP      S+       +  F+C  SG P P ++W  +G  ++
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK---DGKP 174
           D G     T K  ++ PL    +    T   G      C+  G+P+ TI W K   D  P
Sbjct: 105 DSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP 164
Query: 175 VPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
           +P  +  V       +I  ++  D G+Y+C  RN   S +   E ++    DP + ++ +
Sbjct: 165 IPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP-ASTRTGNEAEVRILSDPGLHRQLY 223
Query: 229 -----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
                S+     G +   +C  SG P P  +W L G++++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW-LRGEEVI 262

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 84/224 (37%), Gaps = 63/224 (28%)
Query: 66  VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
           V   L I  A +ED+G Y C   ++ G     TV          V    Q + F      
Sbjct: 58  VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV----------VLEIYQKLTF------ 101
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI 185
             +  +SP          Q    G  A+  C+   +P   +SW+        HNE V  I
Sbjct: 102 --REVVSP----------QEFKQGEDAEVVCRVSSSPAPAVSWLY-------HNEEVTTI 142
Query: 186 DSVR---------------KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVI-- 224
              R               K D+G+Y+C  R E     A GE+           PP I  
Sbjct: 143 SDNRFAMLANNNLQILNINKSDEGIYRCEGRVE-----ARGEIDFRDIIVIVNVPPAISM 197
Query: 225 -KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            ++SF + T   G    F C ASG+P P ISW+ +GK +   E+
Sbjct: 198 PQKSF-NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 240

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 72/205 (35%), Gaps = 54/205 (26%)
Query: 79  DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           D   Y CV  NSVG  +V   LTV                  R  Q    +   P +  G
Sbjct: 75  DENVYECVAQNSVGEITVHAKLTVL-----------------REDQLPSGF---PNIDMG 114
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
             P ++ ++  R A   C   GNP   I+W KD  PV                 +I+S  
Sbjct: 115 --PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV--------IKESFS----DETLNPGP 237
           + D+G Y+CV  N             G R+  P         +   FS       + PG 
Sbjct: 173 ETDQGKYECVATN-----------SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG 221
Query: 238 NYYFKCIASGNPTPEISWYLDGKKL 262
           N    C+A G+P P + W    + L
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDL 246

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR- 189
           P  QT   G  A F C+  G P   I+WMK GK V           D    V RI  +R 
Sbjct: 13  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRV 72
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL--GGRFDP--PVIKESFSDETLNPGPNYYFKCIA 245
           + D+ +Y+C   N       S +L +    +  P  P I      + +         C A
Sbjct: 73  QRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAA 132
Query: 246 SGNPTPEISWYLD 258
            GNP PEISW+ D
Sbjct: 133 GGNPDPEISWFKD 145

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGM 195
           T   G  AQ +C+  G P+  I W + GK +          D       + +  +ED+G+
Sbjct: 18  TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77
Query: 196 YQCVIRNEQESAQASGELKLGG--RFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPE 252
           Y C+  NE    + S +L L    +F P   +KE +       G       +  G P P 
Sbjct: 78  YTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV---GSTLRLHVMYIGRPVPA 134
Query: 253 ISWYLDGKKLVNAE 266
           ++W+   K L N+E
Sbjct: 135 MTWFHGQKLLQNSE 148

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           + TL + +    D+G+Y C  +N  G +S    L V AP                     
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAP--------------------- 98
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE------ 180
                 P     +EP+ + +      ++ CK  G+P   + W KD   + + ++      
Sbjct: 99  ------PRFIKKLEPS-RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-KESFSDETLNPG 236
               V  + ++  ED G Y C   N   SA +S  LK+    +PPV  K+    ETL  G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK-G 207
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            + + +C   G P  ++SW+ D ++L + ++
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKK 238

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQ 197
           G  A F     G PV  +SW +DG+ +     P  +I            +V K + G Y 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
               N    A ++ EL +     PP   +     T+  G     +   +G PTP + +Y 
Sbjct: 80  LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 258 DGKKL 262
           DG ++
Sbjct: 140 DGAEI 144

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRI 185
            P+   +  G PA   CK EG P  TI W K G+ V  D ++P               RI
Sbjct: 15  HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 186 DSVRKE--DKGMYQCVIRN---EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
              RK   D+G+Y CV RN   E  S  AS E+ +  R D    +++ SD  +  G    
Sbjct: 75  VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI-LRDD---FRQNPSDVMVAVGEPAV 130
Query: 241 FKCI-ASGNPTPEISWYLDGKKL 262
            +C    G+P P ISW  DG  L
Sbjct: 131 MECQPPRGHPEPTISWKKDGSPL 153

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQ 197
           G  A F     G PV  +SW +DG+ +     P  +I            +V K + G Y 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
               N    A ++ EL +     PP   +     T+  G     +   +G PTP + +Y 
Sbjct: 80  LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 258 DGKKL 262
           DG ++
Sbjct: 140 DGAEI 144

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           V P  + +  G+  +  C+  G+P     W K  K +P+ N      ++V  +D G Y C
Sbjct: 23  VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVC 82
Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESF------------------SDETLNPGPNYY 240
            + N       + E     + D   I ESF                  + + L PG    
Sbjct: 83  RVNNN-----FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 241 FKCIASGNPTPEISWY 256
            +C+A G+P P   W+
Sbjct: 138 LQCVAVGSPIPHYQWF 153

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQ 197
           Q +  G      C   G P   I+W K G  +P      ++     RI +V +ED G Y 
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYF 291
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
           C+  N+  S + +  +++      P   +   +  L PG +    C A+GNP P + W +
Sbjct: 292 CLASNKMGSIRHTISVRVKAA---PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 258 DGKKLVNA 265
           +G+ L +A
Sbjct: 349 NGEPLQSA 356

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK 190
           P  QT   G  A F C+  G+P   I W K GK V           D +  V RI  +R 
Sbjct: 13  PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 191 -EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE---TLNPGPNY------- 239
             D+ +Y+CV  N        GE+ +  R    V++E        T++ GP         
Sbjct: 73  PRDEAIYECVASNN------VGEISVSTRLT--VLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 240 --YFKCIASGNPTPEISWYLD 258
                C ASGNP PEI+W+ D
Sbjct: 125 TATMLCAASGNPDPEITWFKD 145

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSV 188
           +P  Q +  G  A F C   G+P  +I W K+GK V                 + RI+ V
Sbjct: 12  KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 189 RK-EDKGMYQCVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFK 242
           R   D   Y+CV  N   +  SA A+  +  G +     PVI +      +  G      
Sbjct: 72  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 131
Query: 243 CIASGNPTPEISWYLDGKKL 262
           C A GNPTP I W  +  K+
Sbjct: 132 CKAIGNPTPNIYWIKNQTKV 151

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSV 188
           +P  Q +  G  A F C   G+P  +I W K+GK V                 + RI+ V
Sbjct: 14  KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 73
Query: 189 RK-EDKGMYQCVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFK 242
           R   D   Y+CV  N   +  SA A+  +  G +     PVI +      +  G      
Sbjct: 74  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 133
Query: 243 CIASGNPTPEISWYLDGKKL 262
           C A GNPTP I W  +  K+
Sbjct: 134 CKAIGNPTPNIYWIKNQTKV 153

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 35/146 (23%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR-------------- 189
           Q    G  A+  C+   +P   +SW+        HNE V  I   R              
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLY-------HNEEVTTISDNRFAMLANNNLQILNI 64
Query: 190 -KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVI---KESFSDETLNPGPNYYF 241
            K D+G+Y+C  R      +A GE+           PP I   ++SF + T   G    F
Sbjct: 65  NKSDEGIYRCEGR-----VEARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMTF 118
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
            C ASG+P P ISW+ +GK +   E+
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEK 144

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           + TL + +    D+G+Y C  +N  G +S    L V  P                     
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--------------------- 98
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE------ 180
                 P     +EP+ + +      ++ CK  G+P   + W KD   + + ++      
Sbjct: 99  ------PRFIKKLEPS-RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 181 ---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-KESFSDETLNPG 236
               V  + ++  ED G Y C   N   SA +S  LK+    +PPV  K+    ETL  G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK-G 207
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            + + +C   G P  ++SW+ D ++L + ++
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKK 238

>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The Receptor Tyrosine Kinase, Kit Length = 524

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 10  GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLN--- 60
            FKA    SVS      + G E F + C  ++      + W +  E S  K+    N   
Sbjct: 207 AFKAVPVVSVSKASYLLREG-EEFTVTCTIKDVSSSVYSTWKR--ENSQTKLQEKYNSWH 263
Query: 61  --DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
             D   +   TL I  A+V DSG ++C  NN+ G  +V T L V       + P + T  
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV 323
Query: 119 F---GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
           F   G       +YE  P          Q I   R   FT K+E  P             
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQ-----QWIYMNR--TFTDKWEDYP------------- 363
Query: 176 PDHNEPVFR------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
              NE   R      +  ++  + G Y  ++ N   +A  +  + +  +  P ++     
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--PEIL----- 416
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYL 257
             T +   N   +C+A+G P P I WY 
Sbjct: 417 --TYDRLVNGMLQCVAAGFPEPTIDWYF 442

>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In Complex With Stem Cell Factor (Scf) Length = 489

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 10  GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLN--- 60
            FKA    SVS      + G E F + C  ++      + W +  E S  K+    N   
Sbjct: 182 AFKAVPVVSVSKASYLLREG-EEFTVTCTIKDVSSSVYSTWKR--ENSQTKLQEKYNSWH 238
Query: 61  --DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
             D   +   TL I  A+V DSG ++C  NN+ G  +V T L V       + P + T  
Sbjct: 239 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV 298
Query: 119 F---GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
           F   G       +YE  P          Q I   R   FT K+E  P             
Sbjct: 299 FVNDGENVDLIVEYEAFPKPEHQ-----QWIYMNR--TFTDKWEDYP------------- 338
Query: 176 PDHNEPVFR------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
              NE   R      +  ++  + G Y  ++ N   +A  +  + +  +  P ++     
Sbjct: 339 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--PEIL----- 391
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYL 257
             T +   N   +C+A+G P P I WY 
Sbjct: 392 --TYDRLVNGMLQCVAAGFPEPTIDWYF 417

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------D 186
            PT   +    PA   CK EG P  TI W KDG+PV  + +   R+              
Sbjct: 15  HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 187 SVRKEDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYF 241
             +++D G Y CV +N   ++      L++       V+++ F     D  +  G     
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALL 128
Query: 242 KC-IASGNPTPEISWYLDG 259
           +C    G P P + W  DG
Sbjct: 129 ECGPPKGIPEPTLIWIKDG 147

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------D 186
            PT   +    PA   CK EG P  TI W KDG+PV  + +   R+              
Sbjct: 15  HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 187 SVRKEDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYF 241
             +++D G Y CV +N   ++      L++       V+++ F     D  +  G     
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALL 128
Query: 242 KC-IASGNPTPEISWYLDG 259
           +C    G P P + W  DG
Sbjct: 129 ECGPPKGIPEPTLIWIKDG 147

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 153 QFTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRN 202
           +F C   GNP  +ISW+K+G+              H +    ++SV   D+G Y CV+ N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 203 EQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 255
           +  S + +  L +  R    P+++    +++T   G +  F C    +  P I W
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
           EP  Q    G  A F C+  G+P   ++W K GK V                V RI  +R
Sbjct: 12  EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 190 K-EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES-----FSDETLNPGPNYYFK- 242
              D+ +Y+CV +N      + GE+ +  +    V++E      F +  + P      + 
Sbjct: 72  TPRDENVYECVAQN------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 243 ------CIASGNPTPEISWYLD 258
                 C ASGNP PEI+W+ D
Sbjct: 124 RTATMLCAASGNPDPEITWFKD 145

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 37/169 (21%)
Query: 48  IEGSSRKVAVPLND---RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
           I  +  K+ + L D    +++    L I   +  D G Y C  NN VGG +VE+      
Sbjct: 39  ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGG-AVES----CG 93
Query: 105 PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK 164
            L   ++P +                  PP+       V+ I+ G  A   C   GNP  
Sbjct: 94  ALQVKMKPKIT----------------RPPI------NVKIIE-GLKAVLPCTTMGNPKP 130
Query: 165 TISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQESA 207
           ++SW+K    + +++          RI +V+KED G Y+CV +N   +A
Sbjct: 131 SVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 152 AQFTCKYEGNPVKTISWMK--------DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
           A F C  E  P   ISW +        D +     N  +  I SV   D G+Y C   N 
Sbjct: 25  ATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84
Query: 204 QESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
              A ++ G L++  +  P + +   + + +  G      C   GNP P +SW
Sbjct: 85  VGGAVESCGALQV--KMKPKITRPPINVKIIE-GLKAVLPCTTMGNPKPSVSW 134

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 153 QFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRN 202
           +F C   GNP  +ISW+K+G+              H +    ++SV   D+G Y CV+ N
Sbjct: 34  RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 203 EQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 255
           +  S + +  L +  R    P+++    +++T   G +  F C    +  P I W
Sbjct: 94  KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
           EP  Q    G  A F C+  G+P   ++W K GK V                V RI  +R
Sbjct: 12  EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 190 K-EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES-----FSDETLNPGPNYYFK- 242
              D+ +Y+CV +N      + GE+ +  +    V++E      F +  + P      + 
Sbjct: 72  TPRDENVYECVAQN------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 243 ------CIASGNPTPEISWYLD 258
                 C ASGNP PEI+W+ D
Sbjct: 124 RTATMLCAASGNPDPEITWFKD 145

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 39/134 (29%)
Query: 152 AQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVI 200
           A F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV 
Sbjct: 24  ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 201 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG-PNY---------------YFKCI 244
           +N        GE+ +  +    V++E    + L PG PN                   C 
Sbjct: 84  QNPH------GEVTVHAKLT--VLRE----DQLPPGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 245 ASGNPTPEISWYLD 258
           ASGNP PEI+W+ D
Sbjct: 132 ASGNPDPEITWFKD 145

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R+   P+++    ++ +   G +  F C   
Sbjct: 76  VPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 136 SDAQPHIQW 144

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQ 197
           T + G    F+C+  G+P   ISW ++GK + ++ + + +       + ++   D G Y 
Sbjct: 15  TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           C   N+    +    L++     P +I+    +ET          C A G P PEI+W
Sbjct: 75  CRATNKAGEDEKQAFLQV--FVQPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITW 128

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
           Q T    ++P +   +E   QT   G   + +C   GNP   I W KD + + + +  V 
Sbjct: 2   QLTVLERVAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 184 R-------IDSVRKEDKGMYQC 198
           +       I  VRKED+G+Y C
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTC 81

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 135 LAAGV--EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HN------EPVF 183
           LAA +  +P   T+  G  A+F+C  +G PV T++W++ G+ +     H       +  F
Sbjct: 13  LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
            I SV+  D+G Y  V+ N +   +A   L +
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 30  GESFALLCEAQ----ENMWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDSGKY 83
           G+   LLC+      +++ ++++  +   V + ++ R  V Q +G L I   +  D G Y
Sbjct: 23  GKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81
Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C V++       ++V +   PL    E T +        QF   Y +            
Sbjct: 82  SCFVSSP---SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL------------ 126
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQC 198
                G+     C   GNPV  I W K  +P+P   E      V +I +++ ED+G+Y+C
Sbjct: 127 ----MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 199 VIRN 202
              N
Sbjct: 183 EAEN 186

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 14  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 73
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 74  VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 133
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 134 SDAQPHIQW 142

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 15  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 74
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 75  VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 135 SDAQPHIQW 143

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 76  VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 136 SDAQPHIQW 144

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 76  VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 136 SDAQPHIQW 144

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 84  VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 144 SDAQPHIQW 152

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVR 189
            +P   T+  G  A+F+C  +G PV T++W++ G+ +     H       +  F I SV+
Sbjct: 13  TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 72
Query: 190 KEDKGMYQCVIRNEQESAQASGELKL 215
             D+G Y  V+ N +   +A   L +
Sbjct: 73  ASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 45  FKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG-GESVETVLTVT 103
           F  IEG ++ V+            TL+I+ A V  S  Y C   N VG GE V +     
Sbjct: 504 FALIEGKNKTVS------------TLVIQAANV--SALYKCEAVNKVGRGERVISFHVTR 549
Query: 104 AP---LAAGVEPTVQ-------TIDFGRPAQFTCKYEISP---PLAAGVEPTVQTIDFGR 150
            P   L   ++PT Q       T D       T  Y++ P   P+  G  PT    +   
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTW-YKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 151 PAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
             +       N    I  M+              + +   +D+G Y C+ ++ +   +  
Sbjct: 609 LWKLNATMFSNSTNDILIME--------------LKNASLQDQGDYVCLAQDRKTKKRHC 654
Query: 211 --GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
              +L +  R   P I  +  ++T + G +    C ASGNP P+I W+ D + LV
Sbjct: 655 VVRQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 708

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK    +H    +++         +SV
Sbjct: 24  MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C   
Sbjct: 84  VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 247 GNPTPEISW 255
            +  P I W
Sbjct: 144 SDAQPHIQW 152

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 48  IEGSSRKVAVPLNDRVKQ-VSGTLI---IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           +  S    A+  +DRVK  V+G  I   I E    D GKY+  + +   G      L+  
Sbjct: 35  VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV 163
           A   A  E       F R  Q     +    +  G+ P V TI  G+    TC   G+P 
Sbjct: 95  AYDEAYAE-------FQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPP 146
Query: 164 KTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 203
             +SW+K+ K +   DH            F I+ V   D G Y  V++N+
Sbjct: 147 PEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSVR 189
           E  +  +      +F C   GNP  T  W+K+GK    +H    +++         +SV 
Sbjct: 17  EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 76
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASG 247
             DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C    
Sbjct: 77  PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 136
Query: 248 NPTPEISW 255
           +  P I W
Sbjct: 137 DAQPHIQW 144

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 48  IEGSSRKVAVPLNDRVKQ-VSGTLI---IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           +  S    A+  +DRVK  V+G  I   I E    D GKY+  + +   G      L+  
Sbjct: 140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV 163
           A   A  E       F R  Q     +    +  G+ P V TI  G+    TC   G+P 
Sbjct: 200 AYDEAYAE-------FQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPP 251
Query: 164 KTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 203
             +SW+K+ K +   DH            F I+ V   D G Y  V++N+
Sbjct: 252 PEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDK 193
           P  QT+     A   CK  G+P+  ISW+K+G   P  +       +   +I ++R  D 
Sbjct: 15  PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74
Query: 194 GMYQCVIRNEQESAQASGELKLGGRFD 220
           G Y CV      +  +SGE       D
Sbjct: 75  GTYTCV------ATSSSGETSWSAVLD 95

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------DSVR 189
           E  +  +      +F C   GNP  T  W+K+GK    +H    +++         +SV 
Sbjct: 24  EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 83
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASG 247
             DKG Y CV+ NE  S   +  L +  R    P+++    ++ +   G +  F C    
Sbjct: 84  PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 143
Query: 248 NPTPEISW 255
           +  P I W
Sbjct: 144 DAQPHIQW 151

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRI 185
            P+   +  G PA   CK EG P  TI W K G+ V  D ++P               RI
Sbjct: 15  HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 186 DSVRKE--DKGMYQCVIRN---EQESAQASGEL 213
              RK   D+G+Y CV RN   E  S  AS E+
Sbjct: 75  VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 95/247 (38%), Gaps = 76/247 (30%)
Query: 12  KAPTFSSVSDIIRFKKPGGESFALLCE----AQENMWFKFIEGSS-------RKVAVPLN 60
           K   +++ SD+   + P  ES  L C     +   + +KF++GS+        ++  P  
Sbjct: 1   KGSVYTAQSDV---QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 61  DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES---VETVLTVTAPLAAGVEPTVQTI 117
           DRV   S  +       +D+G+Y C+V+   GG++   V   LTV  P +   +PT    
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEE-GGQNYGEVSIHLTVLVPPS---KPT---- 109
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC-KYEGNPVKTISWMKDGKPV- 175
                        IS P          ++  G  A  TC +++G+P    SW KDG  + 
Sbjct: 110 -------------ISVP---------SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 147
Query: 176 ------------------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG------ 211
                             P   + +F  D V   D G Y C  +N   +A  S       
Sbjct: 148 TADAKKTRAFMNSSFTIDPKSGDLIF--DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205
Query: 212 -ELKLGG 217
            EL +GG
Sbjct: 206 VELNVGG 212

>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding Domain Complexed With Its Murine Receptor Length = 208

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 121 RPAQFTCKYEISPPLAA-GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--- 176
           R  Q T ++ +  P+    ++ T  T+        TC    +    I W+ + + +    
Sbjct: 96  RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTE 154
Query: 177 ----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 221
                 N  + RID +++ED G YQC I N   S + S  +KL   FDP
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202

>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus Receptor And Cell Adhesion Molecule In The Cea Family Length = 216

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 121 RPAQFTCKYEISPPLAA-GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--- 176
           R  Q T ++ +  P+    ++ T  T+        TC    +    I W+ + + +    
Sbjct: 96  RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTE 154
Query: 177 ----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 221
                 N  + RID +++ED G YQC I N   S + S  +KL   FDP
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202

>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly Length = 290

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 30  GESFALLCEAQE------NMWFKFIEGSSRKVAVPLN-----DRVKQVSGTLIIKEAKVE 78
           G++F ++C  ++      +MW K          V  N     D   +   TL I  A+V+
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 79  DSGKYLCVVNNSVGGESVETVLTV 102
           DSG ++C  NN+ G  +V T L V
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKV 286

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVF 183
           P +  G++ T  T+     A+F  K  G P  T  W KDGK +          D      
Sbjct: 7   PVIVTGLQDT--TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
            I      D G+Y C ++N   S  +S +L +
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 91

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKG 194
           L   VEPT Q +  G      C   G+P+    W K+  P+    + ++ +  V  E +G
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 195 MYQCVIRNEQESAQA 209
            Y C + N+++S  +
Sbjct: 64  TYWCHVYNDRDSQDS 78

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 66/199 (33%)
Query: 34  ALLCEAQ-----ENMW------FKFIEGSSRKVAVPLNDRV----KQVSGTLIIKEAKVE 78
            L+C+A+     E  W      F F EG        L+ R+    +  S +L IK+ K+ 
Sbjct: 19  TLVCDAEGEPIPEITWKRAVDGFTFTEGDKS-----LDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 79  DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           DSG+Y C   + +GG      L +                           E +P   + 
Sbjct: 74  DSGRYDCEAASRIGGHQKSMYLDI---------------------------EYAPKFISN 106
Query: 139 VEPTVQTIDF---GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFR 184
                QTI +   G P   +C  + NP  +I W +D   +P  N           + +  
Sbjct: 107 -----QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE 161
Query: 185 IDSVRKEDKGMYQCVIRNE 203
           I      D G Y C   N 
Sbjct: 162 IAPTSDNDFGRYNCTATNH 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-68
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-50
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-50
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-47
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-46
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-36
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-46
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-27
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-25
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-43
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-42
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-27
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-41
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-28
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-41
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-40
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-32
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-37
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-37
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-36
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-33
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-38
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-20
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-38
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-36
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-34
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-38
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-31
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-37
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-29
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-27
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-30
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-30
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-36
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-26
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-35
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-24
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-23
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-06
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-34
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-33
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-33
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-32
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-20
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-23
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-31
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-29
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-21
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-29
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-29
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-25
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-10
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-27
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-28
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-08
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-07
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-27
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-08
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-27
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-27
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-27
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-26
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-23
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-07
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-26
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-23
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-26
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-25
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-24
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-21
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-24
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-24
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-20
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
2ens_A	96	Advanced glycosylation END product-specific recept	1e-23
2ens_A	96	Advanced glycosylation END product-specific recept	4e-07
2ens_A	96	Advanced glycosylation END product-specific recept	9e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-23
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-23
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-23
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-22
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-21
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-14
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-17
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	8e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-17
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	8e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-08
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-16
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-16
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-16
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-16
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-09
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-16
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-09
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-15
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-07
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-15
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-06
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-07
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-14
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-10
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-14
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-12
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-12
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-12
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	9e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-12
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-11
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	8e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-10
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-10
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-10
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-10
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	7e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	9e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	9e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	8e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-05
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	8e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	7e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	8e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	8e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	8e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	8e-05
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	4e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-06
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	3e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	4e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	4e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	5e-06
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	3e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	5e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	3e-05
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	4e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-05
1xt5_A	135	Variable region-containing chitin-binding protein	9e-05
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	1e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	2e-04
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	3e-04
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	3e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	4e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	4e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	6e-04
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	8e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  224 bits (571), Expect = 4e-68
 Identities = 151/266 (56%), Positives = 186/266 (69%), Gaps = 35/266 (13%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLND 61
           +P+    P   S++        G  + ALLC AQ        W+KFIEG++RK AV LND
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAP       + +      
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP------LSAK------ 347

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
                            ++P  QT+DFGRPA FTC+Y GNP+KT+SWMKDGK +  H+E 
Sbjct: 348 -----------------IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-HSES 389

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
           V RI+SV+KEDKGMYQC +RN++ESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ + 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  128 bits (322), Expect = 1e-33
 Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEA-KVEDSGK 82
           GE+  + C          +W +  +      A+P+N + K    GTLII+   +  D   
Sbjct: 541 GETLIVTCPVAGYPIDSIVWER--DN----RALPINRKQKVFPNGTLIIENVERNSDQAT 594

Query: 83  YLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
           Y CV  N  G  +  ++ + V                            +  P       
Sbjct: 595 YTCVAKNQEGYSARGSLEVQV----------------------------MVLPRIIPFAF 626

Query: 142 TVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF----------RIDSVRK 190
                  G+     C   G  +   I W  DG+ + +                 I++V  
Sbjct: 627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA 686

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
              G + C  RN     Q +  L +   + PP      +D+    G +   +C A G P 
Sbjct: 687 SHAGNFTCHARNLAGHQQFTTPLNV---YVPPRWILEPTDKAFAQGSDAKVECKADGFPK 743

Query: 251 PEISWYLDGKKLVNAER 267
           P+++W           +
Sbjct: 744 PQVTWKKAVGDTPGEYK 760

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  126 bits (318), Expect = 4e-33
 Identities = 57/255 (22%), Positives = 86/255 (33%), Gaps = 49/255 (19%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G S  L C A  N      W      I  + R            V   L I      D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            Y C+  + VG       L V         P ++                        + 
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGL------PYIR------------------------QM 533

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKG 194
             + I  G     TC   G P+ +I W +D + +P +  + VF      I++V R  D+ 
Sbjct: 534 EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQA 593

Query: 195 MYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-E 252
            Y CV +N++  SA+ S E+++     P +I  +F +     G      C   G   P  
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMVL--PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLN 651

Query: 253 ISWYLDGKKLVNAER 267
           I W LDG+ +     
Sbjct: 652 IDWTLDGQAISEDLG 666

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  111 bits (279), Expect = 6e-28
 Identities = 46/284 (16%), Positives = 74/284 (26%), Gaps = 64/284 (22%)

Query: 12  KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
           K P F    ++ I F         + C+A  N     +W +        V      R   
Sbjct: 37  KGPVFLKEPTNRIDFSN--STGAEIECKASGNPMPEIIWIR---SDGTAVGDVPGLRQIS 91

Query: 66  VSGTLIIKEAKVED------SGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTID 118
             G L+    + ED      +  Y C+  N  G   S +  +          +   + + 
Sbjct: 92  SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151

Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH 178
            G  A   C      P                       +  + V+ +SW  D +     
Sbjct: 152 RGNSAVIKCL----IP----------------------SFVADFVEVVSWHTDEEENYFP 185

Query: 179 NEPVFR-----------IDSVRKED-KGMYQCVIRNE---QESAQASGELKL-----GGR 218
                            I  V  ED    YQC  ++    +    A+    +        
Sbjct: 186 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSA 245

Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
               V    F  +T +        C A G P P   WY   +  
Sbjct: 246 VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 97.3 bits (242), Expect = 4e-23
 Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 54/205 (26%)

Query: 30  GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
           G+   L C            W      I             RV +    L I+  +   +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG----ITTSRVGRRGSVLTIEAVEASHA 689

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G + C   N  G +   T L V  P      P                          +E
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYVP------PRWI-----------------------LE 720

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSV 188
           PT +    G  A+  CK +G P   ++W K     P   + +              +D++
Sbjct: 721 PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNI 780

Query: 189 RKEDKGMYQCVIRNEQESAQASGEL 213
           +K ++G Y C   N   S  ++  +
Sbjct: 781 QKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 45/211 (21%)

Query: 70  LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
           + +   +++    +  V   + G ++    L    P A    P                 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQT----LAANPPDADQKGPVF--------------- 41

Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE-------- 180
            +  P                 A+  CK  GNP+  I W++ DG  V D           
Sbjct: 42  -LKEP------TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 94

Query: 181 -----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
                P    D  ++    +Y C+ RN+  S  +               +   + E +  
Sbjct: 95  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV--AQYYEADVNKEHVIR 152

Query: 236 GPNYYFKCIA---SGNPTPEISWYLDGKKLV 263
           G +   KC+      +    +SW+ D ++  
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 17/84 (20%), Positives = 28/84 (33%)

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            + + R +   ++  V      S   +       +  P  +KE  +    +       +C
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61

Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
            ASGNP PEI W       V    
Sbjct: 62  KASGNPMPEIIWIRSDGTAVGDVP 85

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 30  GESFALLCEAQEN-----MWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G    + C+A         W K   +       +  +D ++   GTL +   +  + G Y
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788

Query: 84  LCVVNNSVG-GESVETVLTVTAP 105
           LC   N +G G S   +++V A 
Sbjct: 789 LCEAINGIGSGLSAVIMISVQAH 811

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  165 bits (419), Expect = 5e-50
 Identities = 61/258 (23%), Positives = 94/258 (36%), Gaps = 52/258 (20%)

Query: 30  GESFALLCEAQEN------MWFKF----IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           GES   LC+   +       WF      +  + ++++V  ND     S TL I  A ++D
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73

Query: 80  SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           +G Y CVV    G +S  TV + +   L                  F             
Sbjct: 74  AGIYKCVVTAEDGTQSEATVNVKIFQKL-----------------MFK------------ 104

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRK 190
             PT Q    G  A   C    +   TI W   G+ V    +           +I  ++K
Sbjct: 105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNP 249
            D+G Y+C  R          ++++     P    ++S  + T N G +    C A G P
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224

Query: 250 TPEISWYLDGKKLVNAER 267
            P +SW  DG+ + N E 
Sbjct: 225 EPTMSWTKDGEPIENEEE 242

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =   99 bits (249), Expect = 4e-25
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRI 185
           + P+   I  G    F C+  G+   K ISW   +G+ +  + + +             I
Sbjct: 7   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66

Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
            +   +D G+Y+CV+  E    ++A+  +K+   F   + K + + +    G +    C 
Sbjct: 67  YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCD 123

Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
              +  P I W   G+ ++  + 
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKD 146

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 99.2 bits (247), Expect = 8e-25
 Identities = 47/218 (21%), Positives = 74/218 (33%), Gaps = 48/218 (22%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
              F +      FK+  GE   ++C+   +     +W    +G  R V +  + R   +S
Sbjct: 100 KLMFKNAPTPQEFKE--GEDAVIVCDVVSSLPPTIIWKH--KG--RDVILKKDVRFIVLS 153

Query: 68  -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
              L I+  K  D G Y C       GE     + V                        
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV---------------------- 191

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-- 184
               + P + A       T + G+     C  +G P  T+SW KDG+P+ +  E   +  
Sbjct: 192 ---NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI 248

Query: 185 ---------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
                    I +V K D+  Y C+  N+     AS  L
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFK---FIEGSSRKVAVPLNDRVK 64
            PT  +   I+      G+S  L+C+A         W K    IE               
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFS 250

Query: 65  QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
             S  L I+     D  +Y+C+  N  G +     L V A
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  171 bits (435), Expect = 7e-50
 Identities = 55/252 (21%), Positives = 84/252 (33%), Gaps = 42/252 (16%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GE   L C+          W+K  E +  + A     + K    +L+I +    D G+Y 
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   NSVG  +   VL +                   P  F              +    
Sbjct: 78  CKAENSVGAVASSAVLVIKER--------------KLPPSFA------------RKLKDV 111

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGM 195
               G P  F C+  G+    +SW KDG+ +           HN    +I    +   G 
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171

Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           Y C   N   +A +S +L L     PP          L  G +  FKC  +G    +I+W
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231

Query: 256 YLDGKKLVNAER 267
             D +++     
Sbjct: 232 AKDNREIRPGGN 243

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  137 bits (346), Expect = 3e-37
 Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDS 80
           G   A  C    +      W+K          +  +  ++        TL I +      
Sbjct: 116 GFPVAFECRINGSEPLQVSWYK------DGELLKDDANLQTSFIHNVATLQILQTDQSHV 169

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G+Y C  +N +G  S    LT++                  P  F             ++
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEH--------------EVPPFFD------------LK 203

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
           P    +  G    F C   G     I+W KD + +            N     +  V K 
Sbjct: 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG 263

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPT 250
           D G Y C   N       S +L +    +PP   +       +    +  ++C   G+P 
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320

Query: 251 PEISWYLDGKKLVNAER 267
            ++ WY D  ++  + +
Sbjct: 321 IKVLWYKDETEIQESSK 337

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  136 bits (344), Expect = 6e-37
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 55/256 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDS 80
           GES    C           W K  +       +      K    + + TL + +    D+
Sbjct: 212 GESGTFKCHVTGTAPIKITWAK--DN----REIRPGGNYKMTLVENTATLTVLKVTKGDA 265

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G+Y C  +N  G +S    L V  P      P                  I         
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQEP------PRF----------------IKKL------ 297

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKE 191
              + +      ++ CK  G+P   + W KD   + + ++             + ++  E
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
           D G Y C   N   SA +S  LK+    +PPV ++         G + + +C   G P  
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPF 414

Query: 252 EISWYLDGKKLVNAER 267
           ++SW+ D ++L + ++
Sbjct: 415 QVSWHKDKRELRSGKK 430

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  136 bits (343), Expect = 9e-37
 Identities = 49/248 (19%), Positives = 79/248 (31%), Gaps = 48/248 (19%)

Query: 30  GESFALLCEAQENM-----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
            E     C+   +      W+K  + +  + +        +    L +    VEDSG Y 
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYK--DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 363

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C  +N+ G  S  T L V  P      P  +                        +P   
Sbjct: 364 CEAHNAAGSASSSTSLKVKEP------PVFR-----------------------KKPHPV 394

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGM 195
               G      C+ +G P   +SW KD + +    +             I +V   D G 
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454

Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           YQC   N+  S    G + L     PP   +  SD +   G     +    G     ++W
Sbjct: 455 YQCKASNDVGSDTCVGSITL---KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAW 511

Query: 256 YLDGKKLV 263
           + D  ++V
Sbjct: 512 FKDKGEIV 519

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 54/203 (26%)

Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDS 80
           G    L CE Q     +  W K  +       +    + K +S     ++ I      D 
Sbjct: 399 GADVHLECELQGTPPFQVSWHK--DKRE----LRSGKKYKIMSENFLTSIHILNVDSADI 452

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G+Y C  +N VG ++    +T+ AP                  +F              +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAP-----------------PRFV------------KK 483

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRK 190
            +  +   G   Q     EG    +++W KD   +   ++ ++                 
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543

Query: 191 EDKGMYQCVIRNEQESAQASGEL 213
            + G Y C I+NE  + +    L
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           G  +PP   E         G     +C   G P   I+WY +  KL +A  
Sbjct: 1   GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA 51

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           GE   L    +        WFK    I   S  + +  ++ +     TL    A+  ++G
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI----ATLQFSRAEPANAG 547

Query: 82  KYLCVVNNSVGGESVETVLTV 102
           KY C + N  G +     L+V
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  160 bits (405), Expect = 1e-47
 Identities = 50/248 (20%), Positives = 85/248 (34%), Gaps = 34/248 (13%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G++  L C           +W K          +  ++RV      L +  A  EDSG Y
Sbjct: 23  GDAVELSCPPPGGGPMGPTVWVK------DGTGLVPSERVLVGPQRLQVLNASHEDSGAY 76

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPL---AAGVE 140
            C    +       +V    AP +   E        G         +   P       ++
Sbjct: 77  SCRQRLTQRVLCHFSVRVTDAPSSGDDED-------GEDEAEDTGVDTGAPYWTRPERMD 129

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRK 190
             +  +      +F C   GNP  +ISW+K+G+     +               ++SV  
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 189

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGN 248
            D+G Y CV+ N+  S + +  L +  R    P +     +++T   G +  F C    +
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 249

Query: 249 PTPEISWY 256
             P I W 
Sbjct: 250 AQPHIQWL 257

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 94.3 bits (234), Expect = 1e-22
 Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 36/176 (20%)

Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPD- 177
           GR A+         P     +        G   + +C    G P+    W+KDG  +   
Sbjct: 2   GRAAE--------VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS 53

Query: 178 ----HNEPVFRIDSVRKEDKGMYQCVIRN-------------------EQESAQASGELK 214
                     ++ +   ED G Y C  R                    + E  +   E  
Sbjct: 54  ERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDT 113

Query: 215 LGGRFDPPVIKESF---SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
                 P   +          +       F+C A+GNPTP ISW  +G++     R
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 43/233 (18%), Positives = 63/233 (27%), Gaps = 61/233 (26%)

Query: 11  FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDR 62
           +  P       +     P   +    C A  N      W K      G  R   +    +
Sbjct: 122 WTRPERMDKKLLAV---PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI----K 174

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           ++    +L+++     D G Y CVV N  G       L V                    
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER----------------- 217

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----DGKPVPDH 178
                      P+     P  QT   G   +F CK   +    I W+K    +G  V   
Sbjct: 218 -------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 270

Query: 179 NEPVF------------------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
             P                     + +V  ED G Y C+  N    +  S  L
Sbjct: 271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-----------GTLIIK 73
           G      C+   +      W K +E +  KV       V  +              L + 
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296

Query: 74  EAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
               ED+G+Y C+  NS+G       L V   
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  158 bits (401), Expect = 2e-46
 Identities = 112/192 (58%), Positives = 131/192 (68%), Gaps = 35/192 (18%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             + +LLC AQ        W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           CVVNNSVGGESVETVLTVTAPL                                ++P  Q
Sbjct: 287 CVVNNSVGGESVETVLTVTAPL-----------------SAK------------IDPPTQ 317

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
           T+DFGRPA FTC+Y GNP+KT+SWMKDGK +      V RI+SV+KEDKGMYQC +RN++
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-VLRIESVKKEDKGMYQCFVRNDR 376

Query: 205 ESAQASGELKLG 216
           ESA+AS ELKLG
Sbjct: 377 ESAEASAELKLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  133 bits (335), Expect = 1e-36
 Identities = 53/259 (20%), Positives = 78/259 (30%), Gaps = 44/259 (16%)

Query: 30  GESFALLCEAQENM--------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDS 80
           G S  + C     +        W    E  +       + +   + SG L I+E   ED 
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHT-DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176

Query: 81  -GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
              Y C   + + GE   T L+ T       EP                   S P    +
Sbjct: 177 YKSYQCRTKHRLTGE---TRLSATKGRLVITEPI----------------SSSAPRTPAL 217

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSV 188
                 +         C  +G P  +  W K  +        V             I   
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
             ED G Y CV+ N          L +     P   K     +T++ G    F C  +GN
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 334

Query: 249 PTPEISWYLDGKKLVNAER 267
           P   +SW  DGK + ++E 
Sbjct: 335 PIKTVSWMKDGKAIGHSES 353

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  102 bits (256), Expect = 2e-25
 Identities = 47/285 (16%), Positives = 74/285 (25%), Gaps = 67/285 (23%)

Query: 12  KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
           K P F    ++ I F         + C+A  N     +W +     S   AV     ++Q
Sbjct: 2   KGPVFLKEPTNRIDFSN--STGAEIECKASGNPMPEIIWIR-----SDGTAVGDVPGLRQ 54

Query: 66  V--SGTLIIKEAKVED------SGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQT 116
           +   G L+    + ED      +  Y C+  N  G   S +  +          +   + 
Sbjct: 55  ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 114

Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP 176
           +  G  A   C      P                       +  + V+ +SW  D +   
Sbjct: 115 VIRGNSAVIKCL----IP----------------------SFVADFVEVVSWHTDEEENY 148

Query: 177 DHNEP-----------VFRIDSVRKED-KGMYQCVIRNEQ-ESAQASGELKL------GG 217
                              I  V  ED    YQC  ++      + S             
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208

Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
              P           L         C A G P P   WY   +  
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 139 VEPT-VQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVF 183
            EPT          A+  CK  GNP+  I W++ DG  V D                P  
Sbjct: 8   KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 67

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
             D  ++    +Y C+ RN+  S   S ++ +         +   + E +  G +   KC
Sbjct: 68  AEDYRQEVHAQVYACLARNQFGSI-ISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKC 125

Query: 244 IA---SGNPTPEISWYLDGKKLV 263
           +      +    +SW+ D ++  
Sbjct: 126 LIPSFVADFVEVVSWHTDEEENY 148

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
           P  +KE  +    +       +C ASGNP PEI W       V 
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG 47

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  156 bits (395), Expect = 3e-46
 Identities = 55/257 (21%), Positives = 86/257 (33%), Gaps = 45/257 (17%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDS 80
           G   + +C+A  +      W K    +     +               L I+  +   D 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES----AGAVLRIQPLRTPRDE 76

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
             Y CV  NSVG  +V   LTV              +  G P                + 
Sbjct: 77  NVYECVAQNSVGEITVHAKLTVLRE---------DQLPSGFP-NID------------MG 114

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP--------VFRIDSVRKE 191
           P ++ ++  R A   C   GNP   I+W KD  PV P  +            +I+S  + 
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174

Query: 192 DKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
           D+G Y+CV  N       +   L +  +   P          + PG N    C+A G+P 
Sbjct: 175 DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234

Query: 251 PEISWYLDGKKLVNAER 267
           P + W    + L   + 
Sbjct: 235 PYVKWMQGAEDLTPEDD 251

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  104 bits (262), Expect = 7e-27
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
            EP  Q    G  A F C+  G+P   ++W K GK V                V RI  +
Sbjct: 11  KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL 70

Query: 189 R-KEDKGMYQCVIRNEQESAQASGEL----KLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
           R   D+ +Y+CV +N         +L    +       P I      + +         C
Sbjct: 71  RTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLC 130

Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
            ASGNP PEI+W+ D   +  +  
Sbjct: 131 AASGNPDPEITWFKDFLPVDPSAS 154

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  101 bits (252), Expect = 2e-25
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
             +  +LC A  N      WFK  +      +   N R+KQ+ SG L I+ ++  D GKY
Sbjct: 123 TRTATMLCAASGNPDPEITWFK--DFLPVDPS-ASNGRIKQLRSGALQIESSEETDQGKY 179

Query: 84  LCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
            CV  NS G   S    L V                     +F+            + P 
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNV--------------APRFS------------ILPM 213

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF---RIDSVRKEDKGMYQCV 199
              I  G     TC   G+P+  + WM+  + +   ++       ++    +D   Y CV
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCV 273

Query: 200 IRNEQESAQASGEL 213
             +     +A  ++
Sbjct: 274 AMSSLGVIEAVAQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP   +   D+    G    F C A+G+P P ++W   GKK+ +   
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G +  + C A  +      W +          +   D +    G  +++   V+DS  Y 
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQ--GAE----DLTPEDDMP--VGRNVLELTDVKDSANYT 271

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
           CV  +S+G       +TV +   AG +    
Sbjct: 272 CVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  148 bits (374), Expect = 2e-43
 Identities = 57/257 (22%), Positives = 90/257 (35%), Gaps = 54/257 (21%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSG 81
           GES    C A        W+       +   +    RV      V   L I  A +ED+G
Sbjct: 19  GESKFFTCTAIGEPESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 73

Query: 82  KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
            Y C   ++ G  +    VL +   L                  F               
Sbjct: 74  IYRCQATDAKGQTQEATVVLEIYQKL-----------------TFR------------EV 104

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKED 192
            + Q    G  A+  C+   +P   +SW+   + V   ++  F         I ++ K D
Sbjct: 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD 164

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPT 250
           +G+Y+C  R E        ++ +     PP I   +   + T   G    F C ASG+P 
Sbjct: 165 EGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPE 223

Query: 251 PEISWYLDGKKLVNAER 267
           P ISW+ +GK +   E+
Sbjct: 224 PAISWFRNGKLIEENEK 240

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  104 bits (261), Expect = 8e-27
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 47/229 (20%)

Query: 11  FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
           ++  TF  V     FK+  GE   ++C    +      W         +V    ++R   
Sbjct: 96  YQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLY--HN--EEVTTISDNRFAM 149

Query: 66  VS-GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
           ++   L I      D G Y C       GE     + V                      
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV-------------------- 189

Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF- 183
                 + P ++   +    T + G    F+C+  G+P   ISW ++GK + ++ + +  
Sbjct: 190 -----NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK 244

Query: 184 ------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
                  + ++   D G Y C   N+    +    L++   F       
Sbjct: 245 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV---FVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  104 bits (261), Expect = 9e-27
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
           +  +   +  G    FTC   G P     +   G+ +          +       I +  
Sbjct: 9   ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 68

Query: 190 KEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
            ED G+Y+C   + +   Q A+  L++   +     +E  S +    G +    C  S +
Sbjct: 69  IEDAGIYRCQATDAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125

Query: 249 PTPEISWYLDGKKLVNAER 267
           P P +SW    +++     
Sbjct: 126 PAPAVSWLYHNEEVTTISD 144

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              +  S S   L+ G + +F C A G P     +   G+K+++ +R
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQR 50

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  145 bits (368), Expect = 3e-42
 Identities = 44/292 (15%), Positives = 88/292 (30%), Gaps = 63/292 (21%)

Query: 11  FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVK 64
           F  P F      + ++  G  +  L C+          +W+K  +       + ++++  
Sbjct: 5   FTGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK--DE----REISVDEKHD 55

Query: 65  QVSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
              G  TL+I E   +D+G Y  ++ +  G +     L   A     +E   +       
Sbjct: 56  FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------- 175
            +     E                  G        Y       ++W  +G  +       
Sbjct: 116 LKIQSTAE------------------GIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVK 156

Query: 176 --PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK------------------L 215
                 +   +I+     DKG Y   + + +   Q + +L                   +
Sbjct: 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216

Query: 216 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             +    V+       T+  G      C   G+P PE+SW  + K L + + 
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDH 268

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  106 bits (265), Expect = 3e-27
 Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 28/185 (15%)

Query: 44  WFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99
           W     G     A+  +DRVK         L I E    D GKY+  + +   G      
Sbjct: 142 WSH--NG----SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195

Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
           L+  A   A  E                  E +     G  P V TI  G+    TC   
Sbjct: 196 LSGQAYDEAYAEFQRLKQAA--------IAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247

Query: 160 GNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 209
           G+P   +SW+K+ K +                 F I+ V   D G Y  V++N+  S  +
Sbjct: 248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 307

Query: 210 SGELK 214
              + 
Sbjct: 308 DFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G++  L C    +      W K    +             R         I      DSG
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRT----AYFTINGVSTADSG 292

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
           KY  VV N  G E+ +  ++V  P
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFIP 316

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  142 bits (360), Expect = 3e-41
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 55/256 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDS 80
           GES    C           W K  +       +      K      + TL + +    D+
Sbjct: 20  GESGTFKCHVTGTAPIKITWAK--DN----REIRPGGNYKMTLVENTATLTVLKVTKGDA 73

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G+Y C  +N  G +S    L V  P      P                  I         
Sbjct: 74  GQYTCYASNVAGKDSCSAQLGVQEP------PRF----------------IKKL------ 105

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
              + +      ++ CK  G+P   + W KD   +            +  V  + ++  E
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
           D G Y C   N   SA +S  LK+    +PPV ++         G + + +C   G P  
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222

Query: 252 EISWYLDGKKLVNAER 267
           ++SW+ D ++L + ++
Sbjct: 223 QVSWHKDKRELRSGKK 238

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  108 bits (271), Expect = 3e-28
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVR 189
           ++P    +  G    F C   G     I+W KD + +                  +  V 
Sbjct: 10  LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT 69

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGN 248
           K D G Y C   N       S +L +    +PP   +       +    +  ++C   G+
Sbjct: 70  KGDAGQYTCYASNVAGKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGS 126

Query: 249 PTPEISWYLDGKKLVNAER 267
           P  ++ WY D  ++  + +
Sbjct: 127 PEIKVLWYKDETEIQESSK 145

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  104 bits (262), Expect = 5e-27
 Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 53/202 (26%)

Query: 30  GESFALLCEAQEN-----MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
            E     C+   +     +W+K      E S  +++   +         L +    VEDS
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDS 167

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G Y C  +N+ G  S  T L V                   P  F              +
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKE-----------------PPVFR------------KK 198

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
           P       G      C+ +G P   +SW KD + +          ++      I +V   
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258

Query: 192 DKGMYQCVIRNEQESAQASGEL 213
           D G YQC   N+  S    G +
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           G   PP          L  G +  FKC  +G    +I+W  D +++     
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN 51

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDS 80
           G    L CE Q        W K  +       +    + K +S     ++ I      D 
Sbjct: 207 GADVHLECELQGTPPFQVSWHK--DKR----ELRSGKKYKIMSENFLTSIHILNVDSADI 260

Query: 81  GKYLCVVNNSVGGESVETVLTVTA 104
           G+Y C  +N VG  +    +T+ A
Sbjct: 261 GEYQCKASNDVGSYTCVGSITLKA 284

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  142 bits (358), Expect = 8e-41
 Identities = 50/273 (18%), Positives = 76/273 (27%), Gaps = 48/273 (17%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV 66
           A       + I       E     C    N       W+K  + S   V+     R+ Q 
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYK--DDSKTPVSTEQASRIHQH 60

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE----PTVQTIDFGRP 122
              L    AKVEDSG Y CVV NS     ++                     Q +     
Sbjct: 61  KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--- 179
               C                       P     K E N +  + W KD KP+   N   
Sbjct: 121 GGLVC-----------------------PYMEFFKNENNELPKLQWYKDCKPLLLDNIHF 157

Query: 180 ---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG------ELKLGGRFDPPVIKESFSD 230
              +    + +V ++ +G Y C         Q               +   PVI    ++
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANE 217

Query: 231 E-TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
              ++ G      C  +G  +    W  +G  +
Sbjct: 218 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 85.5 bits (211), Expect = 1e-19
 Identities = 27/178 (15%), Positives = 44/178 (24%), Gaps = 41/178 (23%)

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDF 119
           N     V   LI+     +  G Y C  + +  G+       +        +PT   I  
Sbjct: 154 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI-- 211

Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN 179
                      +SP            +D G   Q  C   G       W  +G  + + +
Sbjct: 212 -----------VSPA------NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254

Query: 180 EP---------------------VFRIDSVRKED-KGMYQCVIRNEQESAQASGELKL 215
                                  V  I  +     K  + C  +N      A  +L  
Sbjct: 255 PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 16/89 (17%)

Query: 30  GESFALLCEAQEN-----MWFK----------FIEGSSRKVAVPLNDRVKQVSGTLIIKE 74
           G    L+C           W             +      V  P N R   +   L I E
Sbjct: 224 GSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283

Query: 75  AKVED-SGKYLCVVNNSVGGESVETVLTV 102
            +       + C   N+ G ++    L  
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  143 bits (363), Expect = 1e-40
 Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 43/252 (17%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKY 83
           G++  L CE   +      W K          +P + RV    SG L I   +  DSG Y
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQK---NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVY 192

Query: 84  LCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
            C   N        E  + + +      +                             P+
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFL-----------------------QRPS 229

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGM 195
                 G+ A   C   G P  + +W++  + +   ++           I +V  +D G 
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGT 289

Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
           Y CV+  + E+  AS EL +     PP      S+       +  F+C  SG P P ++W
Sbjct: 290 YTCVVTYKNENISASAELTV---LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNW 346

Query: 256 YLDGKKLVNAER 267
             +G  ++ ++ 
Sbjct: 347 MKNGDVVIPSDY 358

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  121 bits (305), Expect = 2e-32
 Identities = 53/284 (18%), Positives = 94/284 (33%), Gaps = 60/284 (21%)

Query: 10  GFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDR 62
           G ++  F S  SD +  +   G +  L C A+ +       W K        +A+ ++DR
Sbjct: 18  GRRSLHFVSEPSDAVTMR---GGNVLLNCSAESDRGVPVIKWKK----DGLILALGMDDR 70

Query: 63  VKQVS-GTLII-----KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
            +Q+  G+L+I           D G Y C  +    G  +     V              
Sbjct: 71  KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM------------- 117

Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
                P +F              +    T   G      C+  G+P+ TI W K+ + + 
Sbjct: 118 --VAGPLRFL------------SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163

Query: 176 PDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKL---GGRFDPPV 223
           P   +            I  ++  D G+Y+C  RN          E+++    G      
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY 223

Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             +  S+     G +   +C  SG P P  +W    + +    +
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK 267

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  110 bits (277), Expect = 2e-28
 Identities = 47/196 (23%), Positives = 62/196 (31%), Gaps = 44/196 (22%)

Query: 30  GESFALLCEAQENM-----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+   L C           W +        + +            L+I     +DSG Y 
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLR----GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           CVV       S    LTV                   P  F               P+  
Sbjct: 292 CVVTYKNENISASAELTVLV-----------------PPWFL------------NHPSNL 322

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQC 198
                   +F C   G PV T++WMK+G  V              RI  V K D+G YQC
Sbjct: 323 YAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382

Query: 199 VIRNEQESAQASGELK 214
           V  NE  +AQ+S +L 
Sbjct: 383 VAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 201 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDG 259
           R   E   +      GGR          SD     G N    C A  +   P I W  DG
Sbjct: 2   RWGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60

Query: 260 KKLVNAER 267
             L     
Sbjct: 61  LILALGMD 68

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 19/82 (23%), Positives = 21/82 (25%), Gaps = 12/82 (14%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEAKVEDSGKY 83
                  C           W K   G      V  +D  + V    L I      D G Y
Sbjct: 327 SMDIEFECAVSGKPVPTVNWMK--NG----DVVIPSDYFQIVGGSNLRILGVVKSDEGFY 380

Query: 84  LCVVNNSVGGESVETVLTVTAP 105
            CV  N  G       L V  P
Sbjct: 381 QCVAENEAGNAQSSAQLIVPKP 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  147 bits (372), Expect = 1e-40
 Identities = 58/247 (23%), Positives = 83/247 (33%), Gaps = 52/247 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GE+  L C A  N      WF              N   +Q +  L I    V +SG Y 
Sbjct: 218 GENLNLSCHAASNPPAQYSWFV-------------NGTFQQSTQELFIPNITVNNSGSYT 264

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C  +NS  G +  TV T+T                             PP          
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAE-------------------------PPKPFITSNNSN 299

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQ 197
            ++       TC+ E     T  W  + + +P        ++     + SV + D G Y+
Sbjct: 300 PVEDEDAVALTCEPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYE 358

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
           C I+NE  S   S  + L   + P     S S     PG N    C A+ NP  + SW +
Sbjct: 359 CGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417

Query: 258 DGKKLVN 264
           DG    +
Sbjct: 418 DGNIQQH 424

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  138 bits (350), Expect = 1e-37
 Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 45/246 (18%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGKY 83
            ++ A  CE +      +W+          ++P++ R++    + TL +      D+  Y
Sbjct: 126 KDAVAFTCEPETQDATYLWWV------NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179

Query: 84  LCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
            C   N V     ++V L V                   P   T            + P 
Sbjct: 180 KCETQNPVSARRSDSVILNVLYG----------------PDAPT------------ISPL 211

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
             +   G     +C    NP    SW  +G       E    I ++   + G Y C   N
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE--LFIPNITVNNSGSYTCQAHN 269

Query: 203 EQESAQASGELKLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
                  +    +    +PP     S +   +         C      T    W+++ + 
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQS 328

Query: 262 LVNAER 267
           L  + R
Sbjct: 329 LPVSPR 334

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  138 bits (348), Expect = 2e-37
 Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 54/259 (20%)

Query: 30  GESFALLCEAQEN-----MWFK------------FIEGSSRKVAVPLNDRVKQV--SGTL 70
           G+   LL            W+K            ++ G+ +    P     + +  + +L
Sbjct: 14  GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 71  IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYE 130
           +I+     D+G Y   V  S       T      P                         
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE------------------------ 109

Query: 131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVF 183
              P  +      + ++      FTC+ E     T  W  + + +P        +     
Sbjct: 110 --LPKPSISSNNSKPVEDKDAVAFTCEPETQDA-TYLWWVNNQSLPVSPRLQLSNGNRTL 166

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            + +V + D   Y+C  +N   SA+ S  + L   + P     S  + +   G N    C
Sbjct: 167 TLFNVTRNDTASYKCETQNP-VSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC 225

Query: 244 IASGNPTPEISWYLDGKKL 262
            A+ NP  + SW+++G   
Sbjct: 226 HAASNPPAQYSWFVNGTFQ 244

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  136 bits (343), Expect = 1e-36
 Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 52/247 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G + +L C A  N      W               +  ++Q +  L I     ++SG Y 
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLI-------------DGNIQQHTQELFISNITEKNSGLYT 442

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C  NNS  G S  TV T+T                              P  +      +
Sbjct: 443 CQANNSASGHSRTTVKTITVSAE-------------------------LPKPSISSNNSK 477

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQ 197
            ++      FTC+ E     T  W  +G+ +P               + +V + D   Y 
Sbjct: 478 PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYV 536

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
           C I+N   SA  S  + L   + P     S  D +   G N    C ++ NP+P+ SW +
Sbjct: 537 CGIQNSV-SANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595

Query: 258 DGKKLVN 264
           +G    +
Sbjct: 596 NGIPQQH 602

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  126 bits (317), Expect = 3e-33
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 45/247 (18%)

Query: 29  GGESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSGK 82
             ++ AL CE +      +W+          ++P++ R++  +   TL +      D G 
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWV------NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356

Query: 83  YLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
           Y C + N +  +  + V L V                   P   T            + P
Sbjct: 357 YECGIQNELSVDHSDPVILNVLYG----------------PDDPT------------ISP 388

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR 201
           +      G     +C    NP    SW+ DG       E    I ++ +++ G+Y C   
Sbjct: 389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQAN 446

Query: 202 NEQESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
           N       +           P     S + + +       F C      T    W+++G+
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQ 505

Query: 261 KLVNAER 267
            L  + R
Sbjct: 506 SLPVSPR 512

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  103 bits (257), Expect = 5e-25
 Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 43/193 (22%)

Query: 28  PGGESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSG 81
              ++ A  CE +      +W+    G S    +P++ R++    + TL +      D+ 
Sbjct: 480 EDKDAVAFTCEPEAQNTTYLWWV--NGQS----LPVSPRLQLSNGNRTLTLFNVTRNDAR 533

Query: 82  KYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
            Y+C + NSV     + V L V         P    I                       
Sbjct: 534 AYVCGIQNSVSANRSDPVTLDVLYG------PDTPII----------------------S 565

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVI 200
           P   +   G     +C    NP    SW  +G P    +  V  I  +   + G Y C +
Sbjct: 566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFV 623

Query: 201 RNEQESAQASGEL 213
            N       S   
Sbjct: 624 SNLATGRNNSIVK 636

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 78.8 bits (194), Expect = 9e-17
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 28/155 (18%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------- 184
           +E T   +  G+            +   SW K  +   +     +               
Sbjct: 4   IESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63

Query: 185 -----------IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDET 232
                      I ++ + D G Y   +      + +A+G+ ++     P     S + + 
Sbjct: 64  REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-PKPSISSNNSKP 122

Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           +       F C           W+++ + L  + R
Sbjct: 123 VEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR 156

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G +  L C +  N      W               N   +Q +  L I +    ++G Y 
Sbjct: 574 GANLNLSCHSASNPSPQYSWRI-------------NGIPQQHTQVLFIAKITPNNNGTYA 620

Query: 85  CVVNNSVGGESVETVLTVTAP 105
           C V+N   G +   V ++T  
Sbjct: 621 CFVSNLATGRNNSIVKSITVS 641

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  138 bits (348), Expect = 1e-38
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 35/249 (14%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSG 81
           G      C    +       W      +     +P + R      +G L I + +  D G
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLL----NEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            Y C   + +   + ++V +  + L+   E   Q                  P      P
Sbjct: 172 NYSCFATSHIDFIT-KSVFSKFSQLSLAAEDARQ----------------YAPSIKAKFP 214

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQC 198
                  G+     C   GNPV  I W K           +EP+  I +V  ED+G Y+C
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274

Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
              N +      G + +      P   +  +D   + G +  + C+ASG P P + W  D
Sbjct: 275 EAENIKGRDTYQGRIII---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD 331

Query: 259 GKKLVNAER 267
           G+ L +  R
Sbjct: 332 GQPLASQNR 340

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  130 bits (328), Expect = 1e-35
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 47/195 (24%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+   L C A  N      W        RK+      +       L I+    ED G Y 
Sbjct: 222 GQMVTLECFAFGNPVPQIKW--------RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 273

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   N  G ++ +  + + A                    +                T  
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQP-----------------DWL------------DVITDT 304

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCV 199
             D G   +++C   G P   + W++DG+P+        +    R   +  ED GMYQCV
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCV 364

Query: 200 IRNEQESAQASGELK 214
             N+  +  AS EL 
Sbjct: 365 AENKHGTVYASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  125 bits (315), Expect = 7e-34
 Identities = 55/276 (19%), Positives = 83/276 (30%), Gaps = 57/276 (20%)

Query: 13  APTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV 66
            P F    +  +  +    E   L C A+ N      W     G   ++ +  + R + V
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM--NG--TELKMGPDSRYRLV 59

Query: 67  SGTL-IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
           +G L I    K +D+G Y CV  N+ G     TV++  A L  G                
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARG-----TVVSREASLRFGFLQEFSA--------- 105

Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP-DHNEPVF 183
                         E     I  G    FTC      P  +  W+ +  P     +   F
Sbjct: 106 -------------EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF 152

Query: 184 --------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLG---------GRFDPPVIKE 226
                    I      D G Y C   +  +    S   K            ++ P +  +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
             +D     G     +C A GNP P+I W       
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G      C A         W +  +G      +   +R++   G L   +  +EDSG Y 
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLR--DG----QPLASQNRIEVSGGELRFSKLVLEDSGMYQ 362

Query: 85  CVVNNSVGGESVETVLTVTA 104
           CV  N  G       LTV A
Sbjct: 363 CVAENKHGTVYASAELTVQA 382

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  136 bits (343), Expect = 2e-38
 Identities = 51/265 (19%), Positives = 77/265 (29%), Gaps = 57/265 (21%)

Query: 30  GESFALLCEAQEN------------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV 77
           GE  AL C                  W K    S+R V      R+    G L +  A  
Sbjct: 33  GEPVALRCPQVPYWLWASVSPRINLTWHK--NDSARTVPGEEETRMWAQDGALWLLPALQ 90

Query: 78  EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV--QTIDFGRPAQFTCKYEISPPL 135
           EDSG Y+C   N+   + +   L V     A +      Q +         C        
Sbjct: 91  EDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP------- 143

Query: 136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDS 187
                              +          I W KD   +   NE            +  
Sbjct: 144 -----------------DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHD 186

Query: 188 VRKEDKGMYQCVIRNE----QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYF 241
           V  ED G Y+CV+       Q +   S EL++  + +   PVI       + + G     
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI 246

Query: 242 KC---IASGNPTPEISWYLDGKKLV 263
            C   + +G P   + W+      +
Sbjct: 247 PCKVFLGTGTPLTTMLWWTANDTHI 271

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 87.4 bits (216), Expect = 4e-20
 Identities = 25/151 (16%), Positives = 39/151 (25%), Gaps = 22/151 (14%)

Query: 138 GVEPTVQTIDFGRPAQFTCKY-------EGNPVKTISWMKDGKPVPDHNEPVFR------ 184
           G     +    G P    C           +P   ++W K+        E   R      
Sbjct: 22  GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81

Query: 185 ---IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN--- 238
              +    +ED G Y C  RN     + S EL++        +      + L    +   
Sbjct: 82  ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN-TDAFLPFISYPQILTLSTSGVL 140

Query: 239 --YYFKCIASGNPTPEISWYLDGKKLVNAER 267
                          +I WY D   L     
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE 171

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 80.5 bits (198), Expect = 9e-18
 Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 65/224 (29%)

Query: 30  GESFALLCEAQENM----------WFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
             S  L+C                W+K    ++  + K            +  L++ +  
Sbjct: 135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG------TTHLLVHDVA 188

Query: 77  VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
           +ED+G Y CV+  +  G+      ++        E  ++                     
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSI--------ELRIKKKKEETIPVII---------- 230

Query: 137 AGVEPTVQTIDFGRPAQFTCK---YEGNPVKTISWMKDGKPVPDHNEPVFR--------- 184
                   +   G      CK     G P+ T+ W        +   P  R         
Sbjct: 231 --SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288

Query: 185 -------------IDSVRKEDKGM-YQCVIRNEQESAQASGELK 214
                         D V +ED  M ++CV+ N          +K
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  136 bits (343), Expect = 5e-38
 Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 47/255 (18%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGK 82
           G+   LLC    +       W       +   +   N R     +G L I + +  D G 
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIF-----NEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171

Query: 83  YLCVVNNSVGGESV---ETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           Y CVV N+V    V    T L +    +    EP ++                       
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV---------------------- 209

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNEPVF-----RIDSVRKED 192
             P     + G   +  C   GNPV TI W + DGKP+              I + ++ED
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQED 269

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
            G Y+CV  N +    A G+L     +  P   +  +D  +    + +++C A+G P P 
Sbjct: 270 AGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326

Query: 253 ISWYLDGKKLVNAER 267
             W  +G  L+  +R
Sbjct: 327 YRWLKNGDPLLTRDR 341

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  130 bits (328), Expect = 8e-36
 Identities = 44/195 (22%), Positives = 63/195 (32%), Gaps = 44/195 (22%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G +  L C A  N     +W +     +    +    R  + +G L I   + ED+G Y 
Sbjct: 220 GTTVKLECFALGNPVPTILWRR-----ADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           CV  NS G    +  LT  A                    +                   
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQP-----------------NWV------------QIINDI 305

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCV 199
            +       + CK  G P  T  W+K+G P+         +    I  V   D GMYQCV
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365

Query: 200 IRNEQESAQASGELK 214
             N+     +S EL 
Sbjct: 366 AENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  125 bits (315), Expect = 7e-34
 Identities = 53/278 (19%), Positives = 90/278 (32%), Gaps = 54/278 (19%)

Query: 13  APTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV 66
            P F    S ++       +   L CE + N      W      +   V + ++ R   V
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL----NGTDVDIGMDFRYSVV 60

Query: 67  SGTLIIKE-AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
            G+L+I    K +D+G Y C+  NS G     T+++  A L        +T         
Sbjct: 61  DGSLLINNPNKTQDAGTYQCIATNSFG-----TIVSREAKLQFAYLENFKT--------- 106

Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF- 183
                           +  ++  G+     C     +   + +W+ +  P    N     
Sbjct: 107 -------------RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS 153

Query: 184 ------RIDSVRKEDKGMYQCVIRNEQESAQASGEL--------KLGGRFDPPVIKESFS 229
                  I  V K D G Y CV+ N   + +  G           + G ++P +  +   
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213

Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
                 G     +C A GNP P I W     K +  + 
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
            ES    C+A         W K   G      +   DR++   GTL I    + D+G Y 
Sbjct: 310 EESVFWECKANGRPKPTYRWLK--NG----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQ 363

Query: 85  CVVNNSVGGESVETVLTVTA 104
           CV  N  G       L+V A
Sbjct: 364 CVAENKHGVIFSSAELSVIA 383

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  131 bits (332), Expect = 6e-38
 Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 34/211 (16%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+   L C A  +      WFK          +P  +     +  LI     V+D+G Y+
Sbjct: 33  GQFVKLCCRATGHPFVQYQWFK--MNKE----IPNGN-----TSELIFNAVHVKDAGFYV 81

Query: 85  CVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
           C VNN+   E S  + L V                     Q +        L   VEPT 
Sbjct: 82  CRVNNNFTFEFSQWSQLDVCDI--------------PESFQRSVDGVSESKLQICVEPTS 127

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
           Q +  G      C   G+P+    W K+  P+    + ++ +  V  E +G Y C + N+
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYND 187

Query: 204 QESAQASGEL---KLGGRFDPPVIKESFSDE 231
           ++S  +               P  KE  +D+
Sbjct: 188 RDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  114 bits (288), Expect = 2e-31
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           V P  + +  G+  +  C+  G+P     W K  K +P+ N      ++V  +D G Y C
Sbjct: 23  VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVC 82

Query: 199 VIRN---EQESAQAS----------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
            + N    + S  +                G       I    + + L PG     +C+A
Sbjct: 83  RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
            G+P P   W+ +   L +  +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETK 164

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
              I  +   + +  G      C A+G+P  +  W+   K++
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  128 bits (323), Expect = 7e-37
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 11/140 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDS 187
                  +  G  A F     G PV  +SW +DG+ +     P  +           I +
Sbjct: 10  QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPA 69

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
           V K + G Y     N    A ++ EL +     PP   +     T+  G     +   +G
Sbjct: 70  VTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTG 129

Query: 248 NPTPEISWYLDGKKLVNAER 267
            PTP + +Y DG ++ ++  
Sbjct: 130 IPTPVVKFYRDGAEIQSSLD 149

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  100 bits (252), Expect = 3e-26
 Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 48/219 (21%)

Query: 12  KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
           +APTF+     ++  +   G +                WF+  +G     +     ++  
Sbjct: 4   QAPTFTQPLQSVVVLE---GSTATFEAHISGFPVPEVSWFR--DGQVISTSTLPGVQISF 58

Query: 66  VSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
             G   L I      +SG+Y     N  G  +    L V A  A              P 
Sbjct: 59  SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------------PP 104

Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-------- 175
            F                   T+  G   +   +  G P   + + +DG  +        
Sbjct: 105 NFV------------QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI 152

Query: 176 -PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
             + +     I     ED G Y     N    A ++ EL
Sbjct: 153 SQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P   +      +  G    F+   SG P PE+SW+ DG+ +  +  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL 51

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 15/82 (18%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDS 80
           G    L             +++  +G      +  +   +        +L+I EA  EDS
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYR--DG----AEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171

Query: 81  GKYLCVVNNSVGGESVETVLTV 102
           G Y     NSVG  +    L V
Sbjct: 172 GTYSVNATNSVGRATSTAELLV 193

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  132 bits (334), Expect = 2e-36
 Identities = 50/255 (19%), Positives = 80/255 (31%), Gaps = 44/255 (17%)

Query: 30  GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDS-G 81
           G    L C     +      W       S    +  + RV Q  +G L      ++D   
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMS-----SSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185

Query: 82  KYLCVVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
            Y C                 L V                 G  +               
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS-------------- 231

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKED 192
                Q +  G      C   G P   I+W K G  +P      ++     RI +V +ED
Sbjct: 232 -----QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEED 286

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
            G Y C+  N+  S + +  +++      P   +   +  L PG +    C A+GNP P 
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRV---KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPT 343

Query: 253 ISWYLDGKKLVNAER 267
           + W ++G+ L +A  
Sbjct: 344 VQWMVNGEPLQSAPP 358

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  112 bits (282), Expect = 4e-29
 Identities = 39/199 (19%), Positives = 64/199 (32%), Gaps = 49/199 (24%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEAKVEDSGKY 83
           G    L C A         W+K  +G      +P +  + +  +  L I     EDSG+Y
Sbjct: 237 GMDLLLECIASGVPTPDIAWYK--KGGD----LPSDKAKFENFNKALRITNVSEEDSGEY 290

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C+ +N +G       + V A                    +              EP  
Sbjct: 291 FCLASNKMGSIRHTISVRVKA-----------------APYWL------------DEPKN 321

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGM 195
             +  G   +  C+  GNP  T+ WM +G+P+        R            +   + +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381

Query: 196 YQCVIRNEQESAQASGELK 214
           YQC   NE     A+  + 
Sbjct: 382 YQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  107 bits (268), Expect = 5e-27
 Identities = 54/261 (20%), Positives = 81/261 (31%), Gaps = 57/261 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE----AKVEDS 80
            ++  + CEA+ N      W +        +A      +++ SGTL+I         E  
Sbjct: 32  RDNILIECEAKGNPAPSFHWTR--NSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYE 89

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G+Y C   N  G     T L+    L     P                            
Sbjct: 90  GEYQCFARNKFG-----TALSNRIRLQVSKSPLWPK----------------------EN 122

Query: 141 PTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED 192
                +  G P    C    G P   I WM         ++ V           +V  +D
Sbjct: 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182

Query: 193 -KGMYQCVIRNEQ-ESAQASGELKL------GGRFDPPVI---KESFSDETLNPGPNYYF 241
            +  Y C  R     + Q      L      G     P     + + S + +  G +   
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLL 242

Query: 242 KCIASGNPTPEISWYLDGKKL 262
           +CIASG PTP+I+WY  G  L
Sbjct: 243 ECIASGVPTPDIAWYKKGGDL 263

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 15/150 (10%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI------ 185
            PP           +D        C+ +GNP  +  W ++ +      +P   +      
Sbjct: 15  QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74

Query: 186 -------DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238
                      +E +G YQC  RN+  +A  S  ++L     P   KE+     +  G  
Sbjct: 75  LVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEGAP 133

Query: 239 YYFKC-IASGNPTPEISWYLDGKKLVNAER 267
              +C    G P+P I W     + +  ++
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDK 163

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GE   L+C A  N      W           + P N   +    T+I ++ ++     Y 
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMV---NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383

Query: 85  CVVNNSVGGESVETVLTV 102
           C  +N  G       ++V
Sbjct: 384 CNTSNEHGYLLANAFVSV 401

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  131 bits (332), Expect = 2e-36
 Identities = 46/272 (16%), Positives = 71/272 (26%), Gaps = 68/272 (25%)

Query: 30  GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
                L C  + N       W K                   +++  G+L+    +  D 
Sbjct: 21  NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA------ALRKDEGSLVFLRPQASDE 74

Query: 81  GKYLCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           G Y C      G   S       T  +A+  +   +T   GRP Q  C      P     
Sbjct: 75  GHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC----VLP----- 125

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------RID 186
                                 P   I+W K       + +                   
Sbjct: 126 -------------------NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 166

Query: 187 SVRKEDK---GMYQCVIRN---EQESAQASGELKL-----GGRFDPPVIKESFSDETLNP 235
            V KED      Y C  +N   ++E      E+K       G    PV +    D     
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226

Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           G      C+   NP    +++ +GK +     
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE 258

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  116 bits (291), Expect = 2e-30
 Identities = 48/257 (18%), Positives = 72/257 (28%), Gaps = 45/257 (17%)

Query: 30  GESFALLCEAQEN------MWFK-FIEGSSRKVAVPLNDRVKQV-SGTLII---KEAKVE 78
           G  F L C            W K              + R+     G L      +  V 
Sbjct: 115 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174

Query: 79  DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           D  KY+C   N+   E V     V             +   G P                
Sbjct: 175 DIYKYVCTAKNAAVDEEV-----VLVEYEIKGVTKDNSGYKGEPVPQ------------- 216

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
                     G      C Y  NP+   ++ K+GK V  + E                 +
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 188 VRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIA 245
              ED+G+Y C + N     Q  S +L +      P  ++       +  G +    C  
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKV 333

Query: 246 SGNPTPEISWYLDGKKL 262
           +G P P + W  + K L
Sbjct: 334 TGLPAPNVVWSHNAKPL 350

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  115 bits (288), Expect = 7e-30
 Identities = 44/223 (19%), Positives = 66/223 (29%), Gaps = 40/223 (17%)

Query: 2   VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVA 56
             +         P    VS  +  K   G+   + C    N      +FK  +  +    
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKDMMAKA--GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE 258

Query: 57  VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQ 115
             +    +     L+ K    ED G Y C V+N VG     ++ LTV +       P   
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA------PKY- 311

Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
                             P        V  +  G+     CK  G P   + W  + KP+
Sbjct: 312 ---------------EQKP------EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350

Query: 176 PDHNEPVF----RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                 V      I  V+  DKG Y C   NE         ++
Sbjct: 351 SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 85.0 bits (210), Expect = 4e-19
 Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 14/135 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPV--------FRIDSVR 189
            +P         P    C  EGN      SW KDGK                       +
Sbjct: 11  DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQ 70

Query: 190 KEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASG 247
             D+G YQC        ++      +               ++T   G  +   C + + 
Sbjct: 71  ASDEGHYQCFAETPAGVASSRVISFRKTY---LIASPAKTHEKTPIEGRPFQLDCVLPNA 127

Query: 248 NPTPEISWYLDGKKL 262
            P P I+W       
Sbjct: 128 YPKPLITWKKRLSGA 142

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
            PV+K+  ++           +CI  GN    + SW  DGK     E 
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH 53

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 14/79 (17%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKY 83
           G+   + C+         +W           A PL   R       L+IK  K  D G Y
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSH--------NAKPLSGGRATVTDSGLVIKGVKNGDKGYY 375

Query: 84  LCVVNNSVGGESVETVLTV 102
            C   N  G +  ET++ V
Sbjct: 376 GCRATNEHGDKYFETLVQV 394

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  132 bits (334), Expect = 7e-36
 Identities = 47/262 (17%), Positives = 81/262 (30%), Gaps = 59/262 (22%)

Query: 30  GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
           GE F + C  ++        W +     +   +  +    D   +   TL I  A+V DS
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G ++C  NN+ G  +V T L V       + P                            
Sbjct: 286 GVFMCYANNTFGSANVTTTLEVVDKGFINIFPM--------------------------I 319

Query: 141 PTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF--------------RI 185
            T   ++ G       +YE  P  +   W+   +   D  E                  +
Sbjct: 320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379

Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
             ++  + G Y  ++ N   +A  +  + +      P I       T +   N   +C+A
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYV---NTKPEI------LTYDRLVNGMLQCVA 430

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
           +G P P I WY           
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSA 452

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  106 bits (266), Expect = 2e-26
 Identities = 39/277 (14%), Positives = 72/277 (25%), Gaps = 58/277 (20%)

Query: 4   SDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENM-WFKFIEGSSRKVAVPLNDR 62
             + P     P+       +  +   G+   LLC     + W    E             
Sbjct: 27  PSVSPGEPSPPSIHPGKSDLIVRV--GDEIRLLCTDPGFVKWTF--EILDE--------T 74

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
            +      I ++A+  ++GKY C   + +        + V  P        +        
Sbjct: 75  NENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDP------AKLF------- 118

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPD---- 177
                           +                C      V   S     GKP+P     
Sbjct: 119 ----------------LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162

Query: 178 --HNEPVFRIDSVRK-EDKGMYQCVIRNEQESAQASGELKL---GGRFDPPVIKESFSDE 231
               +    I SV++   +    C +  E +S   S +  L         PV+  S +  
Sbjct: 163 IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS-VLSEKFILKVRPAFKAVPVVSVSKASY 221

Query: 232 TLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
            L  G  +   C      +    +W  +  +    E+
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK 258

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.4 bits (216), Expect = 8e-20
 Identities = 31/226 (13%), Positives = 49/226 (21%), Gaps = 68/226 (30%)

Query: 30  GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
           GE+  L+ E +         W                  N+   +    L +   K  + 
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G Y  +V+NS    ++   + V                                      
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTK----------------------------------- 412

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------- 183
           P + T D        C   G P  TI W          +  V                  
Sbjct: 413 PEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472

Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK 225
                IDS   +  G  +C   N+     A               +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF---KGNNKEQ 515

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 82.8 bits (204), Expect = 4e-18
 Identities = 20/191 (10%), Positives = 46/191 (24%), Gaps = 44/191 (23%)

Query: 78  EDSGKYLCVVN----NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP 133
             +  +LCV+        G           +P      P++                   
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSP------PSIH------------------ 40

Query: 134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-EPVFRIDSVRKED 192
                   +   +  G   +  C   G     + W  +     + N +  +  +     +
Sbjct: 41  -----PGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATN 91

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
            G Y C  ++   +      + +  R DP  +             +   +C  +      
Sbjct: 92  TGKYTCTNKHGLSN-----SIYVFVR-DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTN 145

Query: 253 ISWYLDGKKLV 263
            S      K +
Sbjct: 146 YSLKGCQGKPL 156

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 11/83 (13%)

Query: 189 RKEDKGMYQCVI----RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
                  + CV+    R +  S+Q S      G   PP I    SD  +  G      C 
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSP---GEPSPPSIHPGKSDLIVRVGDEIRLLCT 59

Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
             G     + W  +     N  +
Sbjct: 60  DPG----FVKWTFEILDETNENK 78

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 15/101 (14%)

Query: 27  KPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS----------GTLI 71
                +  L C A         W+       R  A  L   V+ ++              
Sbjct: 418 YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
           I  +  + +G   C   N VG  S              + P
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  134 bits (337), Expect = 1e-35
 Identities = 42/268 (15%), Positives = 73/268 (27%), Gaps = 33/268 (12%)

Query: 2   VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN---MWFKFIEGSSRKVAVP 58
               L  V    P  S   DI+  K     +  + C  Q +   +W     GS ++V V 
Sbjct: 20  ASVGLPSVSLDLPRLSIQKDILTIKA--NTTLQITCRGQRDLDWLWPNNQSGSEQRVEVT 77

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL-----AAGVEPT 113
                     TL I +    D+G Y C    +     +   +           +      
Sbjct: 78  ECSDGLFCK-TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136

Query: 114 VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK 173
             T +  +     C   IS         ++                        ++ DG 
Sbjct: 137 YITENKNKTVVIPCLGSISNL-----NVSL----------------CARYPEKRFVPDGN 175

Query: 174 PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDET 232
            +   ++  F I S      GM  C  +   ES Q+   + +   +    V+        
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235

Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGK 260
           L+ G      C A       I +  +  
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYP 263

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  134 bits (337), Expect = 1e-35
 Identities = 48/259 (18%), Positives = 73/259 (28%), Gaps = 48/259 (18%)

Query: 30  GESFALLCEAQEN-------MWFK------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
           GE   L C A+          W          +  +R +       +K+   TL I    
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298

Query: 77  VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
             D G Y C  ++ +  +   T + V                                  
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG----------------------- 335

Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKED 192
                ++     G   +   KY G P   I W K+G P+          V  I  V + D
Sbjct: 336 ---MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERD 392

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD---ETLNPGPNYYFKCIASGNP 249
            G Y  ++ N     + S  + L     PP I E       ++   G      C     P
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451

Query: 250 TPE-ISWYLDGKKLVNAER 267
            P  I WY   ++    E 
Sbjct: 452 PPHHIHWYWQLEEECANEP 470

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  117 bits (294), Expect = 6e-30
 Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 18/242 (7%)

Query: 37  CEAQENMWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSGKYLCVVNNSVG 92
                  W    +           ++   + G       +       S  Y C   N VG
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537

Query: 93  GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA 152
                    VT      ++P +Q  +        C  + S          +     G   
Sbjct: 538 RGERVISFHVTRGPEITLQPDMQPTE-QESVSLWCTADRSTF------ENLTWYKLGPQP 590

Query: 153 QFTCKYE----GNPVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCVIRNEQES 206
                 E            W  +     +    +    + +   +D+G Y C+ ++ +  
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650

Query: 207 AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
            +     +L       P I  +  ++T + G +    C ASGNP P+I W+ D + LV  
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 710

Query: 266 ER 267
             
Sbjct: 711 SG 712

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  114 bits (287), Expect = 4e-29
 Identities = 34/275 (12%), Positives = 66/275 (24%), Gaps = 46/275 (16%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQ-ENMWFKFIEGSSRKVAVPLNDRVKQVS-GTLI 71
            + S    ++   +   ++  + C     N+          K  VP  +R+   S     
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
           I    +  +G   C    +         + V                             
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY------------------------- 221

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------- 183
                         +  G      C         I +  +       ++ +         
Sbjct: 222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281

Query: 184 -----------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET 232
                       ID V + D+G+Y C   +   + + S  +++  +          S   
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341

Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              G          G P PEI WY +G  L +   
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  102 bits (254), Expect = 1e-24
 Identities = 37/262 (14%), Positives = 77/262 (29%), Gaps = 35/262 (13%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GE   +  +          W+K   G    + +  N  +K     L I E    D+G Y 
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYK--NG----IPLESNHTIKA-GHVLTIMEVSERDTGNYT 397

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEP-----TVQTIDFGRPAQFTCK----------- 128
            ++ N +  E    V+++   +   +        V +  +G     TC            
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457

Query: 129 --YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRI 185
             +++    A      V   +     ++    +      I   K+   + +  N+ V  +
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517

Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
                    +Y+C   N+    +      +      P I     D       +    C A
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHV---TRGPEI-TLQPDMQPTEQESVSLWCTA 573

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
             +    ++WY  G + +    
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHV 595

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 99.4 bits (247), Expect = 8e-24
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 33/209 (15%)

Query: 23  IRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82
           + + K G +   +          K ++   +  A   ++        + +K A ++D G 
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS-TNDILIMELKNASLQDQGD 639

Query: 83  YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
           Y+C+  +    +    V  +T      V   V           T                
Sbjct: 640 YVCLAQDRKTKKRHCVVRQLT------VLERV-------APTIT------------GNLE 674

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGM 195
            QT   G   + +C   GNP   I W KD + + + +  V         I  VRKED+G+
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734

Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVI 224
           Y C   +    A+      + G  +   +
Sbjct: 735 YTCQACSVLGCAKVEAFFIIEGAQEKTNL 763

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.8 bits (183), Expect = 2e-15
 Identities = 24/197 (12%), Positives = 43/197 (21%), Gaps = 46/197 (23%)

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
           ++   +     +LCV   +         L +         P +                 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDL---------PRLS---------------- 35

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----------P 181
                  ++  + TI      Q TC   G       W  +        E           
Sbjct: 36  -------IQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNY 239
              I  V   D G Y+C  R    ++     ++            +      T N     
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 240 YFKCIASGNPTPEISWY 256
              C+ S +        
Sbjct: 147 VIPCLGSISNLNVSLCA 163

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  129 bits (324), Expect = 6e-35
 Identities = 29/249 (11%), Positives = 61/249 (24%), Gaps = 48/249 (19%)

Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             S  L            +W       + +   P  D   +   +++I +     +G+YL
Sbjct: 63  SASITLQVLVDAPGNISCLWVFKHSSLNCQ---PHFDLQNRGVVSMVILKMTETQAGEYL 119

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
             + +     ++   +++   L   +          + A                     
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA--------------------- 158

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCV 199
                      C  E  P   + W+          E    +       + +      +C 
Sbjct: 159 ---------LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC 209

Query: 200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLD 258
            RNE                     + +     L  G   + +C A   N    ++W L+
Sbjct: 210 ARNELGRECTRLFT----IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265

Query: 259 GKKLVNAER 267
            K L     
Sbjct: 266 NKALEEGNY 274

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  104 bits (260), Expect = 6e-26
 Identities = 21/199 (10%), Positives = 45/199 (22%), Gaps = 45/199 (22%)

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
             ++ V  S  Y  V  +      +   L   +        TV                 
Sbjct: 19  NNDSSVGKSSSYPMVSESPED---LGCALRPQSS------GTVY---------------- 53

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVF 183
                   E     +D           +     +  W+     +         +      
Sbjct: 54  --------EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            I  + +   G Y   I++E  +      + +    +  +              +    C
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVC 161

Query: 244 IASGNPTPEISWYLDGKKL 262
           I+   P P + W L   + 
Sbjct: 162 ISESVPEPIVEWVLCDSQG 180

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 99.4 bits (247), Expect = 3e-24
 Identities = 35/261 (13%), Positives = 60/261 (22%), Gaps = 65/261 (24%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
               AL+C ++        W      S  +     +  V       ++ E    D     
Sbjct: 154 ENQDALVCISESVPEPIVEWVL--CDSQGESCKEESPAV-VKKEEKVLHELFGTD---IR 207

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   N +G E                                       P          
Sbjct: 208 CCARNELGRECTRLFTIDLNQ---------------------------TPQ---TTLPQL 237

Query: 145 TIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF---------------RIDSV 188
            +  G P    CK    N    ++W  + K + + N                    + SV
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL--NPGPNYYFKCIAS 246
            + D G Y C           S  + +    +   I  + S E    +    + F     
Sbjct: 298 ARNDTGYYTCSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFK 351

Query: 247 GNPTPEISWYLDGKKLVNAER 267
             P    +W    K     ++
Sbjct: 352 AYPQIRCTWTFSRKSFPCEQK 372

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 97.8 bits (243), Expect = 1e-23
 Identities = 27/200 (13%), Positives = 47/200 (23%), Gaps = 45/200 (22%)

Query: 30  GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           GE   + C+A          W        EG+  +++    +R         +      D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           +G Y C  +          ++T+                                + A  
Sbjct: 302 TGYYTCSSSKHPS---QSALVTIVEK---------------------------GFINATN 331

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKG 194
                 ID      F+ +++  P    +W    K  P       N          K   G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391

Query: 195 MYQCVIRNEQESAQASGELK 214
            Y     N+         L 
Sbjct: 392 EYIFHAENDDAQFTKMFTLN 411

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 6/84 (7%), Positives = 20/84 (23%), Gaps = 7/84 (8%)

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
           + +         Y  V  + ++         L  +     + E+ +   ++   +   + 
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEA-AAVEVDVSASITLQV 70

Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
           +          W      L     
Sbjct: 71  LVDAPGNISCLWVFKHSSLNCQPH 94

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 8/97 (8%), Positives = 24/97 (24%), Gaps = 11/97 (11%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG 68
              ++ +    ++    E F      +        W         + + P   +      
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF------SRKSFPCEQKGLDNGY 378

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
           ++          G+Y+    N     +    L + + 
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  123 bits (310), Expect = 2e-34
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
           ++  +  +      +F C   GNP  +ISW+K+G+     +               ++SV
Sbjct: 20  MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 79

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIAS 246
              D+G Y CV+ N+  S + +  L +  R    P +     +++T   G +  F C   
Sbjct: 80  VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 139

Query: 247 GNPTPEISWYLDGKKL 262
            +  P I W    +  
Sbjct: 140 SDAQPHIQWLKHVEVN 155

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 90.4 bits (224), Expect = 7e-22
 Identities = 47/256 (18%), Positives = 70/256 (27%), Gaps = 63/256 (24%)

Query: 2   VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSR 53
            G D     +  P       +     P   +    C A  N      W K      G  R
Sbjct: 5   TGVDTGAPYWTRPERMDKKLLAV---PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

Query: 54  KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
              +    +++    +L+++     D G Y CVV N  G       L V           
Sbjct: 62  IGGI----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-------- 109

Query: 114 VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--- 170
                               P+     P  QT   G   +F CK   +    I W+K   
Sbjct: 110 ----------------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE 153

Query: 171 -DGKPVPDHNEPVF-----------------RIDSVRKEDKGMYQCVIRNEQESAQASGE 212
            +G  V     P                   R+ +V + D G Y C   N    A+ +  
Sbjct: 154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFW 213

Query: 213 LKLGGRFDPPVIKESF 228
           L +     P   +E  
Sbjct: 214 LSV---HGPRAAEEEL 226

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            +  P   +      +       F+C A+GNPTP ISW  +G++     R
Sbjct: 13  YWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  121 bits (306), Expect = 2e-34
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDGKPVP----DHNEPVFRIDSVRKED 192
               V   D   P    C    +   +    W K+G  +     + +   +RI+  R ED
Sbjct: 8   TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAED 67

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
            G Y CV  +   + +A+  +++      P I      E  N G +    C + G P PE
Sbjct: 68  SGEYHCVY-HFVSAPKANATIEV---KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE 123

Query: 253 ISWYLDGKKLVNAER 267
             W      +     
Sbjct: 124 WMWRKKENGVFEEIS 138

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 92.2 bits (229), Expect = 5e-23
 Identities = 44/225 (19%), Positives = 62/225 (27%), Gaps = 63/225 (28%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQ-------ENMWFKFIEGSSRKVAVPL-NDRVK 64
            P   +  ++I           L C           + W K   G      V L   R  
Sbjct: 3   EPRIVTSEEVIIRDS--LLPVTLQCNLTSSSHTLMYSYWTK--NG------VELTATRKN 52

Query: 65  QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
             +    I + + EDSG+Y CV +  V        + V A       P            
Sbjct: 53  ASNMEYRINKPRAEDSGEYHCVYHF-VSAPKANATIEVKAA------P-----------D 94

Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------- 176
            T                 +  + G+ A   CK  G P     W K    V         
Sbjct: 95  IT------------GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG 142

Query: 177 ------DHNEPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGELK 214
                   N     I +++  ED G Y+C   N   SA  S  L+
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 30  GESFALLCEAQEN-----MWFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV 77
           G+   + C++        MW K        I  SS +  +   +   ++    I+     
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL---NIVNLQIT 163

Query: 78  EDSGKYLCVVNNSVGGESVETVLTV 102
           ED G+Y C   NS+G  SV TVL V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAER 267
           + P I  S      +       +C  + +    +   W  +G +L    +
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK 51

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  123 bits (309), Expect = 2e-33
 Identities = 39/274 (14%), Positives = 75/274 (27%), Gaps = 65/274 (23%)

Query: 30  GESFALLCEAQEN----------------MWFKFIEGSSRKVAVPLND---RVKQVSGTL 70
            E   + C   E+                +W+   +    +  +       R+ +    L
Sbjct: 22  DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81

Query: 71  IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE----PTVQTIDFGRPAQFT 126
             +   + D+G Y C++ N+     V   L V    +        P  +        + T
Sbjct: 82  WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
           C                              +  +   TI+W      + + N  +    
Sbjct: 142 CPN------------------------VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177

Query: 184 --RIDSVRKEDKGMYQCVIRNEQESAQ----ASGELKLGGR--FDPPVIKESFSDETL-- 233
                     + G Y CV+   +         +  +K+ G      P +  S +D  +  
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE 237

Query: 234 -NPGPNYYFKCIA----SGNPTPEISWYLDGKKL 262
             PG      C        +   E+ W +DGKK 
Sbjct: 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 33/196 (16%), Positives = 50/196 (25%), Gaps = 47/196 (23%)

Query: 44  WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           W+           +   + V      L    A + ++G Y CVV     G      LT T
Sbjct: 159 WYMGCY------KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENG--RTFHLTRT 210

Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK----YE 159
             +     P                  I  P     +  V   + G      C     + 
Sbjct: 211 LTVKVVGSPKNAVPPV-----------IHSPN----DHVVYEKEPGEELLIPCTVYFSFL 255

Query: 160 GNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG-MYQCV 199
            +    + W  DGK   D    V                     I  V  ED    Y C 
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315

Query: 200 IRNEQESAQASGELKL 215
            R+ +     + ++K 
Sbjct: 316 ARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.0 bits (165), Expect = 2e-13
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 20/140 (14%)

Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDK 193
           F    +F      +   T+ W    +         FR                     D 
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91

Query: 194 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCI-----ASG 247
           G Y C++RN    ++ +  L++  +             +           C         
Sbjct: 92  GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 248 NPTPEISWYLDGKKLVNAER 267
           +  P I+WY+   K+ N   
Sbjct: 152 SVKPTITWYMGCYKIQNFNN 171

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 25/132 (18%)

Query: 7   KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ---------ENMWFK---FIEGSSRK 54
            P     P   S +D + ++K  GE   + C            E  W       +  +  
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277

Query: 55  VAVPLNDRVKQ-----VSGTLIIKEAKVED-SGKYLCVVNNSVGGESVETVLTVTAP--- 105
           V +  +    +      +  L IK+   ED    Y+C   ++ G  +    +    P   
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPR 337

Query: 106 ----LAAGVEPT 113
               LA G   T
Sbjct: 338 YTVELACGFGAT 349

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  118 bits (297), Expect = 4e-32
 Identities = 41/249 (16%), Positives = 67/249 (26%), Gaps = 46/249 (18%)

Query: 30  GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
           GE+  L C +  ++ W          ++       +    TL  + A  +++G Y C   
Sbjct: 19  GETVTLRCVSNGSVEWDG-------PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTEL 71

Query: 89  NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
                 S    L V  P                   +             +     T+  
Sbjct: 72  EDPMAGSTTIHLYVKDP----------------AHSWN------------LLAQEVTVVE 103

Query: 149 GRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVI 200
           G+ A   C      +K ++S M++G                 F I   +  D   Y C  
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163

Query: 201 RNE-QESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
               +ES      LK+     +PP IK   S      G      C A+            
Sbjct: 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223

Query: 259 GKKLVNAER 267
           G   +    
Sbjct: 224 GDTKLEIPL 232

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 86.2 bits (213), Expect = 5e-20
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 53/215 (24%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSG 81
           G+   L C   +          +  EG        L   V   S     II++AKV DS 
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMR--EGGR----QVLRKTVYFFSPWRGFIIRKAKVLDSN 157

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            Y+C    + G ES  T + +         P ++                       +EP
Sbjct: 158 TYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIK-----------------------LEP 193

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVR 189
           +      G  AQ  C      V     +K G    +                   +++V 
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
            +D G+Y CV  N+  +  A+   ++    +    
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQV---VESHHH 285

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
            PVI+ S  +  + PG     +C+++G     + W          +
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD 45

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  116 bits (291), Expect = 9e-32
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK     +               ++SV
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIAS 246
              DKG Y CV+ NE  S   +  L +  R    P +     ++ +   G +  F C   
Sbjct: 84  VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143

Query: 247 GNPTPEISWYLDGKKL 262
            +  P I W    +K 
Sbjct: 144 SDAQPHIQWIKHVEKN 159

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 93.0 bits (231), Expect = 5e-23
 Identities = 44/256 (17%), Positives = 73/256 (28%), Gaps = 60/256 (23%)

Query: 1   MVGSDLKPVGFKAPTFSSVSDIIR--FKKPGGESFALLCEAQEN-----MWFK---FIEG 50
            V  +      +AP +++   + +     P   +    C A  N      W K     + 
Sbjct: 5   FVSENSNNK--RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62

Query: 51  SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGV 110
             R        +V+    +LI++     D G Y CVV N  G  +    L V        
Sbjct: 63  EHRIGGY----KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER----- 113

Query: 111 EPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK 170
                                  P+     P   +   G   +F CK   +    I W+K
Sbjct: 114 -------------------SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154

Query: 171 DGKPVPDHNEP--------------------VFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
             +       P                    V  + +V + D G Y C + N    A  S
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214

Query: 211 GELKLGGRFDPPVIKE 226
             L +  +   P  ++
Sbjct: 215 AWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 221 PPVIKESF----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P    +         +       F+C A GNP P + W  +GK+     R
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 65

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  119 bits (300), Expect = 4e-31
 Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 56/242 (23%)

Query: 30  GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           GE   + C+A          W        EG+  +++    +R         +      D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           +G Y C  +          ++T+                                + A  
Sbjct: 302 TGYYTCSSSKHPS---QSALVTIVEK---------------------------GFINATN 331

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKG 194
                 ID      F+ +++  P    +W    K  P   + +            K   G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 254
            Y     N+         L +      P +    S    +        C + G P P  +
Sbjct: 392 EYIFHAENDDAQFTKMFTLNI---RRKPQVLAEASASQAS--------CFSDGYPLPSWT 440

Query: 255 WY 256
           W 
Sbjct: 441 WK 442

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  115 bits (289), Expect = 1e-29
 Identities = 31/249 (12%), Positives = 62/249 (24%), Gaps = 48/249 (19%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             S  L            +W       S     P  D   +   +++I +     +G+YL
Sbjct: 63  SASITLQVLVDAPGNISCLWVF---KHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
             + +     ++   +++   L   +          + A                     
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA--------------------- 158

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCV 199
                      C  E  P   + W+          E    +       + +      +C 
Sbjct: 159 ---------LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC 209

Query: 200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLD 258
            RNE      +    +     P     +     L  G   + +C A   N    ++W L+
Sbjct: 210 ARNELGREC-TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265

Query: 259 GKKLVNAER 267
            K L     
Sbjct: 266 NKALEEGNY 274

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  110 bits (275), Expect = 1e-27
 Identities = 22/199 (11%), Positives = 46/199 (23%), Gaps = 45/199 (22%)

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
             ++ V  S  Y  V  +    E +   L   +        TV                 
Sbjct: 19  NNDSSVGKSSSYPMVSESP---EDLGCALRPQSS------GTV----------------- 52

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVF 183
                   E     +D           +     +  W+     +         +      
Sbjct: 53  -------YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            I  + +   G Y   I++E  +      + +    +  +              +    C
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVC 161

Query: 244 IASGNPTPEISWYLDGKKL 262
           I+   P P + W L   + 
Sbjct: 162 ISESVPEPIVEWVLCDSQG 180

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 90.1 bits (223), Expect = 9e-21
 Identities = 34/277 (12%), Positives = 62/277 (22%), Gaps = 66/277 (23%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
              ++      R  +      AL+C ++        W      S  +             
Sbjct: 140 TLLYTLRRPYFRKME---NQDALVCISESVPEPIVEWVL--CDSQGES-CKEESPAVVKK 193

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
              ++ E          C   N   G     + T+              +  G P    C
Sbjct: 194 EEKVLHE---LFGTDIRCCARNE-LGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRC 249

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--- 184
           K       A  V                          ++W  + K + + N        
Sbjct: 250 K-------AVHVNHGF---------------------GLTWELENKALEEGNYFEMSTYS 281

Query: 185 ------------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSD 230
                       + SV + D G Y C           S  + +    +   I    S  D
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTI---VEKGFINATNSSED 335

Query: 231 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             ++    + F       P    +W    K     ++
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 79.7 bits (196), Expect = 4e-17
 Identities = 24/231 (10%), Positives = 54/231 (23%), Gaps = 70/231 (30%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
            E F      +        W         + + P   +      ++          G+Y+
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTF------SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYI 394

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
               N     +    L +                               P         Q
Sbjct: 395 FHAENDDAQFTKMFTLNI----------------------------RRKP---------Q 417

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------------R 184
            +     +Q +C  +G P+ + +W K     P+  E +                      
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477

Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
           ++        + +C   N   ++  +  L   G    P I++  +    + 
Sbjct: 478 LNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP--FPFIQDGGTKHHHHH 526

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 51.6 bits (123), Expect = 8e-08
 Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 13/93 (13%)

Query: 188 VRKEDKGMYQCVIRNEQES-------------AQASGELKLGGRFDPPVIKESFSDETLN 234
              +D  + +CV+ N + +             +++  +L    R          +   ++
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61

Query: 235 PGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              +   + +          W      L     
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  115 bits (289), Expect = 7e-31
 Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 46/249 (18%)

Query: 30  GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
           G +  L C    ++ W           +          S  L    A  +++G Y C   
Sbjct: 19  GATVTLRCVGNGSVEW-------DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71

Query: 89  NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
               G S    L V  P                   +             V      +  
Sbjct: 72  GDPLGGSAAIHLYVKDP----------------ARPWN------------VLAQEVVVFE 103

Query: 149 GRPAQFTCKYEGNPVK-TISWMK-DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVI 200
            + A   C      ++  +S ++  G+P+  H          F I   +      YQC  
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSA 163

Query: 201 RNE-QESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
               ++    S  LK       PP +    ++     G      C AS        +   
Sbjct: 164 LMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223

Query: 259 GKKLVNAER 267
               +   +
Sbjct: 224 NNTKLAIPQ 232

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 80.0 bits (197), Expect = 8e-18
 Identities = 27/203 (13%), Positives = 46/203 (22%), Gaps = 46/203 (22%)

Query: 30  GESFALLCEA-----QENMWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEAKVEDSGKY 83
            +   L C       +  +    + G      +  +            I  AK   S  Y
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRP----LMRHTNYSFSPWHGFTIHRAKFIQSQDY 159

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C      G + +   + +         P +                        + P  
Sbjct: 160 QCSALMG-GRKVMSISIRLKVQKVIPGPPALT-----------------------LVPAE 195

Query: 144 QTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF-----------RIDSVRKE 191
                G  AQ  C      V   +    +   +    +  F            +D V  +
Sbjct: 196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ 255

Query: 192 DKGMYQCVIRNEQESAQASGELK 214
             G Y CV  N Q     S   +
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 73.8 bits (181), Expect = 1e-15
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 12/135 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP----VPDHNEPVFRIDSVRKEDKG 194
                  +  G      C   G    ++ W     P      D +  +   ++   ++ G
Sbjct: 9   PSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTG 64

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEI 253
            Y+C    +     A+  L +              +  +    +    C+ +       +
Sbjct: 65  TYRCTEPGDPLGGSAAIHLYVKDP--ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGV 122

Query: 254 SWY-LDGKKLVNAER 267
           S   + G+ L+    
Sbjct: 123 SLVRVRGRPLMRHTN 137

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           GE+  ++C A                  +       ++   Q   TL + +   + +G Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260

Query: 84  LCVVNNSVGGESVETVLTVTAP 105
            CV +N  G  S      V   
Sbjct: 261 SCVASNVQGKHSTSMFFRVVES 282

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  107 bits (270), Expect = 5e-29
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
           E    T   G  AQ +C+  G P+  I W + GK +          D       + +  +
Sbjct: 13  EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIASG 247
           ED+G+Y C+  NE    + S +L L      P     +          G       +  G
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG 129

Query: 248 NPTPEISWYLDGKKLVNAER 267
            P P ++W+   K L N+E 
Sbjct: 130 RPVPAMTWFHGQKLLQNSEN 149

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 94.0 bits (234), Expect = 9e-24
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 55/226 (24%)

Query: 9   VGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDR 62
           +  +AP       D+       GE+  L C+          W++   G      +  + +
Sbjct: 3   MSGEAPGIRKEMKDVTTKL---GEAAQLSCQIVGRPLPDIKWYR--FG----KELIQSRK 53

Query: 63  VKQVS----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
            K  S     TL +   + ED G Y C+  N VG     + L + A       P      
Sbjct: 54  YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------P------ 101

Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-- 176
                      +  P               G   +    Y G PV  ++W    K +   
Sbjct: 102 -----------QFHPGY---PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS 147

Query: 177 -------DHNEPVFRIDSV-RKEDKGMYQCVIRNEQESAQASGELK 214
                    +     + +V RK   G Y+  + N   +  A  +++
Sbjct: 148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I++   D T   G      C   G P P+I WY  GK+L+ + +
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRK 53

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 16/84 (19%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEA-KVED 79
           G +  L             WF           +  ++ +   +      L++K   +   
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFH--GQK----LLQNSENITIENTEHYTHLVMKNVQRKTH 171

Query: 80  SGKYLCVVNNSVGGESVETVLTVT 103
           +GKY   ++N  G       + + 
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  107 bits (269), Expect = 8e-29
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 37/198 (18%)

Query: 30  GESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDS 80
           G+   LLC+   +        W      +   V + ++ R  V Q +G L I   +  D 
Sbjct: 23  GKGMVLLCDPPYHFPDDLSYRWLL----NEFPVFITMDKRRFVSQTNGNLYIANVEASDK 78

Query: 81  GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           G Y C V++    +SV +           + P  +      PA               V+
Sbjct: 79  GNYSCFVSSPSITKSVFSKFIP-------LIPIPERTTKPYPADIV------------VQ 119

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGM 195
                   G+     C   GNPV  I W K  +P+P       +  V +I +++ ED+G+
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGI 179

Query: 196 YQCVIRNEQESAQASGEL 213
           Y+C   N +   +    +
Sbjct: 180 YECEAENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 99.2 bits (247), Expect = 1e-25
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 18/146 (12%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK--TISWMKDGKPVP-DHNEPVF--------RIDSV 188
           E     +  G+     C    +     +  W+ +  PV    ++  F         I +V
Sbjct: 14  ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANV 73

Query: 189 RKEDKGMYQCVIRNEQESAQASGEL-------KLGGRFDPPVIKESFSDETLNPGPNYYF 241
              DKG Y C + +   +     +        +   +  P  I   F D     G N   
Sbjct: 74  EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTL 133

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
           +C A GNP P+I W    + + +   
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAE 159

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G++  L C A  N      W K          +P    +      L I   ++ED G Y 
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK--VLEP----MPSTAEISTSGAVLKIFNIQLEDEGIYE 181

Query: 85  CVVNNSVGGESVETVLTVTA 104
           C   N  G +  +  + V A
Sbjct: 182 CEAENIRGKDKHQARIYVQA 201

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  107 bits (268), Expect = 1e-28
 Identities = 29/141 (20%), Positives = 44/141 (31%), Gaps = 13/141 (9%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-----------PDHNEPVFRIDSV 188
           E     + +   A   CK  G+P   + W + GK +                    I SV
Sbjct: 10  ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69

Query: 189 RKEDKGMYQCVIRNEQESAQASGEL--KLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
             +D  +YQ    N+  S   +  L  ++  +   P   E         G     K   S
Sbjct: 70  TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS 129

Query: 247 GNPTPEISWYLDGKKLVNAER 267
           G P P I+W      + N   
Sbjct: 130 GKPDPVITWQKGQDLIDNNGH 150

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.8 bits (236), Expect = 6e-24
 Identities = 29/204 (14%), Positives = 49/204 (24%), Gaps = 49/204 (24%)

Query: 30  GESFALLCEAQ-----ENMWFK-----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
             +  L+C+          W++       +G   ++              LII     +D
Sbjct: 19  QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG-----YHQLIIASVTDDD 73

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           +  Y     N  G  S    L V  P        +                         
Sbjct: 74  ATVYQVRATNQGGSVSGTASLEVEVP------AKIHLPKTLEG----------------- 110

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
                    G        + G P   I+W K    +                +   + V 
Sbjct: 111 -MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169

Query: 190 KEDKGMYQCVIRNEQESAQASGEL 213
           ++D G Y    +N     Q + EL
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P  KE   +  +    N    C  +G+P P + WY  GK+++    
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL 50

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 18/108 (16%)

Query: 6   LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLN 60
             P     P        +   +  GE  ++             W K          +  N
Sbjct: 97  EVPAKIHLPKTLEGMGAVHALR--GEVVSIKIPFSGKPDPVITWQK--GQ----DLIDNN 148

Query: 61  DRVKQVSG-----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
              + +        +     + +D+G Y+    N  G +     L V 
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  106 bits (266), Expect = 2e-28
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 44/215 (20%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
             TF  V     FK+  GE   ++C    +      W         +V    ++R   ++
Sbjct: 2   MLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLY--HN--EEVTTISDNRFAMLA 55

Query: 68  -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
              L I      D G Y C       GE     + V                        
Sbjct: 56  NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI----------------------- 92

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
               + P ++   +    T + G    F+C+  G+P   ISW ++GK + ++ + +    
Sbjct: 93  --VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 150

Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                + ++   D G Y C   N+    +    L+
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  102 bits (256), Expect = 4e-27
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRK 190
              + Q    G  A+  C+   +P   +SW+   + V   ++  F         I ++ K
Sbjct: 7   EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK 66

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGN 248
            D+G+Y+C  R E        ++ +     PP I   +   + T   G    F C ASG+
Sbjct: 67  SDEGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGS 125

Query: 249 PTPEISWYLDGKKLVNAER 267
           P P ISW+ +GK +   E+
Sbjct: 126 PEPAISWFRNGKLIEENEK 144

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
               +E  S +    G +    C  S +P P +SW    +++   
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI 46

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGK 82
           GE     C A  +      WF+   G      +  N++      +  L ++     D G 
Sbjct: 113 GEEMTFSCRASGSPEPAISWFR--NG----KLIEENEKYILKGSNTELTVRNIINSDGGP 166

Query: 83  YLCVVNNSVGGESVETVLTVTA 104
           Y+C   N  G +  +  L V  
Sbjct: 167 YVCRATNKAGEDEKQAFLQVFV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  104 bits (262), Expect = 7e-28
 Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 12/138 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE--------PVFRIDSVRK 190
                        A F C  E  P   ISW ++   +   +          +  I SV  
Sbjct: 12  TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVED 71

Query: 191 EDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
            D G+Y C   N    + ++ G L++      P I     +  +  G      C   GNP
Sbjct: 72  SDDGIYCCTANNGVGGAVESCGALQV---KMKPKITRPPINVKIIEGLKAVLPCTTMGNP 128

Query: 250 TPEISWYLDGKKLVNAER 267
            P +SW      L    R
Sbjct: 129 KPSVSWIKGDSALRENSR 146

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 91.3 bits (227), Expect = 1e-22
 Identities = 43/196 (21%), Positives = 63/196 (32%), Gaps = 50/196 (25%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
            E    +C  +        W +    I+    + ++  N         L I   +  D G
Sbjct: 22  EEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG------QLLTILSVEDSDDG 75

Query: 82  KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
            Y C  NN VGG       L V         P           + T              
Sbjct: 76  IYCCTANNGVGGAVESCGALQVKMK------P-----------KIT------------RP 106

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKG 194
           P    I  G  A   C   GNP  ++SW+K    + +            RI +V+KED G
Sbjct: 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAG 166

Query: 195 MYQCVIRNEQESAQAS 210
            Y+CV +N   +A + 
Sbjct: 167 QYRCVAKNSLGTAYSK 182

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
           G    L C    N      W K    S+    +  N R+  + SG+L I   + ED+G+Y
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIK--GDSA----LRENSRIAVLESGSLRIHNVQKEDAGQY 168

Query: 84  LCVVNNSVG-GESVETVLTVTAP 105
            CV  NS+G   S    L V   
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            PVI                F C     P PEISW  +   +   + 
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT 53

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  104 bits (261), Expect = 2e-27
 Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 30  GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVED 79
            E   L       +      W     G     A+  +DRVK         L I E    D
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSH--NG----SAIRYSDRVKTGVTGEQIWLQINEPTPND 70

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
            GKY+  + +   G      L+  A   A  E         R  Q     +    +  G+
Sbjct: 71  KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ-------RLKQAAIAEKNRARVLGGL 123

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
            P V TI  G+    TC   G+P   +SW+K+ K +                 F I+ V 
Sbjct: 124 -PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
             D G Y  V++N+  S  +   + 
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 94.2 bits (234), Expect = 1e-23
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 37/157 (23%)

Query: 148 FGRPAQFTCKYEG----------NPVKTISWMKDGKPV---------PDHNEPVFRIDSV 188
                +     EG               ++W  +G  +             +   +I+  
Sbjct: 7   SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK------------------LGGRFDPPVIKESFSD 230
              DKG Y   + + +   Q + +L                   +  +    V+      
Sbjct: 67  TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126

Query: 231 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            T+  G      C   G+P PE+SW  + K L   + 
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 8   PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKF---IEGSSRKVAVPL 59
               +A     + D++  ++  G++  L C        E  W K    +  +        
Sbjct: 112 AEKNRARVLGGLPDVVTIQE--GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
             R         I      DSGKY  VV N  G E+ +  ++V  P
Sbjct: 170 AGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  104 bits (260), Expect = 2e-27
 Identities = 40/139 (28%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
             P  QT   G  A F C+  G+P   I W K GK V           D +  V RI  +
Sbjct: 11  RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPL 70

Query: 189 R-KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKC 243
           R   D+ +Y+CV  N       S  L +          P I      + +         C
Sbjct: 71  RTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130

Query: 244 IASGNPTPEISWYLDGKKL 262
            ASGNP PEI+W+ D   +
Sbjct: 131 AASGNPDPEITWFKDFLPV 149

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 88.0 bits (218), Expect = 3e-21
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 52/206 (25%)

Query: 30  GESFALLCEAQEN-----MWFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKV-ED 79
           G   + +C+A  +     +W K  +G    + R   +  +D        L I+  +   D
Sbjct: 21  GGVASFICQATGDPRPKIVWNK--KGKKVSNQRFEVIEFDDGS---GSVLRIQPLRTPRD 75

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
              Y CV +N+VG  SV T LTV                                    +
Sbjct: 76  EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPT----------ID------------M 113

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDS 187
            P ++ ++  R A   C   GNP   I+W KD  PV   N                +I+ 
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ 173

Query: 188 VRKEDKGMYQCVIRN---EQESAQAS 210
             + D+G Y+CV  N    + SA A+
Sbjct: 174 SEESDQGKYECVATNSAGTRYSAPAN 199

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP    +  D+T   G    F C A+G+P P+I W   GKK+ N   
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF 52

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  105 bits (263), Expect = 3e-27
 Identities = 32/233 (13%), Positives = 59/233 (25%), Gaps = 27/233 (11%)

Query: 30  GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
             +F L C     + W +  +   +++A   +      S  L +      D+G+Y C  N
Sbjct: 15  SSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDG---TFSSVLTLTNLTGLDTGEYFCTHN 71

Query: 89  NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
           +S G E+ E                   I    P            L    E     +  
Sbjct: 72  DSRGLETDERKRL--------------YIFVPDPTV--------GFLPNDAEELFIFLTE 109

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
                  C+     +  ++  +    V        +       +   Y C          
Sbjct: 110 ITEITIPCRVTDPQL-VVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVD 168

Query: 209 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
           +        +     +  +     +  G N    CI  GN      W    K+
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 66.6 bits (162), Expect = 5e-13
 Identities = 21/155 (13%), Positives = 31/155 (20%), Gaps = 40/155 (25%)

Query: 75  AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
           + + +   Y+C           +                                     
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ--------------------------VSS 181

Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------- 184
           +   V      +  G      C   GN V    W    K      EPV            
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241

Query: 185 ----IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
               I S   ED G Y C +       Q    + +
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAV---PLNDRVKQVSGTLIIKEAKVEDSG 81
           GE+  L+C    N      W    + S R V      L D    +   L I  A++EDSG
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255

Query: 82  KYLCVVNNSVGGESVETVLTVT 103
            Y C V  SV     E  + +T
Sbjct: 256 TYTCNVTESVNDHQDEKAINIT 277

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  102 bits (255), Expect = 7e-27
 Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 51/205 (24%)

Query: 30  GESFALLCEAQEN------MWFKF----IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           GES   LC+   +       WF      +  + ++++V  ND     S TL I  A ++D
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73

Query: 80  SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           +G Y CVV    G +S  TV + +   L                  F             
Sbjct: 74  AGIYKCVVTAEDGTQSEATVNVKIFQKL-----------------MFK------------ 104

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRK 190
             PT Q    G  A   C    +   TI W   G+ V    +  F        +I  ++K
Sbjct: 105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164

Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
            D+G Y+C  R          ++++
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 97.6 bits (243), Expect = 4e-25
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRI 185
           + P+   I  G    F C+  G+   K ISW   +G+ +  + + +             I
Sbjct: 7   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66

Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
            +   +D G+Y+CV+  E    ++A+  +K+   F   + K + + +    G +    C 
Sbjct: 67  YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCD 123

Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
              +  P I W   G+ ++  + 
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKD 146

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
              F +      FK+  GE   ++C+   +     +W        R V +  + R   +S
Sbjct: 100 KLMFKNAPTPQEFKE--GEDAVIVCDVVSSLPPTIIWKH----KGRDVILKKDVRFIVLS 153

Query: 68  -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
              L I+  K  D G Y C       GE     + V 
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVNAER 267
              +    S   ++ G + +F C  +G+    +ISW+    + ++  +
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ 49

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  100 bits (250), Expect = 3e-26
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 16/137 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDS 187
             P   T+  G+P +  C  EG     I W+KDG  V + ++               + S
Sbjct: 7   GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 66

Query: 188 VRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
           V + D G Y C + +  E+       L + G    P       D  + P   +   C A 
Sbjct: 67  VERSDAGRYWCQVEDGGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAPFQLSCEAV 123

Query: 247 GNPTP-EISWYLDGKKL 262
           G P P  I W+    K+
Sbjct: 124 GPPEPVTIVWWRGTTKI 140

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 91.0 bits (226), Expect = 9e-23
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 30  GESFALLCEAQEN-----MWFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
           G+   L C  +        W K  +G    +  ++ +P+++  +   G L +K  +  D+
Sbjct: 17  GQPVKLNCSVEGMEEPDIQWVK--DGAVVQNLDQLYIPVSE--QHWIGFLSLKSVERSDA 72

Query: 81  GKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           G+Y C V +    E S    LTV                      FT            V
Sbjct: 73  GRYWCQVEDGGETEISQPVWLTVEGV-----------------PFFT------------V 103

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           EP    +    P Q +C+  G P   TI W +    +         ++        M+ C
Sbjct: 104 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSC 163

Query: 199 VIRNEQESAQAS 210
              N +  A + 
Sbjct: 164 EAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              +  +    T++ G      C   G   P+I W  DG  + N ++
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ 48

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (259), Expect = 7e-26
 Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 50/214 (23%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSS-RKVAVPLNDRVK----QVSGTLIIKEAKVED 79
                L+C+A+        W + ++G +  +    L+ R++      S +L IK+ K+ D
Sbjct: 15  NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 74

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
           SG+Y C   + +GG      L +                     +F              
Sbjct: 75  SGRYDCEAASRIGGHQKSMYLDIEY-----------------APKFI------------S 105

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSV 188
             T+     G P   +C  + NP  +I W +D   +P  N    +           I   
Sbjct: 106 NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT 165

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
              D G Y C   N   +      L L      P
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYILALADVPSSP 199

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 96.0 bits (239), Expect = 5e-23
 Identities = 25/140 (17%), Positives = 36/140 (25%), Gaps = 19/140 (13%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------- 183
           ++   +T          C  EG P+  I+W +                            
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64

Query: 184 -RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
             I  V+  D G Y C   +     Q S  L +      P    + +      G      
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINIS 121

Query: 243 CIASGNPTPEISWYLDGKKL 262
           C    NP   I W  D   L
Sbjct: 122 CDVKSNPPASIHWRRDKLVL 141

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  102 bits (255), Expect = 8e-26
 Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 57/274 (20%)

Query: 29  GGESFALLCEAQENM----WFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G  S    C+         W K     E S R       ++       +  K+  ++D G
Sbjct: 17  GVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKT-----KMTFKDLGMDDLG 71

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            Y C V ++ G  S   +          +    +                 P +    E 
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK----------------FPTVPVKSEL 115

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFR--IDSVRK 190
            V+ ++ G+   +    + +    ++++ + K +          D N  +    ++ ++ 
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175

Query: 191 EDKGMYQCVIRNEQESAQASGEL----------------KLGGRFDPPVIKESFSDETLN 234
           ED+G Y   +++ + +  ++  L                +   R   P   E  S E   
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-T 234

Query: 235 PGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
              N   KC  +       I WY D +++   E+
Sbjct: 235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEK 268

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 92.7 bits (230), Expect = 3e-22
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 33/202 (16%)

Query: 30  GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
                   +A++        +        EG   K+ +  N  +      + +++ + ED
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFMEKLQDED 177

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
            G Y   + +         VL          E   Q  ++ R            P    V
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------QGP--HFV 226

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
           E     +         CK      +T I W KD + +    +  F        I    K+
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286

Query: 192 DKGMYQCVIRNEQESAQASGEL 213
           D G+Y+ ++++++   ++  +L
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 20/143 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
              D      F C  +  P    SW KD                N+       +  +D G
Sbjct: 13  VDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLG 71

Query: 195 MYQCVIRNE----------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
           +Y C + +           +E  +    L    +F    +K   + E L  G   ++   
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
              +   ++++  + K++    +
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPK 154

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSG 81
             +  L C+          +W+K       +  + ++++     G  TL+I E   +D+G
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYK------DEREISVDEKHDFKDGICTLLITEFSKKDAG 289

Query: 82  KYLCVVNNSVGGESVETVLTVTA 104
            Y  ++ +  G +     L   A
Sbjct: 290 IYEVILKDDRGKDKSRLKLVDEA 312

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  101 bits (253), Expect = 1e-25
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 42/231 (18%)

Query: 48  IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPL 106
              S R   V      +  + +L +   +VED G Y C+      G  SV+  L V A  
Sbjct: 59  YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

Query: 107 AAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI 166
               E     +         C        + G                     G P   I
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCV-------STG---------------------GRPPAQI 150

Query: 167 SWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
           +W  D   +P+ ++             ++ +    + D     C + +E         + 
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210

Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN 264
           L   + P V    + +            C A  NP P   +W      L  
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP 261

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 76.7 bits (188), Expect = 2e-16
 Identities = 28/200 (14%), Positives = 43/200 (21%), Gaps = 45/200 (22%)

Query: 29  GGESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
           G       C +          W      +  +S+            V+   I+  +   D
Sbjct: 131 GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQVD 188

Query: 80  SGKYLCVVNNSVGGESVET--VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
                C V +    +       LTV  P    +                           
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG------------------------- 223

Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDH---NEPVFRIDSVRKEDK 193
                         A  TC    NP     +W     P+P           I  V K   
Sbjct: 224 ---YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPIN 280

Query: 194 GMYQCVIRNEQESAQASGEL 213
               C + N   + QA   +
Sbjct: 281 TTLICNVTNALGARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 72.8 bits (178), Expect = 4e-15
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 37/163 (22%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDGKPVP----------------- 176
             PT      G      C  +        V  ++W + G+                    
Sbjct: 5   QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 64

Query: 177 ----------DHNEPVFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIK 225
                     +      R+  +R ED+G Y C  +   Q S      L++      P   
Sbjct: 65  LEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV---LAKPQNT 121

Query: 226 ESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAER 267
                  L   P    +C++  G P  +I+W+ D   + N  +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ 164

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 28  PGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
            G     L C+A+ N       W             PL          L+I+      + 
Sbjct: 230 LGQNEATLTCDARSNPEPTGYNWST--TMG------PLPPFAVAQGAQLLIRPVDKPINT 281

Query: 82  KYLCVVNNSVGGESVETVLTV 102
             +C V N++G    E  + V
Sbjct: 282 TLICNVTNALGARQAELTVQV 302

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 97.0 bits (241), Expect = 1e-24
 Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 58/231 (25%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK------FIEGSSRKVAVPLNDR 62
            +  +    ++  +   ES  L C           W         +   + ++  P  DR
Sbjct: 2   GSVYTAQSDVQVPE--NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           V   S  +       +D+G+Y C+V+   G    E  + +          TV       P
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL----------TVLV-----P 104

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEP 181
                                 ++  G  A  TC  ++G+P    SW KDG  +   +  
Sbjct: 105 PSKP------------TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152

Query: 182 VFR-----------------IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
             R                  D V   D G Y C  +N   +A  S    +
Sbjct: 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE----------------P 181
              +   +      + TC Y G     + W    G                         
Sbjct: 6   TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
                SV ++D G Y C++  E         + L     PP         ++  G     
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVL 124

Query: 242 KCIA-SGNPTPEISWYLDGKKLVNAER 267
            C    G+P  E SW+ DG  ++ A+ 
Sbjct: 125 TCSEHDGSPPSEYSWFKDGISMLTADA 151

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 30  GESFALLCEAQE------NMWFK----FIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKV 77
           G    L C   +        WFK     +   ++K    +N    +   SG LI      
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 78  EDSGKYLCVVNNSVGGESVETVLTVTAP 105
            DSG+Y C   N  G         + A 
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 13/46 (28%)

Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
             +  + SD  +    +    C  SG  +P + W            
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVC 47

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 57/230 (24%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK------FIEGSSRKVAVPLND 61
           + T  S    +R  +       L C           W         +   + K+     D
Sbjct: 4   SVTVHSSEPEVRIPE--NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
           RV  +   +  K    ED+G Y C+V+   G    E  + +           V       
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL----------IVLV----- 106

Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNE 180
           P                      +   G  A  TC   +G+P    +W KDG  +P + +
Sbjct: 107 PPSKP------------TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154

Query: 181 PVF----------------RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                                D +   D G Y C  RN   +   S  ++
Sbjct: 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 93.5 bits (232), Expect = 3e-23
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 19/147 (12%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------------- 181
                  I    P + +C Y G     + W  D                           
Sbjct: 9   SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
                SV +ED G Y C++  E  ++    ++KL     PP         +   G     
Sbjct: 69  GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNIPSSATIGNRAVL 127

Query: 242 KCIAS-GNPTPEISWYLDGKKLVNAER 267
            C    G+P  E +W+ DG  +    +
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPK 154

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 53.4 bits (128), Expect = 9e-09
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 30  GESFALLCEAQE------NMWFK---FIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVE 78
           G    L C  Q+        WFK    +  + +      N    +   +G L+       
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 79  DSGKYLCVVNNSVGGESVETVLTVTA 104
           D+G+Y C   N  G       + + A
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 7/47 (14%), Positives = 12/47 (25%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              +  S  +  +         C  SG  +P + W  D         
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVC 50

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 96.0 bits (239), Expect = 3e-24
 Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 17/146 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDS 187
            +P  Q +  G  A F C   G+P  +I W K+GK V                 + RI+ 
Sbjct: 11  RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70

Query: 188 VRK-EDKGMYQCVIRNEQ-ESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYF 241
           VR   D   Y+CV  N   ++  A   L +          PVI +      +  G     
Sbjct: 71  VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130

Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
            C A GNPTP I W  +  K+  +  
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNP 156

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 43/199 (21%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDS 80
           G   +  C A+ +     +W K    + G+  +  V        +   L I+  +   D 
Sbjct: 21  GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI---LRIEPVRAGRDD 77

Query: 81  GKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
             Y CV  N VG   S +  LT+                       T             
Sbjct: 78  APYECVAENGVGDAVSADATLTIY----------EGDKTPAGFPVIT------------Q 115

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED 192
            P  + I+ G     TCK  GNP   I W+K+   V   + P +       +I++ R+ED
Sbjct: 116 GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD-MSNPRYSLKDGFLQIENSREED 174

Query: 193 KGMYQCVIRNEQESAQASG 211
           +G Y+CV  N   +  +  
Sbjct: 175 QGKYECVAENSMGTEHSKA 193

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP I     ++ +  G    F C A G+P P I W  +GKK+   + 
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS 52

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
           G +  + C+A  N      W K          V +++    +  G L I+ ++ ED GKY
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIK--NQ----TKVDMSNPRYSLKDGFLQIENSREEDQGKY 178

Query: 84  LCVVNNSVG-GESVETVLTVTAP 105
            CV  NS+G   S  T L V   
Sbjct: 179 ECVAENSMGTEHSKATNLYVKVR 201

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 97.9 bits (244), Expect = 3e-24
 Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 45/211 (21%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
             +  L+C+   +      W++    I     K  +            LII     +D+ 
Sbjct: 19  QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK---GGYHQLIIASVTDDDAT 75

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            Y     N  G  S    L V  P    +  T++                          
Sbjct: 76  VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG------------------------M 111

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKE 191
                  G        + G P   I+W K    + ++             +   + V ++
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
           D G Y    +N     Q + EL +    DPP
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVADVPDPP 202

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 97.5 bits (243), Expect = 5e-24
 Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 13/142 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV-----------FRIDS 187
            E     + +   A   CK  G+P   + W + GK +                    I S
Sbjct: 9   EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIAS 68

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIA 245
           V  +D  +YQ    N+  S   +  L++    +   P   E         G     K   
Sbjct: 69  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
           SG P P I+W      + N   
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGH 150

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
            P  KE   +  +    N    C  +G+P P + WY  GK+++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 98.0 bits (243), Expect = 4e-24
 Identities = 35/263 (13%), Positives = 55/263 (20%), Gaps = 53/263 (20%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKV-------AVPLNDRVKQVSGTLIIKEAKVEDSG- 81
           GE F+  C   E+            V               +  +G L I      DS  
Sbjct: 44  GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHR 103

Query: 82  KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           +YLC V    G          +  P +   E               C             
Sbjct: 104 RYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI----------- 152

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKG 194
                                    I+W K+ + +               I +   ED G
Sbjct: 153 -----------------LYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSG 195

Query: 195 MYQCVIRNEQESAQASG------ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
            Y C +  +    +          L +    D            +  G      C A   
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVST 255

Query: 249 PTPE----ISWYLDGKKLVNAER 267
                   I W      ++  + 
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDF 278

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 83.7 bits (206), Expect = 6e-19
 Identities = 32/213 (15%), Positives = 55/213 (25%), Gaps = 50/213 (23%)

Query: 28  PGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
                  L C            W+K       +  +    +  Q    LII   ++EDSG
Sbjct: 141 HDKYGIDLYCGILYAKHYNNITWYK--NN---QELIIDGTKYSQSGQNLIIHNPELEDSG 195

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
           +Y C V+        + V++    L        +                       +  
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKL--------------------ILD 235

Query: 142 TVQTIDFGRPAQFTCKYEGNPVK----TISWMKDGKPVPDHNEPVF-------------- 183
               +  G PA  TC      +      I W      +   +  V+              
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295

Query: 184 RIDSVRKEDKGM-YQCVIRNEQESAQASGELKL 215
             ++V +E  G  Y C   N       +  + L
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 69.5 bits (169), Expect = 7e-14
 Identities = 23/157 (14%), Positives = 39/157 (24%), Gaps = 19/157 (12%)

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCK---------YEGNPVKTISWMKDGKPVPD 177
              +   P              G P    C             +    ++W K GK    
Sbjct: 22  KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81

Query: 178 HNEPVF----RIDSVRKEDKG-MYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDE 231
            N  V      I +    D    Y C +  +  +  Q      +     PP       + 
Sbjct: 82  LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHI---RKPPSCIPETYEL 138

Query: 232 TLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAER 267
             +        C I        I+WY + ++L+    
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT 175

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 96.1 bits (239), Expect = 6e-24
 Identities = 39/246 (15%), Positives = 64/246 (26%), Gaps = 58/246 (23%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            E+  L CE           WF                  +  + +  I  A V DSG+Y
Sbjct: 16  EETVTLHCEVLHLPGSSSTQWFL------------NGTATQTSTPSYRITSASVNDSGEY 63

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C    S   + ++  +                                  L   ++ + 
Sbjct: 64  RCQRGLSGRSDPIQLEIH------------------------------RGWLL--LQVSS 91

Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIR 201
           +    G P    C    +  V  + + ++GK     H      I        G Y C   
Sbjct: 92  RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGM 151

Query: 202 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI-----SWY 256
            +     A   + +   F  PV+  S +   L  G      C               S+Y
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFY 210

Query: 257 LDGKKL 262
           +  K L
Sbjct: 211 MGSKTL 216

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 84.2 bits (208), Expect = 2e-19
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 9/126 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           ++P   ++         C+    P   +  W  +G        P +RI S    D G Y+
Sbjct: 6   LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYR 64

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWY 256
           C       S     E+          +    S      G     +C A  +     + +Y
Sbjct: 65  CQRGLSGRSDPIQLEIH------RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118

Query: 257 LDGKKL 262
            +GK  
Sbjct: 119 RNGKAF 124

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 50/199 (25%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           GE  AL C A ++      ++++   G + K            +  L I +  +  +G Y
Sbjct: 97  GEPLALRCHAWKDKLVYNVLYYR--NGKAFKFFHW--------NSNLTILKTNISHNGTY 146

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C         S    +TV     A                        P L A V   +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPA------------------------PVLNASVTSPL 182

Query: 144 QTIDFGRPAQFTCKYEGNPVK-----TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQ 197
                G     +C+ +    +       S+    K +   +    ++I + R+ED G+Y 
Sbjct: 183 LE---GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYW 239

Query: 198 CVIRNEQ-ESAQASGELKL 215
           C    E     + S EL+L
Sbjct: 240 CEAATEDGNVLKRSPELEL 258

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 97.5 bits (242), Expect = 7e-24
 Identities = 47/251 (18%), Positives = 74/251 (29%), Gaps = 56/251 (22%)

Query: 44  WFKFIEGSSRKVAV-----------PLNDRV-----KQVSGTLIIKEAKVEDSGKYLCVV 87
           W K   GS + VA+           P  +RV         GT+ +   ++ED G Y+C  
Sbjct: 52  WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 111

Query: 88  NNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
                G     + LTV A       PT                              +  
Sbjct: 112 ATFPTGNRESQLNLTVMAK------PTNWIEGTQAV------------------LRAKKG 147

Query: 147 DFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKG 194
              +    TC    G P   +SW    K   ++ E             +R+   R+  + 
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQ 207

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EI 253
              C++    +  + S  L +  +++P V  E F         +    C A  NP   E 
Sbjct: 208 SLACIVNYHMDRFKESLTLNV--QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265

Query: 254 SWYLDGKKLVN 264
            W      L  
Sbjct: 266 HWTTLNGSLPK 276

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 87.5 bits (216), Expect = 3e-20
 Identities = 26/212 (12%), Positives = 49/212 (23%), Gaps = 42/212 (19%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            +     C +          W   ++G +    +   +    V     +  ++       
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSL 209

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C+VN  +        L V         P V                I            
Sbjct: 210 ACIVNYHMDRFKESLTLNVQYE------PEV---------------TIEGFDGNWYLQ-- 246

Query: 144 QTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQC 198
                    + TCK + NP      W      +P      N  +F    +     G Y C
Sbjct: 247 -----RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 301

Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFSD 230
              N   +     E+ +    +   ++     
Sbjct: 302 EATNPIGTRSGQVEVNI---TEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 22/171 (12%), Positives = 40/171 (23%), Gaps = 38/171 (22%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVPD---------- 177
            P     V  ++     G      C +        +  ++W K                 
Sbjct: 13  DPSQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71

Query: 178 -----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 220
                              +   R+  +  ED+G+Y C         +   +L L     
Sbjct: 72  VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAK 130

Query: 221 PPVIKESFSD----ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 266
           P    E        +           C ++ G P   +SW    K     +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ 181

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 90.5 bits (225), Expect = 1e-23
 Identities = 24/77 (31%), Positives = 34/77 (44%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           VEP    +  G     TC+    P   I WMKDG P+P    PV  +  +  +D+G Y C
Sbjct: 15  VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74

Query: 199 VIRNEQESAQASGELKL 215
           V  +     Q S  + +
Sbjct: 75  VATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 18/83 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G +  L CE          W K  +G    V +PL       S  LI+ E   +D G Y 
Sbjct: 25  GGTVTLTCEVPAQPSPQIHWMK--DG----VPLPLPP-----SPVLILPEIGPQDQGTYS 73

Query: 85  CVVNNSVGG--ESVETVLTVTAP 105
           CV  +S  G  ES    +++  P
Sbjct: 74  CVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.5 bits (108), Expect = 9e-07
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            +   +        + PG      C     P+P+I W  DG  L
Sbjct: 8   LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 94.2 bits (234), Expect = 2e-23
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------I 185
             PT   +    PA   CK EG P  TI W KDG+PV  + +   R             +
Sbjct: 14  EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73

Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
              +++D G Y CV +N   ++      L++         +    D  +  G     +C 
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--AVLRDDFRVEPKDTRVAKGETALLECG 131

Query: 245 -ASGNPTPEISWYLDGKKLVNAER 267
              G P P + W  DG  L + + 
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKA 155

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 81.1 bits (200), Expect = 1e-18
 Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 57/228 (25%)

Query: 8   PVGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
              +++P      +D++  K    E   L C+ +        WFK  +G         + 
Sbjct: 4   AGQYQSPRIIEHPTDLVVKK---NEPATLNCKVEGKPEPTIEWFK--DGEPVSTNEKKSH 58

Query: 62  RVKQVSGTL----IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTI 117
           RV+   G L     ++  K +D G+Y CV  N VG       ++  A L       +  +
Sbjct: 59  RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG-----QAVSRHASL------QIAVL 107

Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC-KYEGNPVKTISWMKDGKPVP 176
                  F             VEP    +  G  A   C   +G P  T+ W+KDG P+ 
Sbjct: 108 ----RDDFR------------VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151

Query: 177 DHNEPVF--------------RIDSVRKEDKGMYQCVIRNEQESAQAS 210
           D     F               I +V   D+G Y+C+ +N   + ++S
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           L G++  P I E  +D  +         C   G P P I W+ DG+ +   E+
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 44  WFK--FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETV 99
           W K        + ++   + RV+ V  G L+I   +  D G Y C+  N VG  ES    
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202

Query: 100 LTVTAP 105
           L V   
Sbjct: 203 LIVQVK 208

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 96.4 bits (239), Expect = 3e-23
 Identities = 38/266 (14%), Positives = 73/266 (27%), Gaps = 71/266 (26%)

Query: 30  GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVK-------QVSGT 69
           G++  L C A +       W                 K    LNDR         Q +  
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 70  LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
           LIIK  K+EDS  Y+C V +      +  V  +TA     +                   
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQL-LVFGLTANSDTHLLQ----------------- 110

Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
                              G+    T +       ++                  +  + 
Sbjct: 111 -------------------GQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLE 150

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE-------------SFSDETLNPG 236
            +D G + C +   Q+  +   ++ +        I               +F+ E L   
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210

Query: 237 PNYYFKCIASGNPTPEISWYLDGKKL 262
              +++   + +    I++ L  K++
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEV 236

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 31/262 (11%), Positives = 67/262 (25%), Gaps = 67/262 (25%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+S  L  E+                       P    ++    TL + + +++DSG + 
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRS-----------PRGKNIQG-GKTLSVSQLELQDSGTWT 158

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C V  +      +  + V A        ++     G   +F+                  
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQ---KASSIVYKKEGEQVEFSF------------PLAFT 203

Query: 145 TIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVP-DHNEPVFRID------------S 187
                   +   + E         T         V     +P  ++              
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
            +    G     +  +         L         V++ +   + L         C   G
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLV--------VMRATQLQKNLT--------CEVWG 307

Query: 248 NPTPEI--SWYLDGKKLVNAER 267
             +P++  S  L+ K+   ++R
Sbjct: 308 PTSPKLMLSLKLENKEAKVSKR 329

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 71.8 bits (175), Expect = 1e-14
 Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 37/145 (25%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKP--------------------------VPDHNEPV 182
           G   + TC           W    +                           + D     
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
             I +++ ED   Y C + +++E  Q          F         SD  L  G +    
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLT 117

Query: 243 CIASGNPTPEISWYLDGKKLVNAER 267
             +    +P +       K +   +
Sbjct: 118 LESPPGSSPSVQCRSPRGKNIQGGK 142

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 54.8 bits (131), Expect = 6e-09
 Identities = 18/140 (12%), Positives = 31/140 (22%), Gaps = 42/140 (30%)

Query: 66  VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
           +  TL     +   SG     +    G    E  L V                       
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNL 301

Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI 185
           TC+                                 P   +S   + K          + 
Sbjct: 302 TCEVWGPTS---------------------------PKLMLSLKLENKEAKVSKR--EKA 332

Query: 186 DSVRKEDKGMYQCVIRNEQE 205
             V   + GM+QC++ +  +
Sbjct: 333 VWVLNPEAGMWQCLLSDSGQ 352

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 89.7 bits (223), Expect = 3e-23
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           VEPT Q +  G      C   G+P+    W K+  P+    + ++ +  V  E +G Y C
Sbjct: 8   VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWC 67

Query: 199 VIRNEQESAQAS 210
            + N+++S  + 
Sbjct: 68  HVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              I    + + L PG     +C+A G+P P   W+ +   L +  +
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK 49

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G +  L C A  +      WFK          +PL     +     ++    +E  G Y 
Sbjct: 18  GSTLVLQCVAVGSPIPHYQWFK--NE------LPLTH---ETKKLYMVPYVDLEHQGTYW 66

Query: 85  CVVNNSVGGESVETVLTVTAPL 106
           C V N    +  + V  +   L
Sbjct: 67  CHVYNDRDSQDSKKVEIIIDEL 88

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 90.1 bits (223), Expect = 3e-22
 Identities = 30/216 (13%), Positives = 51/216 (23%), Gaps = 65/216 (30%)

Query: 30  GESFALLCEAQEN--------MWFKF-------IEGSSRKVAVPLNDRVKQV-------- 66
           GE   L    +           WFK        + G      + +    +          
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           +  L++  A +   G YLC +       + +  L+V  P       T+            
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTL------------ 107

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI- 185
                       V               TC     P   + W+      P        + 
Sbjct: 108 -----------SVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM 156

Query: 186 ------------DSVRKEDKGMYQCVIRNEQESAQA 209
                        S+ K       CV +N++E A  
Sbjct: 157 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 18/153 (11%), Positives = 37/153 (24%), Gaps = 15/153 (9%)

Query: 116 TIDFGRPAQFTCKYE---ISPPLAAG---VEPTVQTIDFGRPAQFTCKYEGNPVKTISWM 169
           T   G     T  +    + P +      + P  + +  GR       +   P +    +
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDI 60

Query: 170 KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
                    N     + +      G Y C ++  +        L +     P  +     
Sbjct: 61  HR-----SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSE 112

Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
                        C  +  P P + W +     
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 89.2 bits (221), Expect = 6e-22
 Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 139 VEPTVQTIDFGRPAQFTCKYE--GNPVKTISWMKDGKPVPDHNEP--------------- 181
             P   T   G      C+ +  G P   + W++DG+ +   +                 
Sbjct: 7   GNPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65

Query: 182 ---VFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGP 237
                RI S++  D G YQC++    ++     G + L G    P   E   D T+    
Sbjct: 66  VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANT 122

Query: 238 NYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
            +   C A G P P ++ W  D   L  A  
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPG 153

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 44/197 (22%)

Query: 30  GESFALLCEAQEN------MWFK------FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAK 76
           G +  L C+ Q         W +        + +  +V +  +++   +    L I   +
Sbjct: 17  GLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76

Query: 77  VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
           + D+G+Y C+V          T ++    +       ++         F           
Sbjct: 77  LSDTGQYQCLVFLGHQ-----TFVSQPGYV------GLEG-----LPYFL---------- 110

Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVP--DHNEPVFRIDSVRKEDK 193
              EP  +T+    P   +C+ +G P    + W++D  P+     + P   +        
Sbjct: 111 --EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKT 168

Query: 194 GMYQCVIRNEQESAQAS 210
             + C   N +    + 
Sbjct: 169 SSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLN-DRVKQVSGTLIIKEAKVEDSGK 82
              F L C+AQ        +W +         AVPL          +L +    +  +  
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQD--------AVPLATAPGHGPQRSLHV--PGLNKTSS 170

Query: 83  YLCVVNNSVGGESVETVLTVTAP 105
           + C  +N+ G  +  T      P
Sbjct: 171 FSCEAHNAKGVTTSRTATITVLP 193

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 91.3 bits (226), Expect = 8e-22
 Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 53/245 (21%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G++ +L C   + + + F            N+ V+      I ++A+   +G Y C  +N
Sbjct: 27  GDTLSLTCIDPDFVRWTF--------KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN 78

Query: 90  SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG 149
            +                     +   +    PA+              +          
Sbjct: 79  GLT--------------------SSIYVFVRDPAKLF------------LVGLPLFGKED 106

Query: 150 RPAQFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSV-RKEDKGMYQCVIR 201
             A   C      V   S ++ DGK +P         +    I +V R   +   +C  +
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQ 166

Query: 202 NEQESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYL 257
            +      S +  L         PV+    +   L  G  +   C      T     W  
Sbjct: 167 RDGTW-LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225

Query: 258 DGKKL 262
              + 
Sbjct: 226 MNPQP 230

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 68.6 bits (167), Expect = 1e-13
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 14/142 (9%)

Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP--VPDHNEPVFRID 186
            E SPP     +  +  ++ G     TC         + W        + ++ +  +  +
Sbjct: 8   GEPSPPSIHPAQSEL-IVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQE 62

Query: 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
                  G Y C   N   S   S  + +    DP  +             +   +C  +
Sbjct: 63  KAEATRTGTYTCSNSNGLTS---SIYVFV---RDPAKLFLVGLPLFGKEDSDALVRCPLT 116

Query: 247 GNPTPEISWY-LDGKKLVNAER 267
                + S    DGK L     
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLT 138

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 27/207 (13%), Positives = 44/207 (21%), Gaps = 49/207 (23%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
                + C   +         +      + +   L       +G  I    +        
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIEC---DGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C      G        T+    A    P V                        V  T  
Sbjct: 163 CAAQRD-GTWLHSDKFTLKVREAIKAIPVVS-----------------------VPETSH 198

Query: 145 TIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR----------------IDS 187
            +  G      C   + +      W+K         +                    I S
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELK 214
            R +D G++ C   N   SA  +  LK
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 30  GESFALLCEAQEN------MWFK-----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE 78
           G++F ++C  ++       MW K           +  +    D   +   TL I  A+V+
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262

Query: 79  DSGKYLCVVNNSVGGESVETVLTV 102
           DSG ++C  NN+ G  +V T L V
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKV 286

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 88.5 bits (219), Expect = 1e-21
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 33/202 (16%)

Query: 30  GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
                   +A++        +        EG   K+ +  N  +      + +++ + ED
Sbjct: 17  KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFMEKLQDED 72

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
            G Y   + +         VL          E   Q  ++ R            P    V
Sbjct: 73  EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------QGPHF--V 121

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
           E     +         CK      +T I W KD + +    +  F        I    K+
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181

Query: 192 DKGMYQCVIRNEQESAQASGEL 213
           D G+Y+ ++++++   ++  +L
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 30/157 (19%)

Query: 140 EPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHNEPVFR-----------IDS 187
                 I      +F  + E  +    ++++ + K + +  +               ++ 
Sbjct: 8   SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67

Query: 188 VRKEDKGMYQCVIRNEQESAQAS----------------GELKLGGRFDPPVIKESFSDE 231
           ++ ED+G Y   +++ + +  ++                 + +   R   P   E +   
Sbjct: 68  LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSW 126

Query: 232 TLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
            +    N   KC  +       I WY D +++   E+
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK 163

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSG 81
             +  L C+          +W+K       +  + ++++     G  TL+I E   +D+G
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYK------DEREISVDEKHDFKDGICTLLITEFSKKDAG 184

Query: 82  KYLCVVNNSVGGESVETVLTVTA 104
            Y  ++ +  G +     L   A
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDEA 207

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR------------- 184
             P+   +  G PA   CK EG P  TI W K G+ V  D ++P                
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73

Query: 185 --IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
                  + D+G+Y CV RN   E+      L++         +++ SD  +  G     
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPAVM 131

Query: 242 KCIA-SGNPTPEISWYLDGKKLVNAER 267
           +C    G+P P ISW  DG  L + + 
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDE 158

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 49/206 (23%), Positives = 71/206 (34%), Gaps = 60/206 (29%)

Query: 30  GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVKQVSGTLII---- 72
           GE   L C+A+        W+K          +  S ++ +P        SG+L      
Sbjct: 24  GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP--------SGSLFFLRIV 75

Query: 73  -KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
                  D G Y+CV  N +G       ++  A L       V  +       F      
Sbjct: 76  HGRKSRPDEGVYVCVARNYLG-----EAVSHDASL------EVAIL----RDDFR----- 115

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------R 184
                    P+   +  G PA   C+   G+P  TISW KDG P+ D +E +        
Sbjct: 116 -------QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM 168

Query: 185 IDSVRKEDKGMYQCVIRNEQESAQAS 210
           I   RK D G Y CV  N     ++ 
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESE 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP I E  SD  ++ G      C A G PTP I WY  G+++   + 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 30  GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGK 82
           GE   + C+           W K  +G      +   D    +  G L+I   +  D+GK
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKK--DG----SPLDDKDERITIRGGKLMITYTRKSDAGK 179

Query: 83  YLCVVNNSVGG-ESVETVLTVTAP 105
           Y+CV  N VG  ES    LTV   
Sbjct: 180 YVCVGTNMVGERESEVAELTVLER 203

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 89.9 bits (222), Expect = 9e-21
 Identities = 34/243 (13%), Positives = 64/243 (26%), Gaps = 42/243 (17%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
                ++C                +        V   +       ++ +     ED G  
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT---AEDEGTQ 259

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
                  +G +S ET+ TVT                         Y    P     +P V
Sbjct: 260 RLTCAVILGNQSQETLQTVTI------------------------YSFPAPNVILTKPEV 295

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
                G      C+       T++ +      P        + +  +++   + C    E
Sbjct: 296 SE---GTEVTVKCEAHPRAKVTLNGVPAQPLGP---RAQLLLKATPEDNGRSFSCSATLE 349

Query: 204 --QESAQASGELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
              +    +   +L   + P + +     + T          C A GNP PE+    DG 
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409

Query: 261 KLV 263
             +
Sbjct: 410 FPL 412

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 78.8 bits (193), Expect = 6e-17
 Identities = 29/192 (15%), Positives = 48/192 (25%), Gaps = 50/192 (26%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
           G    + CEA                                 L++K    ++   + C 
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGP------------RAQLLLKATPEDNGRSFSCS 345

Query: 87  VNNSVGGESV----ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
               V G+ +       L V                              P L     P 
Sbjct: 346 ATLEVAGQLIHKNQTRELRVLYG---------------------------PRLDERDCPG 378

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
             T          C+  GNP+  +  +KDG        P+    +V ++ +G Y C  R+
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRARS 434

Query: 203 EQESAQASGELK 214
            Q        + 
Sbjct: 435 TQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 32/249 (12%), Positives = 64/249 (25%), Gaps = 46/249 (18%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G S  + C    +           +  +P  + +   +   + + + V++  + +C  N 
Sbjct: 14  GGSVLVTCSTSCDQ----PMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69

Query: 90  SVGGESVETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
             G  + +T LTV   P    + P       G+     C+ E   P              
Sbjct: 70  PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR------------- 116

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRN 202
                           T+  ++  K +          E    +   R      + C    
Sbjct: 117 -------------ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163

Query: 203 EQESA------QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEI 253
           +            S   +L     P    +  S   L         C   G       ++
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223

Query: 254 SWYLDGKKL 262
              L  ++L
Sbjct: 224 HLALGDQRL 232

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 65.3 bits (158), Expect = 2e-12
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKG 194
           V P+   +  G     TC    +    +       K    +P +N  V+ + +V+++   
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQED--S 61

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTP 251
              C        + A   L +   + P  ++ +        G N   +C   G       
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119

Query: 252 EISWYLDGKKLVN 264
            +      K+L  
Sbjct: 120 TVVLLRGEKELKR 132

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 20/98 (20%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
            P          +  P       +C+A  N        K  +G+                
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--DGT-------------FPL 412

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
                     +  G YLC   ++ G  + E  + V +P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 85.1 bits (210), Expect = 2e-20
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS--WMKDGKPVPDHNEP--VFRIDSVRKED 192
           A         D G     TC    +  +     W+K G  + +   P           + 
Sbjct: 1   AAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQ 60

Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TP 251
            G Y CV   E     A+ +L       PP +K   S E +N G      C +   P   
Sbjct: 61  WGEYSCVFLPE-PMGTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114

Query: 252 EISWY 256
           + +WY
Sbjct: 115 DWAWY 119

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 35/209 (16%), Positives = 54/209 (25%), Gaps = 65/209 (31%)

Query: 30  GESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82
           G    L C   ++        W K   G      V L +           K    +  G+
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLK--GG------VVLKEDALP-GQKTEFKVDSDDQWGE 63

Query: 83  YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
           Y CV      G +                     I    P +                 +
Sbjct: 64  YSCVFLPEPMGTA--------------------NIQLHGPPRVK------------AVKS 91

Query: 143 VQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPV---------------PDHNEPVFRID 186
            + I+ G  A   CK E  P V   +W K                             I+
Sbjct: 92  SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE 151

Query: 187 SV-RKEDKGMYQCVIRNEQESAQASGELK 214
           ++  + D G Y+C   + + S QA   L+
Sbjct: 152 NLNMEADPGQYRCNGTSSKGSDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVE- 78
           GE+  L+C+++         W+K  +   + +      R    S      L I+   +E 
Sbjct: 98  GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157

Query: 79  DSGKYLCVVNNSVGGESVETVLTV 102
           D G+Y C   +S G +     L V
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITLRV 181

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 84.7 bits (209), Expect = 5e-20
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 35/163 (21%)

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
            ++ VK    ++ +   ++ D G Y C V  + G  + + +LTV    +        + +
Sbjct: 75  TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE 134

Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-- 176
            G   +  C+ +                            EG+      W K        
Sbjct: 135 IGNDFKLKCEPK----------------------------EGSLPLQFEWQKLSDSQTMP 166

Query: 177 -----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                +   PV  + +   E  G Y C ++N   S Q    L 
Sbjct: 167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 18/177 (10%)

Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT---VQTIDFGRPAQFTC 156
           L++T P              G  A   CK+ +SP     ++       + +         
Sbjct: 1   LSITTP------EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54

Query: 157 KYEGNPVKTISWMKDG-----KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211
                          G            +    + +++  D G YQC ++     A    
Sbjct: 55  YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114

Query: 212 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAER 267
            L +      P     F D +   G ++  KC    G+   +  W            
Sbjct: 115 LLTVLV---KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 56.2 bits (135), Expect = 8e-10
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 30  GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G  F L CE +E        W K     S    +P     +  S  + +K A  E SG Y
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 191

Query: 84  LCVVNNSVGGESVETVLTVTAP 105
            C V N VG +     L V  P
Sbjct: 192 SCTVQNRVGSDQCMLRLDVVPP 213

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 83.2 bits (205), Expect = 4e-19
 Identities = 35/244 (14%), Positives = 62/244 (25%), Gaps = 44/244 (18%)

Query: 30  GESFALLCEAQ------ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
                ++C         E      +        V   +       ++ +  A+ E + + 
Sbjct: 18  DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRL 76

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C V      +     +T+                          Y    P     +P V
Sbjct: 77  TCAVILGNQSQETLQTVTI--------------------------YSFPAPNVILTKPEV 110

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGM-YQCVIRN 202
                G      C  E +P        +G P          +     ED G  + C    
Sbjct: 111 SE---GTEVTVKC--EAHP--RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATL 163

Query: 203 E--QESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
           E   +    +   +L   + P + +     + T          C A GNP PE+    DG
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223

Query: 260 KKLV 263
              +
Sbjct: 224 TFPL 227

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 77.8 bits (191), Expect = 4e-17
 Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 38/185 (20%)

Query: 30  GESFALLCEAQEN-MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
           G    + CEA           G   +   P           L++K    ++   + C   
Sbjct: 113 GTEVTVKCEAHPRAKVTL--NGVPAQPLGP--------RAQLLLKATPEDNGRSFSCSAT 162

Query: 89  NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
             V G+ +    T    L     P +   D                      P   T   
Sbjct: 163 LEVAGQLIHKNQTRE--LRVLYGPRLDERD---------------------CPGNWTWPE 199

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
                  C+  GNP+  +  +KDG        P+    +V ++ +G Y C  R+ Q    
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKDGTFP----LPIGESVTVTRDLEGTYLCRARSTQGEVT 255

Query: 209 ASGEL 213
               +
Sbjct: 256 REVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 20/98 (20%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
            P          +  P       +C+A  N        K  +G+                
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--DGT-------------FPL 227

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
                     +  G YLC   ++ G  + E  + V +P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.7 bits (208), Expect = 8e-19
 Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 33/228 (14%)

Query: 57  VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
             L +  +  +  + I +   +DSG+Y C +  +  G S +  L V+       +  V T
Sbjct: 64  ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123

Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
           +D GR     C ++                      +   K  G     +          
Sbjct: 124 VDLGRTVTINCPFKTENA------QKR---------KSLYKQIGLYPVLVIDSSGYVNPN 168

Query: 176 -----------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
                               I+ +R  D G Y C   ++  S + + +L++       V 
Sbjct: 169 YTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY 228

Query: 225 KESFSDETLN------PGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
           ++     T +            F C  S     ++     GK+    E
Sbjct: 229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 77.3 bits (189), Expect = 3e-16
 Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 21/266 (7%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRV------KQV 66
                SV+               LC          +  +  K A     R+      K  
Sbjct: 229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG 288

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT----VTAPLAAGVEPTVQTIDFGRP 122
           S +++I   + ED+G+YLC  ++    +    +      V         PTV     G  
Sbjct: 289 SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS 348

Query: 123 AQFTCKYEISPPLAAGVEPTVQT-IDFGRPAQFTCKYEGNPVKTISWMKDGK----PVPD 177
               C Y            +++    +       C    +    +    +G+      P 
Sbjct: 349 VAVLCPYNRKES------KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402

Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
           +      ++ +   D G Y C+   +           + G  +  V     +        
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV 462

Query: 238 NYYFKCIASGNPTPEISWYLDGKKLV 263
             +F C  S        W   G + +
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQAL 488

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 42/168 (25%)

Query: 57  VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
           + L +     + T+I+ +    D+G Y C+ N           + +         P   T
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKIIEGEPNLKVPGNVT 453

Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
              G   +  C +                          CK+         W   G    
Sbjct: 454 AVLGETLKVPCHFP-------------------------CKFSSYEKYWCKWNNTGCQAL 488

Query: 176 -------------PDHNEPVF--RIDSVRKEDKGMYQCVIRNEQESAQ 208
                         D N  +    ++ V + D+G Y C ++      +
Sbjct: 489 PSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGE 536

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 67  SGTLIIKEAKVEDSGKYLCVV-NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
             +L +      D G Y C V      GE+    + V    AAG      ++     A  
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV--SLAKADAAPD 565

Query: 126 TCKYE 130
               +
Sbjct: 566 EKVLD 570

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.4 bits (198), Expect = 1e-18
 Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 58/205 (28%)

Query: 30  GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVK-------QVSGT 69
           G++  L C A +       W                 K    LNDR         Q +  
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 70  LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
           LIIK  K+EDS  Y+C V +    E    V  +TA                         
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQK-EEVQLLVFGLTAN------------------------ 104

Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
                           +  G+    T +       ++                  +  + 
Sbjct: 105 ---SD---------THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLE 151

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
            +D G + C +   Q+  +   ++ 
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 75.0 bits (184), Expect = 9e-17
 Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 37/145 (25%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDG--------------------------KPVPDHNEPV 182
           G   + TC           W                              + + D     
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
             I +++ ED   Y C + +++E  Q          F         SD  L  G +    
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLT 118

Query: 243 CIASGNPTPEISWYLDGKKLVNAER 267
             +    +P +       K +   +
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK 143

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+S  L  E+                           +  Q   TL + + +++DSG + 
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSP------------RGKNIQGGKTLSVSQLELQDSGTWT 159

Query: 85  CVVNNSVGGESVETVLTVTA 104
           C V  +      +  + V A
Sbjct: 160 CTVLQNQKKVEFKIDIVVLA 179

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK              +      ++SV
Sbjct: 13  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
              DKG Y CV+ NE  S   +  L 
Sbjct: 73  VPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 12  KAPTFSSVSDIIR--FKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLND 61
           +AP +++   + +     P   +    C A  N      W K     +   R        
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY---- 58

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
           +V+    +LI++     D G Y CVV N  G  +    L V
Sbjct: 59  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 229 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
               +       F+C A GNP P + W  +GK+     R
Sbjct: 16  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 54

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 81.3 bits (200), Expect = 5e-18
 Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 15/137 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV--------FRIDSVRK 190
           V+    ++D G      C+ EG  ++   W+                        +    
Sbjct: 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD 222

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
            ++    C   N+   A+ S ++             S    T     ++       G P 
Sbjct: 223 LNRKNVTCWAENDVGRAEVSVQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQPA 275

Query: 251 PEISWYLDGKKLVNAER 267
           P + W  +G  L     
Sbjct: 276 PSLRWLFNGSVLNETSF 292

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.6 bits (180), Expect = 3e-15
 Identities = 27/214 (12%), Positives = 49/214 (22%), Gaps = 60/214 (28%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+   L C+ +        W         + A  +        G  +       +     
Sbjct: 173 GDDVLLRCQVEGRGLEQAGWIL---TELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVT 229

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   N VG   V   + V+ P                                     + 
Sbjct: 230 CWAENDVGRAEVSVQVNVSFP---------------------------------ASVQLH 256

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------------VFRIDSV 188
           T             +G P  ++ W+ +G  + + +                    R++  
Sbjct: 257 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 316

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
              + G Y  +  N    A AS         D P
Sbjct: 317 THVNNGNYTLLAANPFGQASASIMAAF---MDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
             P +K    + +++ G +   +C   G    +  W L   +   
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA 201

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 79.6 bits (195), Expect = 7e-18
 Identities = 19/177 (10%), Positives = 33/177 (18%), Gaps = 50/177 (28%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           + TL +     +D G+Y C V                                 +     
Sbjct: 89  APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLD--------------------AKSVVLK 128

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
                           V  +D G     TC         ++W        ++    +   
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188

Query: 184 ---------------------------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
                                       I + +  D G   C +   Q    A    
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 67.6 bits (164), Expect = 2e-13
 Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 24/188 (12%)

Query: 98  TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA-------GVEPTVQTIDFGR 150
           +++TV          T   +  G   +  C Y+++            G  P   T  F  
Sbjct: 1   SIMTVRTT------HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54

Query: 151 PAQFTCKYEGNPVKTISWMKDGK-----PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 205
              +  +  G           G       V +   P  R+  V  +D G Y C +     
Sbjct: 55  NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114

Query: 206 S-----AQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
                    S  LK+ G      V   +     ++ G +    C  +      ++WY   
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP 174

Query: 260 KKLVNAER 267
               N E 
Sbjct: 175 TFFENYET 182

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 45.3 bits (106), Expect = 8e-06
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
           +  L+I+ AK+ D+G+  C +    G    +   T+
Sbjct: 212 ARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 77.6 bits (191), Expect = 9e-18
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           +EP    +        TC+   +P   +I W  +G  +P H +P          D G Y 
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSGEYT 67

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWY 256
           C       S        L   F+  V+           G     +C +  +    +++++
Sbjct: 68  CQTGQTSLSDPVH----LTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121

Query: 257 LDGKKL 262
            +GK  
Sbjct: 122 QNGKSQ 127

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 52/183 (28%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            +S  L C+   +       WF    G+           +   +      +A   DSG+Y
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFH--NGNL----------IPTHTQPSYRFKANNNDSGEY 66

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C    +   + V   LTV        E  V                +  P     E   
Sbjct: 67  TCQTGQTSLSDPVH--LTVL------FEWLV----------------LQTPHLEFQE--- 99

Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIR 201
                G      C    + P+  +++ ++GK     H +P F I        G Y C   
Sbjct: 100 -----GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154

Query: 202 NEQ 204
              
Sbjct: 155 IGY 157

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           GE+  L C + ++       +F+   G S+K +            T  I +A    SG Y
Sbjct: 100 GETIMLRCHSWKDKPLVKVTFFQ--NGKSQKFSHL--------DPTFSIPQANHSHSGDY 149

Query: 84  LCVVNNSVGGESVETV-LTV 102
            C  N      S + V +TV
Sbjct: 150 HCTGNIGYTLFSSKPVTITV 169

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDK 193
           P  QT+     A   CK  G+P+  ISW+K+G   P  +           +I ++R  D 
Sbjct: 15  PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74

Query: 194 GMYQCVIRNEQESAQASGEL 213
           G Y CV  +       S  L
Sbjct: 75  GTYTCVATSSSGETSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP+I +  +++TL        KC A+G+P P ISW  +G      + 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP 54

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGK 82
             +  L C+A  +      W K  EG       P  D    +   GTL IK  ++ D+G 
Sbjct: 23  DGTALLKCKATGDPLPVISWLK--EG----FTFPGRDPRATIQEQGTLQIKNLRISDTGT 76

Query: 83  YLCVVNNSVGGESVETVLTVTA 104
           Y CV  +S G  S   VL VT 
Sbjct: 77  YTCVATSSSGETSWSAVLDVTE 98

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 19/149 (12%)

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD------GKPVPDHNEP 181
           K E +P      +        G     TC   G      SW         GK   +    
Sbjct: 2   KIETTPESRYLAQI-------GDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS 54

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
              ++ V   ++  Y C    E    +   ++++      P I  S     L  G     
Sbjct: 55  TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS---GPLEAGKPITV 111

Query: 242 KCIASGN---PTPEISWYLDGKKLVNAER 267
           KC  +        EI        + + E 
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEF 140

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 25/226 (11%), Positives = 52/226 (23%), Gaps = 60/226 (26%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+S +L C           W   I+              +  + TL +      +   YL
Sbjct: 16  GDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-----VTNEGTTSTLTMNPVSFGNEHSYL 70

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C              + + +            ++ G+P    C         A V P   
Sbjct: 71  CTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS-------VADVYPF-- 121

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-------------VFRIDSVRKE 191
                                I  +K    +                         V ++
Sbjct: 122 -----------------DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED 164

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
              +  C         +A  +L +      P ++++  +  +   P
Sbjct: 165 IGKVLVC---------RA--KLHIDEMDSVPTVRQAVKELQVYISP 199

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.2 bits (185), Expect = 2e-17
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 8/106 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
             P  QT+        +C   G+PV TI W KDG  V   +  +        +I   +  
Sbjct: 13  QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLG 72

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
           D G Y C+       A  S  +++      PV     +D  L P  
Sbjct: 73  DTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPPRPTDPNLIPSA 117

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
             +F L C A  +     +W K  +G    +    + R+KQ+ +G L I+ AK+ D+G+Y
Sbjct: 23  DGTFVLSCVATGSPVPTILWRK--DG---VLVSTQDSRIKQLENGVLQIRYAKLGDTGRY 77

Query: 84  LCVVNNSVGGESVETVLTVTAP 105
            C+ +   G  +    + V   
Sbjct: 78  TCIASTPSGEATWSAYIEVQEF 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PPVI++   ++T+     +   C+A+G+P P I W  DG  +   + 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS 54

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 22/147 (14%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------- 183
               V T+D G      C ++      +  ++      +++  +                
Sbjct: 7   APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGK 66

Query: 184 ---RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
               I SV+  D G Y+C++            +K+   +     +               
Sbjct: 67  ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG----TGEVQ 122

Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
             C A G P  E+SW         +  
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPANTSHI 149

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEP---VFRIDSV 188
             P   T+  G+  +  CK  G P   +SW  DGKPV           E       I+ V
Sbjct: 14  QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPV 73

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
              D G+Y C+  N       S EL +  +   P
Sbjct: 74  TSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P   ++  D T+  G      C  SG PTP++SW LDGK +     
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA 55

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 13  APTFSSV-SDIIRFKKPGGESFALLCEAQ-----ENMWFKF----IEGSSRKVAVPLNDR 62
            P F     D+   +   G+   + C+       +  W          S+ K+ V  N  
Sbjct: 9   RPHFLQAPGDLTVQE---GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 63  VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
                 +LII+     D+G Y C+  N  G  S    L V A 
Sbjct: 66  -----HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 72.8 bits (179), Expect = 1e-16
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVR 189
            +P   T+  G  A+F+C  +G PV T++W++ G+ +             +  F I SV+
Sbjct: 19  TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 78

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
             D+G Y  V+ N +   +A   L 
Sbjct: 79  ASDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              I       T+  G +  F C   G P P ++W   G+ L  + R
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 13/81 (16%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           GES    C+          W +    +  S+R               T  I   +  D G
Sbjct: 29  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY-----KSTFEISSVQASDEG 83

Query: 82  KYLCVVNNSVGGESVETVLTV 102
            Y  VV NS G +  E  LT+
Sbjct: 84  NYSVVVENSEGKQEAEFTLTI 104

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPV 182
             E + P    VE     +  G   Q  C+   +   +I+W++DG  + + N        
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLVESNRTRITGEE 61

Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
             +      D G+Y CV  +   S      +
Sbjct: 62  VEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 30  GESFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           G+   L C  ++++    W +        V +  ++R +     + ++++   DSG Y C
Sbjct: 24  GDLLQLRCRLRDDVQSINWLR------DGVQLVESNRTRITGEEVEVRDSIPADSGLYAC 77

Query: 86  VVNNSVGGESVETVLTVT 103
           V ++  G ++    + V+
Sbjct: 78  VTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           P  +        ++PG     +C         I+W  DG +LV + R
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 74.2 bits (182), Expect = 2e-16
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           + P    I  G     TC       V +  W  +G    + N     I + + ED G Y+
Sbjct: 9   LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS-SLNIVNAKFEDSGEYK 67

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWY 256
           C  +   ES      + L    D  ++    S E +  G   + +C    N    ++ +Y
Sbjct: 68  CQHQQVNESE----PVYLEVFSDWLLL--QASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121

Query: 257 LDGKKL 262
            DG+ L
Sbjct: 122 KDGEAL 127

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 70.3 bits (172), Expect = 4e-15
 Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 53/194 (27%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           GE+  L C            WF    GS            ++ + +L I  AK EDSG+Y
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFH--NGS----------LSEETNSSLNIVNAKFEDSGEY 66

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C        E V   +     L                                ++ + 
Sbjct: 67  KCQHQQVNESEPVYLEVFSDWLL--------------------------------LQASA 94

Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIR 201
           + +  G+P    C    N  V  + + KDG+ +    E     I +   ED G Y C  +
Sbjct: 95  EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK 154

Query: 202 NEQESAQASGELKL 215
             Q     S  L +
Sbjct: 155 VWQ-LDYESEPLNI 167

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 17/83 (20%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G+   L C    N      +++K  +G + K            +  + I  A VEDSG Y
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYK--DGEALKYWYE--------NHNISITNATVEDSGTY 149

Query: 84  LCVVNNSVGGESVETV-LTVTAP 105
            C           E + +TV   
Sbjct: 150 YCTGKVWQLDYESEPLNITVIKA 172

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 76.4 bits (187), Expect = 2e-16
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 37/207 (17%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT---APLAAGVEPTVQTIDFGRPA 123
           + TL + +A  E++G Y   V ++    SVE+ + +      +    EP    +      
Sbjct: 51  TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110

Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
           +       +   + G  P                   N     SW K    +        
Sbjct: 111 ELHA----TVKFSGGKTPA-----------------DNYELHYSWSKGEDVIDTT--QDI 147

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            I     +  G+Y   +  E E + AS   K+       V ++    +T+  G       
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA-TMNVDQDVVESKTVALGNEISLNY 206

Query: 244 IASG----------NPTPEISWYLDGK 260
           + S           N T + +WYL  +
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQRE 233

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 66.4 bits (161), Expect = 6e-13
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 13/133 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVK----TISWMKDGKPVPDHNEPVFRIDSVRKEDKG 194
           ++   +    G     T    G+       T +W KD +P  ++      +     E+ G
Sbjct: 7   IQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA-TLTVADATSENAG 65

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC---IASGNPTP 251
            Y+  +++         E+ L    +  V         ++   +         + G    
Sbjct: 66  SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125

Query: 252 EI-----SWYLDG 259
           +      SW    
Sbjct: 126 DNYELHYSWSKGE 138

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 64.8 bits (157), Expect = 2e-12
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ--TI 117
            + V   +  + I+E   + +G Y   V       +      +        +  V+  T+
Sbjct: 137 GEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTV 196

Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD 177
             G                +   P + TI +     +  + EG    T+   + G+ +  
Sbjct: 197 ALGNEISLNYVVSEDIVGDSSGMPNL-TIKY----NWYLQREGQLSPTLIGSEVGEALEG 251

Query: 178 HN---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
            +   +     +S   +D   + CV +  Q+    + E+
Sbjct: 252 FSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 36/156 (23%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           +G+L+ +   ++D G Y   + +     +  TV                        +F 
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATV------------------------RFH 105

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HN 179
               ++ P    ++ T  T+        TC         I W+ + + +          N
Sbjct: 106 VHQPVTQP---FLQVTNTTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQN 161

Query: 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
             + RID +++ED G YQC I N   S + S  +KL
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKL 196

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 62.4 bits (151), Expect = 6e-12
 Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 27/154 (17%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------------------H 178
           +E     +                +   +W K      D                     
Sbjct: 4   IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63

Query: 179 NEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL 233
            E ++         +  +D G+Y   + +E         ++              ++ T+
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTV 122

Query: 234 NPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
               +    C++  +    I W  + + L   ER
Sbjct: 123 KELDSVTLTCLS-NDIGANIQWLFNSQSLQLTER 155

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSGKY 83
            +S  L C + +      W           ++ L +R+        L I   K ED+G+Y
Sbjct: 125 LDSVTLTCLSNDIGANIQWLF------NSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178

Query: 84  LCVVNNSVGGESVETV-LTVTAP 105
            C ++N V      ++ L +   
Sbjct: 179 QCEISNPVSVRRSNSIKLDIIFD 201

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
            P   +ID GR  +   K  G P   +SW  +G+ V           +        + VR
Sbjct: 11  VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
             D G Y CV +N    A  + +L 
Sbjct: 71  ASDAGAYACVAKNRAGEATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP   +   + +++ G         SG P P++SWYL+G+ + + + 
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL 51

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%)

Query: 30  GESFALLCEAQ-----ENMWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
           G    +  +       +  W+            K+ V           +LI +  +  D+
Sbjct: 20  GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH-----SLIFEVVRASDA 74

Query: 81  GKYLCVVNNSVGGESVETVLTVTA 104
           G Y CV  N  G  +    L V A
Sbjct: 75  GAYACVAKNRAGEATFTVQLDVLA 98

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 72.2 bits (177), Expect = 5e-16
 Identities = 32/150 (21%), Positives = 44/150 (29%), Gaps = 33/150 (22%)

Query: 75  AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
           +  + SG       N+   E+ +  L   A     V+P            FT        
Sbjct: 5   SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKP-----------YFT-------- 45

Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFR 184
                      +  G  A+F CK EG P   + W KD  PV           +       
Sbjct: 46  ----KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101

Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGELK 214
           I  V  +D   Y C   N    A  + EL 
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIA 245
             +         +  N+ E+  A  E     +    P   ++  D  +  G    F C  
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
            G P PE+ W+ D   +  +  
Sbjct: 66  EGYPDPEVMWFKDDNPVKESRH 87

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 18/50 (36%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
           +L I E   +D  KY C   NS+G  +    L V      G        D
Sbjct: 99  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEED 148

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 73.3 bits (180), Expect = 7e-16
 Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSV 188
            P       G     TC+    P  TISW +DG+ +P  N                +   
Sbjct: 24  GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD 83

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES 227
            + D G Y C   N          L        P I + 
Sbjct: 84  SENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVK 64
           AP       +  ++   G    + CE          WF+    +  S+          +K
Sbjct: 19  APKLQGPVAVYTWE---GNQVNITCEVFAYPSATISWFRDGQLLPSSNYS-------NIK 68

Query: 65  QVSG----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT----APLAAGVEPTVQT 116
             +      L +      D G Y C   N +G ES+E +L       +P    VEP   T
Sbjct: 69  IYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSST 128

Query: 117 I 117
            
Sbjct: 129 A 129

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            P ++          G      C     P+  ISW+ DG+ L
Sbjct: 19  APKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 74.1 bits (181), Expect = 8e-16
 Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 30/175 (17%)

Query: 57  VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
             L        G+L++++ +  D G Y C +        ++  + +        EP    
Sbjct: 73  SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE---EPRDLR 129

Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP 176
           +  G   Q  C  + +          V  +++     F+          +S+  + +   
Sbjct: 130 VRVGDTTQMRCSIQSTEE------KRVTKVNW----MFSSGSHTEEETVLSYDSNMRSGK 179

Query: 177 DHNEPVFR-----------------IDSVRKEDKGMYQCVIRNEQESAQASGELK 214
             +   FR                 + +V++ D+G+Y C I   +  ++ +  L 
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 64.9 bits (157), Expect = 2e-12
 Identities = 28/164 (17%), Positives = 44/164 (26%), Gaps = 41/164 (25%)

Query: 139 VEPTVQTIDFGRPAQFTCKY---EGNPVKTISWMK---------------DGKPVPD--- 177
           V      +  G      C     E   V  + W+                    VP    
Sbjct: 10  VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRF 69

Query: 178 -----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
                      HN+    +  V+K D+G+Y C IR + ES      ++L       V+ E
Sbjct: 70  QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------WVLPE 123

Query: 227 SFSDETLNPGPNYYFKCIASGNPTPE---ISWYLDGKKLVNAER 267
              D  +  G     +C            ++W          E 
Sbjct: 124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET 167

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 24  RFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
                  E   +L         KF      +  V L   + +  G++ ++  K  D G Y
Sbjct: 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY 216

Query: 84  LCVVNNSVGGESVETVLTVT-APLAAGVEPTVQT 116
            C +           VL V        + PT  T
Sbjct: 217 TCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 72.6 bits (178), Expect = 9e-16
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 55/210 (26%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            +S  L C+   +       WF                 +   + +  I  A V+DSG+Y
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFH------------NESLISSQASSYFIDAATVDDSGEY 69

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C    S   + V+  L V           +                +  P     E   
Sbjct: 70  RCQTQLSTLSDPVQ--LEVHIG------WLL----------------LQAPRWVFKE--- 102

Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIR 201
                  P    C    N  +  ++++++GK     H+   F I     +D G Y C   
Sbjct: 103 -----EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL 157

Query: 202 NEQESAQASGELKL--GGRFDPPVIKESFS 229
              ++  +S  +++          I   F 
Sbjct: 158 VGSKN-VSSETVQITITQGLAVSTISSFFP 186

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           +EP    +         C+   +P  ++  W  +   +       + ID+   +D G Y+
Sbjct: 12  LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEYR 70

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWY 256
           C  +    S      ++L       ++               + +C +  N    ++++ 
Sbjct: 71  CQTQLSTLSD----PVQLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 257 LDGKKL 262
            +GK  
Sbjct: 125 QNGKGR 130

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 9/127 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           +EP   ++         C+   +P   +  W  +   +       + ID+    D G Y+
Sbjct: 12  LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYR 70

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWY 256
           C       S        L       ++               + +C +       ++++ 
Sbjct: 71  CQTNLSTLSDPVQ----LEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 257 LDGKKLV 263
            +GK   
Sbjct: 125 QNGKDRK 131

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 70.7 bits (173), Expect = 3e-15
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 53/194 (27%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            +S  L C+   +       WF                 +   + +  I  A V DSG+Y
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFH------------NESLISSQASSYFIDAATVNDSGEY 69

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C  N S   + V+  L V                                L        
Sbjct: 70  RCQTNLSTLSDPVQ--LEVHIG---------------------------WLLLQAPRWVF 100

Query: 144 QTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIR 201
           +      P    C  ++   +  ++++++GK     H+   F I     +D G Y C   
Sbjct: 101 KE---EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGL 157

Query: 202 NEQESAQASGELKL 215
              ++  +S  + +
Sbjct: 158 VGSKN-VSSETVNI 170

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RID 186
           S   ++GVE     +  G   Q  C+   +   +I+W++DG  + + N          + 
Sbjct: 2   SSG-SSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEEVEVQ 59

Query: 187 SVRKEDKGMYQCVIRNEQESAQASGEL 213
                D G+Y CV  +   S      +
Sbjct: 60  DSVPADSGLYACVTSSPSGSDTTYFSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           G+   L C  +++     W +  +G    V +  ++R +     + ++++   DSG Y C
Sbjct: 18  GDLLQLRCRLRDDVQSINWLR--DG----VQLAESNRTRITGEEVEVQDSVPADSGLYAC 71

Query: 86  VVNNSVGGESVETVLTVTAPLAAG 109
           V ++  G ++    + V+  L +G
Sbjct: 72  VTSSPSGSDTTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
                        ++PG     +C    +    I+W  DG +L  + R
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNR 48

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKE 191
                QT   G   + +C   GNP   I W KD + + +              I  VRKE
Sbjct: 15  GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 74

Query: 192 DKGMYQCVIRNEQESAQASGELK 214
           D+G+Y C   +    A+      
Sbjct: 75  DEGLYTCQACSVLGCAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSGK 82
           GES  + C A  N     MWFK  +       +  +  +    G   L I+  + ED G 
Sbjct: 25  GESIEVSCTASGNPPPQIMWFK--DNE----TLVEDSGIVLKDGNRNLTIRRVRKEDEGL 78

Query: 83  YLCVVNNSVGGESVETVLTVTAP 105
           Y C   + +G   VE    +   
Sbjct: 79  YTCQACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I  +  ++T + G +    C ASGNP P+I W+ D + LV    
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG 56

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKED 192
                  +  G+     C   G PV  I+W+ +G+P+       +       I     ED
Sbjct: 16  SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPED 75

Query: 193 KGMYQCVIRNEQESAQASGELK 214
            G Y C+  N       S  + 
Sbjct: 76  HGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            P       D  +  G ++  +C   G P P I+W L+G+ +
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPL-NDRVKQVSG--TLIIKEAKVEDSG 81
           G+ F L C  +        W     G       P+   R    +G   L I++A  ED G
Sbjct: 26  GQDFVLQCSVRGTPVPRITWLL--NGQ------PIQYARSTCEAGVAELHIQDALPEDHG 77

Query: 82  KYLCVVNNSVGGESVETVLTV 102
            Y C+  N++G  S    +TV
Sbjct: 78  TYTCLAENALGQVSCSAWVTV 98

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 50/211 (23%)

Query: 7   KPVGFKAPTFSSVSDI--IRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVK 64
           + +    P+F    DI  I+++K   +              K  +    K      D  K
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKK-------------KIAQFRKEKETFKEKDTYK 61

Query: 65  QVS-GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
               GTL IK  K +D   Y   + ++ G   +E +  +                     
Sbjct: 62  LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-------------------- 101

Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
                  I   ++   +P +           TC+        ++  +DGK +        
Sbjct: 102 -------IQERVS---KPKISWT--CINTTLTCEVMNGTDPELNLYQDGKHLK--LSQRV 147

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                       ++C   N+     +   + 
Sbjct: 148 ITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 26/139 (18%)

Query: 149 GRPAQFTCKY--EGNPVKTISWMKDGKP-----VPDHNEPVF-------------RIDSV 188
           G+            + +  I W K              E                +I  +
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
           + +D+ +Y+  I + +          L  +    V K   S        N    C     
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDL--KIQERVSKPKISWT----CINTTLTCEVMNG 127

Query: 249 PTPEISWYLDGKKLVNAER 267
             PE++ Y DGK L  ++R
Sbjct: 128 TDPELNLYQDGKHLKLSQR 146

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 18/79 (22%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
             +  L CE           ++             + +  ++S  +I  +     S K+ 
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQ-------------DGKHLKLSQRVITHKWTTSLSAKFK 161

Query: 85  CVVNNSVGGESVETVLTVT 103
           C   N V  ES    ++  
Sbjct: 162 CTAGNKVSKESSVEPVSCP 180

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
           P  Q +  G   +   K  G    T +WMK  K +            N     I + R+E
Sbjct: 14  PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
             G Y  ++ N+  S QA   L +  + DPP
Sbjct: 74  HCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 17/102 (16%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
            P      +  + +   GES  L  +          W KF      +  +  ++ +K  +
Sbjct: 7   GPQIIQFPEDQKVRA--GESVELFGKVTGTQPITCTWMKF------RKQIQESEHMKVEN 58

Query: 68  G----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
                 L I  A+ E  G Y  +V N +G    +  LTV   
Sbjct: 59  SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I +   D+ +  G +       +G      +W    K++  +E 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH 53

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 67.7 bits (166), Expect = 6e-15
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKG 194
            T+     A+F  K  G P  T  W KDGK +          D       I      D G
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSG 75

Query: 195 MYQCVIRNEQESAQASGEL 213
           +Y C ++N   S  +S +L
Sbjct: 76  LYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            PVI     D T++      F   A+G P P   W  DGK +    +
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGK 52

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 20/107 (18%)

Query: 8   PVGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLND 61
           P+    P   +   D                +A        +W K  +G     A+    
Sbjct: 2   PI-SSKPVIVTGLQDTTVSS---DSVAKFAVKATGEPRPTAIWTK--DG----KAITQGG 51

Query: 62  RVKQVSG----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
           + K         L I +    DSG Y C V NS G  S    LT+ A
Sbjct: 52  KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV----------PDHNEPVFRIDSV 188
           V    Q++  G+    + + +G P   +SW+++ +PV           +      RI + 
Sbjct: 10  VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
            + D G Y C   NE  + Q    L+
Sbjct: 70  ERGDAGFYTCKAVNEYGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP  K S  D+++  G +        G P P +SW  + + +   +R
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR 51

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 12/83 (14%)

Query: 30  GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G+   +    Q        W +    +    R+ A      +      L I  A+  D+G
Sbjct: 20  GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC----RLRILAAERGDAG 75

Query: 82  KYLCVVNNSVGGESVETVLTVTA 104
            Y C   N  G    E  L V  
Sbjct: 76  FYTCKAVNEYGARQCEARLEVRG 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMK-DGKPVPDHNEP---VFRIDS 187
           P +    E   Q++  G    F C     +P  T+ W +     +P        +  I +
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 68

Query: 188 VRKEDKGMYQCVIRNEQESAQASGEL 213
           V+  D G Y C   N     Q +  L
Sbjct: 69  VQPSDAGTYVCTGSNMFAMDQGTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G     +C A+        +W +   G        L  R    +G L I+  +  D+G Y
Sbjct: 25  GADVTFICTAKSKSPAYTLVWTRLHNG-------KLPSRAMDFNGILTIRNVQPSDAGTY 77

Query: 84  LCVVNNSVGGESVETVLTV 102
           +C  +N    +     L V
Sbjct: 78  VCTGSNMFAMDQGTATLHV 96

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
           ++     I  G P  FTC+  GNP   I W KDGK +   ++                 +
Sbjct: 13  MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTA 72

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
              +D G Y  +  N Q     +G L +      P
Sbjct: 73  STLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G      C    N      WFK    I   S    +  +      + +L    + ++D G
Sbjct: 23  GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL---DGTCSLHTTASTLDDDG 79

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
            Y  +  N  G  S    L V A 
Sbjct: 80  NYTIMAANPQGRISCTGRLMVQAV 103

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P  +       +  G    F C  +GNP P+I W+ DGK++     
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD 54

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 67.7 bits (165), Expect = 4e-14
 Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 46/186 (24%)

Query: 30  GESFALLCEAQEN-------MWFK---FIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKV 77
           G    L     +         W +    +    RK+   L     ++  +G L IK    
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 78  EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
           +DSG Y   V ++ G   +   L +                            +S P   
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDL-----------------------RILEMVSKP--- 104

Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
                         A  TC+        +   +  + +    +            +  ++
Sbjct: 105 ------MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFK 156

Query: 198 CVIRNE 203
           C   N 
Sbjct: 157 CKAVNR 162

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 64.2 bits (156), Expect = 6e-13
 Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 28/139 (20%)

Query: 149 GRPAQFTCKY--EGNPVKTISWMKDGKPV-----------PDHNEPVF-----RIDSVRK 190
           G             + +  + W +    V                 +      +I ++ +
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 191 EDKGMYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
           +D G Y   + +         + +L++      P+I    S+ TL         C     
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLT--------CEVLEG 122

Query: 249 PTPEISWYLDGKKLVNAER 267
              E+  Y   + L +  +
Sbjct: 123 TDVELKLYQGKEHLRSLRQ 141

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 67.6 bits (164), Expect = 7e-14
 Identities = 28/194 (14%), Positives = 48/194 (24%), Gaps = 32/194 (16%)

Query: 30  GESFALLCEAQEN--MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87
             S  L C+A+     WFK  +G        +     +      +     +  G Y C  
Sbjct: 18  DGSVLLTCDAEAKNITWFK--DG------KMIGFL-TEDKKKWNLGSNAKDPRGMYQCKG 68

Query: 88  NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYE----ISPPLAAGVEPTV 143
           + +         L V   + +  +            +   K +              P  
Sbjct: 69  SQNKS-----KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKG 194
            +I  G     TC     P   I W  + K +    +              +    E  G
Sbjct: 124 VSIS-GTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 180

Query: 195 MYQCVIRNEQESAQ 208
            Y C  R  +    
Sbjct: 181 YYVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 27/138 (19%)

Query: 154 FTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNE-------- 203
            TC       K I+W KDGK +     ++  + + S  K+ +GMYQC             
Sbjct: 23  LTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVY 79

Query: 204 ------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA--------SGNP 249
                  ++ + + +     + D        ++E        Y   I+           P
Sbjct: 80  YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYP 139

Query: 250 TPEISWYLDGKKLVNAER 267
             EI W  + K +   E 
Sbjct: 140 GSEILWQHNDKNIGGDED 157

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 30  GESFALLCEAQ---ENMWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G +  L C      E +W      I G      +  ++         + + +++E SG Y
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFSELEQSGYY 182

Query: 84  LCVVNNSVGGESVETVLTVTA 104
           +C    S   E     L + A
Sbjct: 183 VCYPRGSK-PEDANFYLYLRA 202

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
            +P  + +  G   +  C+    P   + W ++ + V  + + +             I  
Sbjct: 20  YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79

Query: 188 VRKEDKGMYQCVIRNEQESAQASGEL 213
           V K+D G Y     NE      +  L
Sbjct: 80  VNKKDAGWYTVSAVNEAGVTTCNTRL 105

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 30  GESFALLCEAQ-----ENMWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G+S  L C+       +  W +    ++ ++ ++++  ++       TL+IK+   +D+G
Sbjct: 30  GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN---TGRVTLLIKDVNKKDAG 86

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
            Y     N  G  +  T L VTA 
Sbjct: 87  WYTVSAVNEAGVTTCNTRLDVTAR 110

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            P+       + +  G +   +C  S  P P++ W  + + +
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMV 56

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEP---VFRIDSVR 189
                  I  G        + G P  T +W                 +         S +
Sbjct: 7   TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAK 66

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
           + D G Y+  ++NE    +A  E+ 
Sbjct: 67  RADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 17/99 (17%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS 67
            P   + S  I+ K   G +  L  +          W              L   +   +
Sbjct: 2   KPKILTASRKIKIKA--GFTHNLEVDFIGAPDPTATWTVG------DSGAALAPELLVDA 53

Query: 68  G----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
                ++    AK  DSG Y   V N +G +     + V
Sbjct: 54  KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 8/47 (17%), Positives = 14/47 (29%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I  +     +  G  +  +    G P P  +W +       A  
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE 48

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 30/186 (16%)

Query: 30  GESFALLCEAQEN---MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKE-AKVEDSGK 82
           G S  L C    +    W K    +     K               L++++ ++VEDSG 
Sbjct: 14  GTSVELTCPLDSDENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGY 59

Query: 83  YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
           Y+C    S     +     V +   A  +   +       A    K + S    A     
Sbjct: 60  YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDA----KKDGSQTNKAKNLVQ 115

Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV--PDHNEPVFRIDSVRKEDKGMYQCVI 200
           V           TC         I W+KDG  +   +  +  + + +  K+ +G YQC  
Sbjct: 116 VDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQG 172

Query: 201 RNEQES 206
             E  +
Sbjct: 173 AKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 54.9 bits (131), Expect = 2e-09
 Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 28/142 (19%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQES- 206
           G   + TC  + +    + W K+G+ +P  ++    +      ED G Y C      ++ 
Sbjct: 14  GTSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71

Query: 207 ------------------AQASGELKLGGRFDPPVIKE---SFSDETLNPGPNYYFKCIA 245
                             A+     K   + D     +       +      +    C  
Sbjct: 72  YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL 131

Query: 246 SGNPTPEISWYLDGKKLVNAER 267
           +      I W  DG  +     
Sbjct: 132 TDKT---IKWLKDGSIISPLNA 150

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 10/102 (9%)

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDF--GRPAQFTCKYEGNPVKTISWMKDGKPVPDH-- 178
              T +    PP         QT     G        ++G P   + W K G P+     
Sbjct: 11  QPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV 70

Query: 179 ------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                  + VF +    + D G Y+  ++ E     A+  ++
Sbjct: 71  HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           GE   L+   Q       +W K    ++ S   V      R         +++A   DSG
Sbjct: 39  GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV------RTSDFDTVFFVRQAARSDSG 92

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
           +Y   V      ++    + V   
Sbjct: 93  EYELSVQIENMKDTATIRIRVVEK 116

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 10/90 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
                QT+  G  A F  +  G P     W K+G  +           + N     I  V
Sbjct: 10  ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV 69

Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGR 218
             ED         N      +   L +  +
Sbjct: 70  TGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I E    +T+  G + +F+    G P PE  WY +G K+  ++R
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR 51

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 44  WFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100
           W+K    IE S R       D V      L+I++   EDS   +    N  G  S    L
Sbjct: 39  WYKNGVKIERSDRIYWYWPEDNV----CELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94

Query: 101 TVTA 104
            V A
Sbjct: 95  LVQA 98

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------------------- 177
             P  Q    G   +  C+  G+PV  I W  +G+   D                     
Sbjct: 26  QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85

Query: 178 -HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
            H      ID++ +ED G Y+C   N+ +    +   +
Sbjct: 86  QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 18/117 (15%)

Query: 3   GSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK----------F 47
            S L P G     F       +     G S  L CEA  +      W+            
Sbjct: 11  SSGLVPRGSHMAGFVQAPLSQQRWV--GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ 68

Query: 48  IEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           +   +R   V ++    Q  + T+ I     ED+G Y C  +N      +     V 
Sbjct: 69  LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
                ++   +    G +    C A G+P PEI W+ +G+   +   
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
           +      +  G+  +F    +  P   + W  +G  +                  I    
Sbjct: 13  LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCH 72

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
            +D G Y+ V  N +  A     L 
Sbjct: 73  TDDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I        +  G N  F       PT E+ WY +G +L  + +
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSK 54

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G++   +   Q        W+     ++ SS+      +  +     TL I +   +DSG
Sbjct: 23  GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL-----TLEILDCHTDDSG 77

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
            Y  V  N  G  S    L VT  
Sbjct: 78  TYRAVCTNYKGEASDYATLDVTGG 101

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 60.2 bits (146), Expect = 6e-12
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI------------ 185
             P+   +  G PA   CK EG P  TI W K G+ V  D ++P                
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73

Query: 186 ---DSVRKEDKGMYQCVIRNE 203
                  + D+G+Y CV RN 
Sbjct: 74  IVHGRKSRPDEGVYVCVARNY 94

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
           PP I E  SD  ++ G      C A G PTP I WY  G+++
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVP---------DHNEPVFRIDSVR 189
           +      + G   ++ CK E     T ++W    + +          +    +  +  + 
Sbjct: 7   QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
           K D G Y+C + N+     +  EL 
Sbjct: 67  KLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
            L +K+    D G Y C V N  G +S    L V   
Sbjct: 59  ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
            ++           G +  + C         +++WY   ++L N+E+
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEK 48

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 152 AQFTCKYEGNPVKTISWMKDGKPVP-------------DHNEPVFRIDSVRKEDKGMYQC 198
                   GNP  T+ W+ +G+P+              + +E     +     + G Y  
Sbjct: 23  HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82

Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFS 229
           + +N   +A  +           P   +  S
Sbjct: 83  IAKNPLGTANQTINGHF---LKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 44  WFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99
           W     G     S+ + V      +   G L+  +    ++G Y  +  N +G  +    
Sbjct: 39  WLH--NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96

Query: 100 LTVTAP 105
                 
Sbjct: 97  GHFLKE 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           PP +      E       +  + +  GNP P + W  +G+ L  ++ 
Sbjct: 8   PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKI 51

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 60.3 bits (145), Expect = 7e-11
 Identities = 33/218 (15%), Positives = 57/218 (26%), Gaps = 46/218 (21%)

Query: 58  PLNDRVKQVSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
           PL  +   + G    + + + V++  + +C  N   G  + +T LTV             
Sbjct: 36  PLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV------------- 82

Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDG 172
                             P    + P       G+     C+ EG       T+  ++  
Sbjct: 83  ---------------YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127

Query: 173 KPV---PDHNEPV---FRIDSVRKEDKGMYQCVIRNEQESAQAS------GELKLGGRFD 220
           K +   P   EP      +   R      + C    +                +L     
Sbjct: 128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYL 257
           P    +  S   L         C   G  P  E   +L
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 7/131 (5%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHNEPVFRIDSVRKEDKGMY 196
           V P+   +  G     TC    +  K +        K +          +    ++    
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQP 63

Query: 197 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEI 253
            C        + A   L +    +   +  +        G N   +C   G        +
Sbjct: 64  MCYSNCPDGQSTAKTFLTVYWTPERVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 254 SWYLDGKKLVN 264
                 K+L  
Sbjct: 122 VLLRGEKELKR 132

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKG 194
           QT++ G+     C+   N      W K+G PV + +              I +   ED+G
Sbjct: 17  QTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74

Query: 195 MYQCVIRNEQESAQAS 210
            Y         +  A 
Sbjct: 75  DYVFAPDAYNVTLPAK 90

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSGK 82
           G+   L CE  EN    W K   G    + V  +DR+K V       L+I  A  ED G 
Sbjct: 22  GKEICLKCEISENIPGKWTK--NG----LPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75

Query: 83  YLCVVNNSVGGESVETVLTVTAPLAAG 109
           Y+   +      ++   + V +  ++G
Sbjct: 76  YVFAPDA--YNVTLPAKVHVISGPSSG 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              I    +D+T+N G     KC  S N   +  W  +G  +  ++R
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDR 51

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 28/168 (16%), Positives = 64/168 (38%), Gaps = 13/168 (7%)

Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
           + ++ P      P V+ +  G+     C    +      +E  +      RP   + + +
Sbjct: 2   VRLSVP------PLVEVM-RGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQ 53

Query: 160 GNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLG 216
           G+ ++       G+  P    ++    +   +  D+  Y C V      +A+A+  L + 
Sbjct: 54  GSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113

Query: 217 GRFDPPVIKESFSD-ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL 262
            + +   +  +      +         C +  GNP P+I+WY +G++L
Sbjct: 114 AKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 30/138 (21%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
            G L++ EA+V D   Y+CVV     G       L V A       P             
Sbjct: 76  QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK------P------------- 116

Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP---DHNEP 181
                      +  + T+  ++       TC    GNP   I+W ++G+ +    + N  
Sbjct: 117 ------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPE 170

Query: 182 VFRIDSVRKEDKGMYQCV 199
            +      +E  G+    
Sbjct: 171 GYMTSRTVREASGLLSLT 188

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 44/179 (24%)

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
           L D++   +  L I + K++D+G Y C+++   G +     + V                
Sbjct: 71  LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV---------------- 113

Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPD 177
                        + P     +  +         + TC+ EG P   + W   D + +  
Sbjct: 114 -------------NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG 160

Query: 178 HNEPVFRIDS-----------VRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPV 223
                                +      ++ C  R        + EL +       PP 
Sbjct: 161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 36/159 (22%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVK-----TISWMKDGKPV---------PDHNEPVF- 183
           V   +  +++G      CK+            + W  + K +                + 
Sbjct: 6   VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYR 65

Query: 184 -----------------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
                            +I  V+ +D G+Y+C+I +   +      +K+   ++    + 
Sbjct: 66  QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRI 124

Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
              D        +   C A G P  E+ W     ++++ 
Sbjct: 125 LVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG 160

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 12/87 (13%)

Query: 28  PGGESFALLCEAQ-----ENMWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE 78
           P      L C+A+     E +W       + G +        +++  V+ TL I      
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---T 185

Query: 79  DSGKYLCVVNNSVGGESVETVLTVTAP 105
            +  + C        E+    L +   
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPEL 212

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 21/186 (11%), Positives = 43/186 (23%), Gaps = 50/186 (26%)

Query: 30  GESFALLCEAQEN----MWFK------FIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKV 77
             +      +       +W K       +E S  +      +RV     SG+L I     
Sbjct: 10  YGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69

Query: 78  EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
            D  +Y     N          L V   ++   +P +                       
Sbjct: 70  SDEDEYEMESPNITDTMKFF--LYVLEMVS---KPMIYWE-------------------- 104

Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
                         A  TC+        +   +  + +    +    +       +  ++
Sbjct: 105 -----------CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNLRAPFK 151

Query: 198 CVIRNE 203
           C   N 
Sbjct: 152 CKAVNR 157

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 30/138 (21%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVR 189
                F       P+K + W K    V +     F                    I ++ 
Sbjct: 10  YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
             D+  Y+    N  ++ +    L +      P+I    S+ TL         C      
Sbjct: 69  SSDEDEYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLT--------CEVLEGT 118

Query: 250 TPEISWYLDGKKLVNAER 267
             E+  Y   + L +  +
Sbjct: 119 DVELKLYQGKEHLRSLRQ 136

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD 177
           D   P  FTC            +     +D G   QF C+ +G+P   I W+   K +  
Sbjct: 373 DVLLPNYFTC----RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVS 428

Query: 178 HNEPVF---------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
                           +   + +D G Y C+  N   +      L
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 3   GSDLKPVGFKAPT--FSSVSDIIRFKKPG------GESFALLCEAQEN--MWFKFIEGSS 52
           G + K          F+     IR +K        G +   +C A  +      ++    
Sbjct: 365 GKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRK 424

Query: 53  RKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
             V+   N R+     GTL ++ A+V+D+G YLC+  N+ G +S+   L V +
Sbjct: 425 HLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 218 RFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
                 I++       ++ G    F C A G+P P I W    K LV+A+ 
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS 431

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 17/90 (18%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKG 194
                     +GNP   + W  +G  + +      +              +D+    + G
Sbjct: 16  DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVI 224
            Y  + +NE    +             P I
Sbjct: 76  DYTLIAKNEYGKDEKQISAHF---MGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 13/101 (12%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVK 64
           APT + +             + +    + N      WF     +  S             
Sbjct: 4   APTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 65  QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
           +  G L +      ++G Y  +  N  G +  +        
Sbjct: 59  EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I      E+     ++       GNP P + W+ +G  L  ++ 
Sbjct: 4   APTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKY 47

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 14/82 (17%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------ID 186
               Q +  G   +   +        + WMK+G  +   +    R               
Sbjct: 14  PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72

Query: 187 SVRKEDKGMYQCVIRNEQESAQ 208
            V +ED+G YQ +    Q  A+
Sbjct: 73  DVVQEDRGRYQVITNGGQCEAE 94

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 31/146 (21%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
           S +L +   K+ED+G Y   ++     +     L +   L       V T         T
Sbjct: 69  SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR---NIQV-TNHSQLFQNMT 124

Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHNEPVFRI 185
           C+                          TC  E  +   +  W   G  +   ++P   +
Sbjct: 125 CE-----------------------LHLTCSVEDADDNVSFRWEALGNTL--SSQPNLTV 159

Query: 186 DSV-RKEDKGMYQCVIRNEQESAQAS 210
               R   +  Y C+  N   +   S
Sbjct: 160 SWDPRISSEQDYTCIAENAVSNLSFS 185

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 50.4 bits (120), Expect = 8e-08
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 27/142 (19%)

Query: 149 GRPAQFTCKY-EGNPVKTISWMKDGKPVP--------------DHNEPVFR--------- 184
           G       ++  G  V  I+W+ +   +                + +   R         
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72

Query: 185 -IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
            + +++ ED G Y+  I  +  +  +S  L++  +     +    S    N     +  C
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH-SQLFQNMTCELHLTC 131

Query: 244 IA-SGNPTPEISWYLDGKKLVN 264
                +      W   G  L +
Sbjct: 132 SVEDADDNVSFRWEALGNTLSS 153

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 29/222 (13%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGT-LI 71
            + S    ++   +   ++  + C     N+          K  VP  +R+   S     
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 67

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLA----AGVEPTVQTIDFGRPAQFTC 127
           I    +  +G   C    +         + V                  +  G      C
Sbjct: 68  IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--- 184
                  +                  F  +Y  +  +    +         +E       
Sbjct: 128 TARTELNV---------------GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172

Query: 185 --IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
             ID V + D+G+Y C   +   + + S  +++    + P+ 
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEDPIE 211

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 25/160 (15%), Positives = 42/160 (26%), Gaps = 21/160 (13%)

Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK------- 170
           D+  P  F                   T +  +     C         +S          
Sbjct: 1   DYRSP--FIASVSDQH------GVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRF 51

Query: 171 --DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
             DG  +   ++  F I S      GM  C  +   ES Q+   + +   +    +  S 
Sbjct: 52  VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP 111

Query: 229 SDET-LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA 265
           S    L+ G      C A        + +W     K  + 
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
           +     +  G  A F C+      + + W  D  P+                V  +  + 
Sbjct: 19  DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78

Query: 190 KEDKGMYQCVIRNEQESAQ 208
            +D G       +++ SA 
Sbjct: 79  LKDSGTIYFEAGDQRASAA 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
             +     + GR     I E   D  +  G +  F+C  S      + W+LD   L   E
Sbjct: 1   GSSGSSGLVQGR--RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58

Query: 267 R 267
            
Sbjct: 59  L 59

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 16/84 (19%)

Query: 30  GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           G S    C           WF     +  +                  L +++  ++DSG
Sbjct: 28  GSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH----VLTLRQLALKDSG 83

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
                     G +     L VT  
Sbjct: 84  TIYFE----AGDQRASAALRVTEK 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKG 194
            T+     A F C+     V T  W K+G  V                  ID VR ED+G
Sbjct: 18  LTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76

Query: 195 MYQCVIRNEQESAQA 209
            Y  V      S  A
Sbjct: 77  DYTFVPDGYALSLSA 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
            E     CE  +      W+K   G    V V  + R+          L+I + + ED G
Sbjct: 23  AEQAVFKCEVSDEKVTGKWYK--NG----VEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
            Y  V +      S+   L     
Sbjct: 77  DYTFVPDGYAL--SLSAKLNFLEI 98

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
              + +  +D T+       FKC  S        WY +G ++  ++R
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKR 53

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 59.0 bits (142), Expect = 4e-10
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 155 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
             K    P+    W   G P    N     I +       +   VI +  +   A  E+K
Sbjct: 97  YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156

Query: 215 LGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
           + G             +  +N G    F+C A G        +L G  +
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 27/155 (17%), Positives = 40/155 (25%), Gaps = 37/155 (23%)

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
             L I             V+ +   G      + V         P  +T  F R      
Sbjct: 123 AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH------PCTRTPHFLRIQN--- 173

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------- 177
                             ++ G+ A F C   G  V        G  V D          
Sbjct: 174 ----------------VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS 217

Query: 178 --HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
                  F + +  K D G Y+C+IR E     ++
Sbjct: 218 SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP--VKTISWMKDGKPVPDHNEPV 182
           F C     P +   V+P  Q+   G    FTC    +     T +W  D + + D     
Sbjct: 3   FVCDDFPXPQIT--VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMEN 60

Query: 183 F-----------------RIDSVRKEDKGMYQCVIRNEQESAQAS 210
           +                 R+ +V    +G YQCVI N   S+ + 
Sbjct: 61  YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAE 266
           F  P I      ++   G +  F C A+ +    ++  W  D + L +AE
Sbjct: 8   FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAE 57

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 14/87 (16%)

Query: 30  GESFALLCEAQ-------ENMWF---KFIEGSSRKVAVPL---NDRVKQVSGTLIIKEAK 76
           G   +  C A           W    + ++ +  +    L      + + +  L ++  +
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 77  VEDSGKYLCVVNNSVG-GESVETVLTV 102
               G Y CV++N  G   SV   LT+
Sbjct: 85  FTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVF 183
           P  A   +P    +  G PA F  + E   VK + W + G  +          +      
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTL 65

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQ 208
            +  V   D+G Y  +  + +    
Sbjct: 66  TVREVGPADQGSYAVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 18/82 (21%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
           G       E +       W +   G      +  +++    +     TL ++E    D G
Sbjct: 23  GSPAVFEAETERAGVKVRWQR--GG----SDISASNKYGLATEGTRHTLTVREVGPADQG 76

Query: 82  KYLCVVNNSVGGESVETVLTVT 103
            Y  +     G   V+  L V 
Sbjct: 77  SYAVI----AGSSKVKFDLKVI 94

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 22/191 (11%), Positives = 44/191 (23%), Gaps = 54/191 (28%)

Query: 30  GESFALLCEAQEN------MWFK---------FIEGSSRKVAVPLNDRVK--QVSGTLII 72
           G +  L              W           F  G          DRV   + +G L I
Sbjct: 14  GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRI 73

Query: 73  KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEIS 132
                ED G Y   + +    +  +  + V   ++   +P +            C     
Sbjct: 74  YNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVS---KPMIYW---------ECSNAT- 119

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKED 192
                                 TC+        +   +  + +    +    +       
Sbjct: 120 ---------------------LTCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNL 156

Query: 193 KGMYQCVIRNE 203
           +  ++C   N 
Sbjct: 157 RAPFKCKAVNR 167

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 20/121 (16%)

Query: 158 YEGNPVKTISWMKDGKPVP-----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
                 K + +  +GK              D      RI +V KED+G Y   + +E E 
Sbjct: 35  LHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94

Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
            Q    +++      P+I    S+ TL         C        E+  Y   + L +  
Sbjct: 95  -QWKITMEVYEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKEHLRSLR 145

Query: 267 R 267
           +
Sbjct: 146 Q 146

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 10/74 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
           Q +  G   +  C+        + W+KD K +          +    +  I     +D G
Sbjct: 18  QWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76

Query: 195 MYQCVIRNEQESAQ 208
            Y C +   + +A 
Sbjct: 77  EYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 18/87 (20%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
           GE   L CE         W K       + A+  + +   V       L+I+ A ++D+G
Sbjct: 23  GEDVELRCELSRAGTPVHWLKD------RKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76

Query: 82  KYLCVVNNSVGGESVETVLTVTAPLAA 108
           +Y C V  S         L V    + 
Sbjct: 77  EYTCEVEASKS----TASLHVEEKASG 99

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           P  I +   D+ + PG +   +C  S   TP + W  D K +  +++
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQK 53

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 11/79 (13%), Positives = 17/79 (21%), Gaps = 10/79 (12%)

Query: 140 EPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVR 189
                 +  G    F C     +      W   GK V             + +  +    
Sbjct: 14  RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73

Query: 190 KEDKGMYQCVIRNEQESAQ 208
             D G     +R     A 
Sbjct: 74  PSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 221 PPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAER 267
              I +      +  G +  F+C ++  + +    W + GK + ++ R
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSR 55

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 30  GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVED 79
           GES +  C           MW     G      V  + R +         L+++EA   D
Sbjct: 23  GESCSFECVLSHESASDPAMWTV--GG----KTVGSSSRFQATRQGRKYILVVREAAPSD 76

Query: 80  SGKYLCVVNNSVGGESVETVLTVTAP 105
           +G+ +      V G + +  L V   
Sbjct: 77  AGEVVFS----VRGLTSKASLIVRER 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 11/89 (12%)

Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------ 183
           E               +  G   + T +   +    + W+K+G+ +              
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQ 208
                I      D   YQCV+  E+ S +
Sbjct: 71  KRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 44  WFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100
           W K    I+ S  K         +    TL I +  + D   Y CV    VGGE   T L
Sbjct: 49  WLKNGQEIQMSGSKYIFESIGAKR----TLTISQCSLADDAAYQCV----VGGEKCSTEL 100

Query: 101 TVT 103
            V 
Sbjct: 101 FVK 103

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 22/103 (21%)

Query: 141 PTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPDHN----------------EP 181
           P    +         C     +G P  ++ W+ +G  + + +                  
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
             R++     + G Y  +  N    A AS         D P  
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFE 103

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 5/67 (7%)

Query: 44  WFK---FIEGSSRKVAVPLND--RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98
           W      +  +S      L          G L + +    ++G Y  +  N  G  S   
Sbjct: 34  WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93

Query: 99  VLTVTAP 105
           +      
Sbjct: 94  MAAFMDN 100

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 9/50 (18%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLDGKKLVNAER 267
            P   +      L+     +  CI     G P P + W  +G  L     
Sbjct: 3   MPASVQ------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF 46

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 39/129 (30%)

Query: 89  NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
           +S        +LTV A                 P +FT                 +    
Sbjct: 2   SSGSSGRTSAMLTVRAL----------------PIKFT------------EGLRNEEATE 33

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCV 199
           G  A   C+        + W K  + +          D      +I  +  ED G Y C+
Sbjct: 34  GATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91

Query: 200 IRNEQESAQ 208
              E+ SA 
Sbjct: 92  CGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 17/83 (20%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGK 82
           G +  L CE  +     W+K          +   DR           L I+    ED+G+
Sbjct: 34  GATAVLRCELSKMAPVEWWKG------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87

Query: 83  YLCVVNNSVGGESVETVLTVTAP 105
           YLC+     G E    +LTV A 
Sbjct: 88  YLCM----CGKERTSAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 202 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
           +   S + S  L +     P    E   +E    G     +C  S      + W+   + 
Sbjct: 2   SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHET 57

Query: 262 LVNAER 267
           L + +R
Sbjct: 58  LRDGDR 63

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR------- 184
           S  +    +    T   G   +  C+        + W K+G+ +    +  +R       
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63

Query: 185 ----IDSVRKEDKGMYQCVIRNEQESAQ 208
               I+   K D   Y  +    Q SA+
Sbjct: 64  HILIIEGATKADAAEYSVMTTGGQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%)

Query: 30  GESFALLCEAQEN----MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
           GE   L CE  E+     WFK     I G   +  + +  +       LII+ A   D+ 
Sbjct: 22  GERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH----ILIIEGATKADAA 77

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
           +Y  +             L+V   
Sbjct: 78  EYSVMTTG----GQSSAKLSVDLK 97

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 21/96 (21%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK---TISWMKDGKPVPDHNEP--------------- 181
           +P   T+  G    F  K +   +    TI W K                          
Sbjct: 13  KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 182 ---VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                +I   +    G Y+C +  + +    S +L+
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 44  WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
           WFK          G   ++        +  +  + I +AK   +G Y C V      +S 
Sbjct: 44  WFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSC 103

Query: 97  ETVLTVTAP 105
              L V   
Sbjct: 104 SFDLEVHES 112

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 21/96 (21%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK---TISWMKD------------------GKPVPDH 178
            P    +  G    F+ +  G  +     + W K                          
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                 I   +    G Y+C +  + +   ++  L 
Sbjct: 70  YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 44  WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
           WFK          G   ++    +   K     L I +A+   +G Y C V+     +  
Sbjct: 41  WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCS 100

Query: 97  ETVLTVT 103
              LTV 
Sbjct: 101 NFNLTVH 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 30  GESFALLCEAQ-------ENMWFK------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
           GE   L C A+       +  W          +  +R +       +K+   TL I    
Sbjct: 23  GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 77  VEDSGKYLCVVNNSVGGESVETVLTVTAP 105
             D G Y C  ++ +  +   T + V   
Sbjct: 83  RSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 22/103 (21%)

Query: 141 PTVQTIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEP----------------- 181
                +  G      C      N     +W                              
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
              ID V + D+G+Y C   +   + + S  +++    + P +
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFV 114

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
             +  G  A F  +    P     W   G+P+          D  + +  + + +    G
Sbjct: 15  VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTG 73

Query: 195 MYQCVIRNEQESAQ 208
                  N + +A 
Sbjct: 74  EVSFQAANTKSAAN 87

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 34/144 (23%)

Query: 149 GRPAQFTCKYEGNPVKT----ISWMKDGKPV------PDHNEPVF--------------R 184
              A  +C +  +  +     I W K+ K V        +  P +               
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68

Query: 185 IDSVRKEDKGMYQCVIRN-----EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY 239
           I ++R  D+G Y+CV+        +    A   L +   F  P I    SD  +      
Sbjct: 69  ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIR 124

Query: 240 YFKCIASG-NPTPEISWYLDGKKL 262
              C  SG  P P +SW  +G++L
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
           +++I   +  D G Y CVV            L           PT               
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--------------- 110

Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPV----- 182
                        +   I      +  C    G P   +SW+++G+ +   N  V     
Sbjct: 111 ----------PSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE 160

Query: 183 ---FRIDS---VRKEDKGMYQCVIRNE 203
              + + S           + C+I+  
Sbjct: 161 TELYAVSSKLDFNMTTNHSFMCLIKYG 187

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
              + G  A  +C+        ++W KDGK +                  +    + + G
Sbjct: 21  VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79

Query: 195 MYQCVIRNEQESAQ 208
            Y C    +Q S +
Sbjct: 80  EYSCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 18/83 (21%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
           G S  L CE  +      W+K  +G      +  + +V+  +      L++++A   ++G
Sbjct: 26  GASATLSCEVAQAQTEVTWYK--DG----KKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79

Query: 82  KYLCVVNNSVGGESVETVLTVTA 104
           +Y C      GG+ +   L V  
Sbjct: 80  EYSCE----AGGQQLSFRLQVAG 98

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 10/78 (12%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRK 190
           +    T         TC+         +W KDG+ V +    V +         +   + 
Sbjct: 16  DKVSLTFTTSERVVLTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 191 EDKGMYQCVIRNEQESAQ 208
           +D G ++C          
Sbjct: 75  QDSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 30  GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
            E   L CE         W+K  +G      V  ++ +          LI+ EAKV+DSG
Sbjct: 25  SERVVLTCELSRVDFPATWYK--DG----QKVEESELLVVKMDGRKHRLILPEAKVQDSG 78

Query: 82  KYLCVVNNSVGGESVETVLTVTAP 105
           ++ C       G S    +TV  P
Sbjct: 79  EFECR----TEGVSAFFGVTVQDP 98

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSV 188
            V+P    +  G+ A F C+   +    ++W KD + +          + N+    I+ V
Sbjct: 486 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV 545

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
           + +DKG Y    +N   + +    L 
Sbjct: 546 KGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
            L I   K +D G+Y     NS G +     L VT
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW---MKDGKPVPDHNEPVFRIDSVRKEDKGM 195
           ++P V  ++ G      C       +       ++             ++  +R E +  
Sbjct: 7   LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQ 65

Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPE 252
             C  R  + + QA G ++   R D   +           G N+   C   G     +  
Sbjct: 66  PVCFFRCARRTLQARGLIRTFQRPDRVEL--MPLPPWQPVGENFTLSCRVPGAGPRASLT 123

Query: 253 ISWYLDGKKLVN 264
           ++     ++L+ 
Sbjct: 124 LTLLRGAQELIR 135

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 30  GESFALLCEA----QENMWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYL 84
           G++  + C+        +W      S+ +V    ++    V +G L  K+ +VED G Y 
Sbjct: 261 GDTLTIRCDTKQQGMTKVWVSP---SNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYT 317

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
           C        E++   L V      G   T+         
Sbjct: 318 CYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 22/121 (18%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKE 191
           + +      G      C  +   +  +      + V                    V+ E
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
           D G+Y C    E  +   S ELK+                      +      A     P
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHG--------------HHDTLNAAADPWSHP 357

Query: 252 E 252
           +
Sbjct: 358 Q 358

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 10/78 (12%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
                 +  G  A   C         + W      +          +       + ++R 
Sbjct: 14  ALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72

Query: 191 EDKGMYQCVIRNEQESAQ 208
           +D G Y C   ++  SA 
Sbjct: 73  QDSGRYSCSFGDQTTSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
           G   P   +E+  D  +  G     +C+ S    P + W      L   ++
Sbjct: 4   GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDK 53

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
               FTC             P    +  G  A+  C+     + ++SW+     V  H  
Sbjct: 333 DQNYFTC-----YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA 386

Query: 181 PVFR----------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
              R            +V  +D GMY C++ N   +  AS  L
Sbjct: 387 YKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 30  GESFALLCEAQENM----WFKFIEGSSRKVAVP--LNDRVK-QVSGTLIIKEAKVEDSGK 82
           G +  L C A  ++    W       +  V        R+     GTL      V+D+G 
Sbjct: 356 GMAAELKCRASTSLTSVSWIT----PNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411

Query: 83  YLCVVNNSVGGESVETVLTVTA 104
           Y C+V+NSVG  +    L VT 
Sbjct: 412 YTCMVSNSVGNTTASATLNVTG 433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
             A F C    S P      P    I  GR A+  C+    P+ ++ W+     V  H  
Sbjct: 344 DQASFQC----SAPFIM-DAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHAS 396

Query: 181 PVFR----------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
              R             V   D G+Y C++ N   ++ AS  L
Sbjct: 397 RHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVP-LNDRVK-QVSGTLIIKEAKVEDSGKYLCVV 87
           G    L C        K++  +   ++    + R+     GTL      + D+G Y C+V
Sbjct: 367 GRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426

Query: 88  NNSVGGESVETVLTVTA 104
            N  G  +    L V+ 
Sbjct: 427 TNVAGNSNASAYLNVST 443

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 17/102 (16%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
           +   +    G  A   C  E + V  + W K  + +          D      +I  +  
Sbjct: 14  DLKTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET 232
            D G Y C+        + S  L +     P    E     +
Sbjct: 72  ADAGEYSCMCGQ----ERTSATLTVRAL--PARFTEGSGPSS 107

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGK 82
           G +  L CE  +     W K          +    R           L I +  V D+G+
Sbjct: 23  GATATLQCELSKVAPVEWKKG------PETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76

Query: 83  YLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
           Y C+     G E     LTV A  A   E 
Sbjct: 77  YSCM----CGQERTSATLTVRALPARFTEG 102

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRK 190
           E T   ++    A FTCK   +P  T++W K    +          +       I ++ K
Sbjct: 14  ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
            D   Y C I      AQ+  +L + GR   P 
Sbjct: 73  ADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 27/190 (14%), Positives = 47/190 (24%), Gaps = 35/190 (18%)

Query: 30  GESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
             S  + C    EA           + R++         +     +I       +G+Y C
Sbjct: 23  DGSVKIQCQAIREAYLTQLMIIKNSTYREI-GRRLKFWNETDPEFVIDHMDANKAGRYQC 81

Query: 86  VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145
                                +  +E  V  +               P L+A     +  
Sbjct: 82  QYRIGHY----------RFRYSDTLELVVTGLYG------------KPFLSADRGLVLMP 119

Query: 146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVI 200
              G     TC     P    S  K+G+          +   F +  V     G+Y+C  
Sbjct: 120 ---GENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176

Query: 201 RNEQESAQAS 210
              +     S
Sbjct: 177 WYNRSPYLWS 186

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 12/128 (9%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTI-SWMKDGKPVPDH--------NEPVFRIDSVRKEDKG 194
             I      +  C+       T    +K+                +P F ID +     G
Sbjct: 18  PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAG 77

Query: 195 MYQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
            YQC  R      + S  L+L   G +  P +        L PG N    C ++  P   
Sbjct: 78  RYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRG-LVLMPGENISLTCSSAHIPFDR 136

Query: 253 ISWYLDGK 260
            S   +G+
Sbjct: 137 FSLAKEGE 144

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR------- 184
           S    A +      +D G   +F  +   +P   + W K+G+ +    + +F        
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 185 --IDSVRKEDKGMYQCVIRNEQESAQ 208
             I++ +  D   Y     +E+ S +
Sbjct: 65  LFINNCQMTDDSEYYVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAG 109
            L I   ++ D  +Y        G E   T L V +  ++G
Sbjct: 64  ILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGPSSG 100

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 23/131 (17%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
           E+   +   VE        G     TC  +      I+W  D       +     I    
Sbjct: 3   ELKKDVYV-VELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKE 59

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
             D G Y C    E  S      L L  + +  +       +   P    + +C A    
Sbjct: 60  FGDAGQYTCHKGGEVLSHS----LLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYS 115

Query: 250 TPEISWYLDGK 260
                W+L   
Sbjct: 116 GRFTCWWLTTI 126

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
           RI +V   D G Y C  ++     +A  ELK+        +     D         + +C
Sbjct: 86  RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV-----DVKGYKDGGIHLEC 140

Query: 244 IASGN-PTPEISWYLDGKKLVNAE 266
            ++G  P P+I W  +  + +   
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTV 164

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 29/167 (17%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
            L I      DSGKYLC   +    E     L V A                        
Sbjct: 84  ALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL----------------------- 120

Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKD-GKPVPDHNEPV---- 182
              S             I         C+  G  P   I W  + G+ +P    PV    
Sbjct: 121 --GSDLHVDVKGYKDGGI------HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADG 172

Query: 183 ---FRIDS---VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
              + + +   +R        C IR+     + +  + +   F    
Sbjct: 173 VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSA 219

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 23  IRFKKPGGESFALLCEAQEN------MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIK 73
           +  K        L C +          W         +     V     +  V+ ++I++
Sbjct: 126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR 185

Query: 74  EAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
            +         C + +S+ G      +++  P 
Sbjct: 186 GS---SGEGVSCTIRSSLLGLEKTASISIADPF 215

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 49/197 (24%)

Query: 43  MWFKFIEGSSRKVAVPLNDRVKQVS-----------------GTLIIKEAKVEDSGKYLC 85
            WF+  E       V  N+  ++V                   +L I +A++ED+G Y  
Sbjct: 40  YWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFF 99

Query: 86  VVNNSVGGE----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
            V      +      +  L VTA +       ++ ++ GRP + +C              
Sbjct: 100 RVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSC-------------- 145

Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP---VFRIDSVRKEDKGMYQC 198
                            E  P  T SW  +     D          +    ++      C
Sbjct: 146 -----------SLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTC 194

Query: 199 VIRNEQESAQASGELKL 215
            ++ +         ++L
Sbjct: 195 QMKRQGAQVTTERTVQL 211

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCV 199
                 TC+    P   + W KDG+ V +    + +         + +V+ ED G Y C 
Sbjct: 28  LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86

Query: 200 IRNEQESAQ 208
           I +E  S  
Sbjct: 87  IDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
            L++   ++EDSG+YLC     +  ES    +TVT P
Sbjct: 69  RLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEP 101

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 18/74 (24%)

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRID 186
           T+  G  A  TC+ + N   ++ W    +                       +E    + 
Sbjct: 17  TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76

Query: 187 SVRKEDKGMYQCVI 200
            V   D+G Y C +
Sbjct: 77  DVSLSDEGQYTCSL 90

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 15/144 (10%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVP----DHNEPVFRIDS 187
            PL       V  +  G   Q TC+    +   ++ W      +     D    V  + +
Sbjct: 6   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRN 65

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
                 G   CV      + Q + +L +    +   +    S   L PG +    C A  
Sbjct: 66  ASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTV----SPAALVPG-DPEVACTAHK 120

Query: 248 NP-----TPEISWYLDGKKLVNAE 266
                      S  + G++L  A+
Sbjct: 121 VTPVDPNALSFSLLVGGQELEGAQ 144

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 17/92 (18%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFR-------------- 184
               Q    G   Q  C     P    I+W      +       +               
Sbjct: 19  STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTL 78

Query: 185 -IDSVRKEDKG-MYQCVIRNEQESAQASGELK 214
            I ++ + D   +Y C   N   S      LK
Sbjct: 79  TISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 14/104 (13%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDR 62
            P  SS           GE   + C  +         W         G+S +  V     
Sbjct: 14  PPIISSTQTQHALH---GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70

Query: 63  VKQVSGTLIIKEAKVED-SGKYLCVVNNSVGGESVETVLTVTAP 105
            + V  TL I      D    Y C   NS G ++    L     
Sbjct: 71  EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 206 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 262
           S+ +SG L + G   PP+I  S   +    G     KC     P P+ I+W      L
Sbjct: 2   SSGSSGTLTVNG---PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 40/244 (16%), Positives = 69/244 (28%), Gaps = 49/244 (20%)

Query: 28  PGGESFALLC----EAQENMWFKFIEGSSRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGK 82
           P  +   + C     A E       EGS   V  P   +R+ +V     I +     +G+
Sbjct: 19  PKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVK--FYIPDMNSRMAGQ 74

Query: 83  YLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
           Y C+          S    L VT                            +P L+    
Sbjct: 75  YSCIYRVGELWSEPSNLLDLVVTEMYD------------------------TPTLSVHPG 110

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----VFRIDSVRKEDKGM 195
           P V +   G    F C+ +         +K+G+              F +  V    +G 
Sbjct: 111 PEVIS---GEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGT 166

Query: 196 YQCVI-RNEQESAQASGELKLG--GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
           Y+C    N    +  S  +KL   G  +   +  +  D T        +          +
Sbjct: 167 YRCFGSYNNHAWSFPSEPVKLLVTGDIENTSL--APEDPTFPADTWGTYLLTTETGLQKD 224

Query: 253 ISWY 256
            + +
Sbjct: 225 HALW 228

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 13/127 (10%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
             +   +     C+             +G              N+  F I  +     G 
Sbjct: 16  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 74

Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
           Y C+ R  +  ++ S  L L     +D P +        +  G    F C      T   
Sbjct: 75  YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMF 132

Query: 254 SWYLDGK 260
               +G+
Sbjct: 133 LLLKEGR 139

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 48.7 bits (115), Expect = 6e-07
 Identities = 17/82 (20%), Positives = 21/82 (25%), Gaps = 7/82 (8%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------R 184
               A  V   V T   G     TC   E     T+ W+        H            
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 185 IDSVRKEDKGMYQCVIRNEQES 206
           + SV+  D G Y C        
Sbjct: 64  LRSVQLHDSGNYSCYRAGRPAG 85

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 30  GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
           G+S  L C   E        W        +  A     R   +   L+++  ++ DSG Y
Sbjct: 21  GDSVTLTCPGVEPEDNATVHWVL-----RKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNY 75

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
            C       G      L V  P     EP +        +   C++     
Sbjct: 76  SCYRAGRPAG---TVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRST 120

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 18/81 (22%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPV 182
               T++ G+     C        ++ W+                           N+  
Sbjct: 8   TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67

Query: 183 FRIDSVRKEDKGMYQCVIRNE 203
             + +V  +D+G+Y+C+  ++
Sbjct: 68  ITVPNVTLQDEGVYKCLHYSD 88

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
            ++ +    ++D G Y C+  +     + E  + V A 
Sbjct: 66  LSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLAT 102

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 13/127 (10%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
             +   +     C+             +G              N+  F I  +     G 
Sbjct: 13  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71

Query: 196 YQCVIRNEQESAQASG--ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
           Y C+ R  +  ++ S   +L +   +D P +        +  G    F C      T   
Sbjct: 72  YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMF 129

Query: 254 SWYLDGK 260
               +G+
Sbjct: 130 LLLKEGR 136

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 48/185 (25%)

Query: 28  PGGESFALLC----EAQENMWFKFIEGSSRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGK 82
           P  +   + C     A E       EGS   V  P   +R+ +V     I +     +G+
Sbjct: 16  PKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVK--FYIPDMNSRMAGQ 71

Query: 83  YLCVVNNSVGG----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           Y C+             ++  L VT                            +P L+  
Sbjct: 72  YSCIYRVGELWSEPSNLLD--LVVTEMYD------------------------TPTLSVH 105

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----VFRIDSVRKEDK 193
             P V +   G    F C+ +         +K+G+              F +  V    +
Sbjct: 106 PGPEVIS---GEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHR 161

Query: 194 GMYQC 198
           G Y+C
Sbjct: 162 GTYRC 166

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 33/255 (12%), Positives = 61/255 (23%), Gaps = 60/255 (23%)

Query: 30  GESFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           G    L C  +        +K  E              +    +  +       +G Y C
Sbjct: 38  GGHVTLRCHYRHRFNNFMLYK--EDRIH----IPIFHGRIFQESFNMSPVTTAHAGNYTC 91

Query: 86  VVNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
             ++          S   V+ VT                             P L A   
Sbjct: 92  RGSHPHSPTGWSAPSNPVVIMVTGNHR------------------------KPSLLAHPG 127

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK 190
           P V++   G      C  +          K+G                ++  F I  +  
Sbjct: 128 PLVKS---GERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMML 183

Query: 191 EDKGMYQCVIRNEQESAQASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
              G Y+C         Q S      ++ + G ++ P +        +  G +    C +
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSS 242

Query: 246 SGNPTPEISWYLDGK 260
             +         +G 
Sbjct: 243 RSSYDM-YHLSREGG 256

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 36/192 (18%), Positives = 53/192 (27%), Gaps = 47/192 (24%)

Query: 28  PGGESFALLCEA-QENMWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           P  +   L C+       ++     SSR           Q    L I   K   +G+Y C
Sbjct: 20  PLEKPVTLRCQGPPGVDLYRLEKLSSSRY----------QDQAVLFIPAMKRSLAGRYRC 69

Query: 86  VVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
              N       S +  L  T                             P L+A   P V
Sbjct: 70  SYQNGSLWSLPSDQLELVATGVF------------------------AKPSLSAQPGPAV 105

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQC 198
            +   G      C+         +  K+G P P  N        F I +V     G Y+C
Sbjct: 106 SS---GGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161

Query: 199 VIRNEQESAQAS 210
              + ++    S
Sbjct: 162 YSFSSRDPYLWS 173

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
             +   +P    C+     V      K        ++ V  I ++++   G Y+C  +N 
Sbjct: 17  SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNG 74

Query: 204 QESAQASG--ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
              +  S   EL   G F  P +        ++ G +   +C  +     + + Y +G  
Sbjct: 75  SLWSLPSDQLELVATGVFAKPSLSAQPG-PAVSSGGDVTLQCQ-TRYGFDQFALYKEGDP 132

Query: 262 L 262
            
Sbjct: 133 A 133

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 18/78 (23%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------- 183
            + +T+  G      C+ + +   ++ W    +      E                    
Sbjct: 45  TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS 104

Query: 184 -RIDSVRKEDKGMYQCVI 200
             I +V   D+G Y C I
Sbjct: 105 ISISNVALADEGEYTCSI 122

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 30  GESFALLCEAQEN------MWFK--------FIEGSSRKVAVPLNDRVK--QVSGTLIIK 73
           G +  L              WF         +    S+        RV+    SG L I 
Sbjct: 19  GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78

Query: 74  EAKVEDSGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQ 115
           + + ED+  Y+  V    G E    + L V  P+    +P ++
Sbjct: 79  KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP---KPVIK 118

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
             I +G      C+      +     K+  P P          N+  F I S+ ++  G 
Sbjct: 14  SVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72

Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
           Y+C  R+    +Q S  L+L   G +  P +    S   +  G +    C  S +P    
Sbjct: 73  YRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTF 130

Query: 254 SWYLDGKK 261
               +   
Sbjct: 131 LLCKERAA 138

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 35/202 (17%), Positives = 54/202 (26%), Gaps = 53/202 (26%)

Query: 28  PGGESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSG---TLIIKEAKVEDS 80
             G S  + C    EA+E    K  E S      P + +            I     + +
Sbjct: 17  SWGNSVTIWCQGTLEAREYRLDK--EESP----APWDRQNPLEPKNKARFSIPSMTEDYA 70

Query: 81  GKYLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
           G+Y C   + VG    S    L +T                             P L+A 
Sbjct: 71  GRYRCYYRSPVGWSQPSDPLELVMTGAY------------------------SKPTLSAL 106

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSV 188
             P V +   G+     C+       T    K+    P            ++  F +  V
Sbjct: 107 PSPLVTS---GKSVTLLCQSRSPMD-TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV 162

Query: 189 RKEDKGMYQCVIRNEQESAQAS 210
                G Y+C   +       S
Sbjct: 163 TSVHGGTYRCFSSHGFSHYLLS 184

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 13/127 (10%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
             I  G      C+      +    +K+G P P          N+  F I S+ +   G 
Sbjct: 14  SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGR 72

Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
           Y+C   +    ++ S  L+L   G ++ P +    S   +  G N   +C  S       
Sbjct: 73  YRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRF 130

Query: 254 SWYLDGK 260
               +G 
Sbjct: 131 ILTEEGD 137

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 63/241 (26%)

Query: 24  RFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
            +K    +    + E   +        + R  A+    R+K    +L +   ++E++G+Y
Sbjct: 43  FWKSLTFDKEVKVFEFFGDHQ-----EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEY 97

Query: 84  LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
            C V  +         L V A       P  +               +            
Sbjct: 98  RCEVVVTPLKAQGTVQLEVVAS------PASR---------------LLLD--------- 127

Query: 144 QTIDFGRPAQFTCKYEG-NPVK-TISWMKDGKPVPDHNEPV------------------- 182
           Q        ++ C+  G  P    I+W K  +  P   E                     
Sbjct: 128 QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVT 187

Query: 183 --FRIDSVRKEDKGMYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238
              +++S +++   +YQCV+R+       +++  L         + +   +D       +
Sbjct: 188 SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAAR---HSLSETEKTDNFSAAAHH 244

Query: 239 Y 239
           +
Sbjct: 245 H 245

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 10/130 (7%), Positives = 34/130 (26%), Gaps = 6/130 (4%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK-EDKGMYQ 197
           V P    ++     +  C    N  +          +    +  ++   V       + Q
Sbjct: 7   VRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQ 66

Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEIS 254
           C      +    +  + +       ++  +     +  G ++  +C         +  + 
Sbjct: 67  CHFTCSGKQESMNSNVSVYQPPRQVIL--TLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124

Query: 255 WYLDGKKLVN 264
            +   + L  
Sbjct: 125 LFRGNETLHY 134

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 45/197 (22%)

Query: 30  GESFALLCEA-QENMWFK-FIEGSSRKVAVPLNDRVKQVSG---TLIIKEAKVEDSGKYL 84
           G    L C+  QE   ++ + E  +     P   R+ Q         I     E +G+Y 
Sbjct: 19  GSPVTLRCQGGQETQEYRLYREKKTA----PWITRIPQELVKKGQFPIPSITWEHTGRYR 74

Query: 85  CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
           C   +   G S  +      PL   V                      P L+A   P V 
Sbjct: 75  CYYGSDTAGRSESS-----DPLELVVTGAYIK----------------PTLSAQPSPVVN 113

Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDK 193
           +   G      C  +          K+G+                   +F +  V    +
Sbjct: 114 S---GGNVTLQCDSQVAFD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRR 169

Query: 194 GMYQCVIRNEQESAQAS 210
             Y+C   +     + S
Sbjct: 170 WWYRCYAYDSNSPYEWS 186

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 14/128 (10%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
             I  G P    C+      +     ++ K  P           +  F I S+  E  G 
Sbjct: 14  SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR 72

Query: 196 YQCVIRNEQESAQASG---ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
           Y+C   ++      S    EL + G +  P +    S   +N G N   +C  S      
Sbjct: 73  YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDG 130

Query: 253 ISWYLDGK 260
                +G+
Sbjct: 131 FILCKEGE 138

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKG 194
           V P+   +  G     TC    +  K +       K    +P +N  V+ + +V+++   
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--S 61

Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTP-- 251
              C        + A   L +    +   +  +        G     +C +  G P    
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTVYWTPERVEL--APLPSWQPVGKQLTLRCQVEGGAPRAQL 119

Query: 252 EISWYLDGKKLVN 264
            +      K+L  
Sbjct: 120 TVVLLRGEKELKR 132

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} Length = 82

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESA 207
           G   + TC  + +    + W K+G+ +P  ++    +      ED G Y C      ++ 
Sbjct: 14  GTSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 44  WFK-------FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVGG-E 94
           W +               ++    DRV       L ++   V D+G+Y C+ +    G  
Sbjct: 39  WEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTY 98

Query: 95  SVETVLTVTAP 105
           +    L V   
Sbjct: 99  TGRIFLEVLES 109

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 7/69 (10%)

Query: 44  WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
           WFK          G+        N      +  L I +  + D G Y   V      +S 
Sbjct: 49  WFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSC 108

Query: 97  ETVLTVTAP 105
              + V AP
Sbjct: 109 GFNIDVEAP 117

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} Length = 135

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)

Query: 97  ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA---------AGVEPTVQTID 147
           ++++TV           V+    G   +  C Y+++             A  + + +   
Sbjct: 2   QSIMTVRTT-----HTEVEVHA-GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFK 55

Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
                Q                 D      V +   P  R+  V  +D G Y C +    
Sbjct: 56  GNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWS 115

Query: 205 ESAQASGELK 214
              +   + K
Sbjct: 116 IRTEFGLDAK 125

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 26/220 (11%), Positives = 48/220 (21%), Gaps = 49/220 (22%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNS------VGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
           ++ I      D+G Y CV              +   +     P A  V            
Sbjct: 75  SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134

Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV 182
             FTC        + G  P                       T+ W K+G  + D    V
Sbjct: 135 VSFTC-------ESHGFSP--------------------RDITLKWFKNGNELSDFQTNV 167

Query: 183 F--------------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
                          ++   R++      C + +                          
Sbjct: 168 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV 227

Query: 229 SDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVNAE 266
           + + +         C      P   +++W  +G       
Sbjct: 228 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTET 267

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----ELKLGGRFDP 221
           +    G+     ++  F I  + ++  G Y+C         Q S      ++ + G ++ 
Sbjct: 49  TLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEK 108

Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
           P +  +    T+  G N    C +S +         +G+
Sbjct: 109 PSL-SAQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGE 145

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} Length = 124

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
           + D  K  + T+ +++    D+  Y C +  +     V   +T+        E +  
Sbjct: 66  IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETSSS 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 32/191 (16%), Positives = 47/191 (24%), Gaps = 55/191 (28%)

Query: 5   DLKPV-GFKAPTFSS--VSDIIRFKKPGGES-----FALLCEAQENMWFKFIEGSSRK-- 54
           D K V        S   +  II        S     F  L   QE M  KF+E   R   
Sbjct: 34  DCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 55  --VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
             +  P+    +Q S            +  Y+   +       V     V+         
Sbjct: 92  KFLMSPIKTEQRQPSM----------MTRMYIEQRDRLYNDNQVFAKYNVS--------- 132

Query: 113 TVQTIDFGRPAQF----TCKYEISPPLA------AGVEPTVQTIDFGRPAQFTCKYEGNP 162
                   R   +        E+ P          G   T   +D     +  CK +   
Sbjct: 133 --------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK- 183

Query: 163 VKTISWMKDGK 173
              I W+    
Sbjct: 184 ---IFWLNLKN 191

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDK 193
             +         C  +      +   ++GK               ++  F I  + ++  
Sbjct: 16  PLVKSEETVILQCWSDVRFQHFL-LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74

Query: 194 GMYQCVIRNEQESAQASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
           G Y+C         Q S      ++ + G ++ P +       T+  G +    C +S +
Sbjct: 75  GTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRS 132

Query: 249 PTPEISWYLDGK 260
                    +G+
Sbjct: 133 SYDMYHLSREGE 144

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           L +  +  +  + I +   +DSG+Y C +  +  G S +  L V 
Sbjct: 66  LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 56  AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
              L + + +    L I+  +  D G Y C   +    E     L V  P
Sbjct: 73  TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 11/69 (15%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI---------DSVRKEDKGMYQCV 199
           G     TC     P   I W  + K +    +              +    E  G Y C 
Sbjct: 21  GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78

Query: 200 IRNEQESAQ 208
            R  +    
Sbjct: 79  PRGSKPEDA 87

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 32/135 (23%)

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
           GT  +   +    G YL  ++       V   L V  P      P V             
Sbjct: 254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKP------PKVS------------ 295

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVK--TISWMKDGKPVPDH--NEPV 182
              + P          +      P +  C      P     + W   G P       E  
Sbjct: 296 ---LMPA------TLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQ 346

Query: 183 FRIDSVRKEDKGMYQ 197
             + ++R    G   
Sbjct: 347 RWLSALRHHSDGSVS 361

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 61  DRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
            RV   + +G L I   + ED G Y   V        ++  L V  P+
Sbjct: 64  GRVYLEENNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEVFDPV 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.98
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.98
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.98
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.93
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.93
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.92
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.92
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.92
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.92
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.91
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.91
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.9
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.9
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.9
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.9
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.9
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.9
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.9
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.9
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.89
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.89
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.89
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.89
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.89
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.89
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.89
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.88
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.88
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.88
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.88
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.88
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.88
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.88
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.87
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.87
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.87
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.87
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.87
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.87
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.87
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.86
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.86
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.86
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.86
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.86
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.86
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.85
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.85
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.85
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.85
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.85
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.85
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.85
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.85
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.85
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.85
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.85
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.85
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.84
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.84
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.84
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.84
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.84
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.84
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.84
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.84
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.84
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.84
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.83
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.83
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.83
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.83
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.83
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.83
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.83
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.83
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.83
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.83
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.83
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.83
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.83
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.83
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.83
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.83
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.82
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.82
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.82
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.82
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.82
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.82
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.82
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.82
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.82
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.82
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.82
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.82
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.81
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.81
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.81
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.81
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.81
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.81
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.8
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.8
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.8
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.8
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.8
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.8
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.8
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.8
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.8
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.79
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.79
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.79
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.79
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.79
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.79
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.79
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.78
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.78
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.78
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.78
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.78
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.78
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.78
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.78
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.78
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.78
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.78
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.78
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.78
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.78
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.77
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.77
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.77
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.77
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.77
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.77
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.77
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.77
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.77
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.77
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.76
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.76
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.76
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.76
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.76
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.76
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.75
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.75
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.75
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.75
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.75
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.75
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.75
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.75
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.75
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.75
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.74
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.74
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.74
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.74
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.74
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.74
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.74
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.74
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.74
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.73
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.72
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.72
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.71
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.71
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.71
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.71
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.71
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.7
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.7
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.7
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.7
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.7
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.7
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.7
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.7
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.69
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.69
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.69
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.68
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.68
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.68
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.68
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.67
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.67
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.67
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.67
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.67
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.66
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.66
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.66
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.66
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.66
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.66
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.65
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.65
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.65
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.65
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.65
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.65
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.65
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.65
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.64
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.64
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.63
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.63
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.63
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.63
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.63
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.63
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.63
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.62
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.62
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.62
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.62
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.61
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.61
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.61
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.61
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.61
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.61
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.6
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.6
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.6
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.6
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.6
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.6
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.59
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.59
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.59
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.59
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.59
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.59
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.58
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.58
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.58
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.58
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.58
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.58
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.58
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.58
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.58
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.57
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.57
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.57
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.57
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.57
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.57
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.56
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.56
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.56
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.56
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.56
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.56
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.56
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.56
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.55
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.55
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.55
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.55
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.54
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.54
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.53
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.53
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.53
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.52
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.52
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.52
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.52
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.52
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.51
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.51
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.51
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.51
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.51
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.51
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.51
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.51
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.5
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.5
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.5
2ens_A	96	Advanced glycosylation END product-specific recept	99.5
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.5
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.5
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.49
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.49
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.49
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.49
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.49
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.49
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.48
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.48
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.48
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.48
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.47
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.47
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.47
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.46
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.46
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.46
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.46
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.46
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.46
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.45
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.45
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.45
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.45
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.45
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.44
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.44
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.44
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.44
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.44
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.43
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.43
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.42
1he7_A	126	High affinity nerve growth factor receptor; transf	99.42
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.42
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.41
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.41
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.41
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.41
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.41
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.4
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.4
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.4
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.39
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.39
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.39
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.39
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.39
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.38
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.38
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.38
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.38
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.37
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.37
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.36
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.36
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.36
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.35
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.35
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.35
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.34
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.34
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.34
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.33
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.33
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.33
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.32
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.32
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.32
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.32
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.32
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.32
2ens_A	96	Advanced glycosylation END product-specific recept	99.32
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.31
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.31
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.31
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.31
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.31
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.3
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.3
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.3
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.3
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.3
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.29
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.29

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.1e-33  Score=219.08  Aligned_cols=221  Identities=23%  Similarity=0.389  Sum_probs=176.3

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..||.|...+  .+..+.+|+++.|.|.+.+     +.|++++....  ...............|.|.+++..|+|.|+|
T Consensus         3 ~~pP~~~~~p--~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            3 MAPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCCEEEECC--CCEEEETTCCEEEEEEEESSSCCEEEEEETTEECC--SSSSEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCEEEccc--cceEecCCCcEEEEEEEEcCCCCEEEEEECCEECc--CCCcEEEEEcCCEEEEEEecCCcccCEEEEE
Confidence            4689998888  7889999999999999987     99999633211  1101111111235689999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .+.|..+..+..+.|.|..++......                            .....+.+|+.+.|.|.+.+.|.+.
T Consensus        79 ~~~n~~g~~~~~~~l~V~~~p~~~~~~----------------------------~~~~~v~~g~~~~l~C~~~g~p~~~  130 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQEPPRFIKKL----------------------------EPSRIVKQDEHTRYECKIGGSPEIK  130 (284)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEECC----------------------------CSEEEEETTCCEEEEEEEESSSCCE
T ss_pred             EEEECCceEEEEEEEEccCCCcccccC----------------------------CCceEecCCceEEEEEEEeeeCCCE
Confidence            999998888888888887654422211                            1223578899999999999999999


Q ss_pred             EEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecC
Q psy3045         166 ISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG  236 (267)
Q Consensus       166 ~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g  236 (267)
                      +.|++++..+....         ...|.|.++..+|+|.|+|.+.|..+.......+.|.   .+|.+...+....+.+|
T Consensus       131 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~~~~~~~~~g  207 (284)
T 2rik_A          131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLKG  207 (284)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE---CCCBCCSCCCCEEECTT
T ss_pred             EEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe---cCCcceeCCCcceecCC
Confidence            99999998876442         3568999999999999999999999887777777776   57888777777788999


Q ss_pred             CcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         237 PNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       237 ~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+.|.|.+.|.|.|.+.|+++|+.+..+.
T Consensus       208 ~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~  237 (284)
T 2rik_A          208 ADVHLECELQGTPPFQVSWHKDKRELRSGK  237 (284)
T ss_dssp             CCEEEEEECBSSSCCEEEEEETTEEECBTT
T ss_pred             CeEEEEEEEEecCCCEEEEEECCEECcCCC
Confidence            999999999999999999999999887553

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.4e-33  Score=217.86  Aligned_cols=224  Identities=26%  Similarity=0.435  Sum_probs=171.0

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE------EeeEEEEeeccc-
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ------VSGTLIIKEAKV-   77 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~-   77 (267)
                      +..||.|...+  .+..+.+|+++.|.|.+.+     +.|++++....       ..+...      ....|.|.+++. 
T Consensus         3 ~~~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~-------~~~~~~~~~~~~~~~~L~i~~~~~~   73 (304)
T 2yd9_A            3 GEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-------SQRFETIEFDESAGAVLRIQPLRTP   73 (304)
T ss_dssp             -CCCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEC--------------CTTEEEEEETTTTEEEEEECSCCTT
T ss_pred             CccCCeeeecC--CceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC-------CCceEEEEecCCCceEEEEeccccc
Confidence            46789999888  7899999999999999987     99999643221       112111      125799999998 


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccC-CceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE-PTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .|+|.|+|.+.|..|.....+.|.|...+..... +..                       ...+....+..|+.+.|.|
T Consensus        74 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i-----------------------~~~~~~~~v~~g~~v~l~C  130 (304)
T 2yd9_A           74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI-----------------------DMGPQLKVVERTRTATMLC  130 (304)
T ss_dssp             TTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEE-----------------------EECCCCEEEETTSCEEECC
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCee-----------------------ecCCccEEEeCCCeEEEEE
Confidence            9999999999999888777888888765332111 111                       1122334788899999999


Q ss_pred             EeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE-EEEEEecccCCCeeec
Q psy3045         157 KYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-GELKLGGRFDPPVIKE  226 (267)
Q Consensus       157 ~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~p~~~~  226 (267)
                      .+.+.|.+.+.|++++..+...         ....|.|.++..+|+|.|+|.|.|..+..... ..+.+.+...+|.+..
T Consensus       131 ~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~  210 (304)
T 2yd9_A          131 AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI  210 (304)
T ss_dssp             EEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEE
T ss_pred             ECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEe
Confidence            9999999999999999876532         34589999999999999999999988765432 4566654445788887


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+
T Consensus       211 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          211 LPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             CCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCS
T ss_pred             cCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCc
Confidence            777778899999999999999999999999999998754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3e-32  Score=230.41  Aligned_cols=222  Identities=23%  Similarity=0.404  Sum_probs=175.1

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE--EE--EeeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV--KQ--VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~G   81 (267)
                      ..||.|...+  .++.+.+|+++.|.|.+.+     +.|+|++....      ...+.  ..  ...+|.|.++..+|+|
T Consensus         3 ~~pP~f~~~~--~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~G   74 (570)
T 3b43_A            3 MEPPYFIEPL--EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR------SAPAYKMQFKNNVASLVINKVDHSDVG   74 (570)
T ss_dssp             CCCCEEEECC--CCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCC------CCSSEEEECCTTEEEEEESSCCGGGCE
T ss_pred             CCCCcceEEC--CceEEcCCCEEEEEEEEccCCCCEEEEEECCEEcc------CCCCEEEEEECCEEEEEEccCChhhCE
Confidence            4689998776  7899999999999999987     99999743221      11222  11  2368999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      .|+|.+.|..|.......+.|.....   .+                       .+........+..|+.+.|.|.+.|.
T Consensus        75 ~Y~C~a~N~~g~~~~~~~l~v~~~~~---~p-----------------------~~~~~~~~~~~~~G~~v~l~C~~~g~  128 (570)
T 3b43_A           75 EYTCKAENSVGAVASSAVLVIKERKL---PP-----------------------SFARKLKDVHETLGFPVAFECRINGS  128 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECCCCC---CC-----------------------EESSCCCCEEEETTSCEEEEEEEESS
T ss_pred             EEEEEEEeCCceEEEEEEEEECCCCC---CC-----------------------cccccCCCeEecCCCeEEEEEEEccC
Confidence            99999999988766666666643211   00                       01111223367789999999999999


Q ss_pred             CCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeE
Q psy3045         162 PVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET  232 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~  232 (267)
                      |++.+.|+++|..+....         ...|.|..+..+|+|.|+|.|.|..+....+..+.+.....+|.+...+....
T Consensus       129 p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~  208 (570)
T 3b43_A          129 EPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD  208 (570)
T ss_dssp             SSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBC
T ss_pred             CCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeE
Confidence            999999999998886432         25788999999999999999999998887788888876556888888887778


Q ss_pred             EecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       233 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+|+.+.|.|.+.|.|+|.+.|+|+|+.+..+.
T Consensus       209 v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~  242 (570)
T 3b43_A          209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGG  242 (570)
T ss_dssp             CBSBSCEEEEEEEESSSCCEEEEEETTEECCTTS
T ss_pred             ecCCCeEEEEEEEEECCCCEEEEEECCEECcCCC
Confidence            8999999999999999999999999999987543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.6e-31  Score=225.98  Aligned_cols=213  Identities=23%  Similarity=0.388  Sum_probs=172.3

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE--E--EEeeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV--K--QVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~d~G   81 (267)
                      ..+|.|..... ....+.+|+.+.|.|.+.+     +.|++++...      ....++  .  .....|.|.+++.+|+|
T Consensus       288 ~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l------~~~~~~~~~~~~~~~~L~i~~v~~~D~G  360 (570)
T 3b43_A          288 QEPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI------QESSKFRMSFVESVAVLEMYNLSVEDSG  360 (570)
T ss_dssp             BCCCEEEECCC-SBCCEESSCEEEEEEEEESSSSCEEEEEETTEEC------CCSSSEEEEEETTEEEEEEESCCGGGCE
T ss_pred             ecCCcccccCC-CccEEcCCCcEEEEEEEeeCCCCEEEEeECCEEC------CCCCcEEEEEECCEEEEEECCCCcccCE
Confidence            44677665442 3456889999999999988     9999963321      111221  1  12457999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      .|+|.|.|..|.......|.|..++.+...+..                             ..+.+|+.+.|.|.+.|.
T Consensus       361 ~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~-----------------------------~~~~~G~~v~l~C~~~g~  411 (570)
T 3b43_A          361 DYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-----------------------------VETLKGADVHLECELQGT  411 (570)
T ss_dssp             EEEEEEEBTTBCCEEEEEECEECCCEECSCCCC-----------------------------EEECTTCCEEEEEEEESS
T ss_pred             EEEEEEEeCCCEEEEEEEEEecCCCeeecCCCc-----------------------------eeecCCCEEEEEEEEecC
Confidence            999999999999888889988876654443332                             267789999999999999


Q ss_pred             CCceEEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeE
Q psy3045         162 PVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET  232 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~  232 (267)
                      |.+.+.|++++..+..+..         ..|.|.++..+|+|.|+|.|.|..|.......+.+.   .+|.+...+.+..
T Consensus       412 P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~---~~P~~~~~~~~~~  488 (570)
T 3b43_A          412 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK---APPRFVKKLSDIS  488 (570)
T ss_dssp             SSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC---CCCEEEECCCCBC
T ss_pred             CCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec---cCCcccccCCCce
Confidence            9999999999988764422         468899999999999999999999988888888776   6888888888888


Q ss_pred             EecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         233 LNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       233 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      +.+|+.+.|.|.+.|.|++.+.|+++|..+
T Consensus       489 ~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~  518 (570)
T 3b43_A          489 TVVGEEVQLQATIEGAEPISVAWFKDKGEI  518 (570)
T ss_dssp             CBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred             ecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence            899999999999999999999999998654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=2e-31  Score=207.08  Aligned_cols=215  Identities=27%  Similarity=0.408  Sum_probs=161.0

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G   81 (267)
                      ||.|...|  .+..+.+|+++.|.|.+.+      +.|++.+. ....   ....++..     ....|.|.+++.+|+|
T Consensus         2 ~~~v~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g-~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (291)
T 1qz1_A            2 VLQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNG-EKLS---PNQQRISVVWNDDDSSTLTIYNANIDDAG   75 (291)
T ss_dssp             CCCEEEES--SSEEEETTCCEEEEEEESSCCSCCEEEEECTTS-CBCC---SSCSSEEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CcceEecC--CCceEeCCCeEEEEEEeCCCCCCcEeEEECCCC-eECc---cCCceEEEEEcCCCeEEEEEecCCCCCCE
Confidence            56777777  7888999999999999887      99998311 1111   11222222     2468999999999999


Q ss_pred             eEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        82 ~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      .|+|.+.+..+. .+..+.|.|..++.....+                             ....+.+|+.+.|.|.+.+
T Consensus        76 ~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~-----------------------------~~~~~~~g~~v~l~C~~~~  126 (291)
T 1qz1_A           76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP-----------------------------TPQEFKEGEDAVIVCDVVS  126 (291)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEECCSEEEECC-----------------------------SSEEEETTSCEEECCEEEC
T ss_pred             EEEEEEEcCCCCeeEEEEEEEeeccccccCCC-----------------------------CcccccCCCeEEEEEEecc
Confidence            999999998865 4566667766544322222                             2236788999999999999


Q ss_pred             CCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE--EEEEEEecccCCCeeecCCc-
Q psy3045         161 NPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA--SGELKLGGRFDPPVIKESFS-  229 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v~~~~~~p~~~~~~~-  229 (267)
                      .|.+.+.|++++..+...        ....|.|.++..+|+|.|+|.+.|..+....  ...+.+.   .+|.+..... 
T Consensus       127 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~---~~p~~~~~~~~  203 (291)
T 1qz1_A          127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN---VPPTVQARQSI  203 (291)
T ss_dssp             SSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE---EEEEEEESCSE
T ss_pred             CCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe---cCCcccccccc
Confidence            999999999999876432        3467999999999999999999987644333  3444443   3555554433 


Q ss_pred             -eeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         230 -DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       230 -~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                       ...+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+
T Consensus       204 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~  240 (291)
T 1qz1_A          204 VNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE  240 (291)
T ss_dssp             EEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             cccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence             446778999999999999999999999999998765

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=8.3e-32  Score=217.24  Aligned_cols=246  Identities=24%  Similarity=0.438  Sum_probs=175.0

Q ss_pred             CCCcccCCCCceeEEe---cCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeec-ccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKK---PGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEA-KVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v---~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~   82 (267)
                      .+|.|...|  .+..+   .+|+++.|.|.+.+     +.|++++....    .....++...++.|.|.+. ..+|+|.
T Consensus         4 ~~P~f~~~P--~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~----~~~~~~~~~~~g~l~i~~~~~~~D~G~   77 (384)
T 3kld_A            4 SGPVFVQEP--SHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD----IGMDFRYSVVDGSLLINNPNKTQDAGT   77 (384)
T ss_dssp             EEEEEEECC--CCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECC----C----CEEEETTEEEEESCCHHHHCEE
T ss_pred             CCCEEEeCC--cceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECc----CCCCccEEEECCEEEEcCCCCcccCEE
Confidence            468888887  55555   68999999999987     99999643221    1123344555667888776 7789999


Q ss_pred             EEEEEEcCCCcc-EEEEEEEEEecccccc-CCceEEEeCCCceEEEEE--------------------------------
Q psy3045          83 YLCVVNNSVGGE-SVETVLTVTAPLAAGV-EPTVQTIDFGRPAQFTCK--------------------------------  128 (267)
Q Consensus        83 Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~-~~~~~~~~~~~~~~~~c~--------------------------------  128 (267)
                      |+|.|.|..|.. +....+.+...+.... .........|..+.|.|.                                
T Consensus        78 Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  157 (384)
T 3kld_A           78 YQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG  157 (384)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTC
T ss_pred             EEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCC
Confidence            999999998763 3344555543322221 112233444555555553                                


Q ss_pred             ------------------eecCC--------Cc----------------ccccCCceEEEecCCCEEEEeEeCCCCCceE
Q psy3045         129 ------------------YEISP--------PL----------------AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI  166 (267)
Q Consensus       129 ------------------~~~~~--------~~----------------~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~  166 (267)
                                        +....        +.                .....+....+.+|+.+.|.|.+.|.|.|.+
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence                              22110        00                0011233445778999999999999999999


Q ss_pred             EEEEC-CccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEE
Q psy3045         167 SWMKD-GKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY  240 (267)
Q Consensus       167 ~W~~~-~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~  240 (267)
                      .|+++ +..+..     .....|.|.++..+|+|.|+|.|.|..|.......+.+.   .+|.+...+.+..+.+|+.+.
T Consensus       238 ~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~---~~P~~~~~~~~~~v~~g~~v~  314 (384)
T 3kld_A          238 LWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY---AQPNWVQIINDIHVAMEESVF  314 (384)
T ss_dssp             EEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE---EEEEEEECCCCEEECTTCCEE
T ss_pred             EEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe---cCCccccCCCceEecCCCCEE
Confidence            99995 444432     235689999999999999999999999888878888776   467777777778899999999


Q ss_pred             EEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         241 FKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       241 l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      |.|.+.|.|.|.|.|+|||+.+..++
T Consensus       315 l~C~~~g~P~p~i~W~k~g~~l~~~~  340 (384)
T 3kld_A          315 WECKANGRPKPTYRWLKNGDPLLTRD  340 (384)
T ss_dssp             EECEEEEESCCEEEEEETTEECCCBT
T ss_pred             EEeECCccCCCeEEEEECCEECCCCc
Confidence            99999999999999999999987654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-31  Score=204.85  Aligned_cols=218  Identities=25%  Similarity=0.413  Sum_probs=161.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y   83 (267)
                      .+|.|...+  .+..+.+|+++.|.|.+.+    +.|++++. ..    +....++...    ...|.|.+++.+|+|.|
T Consensus         3 ~~p~v~~~~--~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g-~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   75 (291)
T 2wim_A            3 ALLQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQG-EK----IISTQRVVVQKEGVRSRLTIYNANIEDAGIY   75 (291)
T ss_dssp             CCCEEEESC--SEEEEETTCCEEEEEEEESCCSEEECBCTTC-CB----CCCBTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CCceEEEec--cceEecCCCcEEEEEEEeCCCCceEEECCCC-cC----ccCCCcEEEecCCCEEEEEEccCCcccCEEE
Confidence            468888888  7899999999999999998    99998422 11    1122333221    25899999999999999


Q ss_pred             EEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          84 LCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        84 ~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      +|.+.+..|.. ...+.|.|...+.....+.                             ...+.+|+.+.|.|.+.+.|
T Consensus        76 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~-----------------------------~~~v~~G~~v~l~C~~~~~p  126 (291)
T 2wim_A           76 RCQATDAKGQTQEATVVLEIYQKLTFREVVS-----------------------------PQEFKQGEDAEVVCRVSSSP  126 (291)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECCCBCCSCCC-----------------------------SEEEETTSCEEECCCCBCSS
T ss_pred             EEEEecccCceEEEEEEEEecCCcceEeCCC-----------------------------ChhhcCCCCEEEEEEEccCC
Confidence            99999988774 4566677765544333222                             22678899999999999999


Q ss_pred             CceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCc--eeE
Q psy3045         163 VKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS--DET  232 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~--~~~  232 (267)
                      .+.+.|++++..+...        ....|.|.++..+|+|.|+|.+.+..+.......+.+.+. .+|.+.....  ...
T Consensus       127 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~-~~p~~~~~~~~~~~~  205 (291)
T 2wim_A          127 APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-VPPAISMPQKSFNAT  205 (291)
T ss_dssp             CCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-BCCCCBCSCSEEECC
T ss_pred             CCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec-cCCccccCcccccce
Confidence            9999999998876531        3467999999999999999999998755443333333332 4566555443  345


Q ss_pred             EecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       233 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+.
T Consensus       206 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~  239 (291)
T 2wim_A          206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENE  239 (291)
T ss_dssp             SSSCCEEEEECBCCCBSCCEEEEEETTEECCCTT
T ss_pred             ecCCCeEEEEEEeecCCCCeEEEEECCEECcCCc
Confidence            7789999999999999999999999999987653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=8.6e-31  Score=213.31  Aligned_cols=240  Identities=14%  Similarity=0.205  Sum_probs=159.7

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +.+...+  .++.|.+|+++.|.|.+.+     +.|++++.............+   ...+|.|.+++.+|+|.|+|.|.
T Consensus        49 ~~~~~~~--~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           49 SGTVYEA--AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             ---------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             Ccceecc--ccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccc---eEEEEEEeecCcccCEEEEEEEE
Confidence            3444455  5899999999999999998     899986321111111111111   12369999999999999999999


Q ss_pred             cCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcc--------------------------------
Q psy3045          89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA--------------------------------  136 (267)
Q Consensus        89 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------------------------------  136 (267)
                      |..|.....+.|.|..++.... ........+..+.|.|.+.+.|++.                                
T Consensus       124 N~~g~~~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d  202 (423)
T 3qs7_E          124 SEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELF  202 (423)
T ss_dssp             C--CEEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCC
T ss_pred             cCCCcEEEEEEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEeccc
Confidence            9988877777777764332210 1111122344444445443221110                                


Q ss_pred             ---------------------------cccCCceEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCCC---------
Q psy3045         137 ---------------------------AGVEPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDHN---------  179 (267)
Q Consensus       137 ---------------------------~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~~---------  179 (267)
                                                 ....+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+....         
T Consensus       203 ~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~  282 (423)
T 3qs7_E          203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST  282 (423)
T ss_dssp             SSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEET
T ss_pred             CeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccC
Confidence                                       001233567788999999999998 5678999999998875421         


Q ss_pred             ------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCC--ceeEEecCCcEEEEEEeecCCCC
Q psy3045         180 ------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTP  251 (267)
Q Consensus       180 ------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~  251 (267)
                            ...|.|.++..+|+|.|+|.|.|.   ...+..|.|.   .+|.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus       283 ~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~---~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p  356 (423)
T 3qs7_E          283 NRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV---EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI  356 (423)
T ss_dssp             TTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEE---SSCEEEEC---CEECCCTTCCCCEEEEEEEESCC
T ss_pred             CceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEE---eCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC
Confidence                  136999999999999999999998   5556667765   456555443  35567889999999999999999


Q ss_pred             cEEEEECCEEcCCC
Q psy3045         252 EISWYLDGKKLVNA  265 (267)
Q Consensus       252 ~i~W~~~~~~l~~~  265 (267)
                      .|.|+|+|+.|..+
T Consensus       357 ~i~W~k~g~~l~~~  370 (423)
T 3qs7_E          357 RCTWTFSRKSFPCE  370 (423)
T ss_dssp             EEEEEETTEEEECB
T ss_pred             eEEEEECCEECCCc
Confidence            99999999998654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.98  E-value=4.8e-31  Score=212.59  Aligned_cols=246  Identities=26%  Similarity=0.409  Sum_probs=183.4

Q ss_pred             CCCcccCCCCceeEEe---cCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc-CCCee
Q psy3045          12 KAPTFSSVSDIIRFKK---PGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v---~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~   82 (267)
                      .+|.|...|  .+..+   .+|+++.|.|.+.+     +.|++++....    .....++...+++|.|.++.. +|+|.
T Consensus         3 ~~P~~~~~p--~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~----~~~~~~~~~~~~~L~i~~~~~~~D~G~   76 (382)
T 1cs6_A            3 YGPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK----MGPDSRYRLVAGDLVISNPVKAKDAGS   76 (382)
T ss_dssp             EEEEEEECC--CCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECC----CSTTSSEEEETTEEEEESCCHHHHCEE
T ss_pred             CCCEEEECC--CcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECC----cCCCccEEeeCCeEEEecccccccCEE
Confidence            478898888  55555   79999999999986     99999643211    112345556677899999987 99999


Q ss_pred             EEEEEEcCCCcc-EEEEEEEEEecccccc-CCceEEEeCCCceEEEEEeecC----------------------------
Q psy3045          83 YLCVVNNSVGGE-SVETVLTVTAPLAAGV-EPTVQTIDFGRPAQFTCKYEIS----------------------------  132 (267)
Q Consensus        83 Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~----------------------------  132 (267)
                      |+|.+.|..|.. +....|.|...+.... .........|..+.|.|.+...                            
T Consensus        77 Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  156 (382)
T 1cs6_A           77 YQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT  156 (382)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTT
T ss_pred             EEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecC
Confidence            999999987753 3345666654433222 2334445566666666653210                            


Q ss_pred             ------------------------C-------------------------CcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045         133 ------------------------P-------------------------PLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus       133 ------------------------~-------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                                              .                         |......+....+.+|+.+.|.|.+.+.|.
T Consensus       157 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~  236 (382)
T 1cs6_A          157 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV  236 (382)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESC
T ss_pred             ceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCC
Confidence                                    0                         000001123556778999999999999999


Q ss_pred             ceEEEEECCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEE
Q psy3045         164 KTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY  240 (267)
Q Consensus       164 ~~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~  240 (267)
                      +.+.|++++..+..   .....|.|.++..+|+|.|+|.|.|..+.......+.|.   .+|.+...+....+.+|+.+.
T Consensus       237 ~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~~~  313 (382)
T 1cs6_A          237 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDWLDVITDTEADIGSDLR  313 (382)
T ss_dssp             CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE---EEEEEEECCCCEEEETTCCEE
T ss_pred             CEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEe---cCCCcccCCCccEEcCCCeEE
Confidence            99999998877653   356789999999999999999999998887777777776   467777777777899999999


Q ss_pred             EEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         241 FKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       241 l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      |.|.+.|.|.|.+.|+++|+.+..++
T Consensus       314 l~C~~~g~p~p~v~W~~~g~~~~~~~  339 (382)
T 1cs6_A          314 WSCVASGKPRPAVRWLRDGQPLASQN  339 (382)
T ss_dssp             EECEEEEESCCEEEEEETTEECCCCS
T ss_pred             EEEEeeeecCCEEEEEECCEECCCCc
Confidence            99999999999999999999987654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.98  E-value=9.5e-31  Score=229.94  Aligned_cols=225  Identities=67%  Similarity=1.129  Sum_probs=185.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+|.+...+......+.+|+++.|.|.+.+     +.|++++++...........++...+++|.|.+++.+|+|.|+|.
T Consensus       245 ~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~  324 (816)
T 3dmk_A          245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV  324 (816)
T ss_dssp             CCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEE
T ss_pred             CCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEE
Confidence            356665554335688999999999999988     999997665554445556667766778999999999999999999


Q ss_pred             EEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceE
Q psy3045          87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI  166 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~  166 (267)
                      +.|..|.......|.|..++.....+                             ....+.+|+.+.|.|.+.+.|.+.+
T Consensus       325 a~n~~g~~~~~~~l~V~~~~~~~~~~-----------------------------~~~~v~~G~~v~l~C~~~g~p~~~v  375 (816)
T 3dmk_A          325 VNNSVGGESVETVLTVTAPLSAKIDP-----------------------------PTQTVDFGRPAVFTCQYTGNPIKTV  375 (816)
T ss_dssp             EECSSCEEEEEEEEEECEEEEEEEES-----------------------------SEEECCTTSCEEEEEEEEEECCCEE
T ss_pred             EEcCCCceEEEEEEEEcCCCceeeCC-----------------------------CceEecCCCCEEEEEEEeccCCCEE
Confidence            99999888777778777644332222                             2337888999999999999999999


Q ss_pred             EEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee
Q psy3045         167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS  246 (267)
Q Consensus       167 ~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  246 (267)
                      .|+++|..+.. ....|.|.++..+|+|.|+|.+.|..+....+..+.+.....+|.+...+....+.+|+.+.|.|.+.
T Consensus       376 ~W~k~g~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~  454 (816)
T 3dmk_A          376 SWMKDGKAIGH-SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG  454 (816)
T ss_dssp             EEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEE
T ss_pred             EEEECCEECCC-CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEe
Confidence            99999998854 45789999999999999999999998877777777776656788888877777899999999999999


Q ss_pred             cCCCCcEEEEECCEEcCCCC
Q psy3045         247 GNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       247 ~~p~~~i~W~~~~~~l~~~~  266 (267)
                      |.|.|.+.|+++|..+..++
T Consensus       455 g~p~p~v~W~~~g~~l~~~~  474 (816)
T 3dmk_A          455 GNPTPEISWELDGKKIANND  474 (816)
T ss_dssp             CSSCCEEEEEETTEECCSCT
T ss_pred             cCCCCEEEEEECCEECCCCC
Confidence            99999999999999987543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.98  E-value=8.7e-31  Score=212.48  Aligned_cols=249  Identities=24%  Similarity=0.394  Sum_probs=185.8

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEe----ecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIK----EAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~d~G   81 (267)
                      ..+|.|...+. .+..+.+|+++.|.|.+.+     +.|++++....  ............+++|.|.    +++.+|+|
T Consensus        14 ~~~P~i~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~--~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G   90 (404)
T 3p3y_A           14 TQPPTITKQSA-KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN--IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG   90 (404)
T ss_dssp             CCCCCEEEECC-TTCEECSSSCCCCCEEECCSSCCEEEEEETTEECC--GGGCSSCBCCSSSCCCBCCCTTTCCTTSSCE
T ss_pred             cCCCcccccCC-ccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEee--eecCCcceEecCCceEEEEeccCCCCccCCE
Confidence            35787776432 6788999999999999987     99999643211  1111111122234456554    78889999


Q ss_pred             eEEEEEEcCCCcc-EEEEEEEEEeccccc-cCCceEEEeCCCceEEEEEeecC-CCcc----------------------
Q psy3045          82 KYLCVVNNSVGGE-SVETVLTVTAPLAAG-VEPTVQTIDFGRPAQFTCKYEIS-PPLA----------------------  136 (267)
Q Consensus        82 ~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~-~~~~----------------------  136 (267)
                      .|+|.+.|..|.. +..+.|.|...+... ..........|+.+.|.|.+..+ +...                      
T Consensus        91 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  170 (404)
T 3p3y_A           91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN  170 (404)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTT
T ss_pred             EEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCC
Confidence            9999999998875 467778887655433 23334567788889998876211 1000                      


Q ss_pred             ---------------------------------------------------ccc---CCceEEEecCCCEEEEeEeCCCC
Q psy3045         137 ---------------------------------------------------AGV---EPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus       137 ---------------------------------------------------~~~---~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                                                                         +..   ......+.+|+.+.|.|.+.+.|
T Consensus       171 ~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p  250 (404)
T 3p3y_A          171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP  250 (404)
T ss_dssp             SCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSS
T ss_pred             CcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCC
Confidence                                                               000   00234577899999999999999


Q ss_pred             CceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecC
Q psy3045         163 VKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG  236 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g  236 (267)
                      .+.+.|++++..+....      ...|.|.++..+|+|.|+|.|.|..+.......+.|.   .+|.+...+....+.+|
T Consensus       251 ~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~~~~~~v~~g  327 (404)
T 3p3y_A          251 TPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK---AAPYWLDEPKNLILAPG  327 (404)
T ss_dssp             CCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE---EEEEEEECCCCEEECTT
T ss_pred             CCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEe---CCCeeeccCCcceeecC
Confidence            99999999999886543      5789999999999999999999999887777777776   46777777878889999


Q ss_pred             CcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         237 PNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       237 ~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      +.+.|.|.+.|.|.|.+.|+++|..+..+
T Consensus       328 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (404)
T 3p3y_A          328 EDGRLVCRANGNPKPTVQWMVNGEPLQSA  356 (404)
T ss_dssp             CCEEEECEEEEESCCEEEEEETTEEGGGS
T ss_pred             CcEEEEEEccccCCCceEEEECCEecCCC
Confidence            99999999999999999999999998654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=5.1e-31  Score=213.27  Aligned_cols=247  Identities=20%  Similarity=0.312  Sum_probs=175.4

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..||.|...+  .++.+.+|+++.|.|.+.+      +.|++++....  .... .......+++|.|.+++.+|+|.|+
T Consensus         4 ~~~P~~~~~p--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~--~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (395)
T 1bih_A            4 DKYPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN--WQEH-NAALRKDEGSLVFLRPQASDEGHYQ   78 (395)
T ss_dssp             -CCCEECCCC--SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCC--TTTT-TEEECTTSCCEEESSCCGGGCEEEE
T ss_pred             CCCCEeecCC--CceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcc--cccc-eEEEecCCceEEEecCCCCCCcEEE
Confidence            4689999888  7899999999999999876      99999643221  1100 1112224568999999999999999


Q ss_pred             EEEEcCCCccE-EEEEEEEEeccccccCCceEEEeCCCceE---------------------------------------
Q psy3045          85 CVVNNSVGGES-VETVLTVTAPLAAGVEPTVQTIDFGRPAQ---------------------------------------  124 (267)
Q Consensus        85 C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  124 (267)
                      |.+.|..|... ..+.|.|...+.+...+.......|+.+.                                       
T Consensus        79 C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  158 (395)
T 1bih_A           79 CFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG  158 (395)
T ss_dssp             EEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC
T ss_pred             EEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc
Confidence            99999877532 33444443322222222222222333444                                       


Q ss_pred             --------------------EEEEeecCCCcc---------c---------------ccCCceEEEecCCCEEEEeEeCC
Q psy3045         125 --------------------FTCKYEISPPLA---------A---------------GVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus       125 --------------------~~c~~~~~~~~~---------~---------------~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                                          +.|.+.......         .               ...+....+.+|+.+.|.|.+.+
T Consensus       159 ~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g  238 (395)
T 1bih_A          159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS  238 (395)
T ss_dssp             TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEEC
T ss_pred             CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEecc
Confidence                                444433221100         0               00123456788999999999999


Q ss_pred             CCCceEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEecccCCCeeecCC
Q psy3045         161 NPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESF  228 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~  228 (267)
                      .|.+.+.|++++..+...           ....|.|.++..+|+|.|+|.|.|..+.... ...|.|.   .+|.+...+
T Consensus       239 ~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~---~~P~~~~~~  315 (395)
T 1bih_A          239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV---SAPKYEQKP  315 (395)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE---EEEEEEECC
T ss_pred             CCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEE---cCCccccCC
Confidence            999999999999877532           1237999999999999999999999888655 7777776   577777776


Q ss_pred             ce-eEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         229 SD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       229 ~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .. ..+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+
T Consensus       316 ~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  353 (395)
T 1bih_A          316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG  353 (395)
T ss_dssp             CSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS
T ss_pred             CcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC
Confidence            66 67899999999999999999999999999988653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=2.3e-30  Score=210.01  Aligned_cols=224  Identities=23%  Similarity=0.377  Sum_probs=171.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....  . .....+. ...++.|.|.+++.+|+|.|+|
T Consensus       120 ~p~~~~~~~--~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  194 (403)
T 3laf_A          120 GPLRFLSQT--ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN--P-IPGDSRVVVLPSGALQISRLQPGDSGVYRC  194 (403)
T ss_dssp             CCCEECSCC--CCEEEETTSCEEECCCEECSSCCEEEEEESSSBCC--C-CTTCCSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             CCCccccCC--CcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecc--c-cCCceEEEEcCCceEEEcccccccCEEEEE
Confidence            467776666  6889999999999999977     99999643221  1 1112222 2235689999999999999999


Q ss_pred             EEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          86 VVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        86 ~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      .+.+..+. ......+.|...+.....+..                       ...+....+.+|+.+.|.|.+.+.|.+
T Consensus       195 ~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~-----------------------~~~~~~~~~~~g~~~~l~C~~~~~p~~  251 (403)
T 3laf_A          195 SARNPASTRTGNEAEVRILSDPGLHRQLYF-----------------------LQRPSNVIAIEGKDAVLECCVSGYPPP  251 (403)
T ss_dssp             EEECSSCCCBCCCEEEEEECCCCCCEEEEE-----------------------EECCCCEEEETTSCEEECCEEEEESCC
T ss_pred             EEEcCCCceeccceeEEEecCCCcccCceE-----------------------ecCCCceEecCCCcEEEEEEcCCCCCC
Confidence            99998775 345566666654432111111                       112233467889999999999999999


Q ss_pred             eEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC
Q psy3045         165 TISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP  237 (267)
Q Consensus       165 ~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~  237 (267)
                      .+.|++++..+...       ....|.|.++..+|+|.|+|.|.|..+....+..+.|.   .+|.+...+....+.+|+
T Consensus       252 ~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~  328 (403)
T 3laf_A          252 SFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL---VPPWFLNHPSNLYAYESM  328 (403)
T ss_dssp             EEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE---EEEEEEECCCCEECCTTC
T ss_pred             eEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE---CCCcEeecCcceEEecCC
Confidence            99999999877543       24679999999999999999999998887777777776   467777777778889999


Q ss_pred             cEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         238 NYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       238 ~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      .+.|.|.+.|.|.|.+.|+++|+.+..++
T Consensus       329 ~v~l~C~~~g~p~p~v~W~~~g~~~~~~~  357 (403)
T 3laf_A          329 DIEFECAVSGKPVPTVNWMKNGDVVIPSD  357 (403)
T ss_dssp             CEEECCEEEEESCCEEEEEETTEECCCSS
T ss_pred             eEEEEEEEeeccCCEEEEEECCEECCCCC
Confidence            99999999999999999999999886553

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=6.6e-30  Score=206.33  Aligned_cols=246  Identities=20%  Similarity=0.303  Sum_probs=178.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeee-cccCcceeccccCCceEEEEeeEEEEeecccCC------
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED------   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------   79 (267)
                      .+|.|...|. ..+.+.+|+.+.|.|.+.+     +.|++ ++.....    ....+....+++|.|.+++..|      
T Consensus         2 ~~P~f~~~p~-~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~----~~~~~~~~~~~~L~i~~~~~~d~~~~~d   76 (388)
T 2v5m_A            2 KGPVFLKEPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD----VPGLRQISSDGKLVFPPFRAEDYRQEVH   76 (388)
T ss_dssp             EEEEEEECCC-SEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCC----BTTTBEECSTTEEEECCCCGGGCCHHHH
T ss_pred             CCCchhhCCC-ceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCcccc----CCCceEEcCCceEEecccChhhcccccc
Confidence            3688888873 4577899999999999987     99999 4221110    0112233345689999999987      


Q ss_pred             CeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCc-----------------------
Q psy3045          80 SGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPL-----------------------  135 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-----------------------  135 (267)
                      +|.|+|.+.|..|.. +..+.+.+...+.....+.......|..+.|.|.+...++.                       
T Consensus        77 ~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~  156 (388)
T 2v5m_A           77 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG  156 (388)
T ss_dssp             EEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTT
T ss_pred             CceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCC
Confidence            999999999988763 45566666655544444444455556666666654321100                       


Q ss_pred             -------------------------------------------c--------------cccCCceEEEecCCCEEEEeEe
Q psy3045         136 -------------------------------------------A--------------AGVEPTVQTIDFGRPAQFTCKY  158 (267)
Q Consensus       136 -------------------------------------------~--------------~~~~~~~~~~~~g~~v~l~C~~  158 (267)
                                                                 .              .........+.+|+.+.|.|.+
T Consensus       157 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~  236 (388)
T 2v5m_A          157 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA  236 (388)
T ss_dssp             TEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC
T ss_pred             cEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC
Confidence                                                       0              0001122356779999999999


Q ss_pred             CCCCCceEEEEECCccCCC------C-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecC
Q psy3045         159 EGNPVKTISWMKDGKPVPD------H-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES  227 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~------~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~  227 (267)
                      .+.|.+.+.|++++..+..      .     ....|.|.++..+|+|.|+|.|.|..+.......|.|.   .+|.+...
T Consensus       237 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~  313 (388)
T 2v5m_A          237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---APLSAKID  313 (388)
T ss_dssp             EEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE---EEEEEEEE
T ss_pred             CCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEe---CCCccccC
Confidence            9999999999998644321      1     24689999999999999999999999887777777776   46666666


Q ss_pred             CceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         228 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       228 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      +....+.+|+.+.|.|.+.|.|.|.|.|+++|+.+..+
T Consensus       314 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~  351 (388)
T 2v5m_A          314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS  351 (388)
T ss_dssp             SSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC
T ss_pred             CCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC
Confidence            77778999999999999999999999999999998654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.3e-29  Score=195.41  Aligned_cols=207  Identities=17%  Similarity=0.239  Sum_probs=160.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+ +.|++++...         ......+..|.|.+++.+|+|.|+|.+.|
T Consensus        10 ~~~P~i~~~~--~~~~v~~G~~v~l~C~~~~~i~W~~~~~~~---------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   78 (290)
T 2o26_X           10 PSPPSIHPAQ--SELIVEAGDTLSLTCIDPDFVRWTFKTYFN---------EMVENKKNEWIQEKAEATRTGTYTCSNSN   78 (290)
T ss_dssp             --CCEESSCS--SEEEEETTSCEEEEEECTTEEEEEEECSSS---------CEEEECSSEEEETTCCGGGCEEEEEEESS
T ss_pred             CCCCEEeCCC--CeEEEcCCCcEEEEECCCCcEEEecCCcce---------eeecCCCceEEEeccCHHhCeEEEEEeeC
Confidence            5679998766  7899999999999999998 9999974322         11112237899999999999999999998


Q ss_pred             CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC-ceEEE
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISW  168 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W  168 (267)
                        |. ...+.|.|..++.....+                             ....+.+|+.+.|.|.+.+ |. +.+.|
T Consensus        79 --g~-~~~~~l~V~~~~~~~~~~-----------------------------~~~~~~~g~~v~l~C~~~~-p~~~~v~W  125 (290)
T 2o26_X           79 --GL-TSSIYVFVRDPAKLFLVG-----------------------------LPLFGKEDSDALVRCPLTD-PQVSQYSL  125 (290)
T ss_dssp             --SC-EEEEEEEEECSSCCBCCC-----------------------------CCEEEETTSCEEECCCBSC-CSCEEEEE
T ss_pred             --Cc-cEEEEEEEeCCCcccccc-----------------------------cceEEecCCeEEEeCcCCC-CCCceEEE
Confidence              43 677778887654433222                             2236778999999999985 77 89999


Q ss_pred             E-ECCccCCCC------CCCeEEeccCCCCCCe-EEEEEEEcCCCCceE-EEEEEEec-ccCCCeeecCCceeEEecCCc
Q psy3045         169 M-KDGKPVPDH------NEPVFRIDSVRKEDKG-MYQCVIRNEQESAQA-SGELKLGG-RFDPPVIKESFSDETLNPGPN  238 (267)
Q Consensus       169 ~-~~~~~~~~~------~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~-~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~  238 (267)
                      + +++..+...      ....|.|.++..+|+| .|+|.|.|..+.... .+.+.|.. ...+|.+...+....+.+|+.
T Consensus       126 ~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~  205 (290)
T 2o26_X          126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDT  205 (290)
T ss_dssp             EETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCC
T ss_pred             EeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCc
Confidence            5 678777543      3468999999999999 999999998544222 35565542 236788887777778899999


Q ss_pred             EEEEEEeecCCCCc-EEEEECCEE
Q psy3045         239 YYFKCIASGNPTPE-ISWYLDGKK  261 (267)
Q Consensus       239 ~~l~C~~~~~p~~~-i~W~~~~~~  261 (267)
                      +.|.|.+.|.|.|. +.|+++|..
T Consensus       206 v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          206 FTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             EEEEEEEEESSTTCEEEEEEESSS
T ss_pred             EEEEEEEecCCcceeEEEecCCCC
Confidence            99999999999996 999999976

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=3.3e-29  Score=209.96  Aligned_cols=237  Identities=18%  Similarity=0.254  Sum_probs=179.2

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..||.|...+  ....+.+|++++|.|.+.+ +.|++++...        .  ......+|.|.+++.+|+|.|+|.+.+
T Consensus        34 ~~pP~i~~~~--~~~~v~~G~~v~l~C~~~~~v~W~~~~~~~--------~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n  101 (524)
T 2ec8_A           34 PSPPSIHPGK--SDLIVRVGDEIRLLCTDPGFVKWTFEILDE--------T--NENKQNEWITEKAEATNTGKYTCTNKH  101 (524)
T ss_dssp             CCCCEEESCC--SEEECCTTSCEEEEEECTTEEEEEEESSSC--------C--EEECSSEEEESSCCSTTCEEEEEEETT
T ss_pred             CCCCccCCCC--ceEEEeCCCeEEEEEeCCceEEEcCCCccc--------c--ccCccceEEEcccchhhCEEEEEeecC
Confidence            4678887766  7899999999999999999 9999974321        1  333457899999999999999999988


Q ss_pred             CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCC------------------------------------
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP------------------------------------  133 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~------------------------------------  133 (267)
                        | .+..+.|.|..++.....+.......|+.+.|.|.+...+                                    
T Consensus       102 --g-~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~  178 (524)
T 2ec8_A          102 --G-LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRA  178 (524)
T ss_dssp             --S-CEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGG
T ss_pred             --C-cceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchh
Confidence              4 3667777777554443333334444555555555543221                                    


Q ss_pred             --------------------------------CcccccCCceEEEecCCCEEEEeEeCCCCCce-EEEEECCccC--CC-
Q psy3045         134 --------------------------------PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPV--PD-  177 (267)
Q Consensus       134 --------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~--~~-  177 (267)
                                                      ++.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+  .. 
T Consensus       179 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~  258 (524)
T 2ec8_A          179 YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK  258 (524)
T ss_dssp             GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE
T ss_pred             hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc
Confidence                                            11122233445688899999999999888775 9999999883  21 


Q ss_pred             -----------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCC---ceeEEecCCcEEEEE
Q psy3045         178 -----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKC  243 (267)
Q Consensus       178 -----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~---~~~~~~~g~~~~l~C  243 (267)
                                 .....|.|.++..+|+|.|+|.|.|..+.......|.|.   .+|.+...+   ....+.+|+.+.|.|
T Consensus       259 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~~~~~~~~~~~~v~~G~~v~l~C  335 (524)
T 2ec8_A          259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV---DKGFINIFPMINTTVFVNDGENVDLIV  335 (524)
T ss_dssp             EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE---SSCEEEEEESSCSEEEECTTCCEEEEE
T ss_pred             cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe---ccCceEeecCCCceEEEcCCCcEEEEE
Confidence                       124679999999999999999999999888777777776   466665543   367889999999999


Q ss_pred             EeecCCCCc-EEEEECCEEcCCC
Q psy3045         244 IASGNPTPE-ISWYLDGKKLVNA  265 (267)
Q Consensus       244 ~~~~~p~~~-i~W~~~~~~l~~~  265 (267)
                      .+.|.|.|. +.|+++|+.+..+
T Consensus       336 ~~~g~P~p~~v~W~k~g~~~~~~  358 (524)
T 2ec8_A          336 EYEAFPKPEHQQWIYMNRTFTDK  358 (524)
T ss_dssp             EEEEESCCCEEEEESSSCBCSSS
T ss_pred             EEeecCCCcEEEEEECCeeccCC
Confidence            999999998 9999999988654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=205.82  Aligned_cols=223  Identities=22%  Similarity=0.298  Sum_probs=171.3

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEec-------c-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-------E-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV   77 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~-------~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   77 (267)
                      ...+|.|...+  .++.+.+|+++.|.|.+.       +     +.|++++...  ........++...+++|.|.+++.
T Consensus        15 ~~~~p~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~   90 (339)
T 3o4o_C           15 ARSCRFRGRHY--KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSAR--TVPGEEETRMWAQDGALWLLPALQ   90 (339)
T ss_dssp             ---CEEEEECS--CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCS--CCSCCSSSCEEEETTEEEESSBCT
T ss_pred             chhhHhhCcCc--eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCc--ccCccccccEEeeCCeEEECCCCc
Confidence            34568888887  799999999999999997       5     9999964321  112222456666778999999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      +|+|.|+|.+.+..+.....+.|.|...+........                           ....+..|+.+.|.|.
T Consensus        91 ~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~---------------------------~~~~~~~g~~v~l~C~  143 (339)
T 3o4o_C           91 EDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFIS---------------------------YPQILTLSTSGVLVCP  143 (339)
T ss_dssp             TCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHC---------------------------EEEEEETTSCEEEECC
T ss_pred             ccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccc---------------------------cceEEECCCCEEEEec
Confidence            9999999999998887788888888765432211111                           1126778999999999


Q ss_pred             -----eCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCC----ceEEEEEEEeccc-
Q psy3045         158 -----YEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQES----AQASGELKLGGRF-  219 (267)
Q Consensus       158 -----~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~-  219 (267)
                           +.+.|.+.+.|++++..+...        ....|.|.++..+|+|.|+|.|.|..+.    ......+.|.... 
T Consensus       144 ~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~  223 (339)
T 3o4o_C          144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE  223 (339)
T ss_dssp             SCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC
T ss_pred             CCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC
Confidence                 778889999999999888654        2358999999999999999999998763    3445666665321 


Q ss_pred             -CCCeeecCCceeEEecCCcEEEEEEe---ecCC-CCcEEEEECCEEcC
Q psy3045         220 -DPPVIKESFSDETLNPGPNYYFKCIA---SGNP-TPEISWYLDGKKLV  263 (267)
Q Consensus       220 -~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~~~i~W~~~~~~l~  263 (267)
                       .+|.+...+....+.+|+.+.|.|.+   .|.| .+.+.|+++|..+.
T Consensus       224 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~  272 (339)
T 3o4o_C          224 ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE  272 (339)
T ss_dssp             CCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSS
T ss_pred             CCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecc
Confidence             35677776666778899999999999   8999 78999999998764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=6.6e-30  Score=203.57  Aligned_cols=217  Identities=18%  Similarity=0.281  Sum_probs=149.5

Q ss_pred             eeEEecCCCeEEEEEEec---------------c-eeeeecccCcceecccc---CCceEEEEeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQ---------------E-NMWFKFIEGSSRKVAVP---LNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~---------------~-~~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .++.+.+|+++.|.|.+.               . +.|++++..........   ...++...+..|.|.+++.+|+|.|
T Consensus        15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   94 (349)
T 4dep_C           15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNY   94 (349)
T ss_dssp             CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEE
T ss_pred             eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEE
Confidence            678899999999999987               2 99999753222222222   3456666778999999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-----
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-----  158 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-----  158 (267)
                      +|.+.|..+.....+.|.|...+.......                         ..+....+..|+.+.|.|.+     
T Consensus        95 ~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~-------------------------~~~~~~~~~~g~~~~l~C~~~~~~~  149 (349)
T 4dep_C           95 TCMLRNTTYCSKVAFPLEVVQKDSCFNSPM-------------------------KLPVHKLYIEYGIQRITCPNVDGYF  149 (349)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTSCCSC-------------------------CCCEEEEETTCSEEEEECCSCTTSS
T ss_pred             EEEEecCCceEEEEEEEEEecCCcccCccc-------------------------ccCcceeeecCccEEEEcCCCcccc
Confidence            999999888777788888876443221111                         01223367789999999975     


Q ss_pred             CCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCC-CCc---eEEEEEEEecccC---CCeeec
Q psy3045         159 EGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESA---QASGELKLGGRFD---PPVIKE  226 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~---~~~~~l~v~~~~~---~p~~~~  226 (267)
                      .+.|.+.+.|++++..+...     .+..|.|.++..+|+|.|+|.|.|.. +..   ...+.+.+.....   +|.+..
T Consensus       150 ~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~  229 (349)
T 4dep_C          150 PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS  229 (349)
T ss_dssp             CTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-
T ss_pred             cCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEec
Confidence            67789999999999988642     24679999999999999999999986 433   3445555543211   566665


Q ss_pred             CCcee--EEecCCcEEEEEEee----cCCCCcEEEEECCEEcCC
Q psy3045         227 SFSDE--TLNPGPNYYFKCIAS----GNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       227 ~~~~~--~~~~g~~~~l~C~~~----~~p~~~i~W~~~~~~l~~  264 (267)
                      .....  .+.+|+.+.|.|.+.    |.|.|.+.|+++|+.+..
T Consensus       230 ~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             ---------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             CCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            55433  678899999999998    578899999999988765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=206.55  Aligned_cols=229  Identities=19%  Similarity=0.272  Sum_probs=159.9

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+|.|...   .+..+.+|+++.|.|.+.+      +.|++++....  ..  ...++......|.|.+++.+|+|.|+
T Consensus         5 ~~~P~~~~~---~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~--~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~   77 (317)
T 2y25_A            5 FTGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS--VD--EKHDFKDGICTLLITEFSKKDAGIYE   77 (317)
T ss_dssp             SSCCEEEEE---EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC--CS--CC-----CCEEEEETTCCSTTCSCEE
T ss_pred             cCCCcEeee---eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcC--CC--CcEEEECCeEEEEEccCCcccCeEEE
Confidence            467888743   4689999999999999876      99999632211  11  11122233468999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC-CCC
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPV  163 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~  163 (267)
                      |.+.+..+.....+.|.|...+.....+.......|..+.+.|.                    .+...|.|.+.+ .|.
T Consensus        78 C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~--------------------~~~~~l~c~~~~~~p~  137 (317)
T 2y25_A           78 VILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST--------------------AEGIQLYSFVTYYVED  137 (317)
T ss_dssp             EEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEEC--------------------SSEEEEEEEBSSCCSS
T ss_pred             EEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEee--------------------ccccEEEEEeccCCCC
Confidence            99999888766655555443322221212222234555555553                    233566777665 578


Q ss_pred             ceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec-----------------
Q psy3045         164 KTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG-----------------  217 (267)
Q Consensus       164 ~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~-----------------  217 (267)
                      +.+.|++++..+....         ...|.|.++..+|+|.|+|.|.|..+....+..+.+..                 
T Consensus       138 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~  217 (317)
T 2y25_A          138 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA  217 (317)
T ss_dssp             CEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccC
Confidence            8999999999886432         23499999999999999999999888777666665431                 


Q ss_pred             ccCCCe-eecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         218 RFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       218 ~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      ...+|. +...+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..++
T Consensus       218 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  267 (317)
T 2y25_A          218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD  267 (317)
T ss_dssp             TTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS
T ss_pred             cCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC
Confidence            011233 3334556788999999999999999999999999999887654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=3.8e-29  Score=193.97  Aligned_cols=216  Identities=22%  Similarity=0.222  Sum_probs=159.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      .+|.|...+  ..+.+.+|++++|.|.+.+ +.|++++....       ..........|.|.+++..|+|.|+|.+.+.
T Consensus         3 p~p~i~~~~--~~~~v~~G~~v~L~C~~~~~v~W~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   73 (289)
T 3ejj_X            3 PAPVIEPSG--PELVVEPGETVTLRCVSNGSVEWDGPISPYW-------TLDPESPGSTLTTRNATFKNTGTYRCTELED   73 (289)
T ss_dssp             -CCEEESCS--SEEEECTTCCEEEEEECSSCCEEECSCSSSS-------EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred             CCcEecCCC--ceEEECCCCCEEEEEEeCCcEEEccCCCceE-------EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence            467777776  7899999999999999999 99998532211       0111123468999999999999999999988


Q ss_pred             CCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc-eEEEE
Q psy3045          91 VGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK-TISWM  169 (267)
Q Consensus        91 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~  169 (267)
                      .+..+..+.|.|..++....                            ..+....+.+|+.+.|.|.+.+.+.+ .+.|+
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~----------------------------~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~  125 (289)
T 3ejj_X           74 PMAGSTTIHLYVKDPAHSWN----------------------------LLAQEVTVVEGQEAVLPCLITDPALKDSVSLM  125 (289)
T ss_dssp             ----CEEEEEEECCSSCSEE----------------------------ESCSEEEEETTSCEEECEEESCGGGGGSEEEE
T ss_pred             CCcceeEEEEEEeCCCccee----------------------------cccceEEEecCCceEeEEEccCCCcceEEEEE
Confidence            88778888888876543210                            11233478889999999999987655 49998


Q ss_pred             E-CCccCCCC------CCCeEEeccCCCCCCeEEEEEEE-cCCCCceEEEEEEEecc-cCCCeeecCCceeEEecCCcEE
Q psy3045         170 K-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIR-NEQESAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYY  240 (267)
Q Consensus       170 ~-~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~  240 (267)
                      + ++..+...      ....|.|.++..+|+|.|+|.+. +..+.....+.+.|... ..+|.+...+....+.+|+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~  205 (289)
T 3ejj_X          126 REGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ  205 (289)
T ss_dssp             EGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEE
T ss_pred             ecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEE
Confidence            7 55555332      34679999999999999999999 44444444566666532 1467888777777778999999


Q ss_pred             EEEEeec-CCCCcEEEEECCEEcCC
Q psy3045         241 FKCIASG-NPTPEISWYLDGKKLVN  264 (267)
Q Consensus       241 l~C~~~~-~p~~~i~W~~~~~~l~~  264 (267)
                      |.|.+.+ .|.+.+.|+++|..+..
T Consensus       206 l~C~~~~~~p~~~i~W~~~~~~~~~  230 (289)
T 3ejj_X          206 IVCSATNAEVGFNVILKRGDTKLEI  230 (289)
T ss_dssp             EEEEEEESSSCCEEEEEETTEECCC
T ss_pred             EEEEeCCCCCceEEEEEECCEEeec
Confidence            9999998 78899999999998864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=1.6e-29  Score=211.85  Aligned_cols=215  Identities=23%  Similarity=0.381  Sum_probs=162.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCc--ceeccccC-CceEEEEeeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGS--SRKVAVPL-NDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~--~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+      +.|++++...  ........ ........+.|.|.+++.+|+|
T Consensus       209 ~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  286 (524)
T 2ec8_A          209 KAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG  286 (524)
T ss_dssp             CSCCEEECSC--SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCE
T ss_pred             CCCCcEEecC--CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCE
Confidence            3678888877  6779999999999999987      8999975431  11111111 1112345678999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      .|+|.+.|..|.....+.|.|..++.....+.                          ......+.+|+.+.|.|.+.+.
T Consensus       287 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~--------------------------~~~~~~v~~G~~v~l~C~~~g~  340 (524)
T 2ec8_A          287 VFMCYANNTFGSANVTTTLEVVDKGFINIFPM--------------------------INTTVFVNDGENVDLIVEYEAF  340 (524)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEESSCEEEEEES--------------------------SCSEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEEecCCceEEEEEEEEeccCceEeecC--------------------------CCceEEEcCCCcEEEEEEEeec
Confidence            99999999999888888888886544322211                          0123478899999999999999


Q ss_pred             CCce-EEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeec
Q psy3045         162 PVKT-ISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE  226 (267)
Q Consensus       162 p~~~-~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~  226 (267)
                      |.+. +.|++++..+....              ...|.|.++..+|+|.|+|.|.|..+....++.|.|.   .+|.+..
T Consensus       341 P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---~~P~i~~  417 (524)
T 2ec8_A          341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPEILT  417 (524)
T ss_dssp             SCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC---EEEEEEE
T ss_pred             CCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe---cCCeEee
Confidence            9888 99999998876432              2479999999999999999999999988878888775   4666655


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      .+.   ..+|   .|.|.+.|.|.|.|.|+++|..+
T Consensus       418 ~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          418 YDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             EEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred             ccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence            432   3345   89999999999999999998665

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=1.6e-29  Score=198.60  Aligned_cols=216  Identities=21%  Similarity=0.291  Sum_probs=160.1

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ..+.+.+|+++.|.|.+.+      +.|++++...  ........++...+++|.|.+++.+|+|.|+|.+.|..+....
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT--PVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   90 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCS--CSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcC--ccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEE
Confidence            4678999999999999877      9999964322  1222334555556678999999999999999999998877665


Q ss_pred             EEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe------CCCCCceEEEE
Q psy3045          97 ETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY------EGNPVKTISWM  169 (267)
Q Consensus        97 ~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~------~~~p~~~~~W~  169 (267)
                      .+.+.+... +.....+..                          .....+..|+.+.|.|.+      .+.|.+.+.|+
T Consensus        91 ~~~v~v~~~~p~~~~~~~~--------------------------~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~  144 (315)
T 1itb_B           91 KISAKFVENEPNLCYNAQA--------------------------IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY  144 (315)
T ss_dssp             ECCCEEECCCTTSSSCGGG--------------------------EEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEE
T ss_pred             EEEEEEeCCCCCccccccc--------------------------ccceEEecCCCeEEEEecccccccCCCCCCEEEEE
Confidence            555554432 221111111                          012367789999999998      78899999999


Q ss_pred             ECCccCCCC------CCCeEEeccCCCCCCeEEEEEEE-cCCCCce---EEEEEEEecc--cCCCeeecCCce-eEEecC
Q psy3045         170 KDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIR-NEQESAQ---ASGELKLGGR--FDPPVIKESFSD-ETLNPG  236 (267)
Q Consensus       170 ~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~---~~~~l~v~~~--~~~p~~~~~~~~-~~~~~g  236 (267)
                      +++..+...      ....|.|.++..+|+|.|+|.|. +..+...   ....+.+...  ..+|.+...+.. ..+.+|
T Consensus       145 k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g  224 (315)
T 1itb_B          145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG  224 (315)
T ss_dssp             ETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSS
T ss_pred             ECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCC
Confidence            999888542      34689999999999999999999 6776652   2333323211  256777666554 478899


Q ss_pred             CcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         237 PNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       237 ~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+.|.|.+.|.|.|.+.|+++|..+..++
T Consensus       225 ~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~  254 (315)
T 1itb_B          225 SQIQLICNVTGQLSDIAYWKWNGSVIDEDD  254 (315)
T ss_dssp             SCEEEEEEEEECTTSEEEEEETTEECCTTC
T ss_pred             CcEEEEEEEecCCCCeeEEEECCEECCccc
Confidence            999999999999999999999999987643

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=202.99  Aligned_cols=233  Identities=14%  Similarity=0.207  Sum_probs=155.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      .++.|.+|++++|.|.+.+     +.|++++........+....+   ...+|.|.+++.+|+|.|+|.+.+..+.....
T Consensus        56 ~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r---~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~  132 (527)
T 3qs9_E           56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVSMVILKMTETQAGEYLLFIQSEATNYTIL  132 (527)
T ss_dssp             CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE
T ss_pred             eeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcc---eEEEEEECcCChhhCeeEEEEEEeccccEEEE
Confidence            4789999999999999977     889986332111111111111   12369999999999999999999988766555


Q ss_pred             EEEEEEeccccccCC-ceEEEeCCCceEEEEEeecCCCcc----------------------------------------
Q psy3045          98 TVLTVTAPLAAGVEP-TVQTIDFGRPAQFTCKYEISPPLA----------------------------------------  136 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~-~~~~~~~~~~~~~~c~~~~~~~~~----------------------------------------  136 (267)
                      +.+.|..  .....+ .......+....|.|.+.+.|++.                                        
T Consensus       133 ~~v~v~~--~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A  210 (527)
T 3qs9_E          133 FTVSIRN--TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA  210 (527)
T ss_dssp             EEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEE
T ss_pred             EEEEECC--ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEE
Confidence            5555431  111000 011112233333444333221110                                        


Q ss_pred             -------------------cccCCceEEEecCCCEEEEeEeC-CCCCceEEEEECCccCCCCC---------------CC
Q psy3045         137 -------------------AGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHN---------------EP  181 (267)
Q Consensus       137 -------------------~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~~---------------~~  181 (267)
                                         ....+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....               ..
T Consensus       211 ~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~  290 (527)
T 3qs9_E          211 RNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL  290 (527)
T ss_dssp             ECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEE
T ss_pred             EeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEE
Confidence                               00144566788999999999996 88999999999998775421               23


Q ss_pred             eEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCC--ceeEEecCCcEEEEEEeecCCCCcEEEEECC
Q psy3045         182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDG  259 (267)
Q Consensus       182 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~  259 (267)
                      .|.|.++..+|+|.|+|.|.|.   ...+..|.|.   .+|.+...+  ....+.+|+.+.|.|.+.|.|.|.|.|+|+|
T Consensus       291 ~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~---~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g  364 (527)
T 3qs9_E          291 FAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV---EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR  364 (527)
T ss_dssp             EEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-----CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETT
T ss_pred             EEEEccCCcccCeEEEEEEEeC---CCceEEEEEE---ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECC
Confidence            5999999999999999999997   4556666665   455554433  3456788999999999999999999999999


Q ss_pred             EEcCCCC
Q psy3045         260 KKLVNAE  266 (267)
Q Consensus       260 ~~l~~~~  266 (267)
                      +.|..+.
T Consensus       365 ~~l~~~~  371 (527)
T 3qs9_E          365 KSFPCEQ  371 (527)
T ss_dssp             EEEECBC
T ss_pred             EECcCCc
Confidence            9986543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=9.7e-29  Score=188.98  Aligned_cols=204  Identities=19%  Similarity=0.269  Sum_probs=156.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|.|...|  ....+.+|+++.|.|.+.+      +.|++++....            ..+..|.|.+++.+|+|.|+|.
T Consensus         1 kP~i~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~------------~~~~~l~i~~~~~~d~G~Y~C~   66 (262)
T 3rjd_A            1 KAVITLQP--PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ------------TSTPSYRITSASVNDSGEYRCQ   66 (262)
T ss_dssp             CCEEEESS--CCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECS------------CCSSEEEESSCCGGGCEEEEEE
T ss_pred             CCeEecCC--CcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEee------------ccCCeEEEecCCcccCeEEEEE
Confidence            37777777  6788999999999999977      99999532111            1245799999999999999999


Q ss_pred             EEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-CCCCCce
Q psy3045          87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-EGNPVKT  165 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~  165 (267)
                      +.+..+..  .+.|.|...+... .                             +....+.+|+.+.|.|.+ .+.|.+.
T Consensus        67 ~~~~~~s~--~~~l~v~~~~~~~-~-----------------------------~~~~~~~~g~~v~l~C~~~~~~p~~~  114 (262)
T 3rjd_A           67 RGLSGRSD--PIQLEIHRGWLLL-Q-----------------------------VSSRVFTEGEPLALRCHAWKDKLVYN  114 (262)
T ss_dssp             ESSSCCCC--CEEEEEECSSEEE-E-----------------------------ESCSEEETTSCEEEEEEEGGGCCCEE
T ss_pred             EecCCccc--cEEEEEeccceEe-c-----------------------------CCCeEEecCCeEEEEEEccCCCCCce
Confidence            98765543  4455555422100 0                             112267789999999999 6778889


Q ss_pred             EEEEECCccCCCC-CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEE
Q psy3045         166 ISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI  244 (267)
Q Consensus       166 ~~W~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~  244 (267)
                      +.|++++..+... ....|.|..+..+|.|.|+|.+.|..+.......+.+.....+|.+...+ ...+.+|+.+.|.|.
T Consensus       115 v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~  193 (262)
T 3rjd_A          115 VLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCE  193 (262)
T ss_dssp             EEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEE
T ss_pred             EEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeE
Confidence            9999999887543 36789999999999999999999988766666777777655577777666 456889999999999


Q ss_pred             eecCCC-C----cEEEEECCEEcC
Q psy3045         245 ASGNPT-P----EISWYLDGKKLV  263 (267)
Q Consensus       245 ~~~~p~-~----~i~W~~~~~~l~  263 (267)
                      +.+.|. |    .+.|+++|..+.
T Consensus       194 ~~~~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          194 TKLLLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             CCCCCC-----EEEEEEETTEEEE
T ss_pred             cccCCCCCCccEEEEEEeCCcEec
Confidence            999886 4    388999998875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=6.8e-30  Score=202.27  Aligned_cols=229  Identities=22%  Similarity=0.391  Sum_probs=101.6

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      .+..+.+|+++.|.|.+.+      +.|++++..      +....++...++.|.|.+++.+|+|.|+|.+.+. +....
T Consensus        16 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~   88 (334)
T 1ry7_B           16 EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTG------LVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEecCCcEEEEeeCCCCCCCcceEEEECCee------CCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEE
Confidence            7889999999999999986      999996432      2223445556678999999999999999999998 66667


Q ss_pred             EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccc---cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCc
Q psy3045          97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG---VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK  173 (267)
Q Consensus        97 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~---~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~  173 (267)
                      .+.|.|...+..........  .....    .....+|....   .......+..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~--~~~~~----~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~  162 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGED--EAEDT----GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR  162 (334)
T ss_dssp             ------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTB
T ss_pred             EEEEEEeccCcccccccccc--ccccc----cccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCE
Confidence            77777765432211000000  00000    00011111111   12234578889999999999999999999999998


Q ss_pred             cCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEeccc-CCCeeec-CCceeEEecCCcEEE
Q psy3045         174 PVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF-DPPVIKE-SFSDETLNPGPNYYF  241 (267)
Q Consensus       174 ~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~-~~p~~~~-~~~~~~~~~g~~~~l  241 (267)
                      .+...          ....|.|.++..+|+|.|+|.+.|..+.......+.|.... .+|.+.. .+....+.+|+.+.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l  242 (334)
T 1ry7_B          163 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF  242 (334)
T ss_dssp             CCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEE
T ss_pred             ECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEE
Confidence            77532          24589999999999999999999998877777777776422 2344443 345678899999999


Q ss_pred             EEEeecCCCCcEEEEE----CCEEcCC
Q psy3045         242 KCIASGNPTPEISWYL----DGKKLVN  264 (267)
Q Consensus       242 ~C~~~~~p~~~i~W~~----~~~~l~~  264 (267)
                      .|.+.|.|.|.+.|++    ||..+..
T Consensus       243 ~C~~~g~p~p~v~W~~~~~~~g~~~~~  269 (334)
T 1ry7_B          243 HCKVYSDAQPHIQWLKHVEVNGSKVGP  269 (334)
T ss_dssp             CCCCBCSSCEEEEEEECCCGGGCSBCT
T ss_pred             EEEEecCCCCeEEEEECCcCCCccccC
Confidence            9999999999999999    6766643

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=3.8e-27  Score=201.97  Aligned_cols=233  Identities=21%  Similarity=0.373  Sum_probs=175.4

Q ss_pred             eEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCc-cEE
Q psy3045          24 RFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESV   96 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~   96 (267)
                      ...+..|+++.|.|.+.+    +.|++++...      ....++.  ..+..|.|.++..+|+|.|+|.+.|..|. .+.
T Consensus       298 ~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~  371 (642)
T 1e07_A          298 SNPVEDEDAVALTCEPEIQNTTYLWWVNNQSL------PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD  371 (642)
T ss_pred             ceeEecCCcEEEEEECCCCCccEEEEECCccC------CCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee
Confidence            456667889999999988    9999964322      2223332  24568999999999999999999999886 456


Q ss_pred             EEEEEEEeccc-cccCCceEEEeCCCceEEEEEeecCCCcc---------------------------------------
Q psy3045          97 ETVLTVTAPLA-AGVEPTVQTIDFGRPAQFTCKYEISPPLA---------------------------------------  136 (267)
Q Consensus        97 ~~~l~V~~~~~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~~---------------------------------------  136 (267)
                      .+.|.|...+. +...+.......|..+.|.|.+...|++.                                       
T Consensus       372 ~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  451 (642)
T 1e07_A          372 PVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASG  451 (642)
T ss_pred             eEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCC
Confidence            67788876543 23444455667888888888875432211                                       


Q ss_pred             ------------------cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCC
Q psy3045         137 ------------------AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKE  191 (267)
Q Consensus       137 ------------------~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~  191 (267)
                                        .........+.+|+.+.|.|.+. .|.+.+.|++++..+...       ....|.|.++..+
T Consensus       452 ~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~  530 (642)
T 1e07_A          452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRN  530 (642)
T ss_pred             CcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChh
Confidence                              00111233566899999999998 478899999999887643       2468999999999


Q ss_pred             CCeEEEEEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         192 DKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       192 d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      |+|.|+|.|.|..|.... .+.|.|..  .|+.+...+.+..+.+|+.+.|.|.+.|.|+|.+.|++||..|..+
T Consensus       531 d~G~Y~C~a~n~~g~~~s~~~~l~V~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~  603 (642)
T 1e07_A          531 DARAYVCGIQNSVSANRSDPVTLDVLY--GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT  603 (642)
T ss_pred             cCceEEEEeEcCCCCccCCCEEEEEEe--CCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC
Confidence            999999999999886543 46666653  4555666667778999999999999999999999999999988653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=191.40  Aligned_cols=215  Identities=19%  Similarity=0.201  Sum_probs=156.9

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+|.|...+  ..+.+.+|+++.|.|.+.+ +.|+++......   ..    .....+.|.|.+++..|+|.|+|.+.+
T Consensus         2 ~~~P~i~~~~--~~~~v~~G~~v~L~C~~~~~v~W~~~~~~~~~---~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n   72 (292)
T 4dkd_C            2 GSIPVIEPSV--PELVVKPGATVTLRCVGNGSVEWDGPPSPHWT---LY----SDGSSSILSTNNATFQNTGTYRCTEPG   72 (292)
T ss_dssp             --CCEEESCC--SSCEECTTCCEEEEEECSSCCCBCCCCCSSCE---EC----CBTTEEEEEESSCCGGGCSCEEECCCC
T ss_pred             CCCceecCCC--CeEEEcCCCcEEEEEcCCCceEEccCCCCceE---Ee----ccCceEEEEEcccccccCEEEEEEEcc
Confidence            4689998887  7889999999999999999 999974221100   00    011245899999999999999999999


Q ss_pred             CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC--ceEE
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV--KTIS  167 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~  167 (267)
                      ..+..+..+.|.|..++....                            ..+....+.+|+.+.|.|.+.+ |.  +.+.
T Consensus        73 ~~~~~~~~~~l~V~~~~~~~~----------------------------~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~  123 (292)
T 4dkd_C           73 DPLGGSAAIHLYVKDPARPWN----------------------------VLAQEVVVFEDQDALLPCLLTD-PVLEAGVS  123 (292)
T ss_dssp             ----CCEEECCEECCSSCCEE----------------------------ESCSEEEEETTSCEECCEEESS-GGGGSSEE
T ss_pred             CCCCcceEEEEEEcCcccccc----------------------------ccCCeEEEcCCCcEEEeeeCCC-CCcceeEE
Confidence            887777778888776443211                            1122337888999999999987 43  7899


Q ss_pred             EEEC-CccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEeccc-CCCeeecCCceeEEecCCc
Q psy3045         168 WMKD-GKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRF-DPPVIKESFSDETLNPGPN  238 (267)
Q Consensus       168 W~~~-~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~-~~p~~~~~~~~~~~~~g~~  238 (267)
                      |+++ +..+...      ....|.|.++..+|+|.|+|.+.+..+.... .+.+.|.... .+|.+...+....+.+|+.
T Consensus       124 W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~  203 (292)
T 4dkd_C          124 LVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEA  203 (292)
T ss_dssp             EEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSC
T ss_pred             EEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCC
Confidence            9997 4444332      2345999999999999999999987665433 5666665322 2788888777777789999


Q ss_pred             EEEEEEeecCCCC-cEEEEECCEEcC
Q psy3045         239 YYFKCIASGNPTP-EISWYLDGKKLV  263 (267)
Q Consensus       239 ~~l~C~~~~~p~~-~i~W~~~~~~l~  263 (267)
                      +.|.|.+.+.|++ .+.|+++|..+.
T Consensus       204 v~l~C~~~~~~~~~~~~w~~~~~~~~  229 (292)
T 4dkd_C          204 AQIVCSASSVDVNFDVFLQHNNTKLA  229 (292)
T ss_dssp             EEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred             EEEEEEecCCCCceEEEEeCCCcccc
Confidence            9999999987764 789999987664

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=4.8e-28  Score=202.12  Aligned_cols=199  Identities=17%  Similarity=0.182  Sum_probs=143.7

Q ss_pred             eeEEecCCCeEEEEEEec-c-----eeeeecccCcceeccc----cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAV----PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ....+.+|+++.|.|.+. +     +.|++++.........    ....+......+|.|.+++.+|+|.|+|.|.|.  
T Consensus       235 ~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~--  312 (527)
T 3qs9_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--  312 (527)
T ss_dssp             CEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE--
T ss_pred             CceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC--
Confidence            578899999999999996 5     9999974422111100    011222334567999999999999999999887  


Q ss_pred             ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECC
Q psy3045          93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG  172 (267)
Q Consensus        93 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~  172 (267)
                       ....+.|.|...+.+...+..                           ....+.+|+.+.|.|.+.+.|.|.+.|+++|
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~---------------------------~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g  364 (527)
T 3qs9_E          313 -PSQSALVTIVEKGFINATNSS---------------------------EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR  364 (527)
T ss_dssp             -EEEEEEEEEC--CEEECCCSC---------------------------CEECCCTTCCCCEEEEEEEESCCEEEEEETT
T ss_pred             -CCceEEEEEEccCccccccCc---------------------------ccEEEcCCCeEEEEEEEEecCCCEEEEEECC
Confidence             566677777654432222211                           1225778999999999999999999999999


Q ss_pred             ccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec
Q psy3045         173 KPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG  247 (267)
Q Consensus       173 ~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  247 (267)
                      ..+...     ....|.|.++..+|+|.|+|.|.|..+....++.|.|.   .+|.+...+.        ...|.|.+.|
T Consensus       365 ~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~---~~P~i~~~~~--------~~~l~C~a~g  433 (527)
T 3qs9_E          365 KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKPQVLAEAS--------ASQASCFSDG  433 (527)
T ss_dssp             EEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----CCCEEEECCC--------CE---EEEEC
T ss_pred             EECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe---cCCeEEEeCC--------CCEEEEEEEE
Confidence            887543     25689999999999999999999999888777777775   5777765442        2357999999


Q ss_pred             CCCCcEEEEECCEEc
Q psy3045         248 NPTPEISWYLDGKKL  262 (267)
Q Consensus       248 ~p~~~i~W~~~~~~l  262 (267)
                      .|.|.|.|++++...
T Consensus       434 ~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          434 YPLPSWTWKKCSDKS  448 (527)
T ss_dssp             SSCCEEEEECCC---
T ss_pred             EcCCeEEEEECCCCc
Confidence            999999999876543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=6.1e-28  Score=212.16  Aligned_cols=239  Identities=22%  Similarity=0.297  Sum_probs=181.5

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE---------EeeEEEEeeccc
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ---------VSGTLIIKEAKV   77 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~   77 (267)
                      .+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....      ...++..         ....|.|.++..
T Consensus       428 ~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  499 (816)
T 3dmk_A          428 DPPVIRQAF--QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA------NNDRYQVGQYVTVNGDVVSYLNITSVHA  499 (816)
T ss_dssp             CCCEEEEEC--CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECC------SCTTEEEEEEECTTSCEEEEEEESSCCT
T ss_pred             CCCceEecC--cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECC------CCCCcccccEEecCCCcEEEEEEeeccc
Confidence            467777665  5678999999999999987     99999633211      1112111         224699999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCc----------------------
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPL----------------------  135 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~----------------------  135 (267)
                      .|+|.|+|.+.|..|.......|.|...+.... ........|+.+.|.|.+...+..                      
T Consensus       500 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~  578 (816)
T 3dmk_A          500 NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPN  578 (816)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEEEECSSCEECC-CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTT
T ss_pred             cCCEEEEEEEEECCCeEEEEEEEEEecCCeeEc-cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecC
Confidence            999999999999999888888888887654332 233445677888888866532110                      


Q ss_pred             ------------------------------------------ccccCCceEEEecCCCEEEEeEeCCCC-CceEEEEECC
Q psy3045         136 ------------------------------------------AAGVEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDG  172 (267)
Q Consensus       136 ------------------------------------------~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~  172 (267)
                                                                ..........+..|+.+.|.|.+.+.+ ++.+.|+++|
T Consensus       579 ~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g  658 (816)
T 3dmk_A          579 GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDG  658 (816)
T ss_dssp             SEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETT
T ss_pred             CeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECC
Confidence                                                      011111233467799999999998765 4599999999


Q ss_pred             ccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEE
Q psy3045         173 KPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK  242 (267)
Q Consensus       173 ~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~  242 (267)
                      ..+...          ....|.|..+..+|+|.|+|.|.|..|....+..+.|.   .+|.+...+.+..+.+|+.+.|.
T Consensus       659 ~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---~~P~~~~~~~~~~v~~G~~v~l~  735 (816)
T 3dmk_A          659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---VPPRWILEPTDKAFAQGSDAKVE  735 (816)
T ss_dssp             BCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE---EEEEEEECCCCEEEETTCCEEEE
T ss_pred             eEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE---eCCceeeecccceecCCCcEEEE
Confidence            887532          24679999999999999999999999988888887776   57888888888889999999999


Q ss_pred             EEeecCCCCcEEEEECCEEc
Q psy3045         243 CIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       243 C~~~~~p~~~i~W~~~~~~l  262 (267)
                      |.+.|.|.|.|.|++++..+
T Consensus       736 C~~~g~P~p~i~W~k~~~~~  755 (816)
T 3dmk_A          736 CKADGFPKPQVTWKKAVGDT  755 (816)
T ss_dssp             CEEEEESCCEEECCEECSSS
T ss_pred             EEEecCCCCeEEEEecCCCC
Confidence            99999999999999987543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=3.2e-27  Score=186.57  Aligned_cols=201  Identities=18%  Similarity=0.213  Sum_probs=147.0

Q ss_pred             eeEEecCCCeEEEEEEecc--------------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCe-eEEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE--------------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG-KYLCVV   87 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~   87 (267)
                      ..+.+.+|+++.|.|.+.+              +.|++++.....      ..+. ..+++|.|.+++.+|+| .|+|.+
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~------~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a  109 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP------LNRR-VKNGDLWIANYTSNDSHRRYLCTV  109 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE------CSTT-EETTEEEESSCCGGGGGCCEEEEE
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc------cCce-eecceEEEcCCChHhCCCcEEEEE
Confidence            5778999999999999643              899997443221      1122 34678999999999999 999999


Q ss_pred             EcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC-CceE
Q psy3045          88 NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP-VKTI  166 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~  166 (267)
                      .|..|.......+.+...+.....+ .                           ....+.+|+.+.|.|.+.+.| .+.+
T Consensus       110 ~n~~g~~~~~~~~~v~~~~p~~~~~-~---------------------------~~~~~~~G~~v~L~C~~~g~p~~~~i  161 (329)
T 3oq3_B          110 TTKNGDCVQGIVRSHIRKPPSCIPE-T---------------------------YELGTHDKYGIDLYCGILYAKHYNNI  161 (329)
T ss_dssp             ECTTSCEEEEEEEEEECCCCSCEEE-E---------------------------EETTSSTTTCEEEECCCCSCCCCCEE
T ss_pred             EeCCCceeeEEEEEEEcCCCcEecc-c---------------------------cceEEeCCCcEEEEeccCCCCCCceE
Confidence            9988764443333333322111000 0                           011345699999999999999 8999


Q ss_pred             EEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcC--CCCceEE----EEEEEecccCC----CeeecCCce
Q psy3045         167 SWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNE--QESAQAS----GELKLGGRFDP----PVIKESFSD  230 (267)
Q Consensus       167 ~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~----~~l~v~~~~~~----p~~~~~~~~  230 (267)
                      .|++++..+...      .+..|.|.++..+|+|.|+|.|.|.  .+.....    ..+.|..  .+    |.+  .+..
T Consensus       162 ~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~--~~~~~~~~~--~~~~  237 (329)
T 3oq3_B          162 TWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIP--SQDHRFKLI--LDPK  237 (329)
T ss_dssp             EEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEEC--CCCCCEEEE--CCSE
T ss_pred             EEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEEC--CCCCCCcee--cCCe
Confidence            999999887522      2478999999999999999999987  5444333    4555543  22    233  5666


Q ss_pred             eEEecCCcEEEEEEeecCC---CC-cEEEEECCEEc
Q psy3045         231 ETLNPGPNYYFKCIASGNP---TP-EISWYLDGKKL  262 (267)
Q Consensus       231 ~~~~~g~~~~l~C~~~~~p---~~-~i~W~~~~~~l  262 (267)
                      ..+.+|+.+.|.|.+.|.|   ++ .+.|+++|..+
T Consensus       238 ~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             eEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            7889999999999999998   67 89999999875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.95  E-value=8.4e-27  Score=189.03  Aligned_cols=219  Identities=21%  Similarity=0.347  Sum_probs=157.7

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEE-EEeeEEEEeec-----ccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEA-----KVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~-----~~~d   79 (267)
                      ....|...|  .+..+.+|++++|.|.+.+      +.|++++....    .....+.. ..+++|.|.++     +.+|
T Consensus        20 ~~~~~~~~P--~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~----~~~~~~~~~~~~~~l~i~~~~~~~~~~~D   93 (403)
T 3laf_A           20 RSLHFVSEP--SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA----LGMDDRKQQLPNGSLLIQNILHSRHHKPD   93 (403)
T ss_dssp             CSSEEEECC--CCEEECTTCCEEECCEEECTTCCCEEEEEETTEECC----TTSCTTEEECTTSCEEECSCCCBTTBCSS
T ss_pred             eeEEEEeCC--CceEEecCCcEEEEEEcCCCCCCceEEEEECCEECc----cCCcccEEEecCCcEEEeeeeccCCCCCc
Confidence            345666666  7899999999999999976      99999633211    11122222 23456777777     6779


Q ss_pred             CeeEEEEEEcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          80 SGKYLCVVNNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      +|.|+|.+.+..+..  +..+.+.|..++.....                             +....+.+|+.+.|.|.
T Consensus        94 ~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~-----------------------------~~~~~~~~G~~v~l~C~  144 (403)
T 3laf_A           94 EGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ-----------------------------TESITAFMGDTVLLKCE  144 (403)
T ss_dssp             CEEEEEEEECGGGCEEECCCEEEEECCCCEECSC-----------------------------CCCEEEETTSCEEECCC
T ss_pred             ceEEEEEEEeCCCccEEEEEEEEEecCCCccccC-----------------------------CCcEEEEcCCeEEEEEE
Confidence            999999999654433  33445555443332222                             22337888999999999


Q ss_pred             eCCCCCceEEEEECCccCCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEecccCC---Cee
Q psy3045         158 YEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDP---PVI  224 (267)
Q Consensus       158 ~~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~~~~~---p~~  224 (267)
                      +.+.|.+.+.|++++..+..         .....|.|.++..+|+|.|+|.+.|..+... ....+.+......   +.+
T Consensus       145 ~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~  224 (403)
T 3laf_A          145 VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF  224 (403)
T ss_dssp             EECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEE
T ss_pred             EcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceE
Confidence            99999899999999987742         1346899999999999999999999876533 3455555432111   234


Q ss_pred             ecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+...
T Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  265 (403)
T 3laf_A          225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR  265 (403)
T ss_dssp             EECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCS
T ss_pred             ecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCC
Confidence            44566677889999999999999999999999999988653

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=184.73  Aligned_cols=213  Identities=15%  Similarity=0.227  Sum_probs=140.0

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      |.|....  ..+.+.+|+++.|.|.+.+ +.|++++.............   ...+.|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 P~i~~~~--~~~~v~~G~~v~L~C~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            1 LVVTPPG--PELVLNVSSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDG---TFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CCBCSSC--SEEECCTTCCEEEEEEESSCCEEEBTTBCCSEEEEECTTS---CEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             CeecCCC--CeEEEeCCCcEEEEEeccceEEEECCCCCcccceeccCCC---ceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            4555555  6889999999999999999 99999744321111100010   1246899999999999999999998876


Q ss_pred             c---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEE
Q psy3045          93 G---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWM  169 (267)
Q Consensus        93 ~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~  169 (267)
                      .   ....+.+.|..+.........                         ......+.+|+.+.|.|.+. .|.+.+.|+
T Consensus        76 ~~~~~~~~~~v~v~~p~~~~~~~~~-------------------------~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~  129 (289)
T 3mjg_X           76 LETDERKRLYIFVPDPTVGFLPNDA-------------------------EELFIFLTEITEITIPCRVT-DPQLVVTLH  129 (289)
T ss_dssp             ---CCCEEEEEECCCTTCCBCCCCH-------------------------HHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred             CCcCcEEeEEEEEECCCcCcccCCC-------------------------CcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence            5   233444444322111111000                         00013688899999999998 677889999


Q ss_pred             ECC--ccCCCC--CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEE
Q psy3045         170 KDG--KPVPDH--NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI  244 (267)
Q Consensus       170 ~~~--~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~  244 (267)
                      +++  ..+...  ....+.    ...|+|.|+|.|.+..+.... ...+.+... .+|.+...+....+.+|+.+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~i~~~~~~~~v~~G~~v~L~C~  204 (289)
T 3mjg_X          130 EKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSINVSVNAVQTVVRQGENITLMCI  204 (289)
T ss_dssp             ESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCCCEEEESCSEEETTSCEEEEEE
T ss_pred             eCCCCCccceeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCCcEEeCCcceeEcCCCEEEEEE
Confidence            864  333211  112222    357899999999976644333 344555432 4666666666678999999999999


Q ss_pred             eecCCCCcEEEEECCEEc
Q psy3045         245 ASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       245 ~~~~p~~~i~W~~~~~~l  262 (267)
                      +.|.|.|.+.|+++++.+
T Consensus       205 ~~g~p~p~v~W~~~~~~~  222 (289)
T 3mjg_X          205 VIGNEVVNFEWTYPRKES  222 (289)
T ss_dssp             EESCSSBEEEEECTTSSS
T ss_pred             ECCCCCcceEEEcCCccC
Confidence            999999999999877643

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=6.3e-27  Score=196.03  Aligned_cols=216  Identities=19%  Similarity=0.304  Sum_probs=149.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecc--------ccCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVA--------VPLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|+++.|.|.+.+     +.|++++.+......        .....|+..    ...+|.|.+++.+|+|.|+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (523)
T 2rcj_C            8 PSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYC   87 (523)
T ss_pred             CceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEE
Confidence            5789999999999999986     999997433221110        112344442    23589999999999999999


Q ss_pred             EEEcCCCcc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          86 VVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        86 ~~~~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      .+.+..|..   ...+.|.|...+.  ..+...                       ..+....+.+|+.+.|.|.+.+.|
T Consensus        88 ~a~n~~g~~~~~~~~~~l~V~~~~~--~~P~~~-----------------------~~~~~~~~~~g~~v~l~C~~~g~~  142 (523)
T 2rcj_C           88 ASWNSSDNSYVFGTGTKVTVLGQPK--ANPTVT-----------------------LFPPSSEELQANKATLVCLISDFY  142 (523)
T ss_pred             EEccCCCccccccCceEEEeccCCC--cCCeEE-----------------------ecCCcccccCCCceEEEEEecccc
Confidence            999876532   2345666643211  011110                       111222455799999999999886


Q ss_pred             Cc--eEEEEECCccCCCCC---------C------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe-cccCCCee
Q psy3045         163 VK--TISWMKDGKPVPDHN---------E------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG-GRFDPPVI  224 (267)
Q Consensus       163 ~~--~~~W~~~~~~~~~~~---------~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~-~~~~~p~~  224 (267)
                      ++  .+.|+++|..+..+.         .      +.|.|..+..+|+|.|+|.|.|..+....+..+.+. ....+|.+
T Consensus       143 p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v  222 (523)
T 2rcj_C          143 PGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSV  222 (523)
T ss_pred             CCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEE
Confidence            54  999999998875321         1      258999999999999999999988766555543221 12345666


Q ss_pred             ecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcC
Q psy3045         225 KESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  263 (267)
Q Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~  263 (267)
                      ........+.+|+.+.|.|.+.|. |.| .|.|+++|..+.
T Consensus       223 ~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~  263 (523)
T 2rcj_C          223 FPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSG  263 (523)
T ss_pred             EecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccc
Confidence            544434456889999999999986 777 899999997653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=5.7e-28  Score=190.72  Aligned_cols=217  Identities=18%  Similarity=0.277  Sum_probs=147.3

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccc---cCCceEE---------EEeeEEEEeecc
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV---PLNDRVK---------QVSGTLIIKEAK   76 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~---~~~~~~~---------~~~~~l~i~~~~   76 (267)
                      .|...+  ..+.+.+|+++.|.|.+.+      +.|++++.........   ....|+.         ....+|.|.+++
T Consensus         5 ~v~~~p--~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            5 QVIQPD--KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CEECCC--SEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             EEEcCC--CceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            455555  7899999999999999986      9999964321110000   0112333         334579999999


Q ss_pred             cCCCeeEEEEEEcCCCccE-----EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          77 VEDSGKYLCVVNNSVGGES-----VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      .+|+|.|+|.+.+..+...     ..+.|.|...+...   ...                         .....+.+|+.
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p---~i~-------------------------~~~~~~~~g~~  134 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAP---VVS-------------------------GPAARATPQHT  134 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCC---EEE-------------------------CCSSCBCTTCE
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCc---eee-------------------------ccccccCCCCE
Confidence            9999999999998765421     23466666543211   000                         01125678999


Q ss_pred             EEEEeEeCCCCCc--eEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc---eEEEE
Q psy3045         152 AQFTCKYEGNPVK--TISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA---QASGE  212 (267)
Q Consensus       152 v~l~C~~~~~p~~--~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~  212 (267)
                      +.|.|.+.+.|++  .+.|++++..+....              .+.|.|.....+|.|.|+|.|.|..+..   ..+..
T Consensus       135 ~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~  214 (327)
T 2wng_A          135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTAN  214 (327)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEE
T ss_pred             EEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEE
Confidence            9999999988755  999999998876321              1245666666667899999999987653   22333


Q ss_pred             EEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         213 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       213 l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      +.+.. ..+|.+...+..  +.+|+.+.|.|.+.|.|++  .|.|++||+.+..
T Consensus       215 ~~~~v-~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  265 (327)
T 2wng_A          215 LSETI-RVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT  265 (327)
T ss_dssp             GGGTB-CBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEE
T ss_pred             ecccc-CCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccC
Confidence            32222 356776665443  6789999999999996544  8999999998753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=7e-27  Score=183.12  Aligned_cols=217  Identities=16%  Similarity=0.190  Sum_probs=146.4

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ..+.+.+|+.+.|.|....      +.|++++..      +....++...    ...|.|.+++.+|+|.|+|.+.|..|
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~------i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g   82 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVS------TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDG   82 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEE------CTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEE------CCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCC
Confidence            4678999999999998864      999996432      1222333322    26899999999999999999999887


Q ss_pred             ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC-CCCCceEEEEEC
Q psy3045          93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKD  171 (267)
Q Consensus        93 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~  171 (267)
                      ... ...+.|...........                ...+|...........+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus        83 ~~~-s~~l~v~~~~~~~~~~~----------------~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~  145 (312)
T 2y23_A           83 IAS-SYLIDEEELKRLLALSH----------------EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN  145 (312)
T ss_dssp             CCE-EEEECHHHHHHHHHHHH----------------HHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEET
T ss_pred             cEE-EEEEEEeeeeeeecccc----------------cCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEEC
Confidence            543 44454432110000000                000000000001133788899999999998 789999999999


Q ss_pred             CccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec------------------ccCCC
Q psy3045         172 GKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG------------------RFDPP  222 (267)
Q Consensus       172 ~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~------------------~~~~p  222 (267)
                      +..+....           ...|.|.++..+|+|.|+|.+.+...  .....+.+..                  ...+|
T Consensus       146 ~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (312)
T 2y23_A          146 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP  223 (312)
T ss_dssp             TEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc--eEEEEEEEcchhhhhhcccccccccchhhccCC
Confidence            98876532           12399999999999999999986543  3333333310                  01235


Q ss_pred             eeecCCceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcCCC
Q psy3045         223 VIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~~~  265 (267)
                      .+.... ...+.+|+.+.|.|.+.+.|+| .+.|+++|+.+..+
T Consensus       224 ~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~  266 (312)
T 2y23_A          224 HFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD  266 (312)
T ss_dssp             EEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEE
T ss_pred             ceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCC
Confidence            444322 3678899999999999999998 99999999988643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=5.2e-27  Score=179.87  Aligned_cols=203  Identities=18%  Similarity=0.198  Sum_probs=148.2

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeec---ccC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEA---KVE   78 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~   78 (267)
                      ++.+|.+....     .+.+|++++|.|.+.+        +.|++++...        ...+...+..+.+..+   +..
T Consensus         3 P~~~p~~~~~~-----~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l--------~~~~~~~~~~~~~~~~~~~~~~   69 (265)
T 2oz4_A            3 PATPPQLVSPR-----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--------NPTVTYGNDSFSAKASVSVTAE   69 (265)
T ss_dssp             CSSCCEEECCS-----EEETTEEEEEEEEEESCSCGGGCEEEEEETTEEC--------CCEEEECSSEEEEEEEEEECGG
T ss_pred             CCCCCccccCc-----eEecCCCEEEEEEccCCCCCcceEEEEEeCCEEC--------CceEeeCCCeEEEEeecccccc
Confidence            45677776543     7899999999999876        8999963321        1133333445555555   778


Q ss_pred             CCee--EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          79 DSGK--YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        79 d~G~--Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      |+|.  |+|.+.|..+.......|.|...+.+....                             ....+.+|+.+.|.|
T Consensus        70 d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~-----------------------------~~~~v~~G~~v~l~C  120 (265)
T 2oz4_A           70 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL-----------------------------TKPEVSEGTEVTVKC  120 (265)
T ss_dssp             GCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEE-----------------------------SCSEEETTCEEEEEE
T ss_pred             cCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeec-----------------------------CCceecCCCcEEEEE
Confidence            8875  999999998887788888887643311111                             112577899999999


Q ss_pred             EeCCCCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCC-CCce---EEEEEEEecccCCCeeecC--Cc
Q psy3045         157 KYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQ---ASGELKLGGRFDPPVIKES--FS  229 (267)
Q Consensus       157 ~~~~~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~---~~~~l~v~~~~~~p~~~~~--~~  229 (267)
                      .+.  |.+.+.|  +|..+.. +....|.+..+..+|.|.|+|.|.|.. |...   ..+.+.|.   .+|.+...  +.
T Consensus       121 ~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~---~~p~~~~~~~p~  193 (265)
T 2oz4_A          121 EAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL---YGPRLDERDCPG  193 (265)
T ss_dssp             ECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE---EEEECCGGGSCS
T ss_pred             Ecc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE---eCCccccccCCC
Confidence            988  8889999  8877743 244668888888999999999998644 5544   44556554   34444333  45


Q ss_pred             eeEEecCCcEEEEEEeecCCCCcEEEEECCEE
Q psy3045         230 DETLNPGPNYYFKCIASGNPTPEISWYLDGKK  261 (267)
Q Consensus       230 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~  261 (267)
                      ...+.+|+.+.|.|.+.|+|.|.+.|+++|..
T Consensus       194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~  225 (265)
T 2oz4_A          194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTF  225 (265)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTE
T ss_pred             ccEEcCCCeEEEEeECccCCCCeEEEEECCcc
Confidence            67889999999999999999999999999973

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=3.5e-27  Score=185.32  Aligned_cols=214  Identities=14%  Similarity=0.204  Sum_probs=152.5

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..+|.|...|  . ..+.+|++++|.|.+.+    +.|+|++......      ......+..|.|.+++.+|+|.|+|.
T Consensus        22 ~~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (316)
T 3vh8_G           22 QDKPFLSAWP--S-AVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPI------FHGRIFQESFNMSPVTTAHAGNYTCR   92 (316)
T ss_dssp             --CCEEEEES--C-SEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCH------HHHCCBSSCEEECSCCGGGCEEEEEE
T ss_pred             CCCCEeeccC--C-CccCCCCCEEEEEEccCCCceEEEEeCCCcccee------ecCCcceEEEEECCCCcccCeEEEEE
Confidence            4478888777  3 57889999999999988    9999964332110      01112356899999999999999999


Q ss_pred             EEcCCC-----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          87 VNNSVG-----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        87 ~~~~~~-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      +.+..+     ..+..+.|.|...+.   .+...                       ..+.. .+.+|+.++|.|.+. .
T Consensus        93 a~~~~~~~~~~~~s~~~~l~V~~~~~---~p~~~-----------------------~~~~~-~v~~G~~v~L~C~~~-~  144 (316)
T 3vh8_G           93 GSHPHSPTGWSAPSNPVVIMVTGNHR---KPSLL-----------------------AHPGP-LVKSGERVILQCWSD-I  144 (316)
T ss_dssp             EBCSSSSSSBCCCCCCEEEEEECSSC---CCEEE-----------------------EESCS-EEETTCCEEEEEEES-S
T ss_pred             EEcCCCCcceecCCCcEEEEEecCCC---CCeEE-----------------------ecCCC-ccCCCCeEEEEEcCC-C
Confidence            986432     234556666654221   01111                       01111 477899999999995 4


Q ss_pred             CCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCc-----eEEEEEEEecccCCCeeec
Q psy3045         162 PVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-----QASGELKLGGRFDPPVIKE  226 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~p~~~~  226 (267)
                      +.+.+.|++++..+...          ....|.|.++..+|+|.|+|.|.|..+..     .....+.|.....+|.+..
T Consensus       145 ~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~  224 (316)
T 3vh8_G          145 MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSA  224 (316)
T ss_dssp             CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEE
T ss_pred             CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEe
Confidence            56689999999877421          34679999999999999999999987642     3455666765556777776


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      .+.. .+.+|+.+.|.|.+. .|.+.+.|+|+|..+.
T Consensus       225 ~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          225 QPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHE  259 (316)
T ss_dssp             ESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCC
T ss_pred             CCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCC
Confidence            6543 678999999999997 5778999999997654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=8.5e-28  Score=188.61  Aligned_cols=212  Identities=21%  Similarity=0.257  Sum_probs=146.3

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCccee-------ccccCCceEE---------EEeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRK-------VAVPLNDRVK---------QVSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~-------~~~~~~~~~~---------~~~~~l~i~~~~   76 (267)
                      ..+.+..|++|+|.|.+.+          +.|+|++......       .......+..         ..+.+|.|.+++
T Consensus         8 ~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (313)
T 4fqp_A            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (313)
T ss_dssp             SEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCC
Confidence            5788899999999999875          6799974432111       0111122222         134579999999


Q ss_pred             cCCCeeEEEEEEcC-CCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNS-VGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+. .+.....+.|.+...|......                             ....+..++.+.+.
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~-----------------------------~~~~~~~~~~~~~~  138 (313)
T 4fqp_A           88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV-----------------------------QKVQLTGEPVPMAR  138 (313)
T ss_dssp             GGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEE-----------------------------CCBCCCSSCEEEEE
T ss_pred             hhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecc-----------------------------cceEeecCceEEEE
Confidence            99999999998644 3445555555554433211111                             11144557778889


Q ss_pred             eEeC-CCCCceEEEEECCccCCCC-------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCC
Q psy3045         156 CKYE-GNPVKTISWMKDGKPVPDH-------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP  222 (267)
Q Consensus       156 C~~~-~~p~~~~~W~~~~~~~~~~-------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p  222 (267)
                      |.+. +.|.+.+.|++++..+...       +     .+.|.+.....+|.|.|+|.|.|..+.......+.+.+. .+|
T Consensus       139 C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P  217 (313)
T 4fqp_A          139 CVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-YPP  217 (313)
T ss_dssp             EEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC-EEE
T ss_pred             EEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc-cCC
Confidence            9865 6788999999998766421       1     135788888899999999999998877666555555443 456


Q ss_pred             eeecCC-ceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcCC
Q psy3045         223 VIKESF-SDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       223 ~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~~  264 (267)
                      .+...+ ....+.+|+.+.|.|.+.|+|.| .|.|+++|..+..
T Consensus       218 ~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~  261 (313)
T 4fqp_A          218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP  261 (313)
T ss_dssp             EEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT
T ss_pred             ccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC
Confidence            665433 34456678999999999999999 6999999988754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=191.57  Aligned_cols=214  Identities=19%  Similarity=0.248  Sum_probs=149.8

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceec-----------cccCCceEEE-----EeeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKV-----------AVPLNDRVKQ-----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-----------~~~~~~~~~~-----~~~~l~i~~~~~~d~   80 (267)
                      +.+++.+|++++|.|.+.+      +.|+|++.......           ...+..|+..     .+.+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3568889999999999865      89999643322111           1112233332     235799999999999


Q ss_pred             eeEEEEEEcCC-CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-
Q psy3045          81 GKYLCVVNNSV-GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-  158 (267)
Q Consensus        81 G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-  158 (267)
                      |.|+|.+.+.. +.......+.+...+.....                           ..+.......|+.+.|.|.+ 
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~C~~~  139 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLI---------------------------KGPDSLIDGGNETVAAICIAA  139 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEE---------------------------ECSSCCCTTCSCEEEEEEEEE
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccc---------------------------cccceeEEcCCceEEEEEEec
Confidence            99999998764 44566666666553321110                           00111134457889999985 


Q ss_pred             CCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCC
Q psy3045         159 EGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF  228 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~  228 (267)
                      .+.|.+.+.|++++..+....          .+.|.|..+..+|.|.|+|.|.|..+.......+.+.+. .+|.+...+
T Consensus       140 ~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~~~~~~  218 (308)
T 4fom_A          140 TGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ-YAPEVSVTG  218 (308)
T ss_dssp             EEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC-EEEEECCBC
T ss_pred             CCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe-cCCeeEEcc
Confidence            578999999999998875321          246889999999999999999998877666555555443 355554433


Q ss_pred             -ceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcCC
Q psy3045         229 -SDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       229 -~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~~  264 (267)
                       ....+..|+.+.|.|.+.|.|+| .+.|+|+|..+..
T Consensus       219 ~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~  256 (308)
T 4fom_A          219 YDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPD  256 (308)
T ss_dssp             CCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCS
T ss_pred             cceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCC
Confidence             34456678999999999999998 7999999987654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=2.4e-27  Score=187.35  Aligned_cols=220  Identities=22%  Similarity=0.335  Sum_probs=152.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc---------eeeeecccCcce-----------eccccCCceEEE-----Ee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE---------NMWFKFIEGSSR-----------KVAVPLNDRVKQ-----VS   67 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~-----------~~~~~~~~~~~~-----~~   67 (267)
                      ++.+...+  ..+.+.+|+++.|.|.+.+         +.|++++++...           .....+..|+..     .+
T Consensus        14 ~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~   91 (331)
T 3u83_A           14 PSQVVQVN--DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD   91 (331)
T ss_dssp             -------C--EEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred             CcceEEcC--CcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence            34455554  7899999999999999754         899996432211           111123445443     24


Q ss_pred             eEEEEeecccCCCeeEEEEEE-cCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVN-NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      .+|.|.+++.+|+|.|+|.+. +..+.....+.|.|...+.....                           .......+
T Consensus        92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~---------------------------~~~~~~~~  144 (331)
T 3u83_A           92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE---------------------------GTQAVLRA  144 (331)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE---------------------------ECSSCEEE
T ss_pred             ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceee---------------------------cCCCceee
Confidence            689999999999999999854 55566777788888765432111                           01122356


Q ss_pred             ecC---CCEEEEeE-eCCCCCceEEEEECCccCC------CCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         147 DFG---RPAQFTCK-YEGNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       147 ~~g---~~v~l~C~-~~~~p~~~~~W~~~~~~~~------~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      .+|   +.+.|.|. ..+.|.+.+.|++++....      ..+     ...|.|..+..+|.|.|+|.|.|..+....++
T Consensus       145 ~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  224 (331)
T 3u83_A          145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL  224 (331)
T ss_dssp             CTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred             cCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeE
Confidence            677   77999998 7788999999999633211      011     24577888899999999999999987766666


Q ss_pred             EEEEecccCCCeeec-CCceeEEecCCcEEEEEEeecCCCCc-EEEEECCEEcCC
Q psy3045         212 ELKLGGRFDPPVIKE-SFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLVN  264 (267)
Q Consensus       212 ~l~v~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~l~~  264 (267)
                      .+.|.   .+|.+.. ......+.+|+.+.|.|.+.|.|.|. +.|+++|..+..
T Consensus       225 ~l~V~---~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~  276 (331)
T 3u83_A          225 TLNVQ---YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK  276 (331)
T ss_dssp             ECCEE---EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCT
T ss_pred             EEEEe---cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccc
Confidence            66665   3455543 33444578899999999999999998 999999987754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=194.24  Aligned_cols=223  Identities=16%  Similarity=0.208  Sum_probs=150.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc----cCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV----PLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .+|.+...+  ....+.+|+++.|.|.+.+       +.|++++.........    ....+.....+.|.|.++..+|+
T Consensus       113 ~~P~~~~~~--~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  190 (523)
T 2rcj_C          113 ANPTVTLFP--PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH  190 (523)
T ss_pred             cCCeEEecC--CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCC
Confidence            467666655  4556778999999999986       8999974432211110    01112222345799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |.|+|.+.|..+.....+.+.+..  .....+...                       .......+.+|+.+.|.|.+.+
T Consensus       191 G~Y~C~a~n~~~~~~~~~~~~~~~--~~~~~P~v~-----------------------~~~~~~~~~~G~~~~l~C~~~g  245 (523)
T 2rcj_C          191 RSYSCQVTHEGSTVEKTVAPTECS--ASTKGPSVF-----------------------PLAPSSKSTSGGTAALGCLVKD  245 (523)
T ss_pred             ceEEEEEEecCcccccceeeeecC--CCCcCCEEE-----------------------ecCCCcccccCCceEEEEEEec
Confidence            999999999877654433332211  000111110                       0011124567999999999988


Q ss_pred             C-CCc-eEEEEECCccCCC--------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCee-
Q psy3045         161 N-PVK-TISWMKDGKPVPD--------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI-  224 (267)
Q Consensus       161 ~-p~~-~~~W~~~~~~~~~--------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~-  224 (267)
                      . |.+ .+.|++++..+..        .+     .+.|.|..+..+| |.|+|.|.|..+.......+.+.   .+|.+ 
T Consensus       246 ~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~---~~P~~~  321 (523)
T 2rcj_C          246 YFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPL---SLPSVF  321 (523)
T ss_pred             eeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCC---cCceEE
Confidence            7 766 8999999976532        11     1379999999999 99999999999886666555543   23443 


Q ss_pred             ecCCceeE-EecCCcEEEEEEeecCCC----CcEEEEECCEEcCCC
Q psy3045         225 KESFSDET-LNPGPNYYFKCIASGNPT----PEISWYLDGKKLVNA  265 (267)
Q Consensus       225 ~~~~~~~~-~~~g~~~~l~C~~~~~p~----~~i~W~~~~~~l~~~  265 (267)
                      ...+.... +.+|+.+.|.|.+.|.|+    +.|.|+|+|+.+...
T Consensus       322 ~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~  367 (523)
T 2rcj_C          322 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNA  367 (523)
T ss_pred             ecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCC
Confidence            33343333 788999999999998754    499999999988643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=178.59  Aligned_cols=221  Identities=19%  Similarity=0.240  Sum_probs=159.0

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d   79 (267)
                      +..+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++....     ....++..     ....|.|.+++.+|
T Consensus         1 G~~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d   73 (305)
T 2nzi_A            1 GAMAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-----ADGLKYRIQEFKGGYHQLIIASVTDDD   73 (305)
T ss_dssp             -CCCCEEEECC--CCEEECTTCCEEEEEEEECSSCCEEEEEETTEECC-----CCSSSEEEEEETTTEEEEEESSCCGGG
T ss_pred             CCCCCeeeecc--cceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcc-----cCCCeEEEEECCCCEEEEEEccCChhh
Confidence            35689999888  7899999999999999977     99999633211     11122221     12489999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      +|.|+|.+.|..|.......|.|...+........                        ..+....+..|+.+.|.|.+.
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~------------------------~~~~~~~~~~g~~~~l~C~~~  129 (305)
T 2nzi_A           74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL------------------------EGMGAVHALRGEVVSIKIPFS  129 (305)
T ss_dssp             CSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHH------------------------HSSCCEEEETTCCEEEEEEEE
T ss_pred             CeEEEEEEEcCCCCccceEEEEEecCCccCCCccc------------------------cccccEEecCCCEEEEEEEEC
Confidence            99999999999888778888888765432221110                        011233677899999999999


Q ss_pred             CCCCceEEEEECCccCCCCC---------CCeEEecc-CCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeec---
Q psy3045         160 GNPVKTISWMKDGKPVPDHN---------EPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE---  226 (267)
Q Consensus       160 ~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~---  226 (267)
                      +.|.+.+.|++++..+....         ...|.|.+ +..+|.|.|+|.|.|..|....+..+.+.....+|....   
T Consensus       130 g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~  209 (305)
T 2nzi_A          130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSD  209 (305)
T ss_dssp             EESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEES
T ss_pred             CCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeee
Confidence            99999999999998876432         35688888 999999999999999999888888888875444443211   


Q ss_pred             -CCceeEE------ecCCcEEEEEEeecCCCCcEEEEECCEE
Q psy3045         227 -SFSDETL------NPGPNYYFKCIASGNPTPEISWYLDGKK  261 (267)
Q Consensus       227 -~~~~~~~------~~g~~~~l~C~~~~~p~~~i~W~~~~~~  261 (267)
                       ......+      ..|....+.|.+...+.+...|++.+..
T Consensus       210 ~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~  251 (305)
T 2nzi_A          210 VSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA  251 (305)
T ss_dssp             CCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEE
T ss_pred             ccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccc
Confidence             1111111      2355566778887777778888876543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.95  E-value=2.1e-25  Score=191.24  Aligned_cols=200  Identities=27%  Similarity=0.395  Sum_probs=149.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE-
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV-   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-   96 (267)
                      ....+.+|+++.|.|.+.+     +.|++++...             ..+..|.|.+++.+|+|.|+|.+.|..|.... 
T Consensus       211 ~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i-------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  277 (642)
T 1e07_A          211 LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ-------------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRT  277 (642)
T ss_pred             CCcccccCCEEEEEEEcCCCCCcEEEEEECCeEc-------------ccCCceEEecccccCCeEEEEEEEeCCCceEEe
Confidence            4667899999999999977     9999963211             12357999999999999999999998886543 


Q ss_pred             -EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccC
Q psy3045          97 -ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV  175 (267)
Q Consensus        97 -~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~  175 (267)
                       .+.|.|...+..   +...                        ......+..|+.+.|.|.+.+.| +.+.|+++|..+
T Consensus       278 ~~~~v~v~~~~~~---p~i~------------------------~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l  329 (642)
T 1e07_A          278 TVTTITVYAEPPK---PFIT------------------------SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSL  329 (642)
T ss_pred             eeEEEEEEccCCC---CEEE------------------------cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccC
Confidence             344555432210   0000                        01122455678899999998876 699999999887


Q ss_pred             CCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec
Q psy3045         176 PDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG  247 (267)
Q Consensus       176 ~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  247 (267)
                      ...       .+..|.|..+..+|+|.|+|.|.|..+... ..+.+.|..  .|+.....+....+.+|+.+.|.|.+.|
T Consensus       330 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~g  407 (642)
T 1e07_A          330 PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY--GPDDPTISPSYTYYRPGVNLSLSCHAAS  407 (642)
T ss_pred             CCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEc--CCCCCeecCCceEecCCCcEEEEEEcCc
Confidence            543       357899999999999999999999987643 345566653  4444444556668889999999999999


Q ss_pred             CCCCcEEEEECCEEcCCC
Q psy3045         248 NPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       248 ~p~~~i~W~~~~~~l~~~  265 (267)
                      .|.+.+.|+++|+.+..+
T Consensus       408 ~p~~~i~W~~~g~~~~~~  425 (642)
T 1e07_A          408 NPPAQYSWLIDGNIQQHT  425 (642)
T ss_pred             cCCCeEEEEECCEEcCCC
Confidence            999999999999988654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=1.9e-25  Score=189.46  Aligned_cols=244  Identities=18%  Similarity=0.275  Sum_probs=168.5

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceec-------cccCCceEEEE--e-----eE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKV-------AVPLNDRVKQV--S-----GT   69 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-------~~~~~~~~~~~--~-----~~   69 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+      +.|++++.......       ...+..++...  +     .+
T Consensus       109 V~~~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  186 (585)
T 2ocw_A          109 VSQGPGLLNDT--KVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS  186 (585)
T ss_pred             EecCccccCCC--ccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEE
Confidence            34567887766  7889999999999999985      99999743211000       00123333321  1     27


Q ss_pred             EEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCce--------------------------
Q psy3045          70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA--------------------------  123 (267)
Q Consensus        70 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~--------------------------  123 (267)
                      |.|.+++.+|+|.|+|.+.|..+.....+.|.|...+..     ......|..+                          
T Consensus       187 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~-----~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~  261 (585)
T 2ocw_A          187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPE-----LVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENC  261 (585)
T ss_pred             EEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCc-----eeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCc
Confidence            999999999999999999998887777777777643211     0011111111                          


Q ss_pred             ------------------------------------------EEEEEeecC-----------------CCcccccCCceE
Q psy3045         124 ------------------------------------------QFTCKYEIS-----------------PPLAAGVEPTVQ  144 (267)
Q Consensus       124 ------------------------------------------~~~c~~~~~-----------------~~~~~~~~~~~~  144 (267)
                                                                .+.|.+...                 .++.+...+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~  341 (585)
T 2ocw_A          262 DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV  341 (585)
T ss_pred             ceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCcce
Confidence                                                      335544321                 111122334556


Q ss_pred             EEecCCCEEEEeEeCCCCCceE----EEEE--CCc--cCCCC------------------CC--CeEEeccCCCCCCeEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTI----SWMK--DGK--PVPDH------------------NE--PVFRIDSVRKEDKGMY  196 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~----~W~~--~~~--~~~~~------------------~~--~~l~i~~~~~~d~g~y  196 (267)
                      .+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+...                  ..  ..|.|.++..+|+|.|
T Consensus       342 ~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y  421 (585)
T 2ocw_A          342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFY  421 (585)
T ss_pred             EEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEE
Confidence            7778999999999999988876    7999  876  33210                  11  2389999999999999


Q ss_pred             EEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee----cCCCCcEEEEECCEEcCC
Q psy3045         197 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS----GNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       197 ~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~i~W~~~~~~l~~  264 (267)
                      +|.| |..+.......|.|..  .+|.+.. +....+.+|+.+.|.|.+.    +.|.+.|.|+++|..+..
T Consensus       422 ~C~a-n~~g~~~~~~~l~V~~--~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~  489 (585)
T 2ocw_A          422 WCLT-NGDTLWRTTVEIKIIE--GEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALP  489 (585)
T ss_pred             EEcc-cCCCccceeEEEEEec--Ccccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeee
Confidence            9999 8887777777777753  4555554 5667899999999999997    677789999999987743

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=1.9e-26  Score=184.61  Aligned_cols=180  Identities=15%  Similarity=0.136  Sum_probs=141.5

Q ss_pred             EEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045          25 FKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV   99 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   99 (267)
                      ..+.+|+++.|.|.+.+     +.|++++.            +.......|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~  173 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRG------------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID  173 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSS------------CEEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCE
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCC------------cccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEE
Confidence            36789999999999976     99999532            22345678999999999999999999987655555556


Q ss_pred             EEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC-----CCCceEEEEECCcc
Q psy3045         100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-----NPVKTISWMKDGKP  174 (267)
Q Consensus       100 l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~  174 (267)
                      +.|...+...                                ....+.+|+.+.|.|.+.+     .|.+.+.|+++|..
T Consensus       174 l~v~~~p~~~--------------------------------~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~  221 (363)
T 1wio_A          174 IVVLAFQKAS--------------------------------SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS  221 (363)
T ss_dssp             ECEECCSCSE--------------------------------EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC
T ss_pred             EEEecCCCCC--------------------------------CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC
Confidence            6665433211                                1226778999999998877     77889999999987


Q ss_pred             CCCC-------------------------C--CCeEEeccCCCCCCeEEEEEEEcC--CCCceEEEEEEEecccCCCeee
Q psy3045         175 VPDH-------------------------N--EPVFRIDSVRKEDKGMYQCVIRNE--QESAQASGELKLGGRFDPPVIK  225 (267)
Q Consensus       175 ~~~~-------------------------~--~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~l~v~~~~~~p~~~  225 (267)
                      +...                         .  ...|.|.++..+|+|.|+|.|.|.  .|.......|.|..        
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--------  293 (363)
T 1wio_A          222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--------  293 (363)
T ss_dssp             CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE--------
T ss_pred             ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE--------
Confidence            6541                         1  348999999999999999999999  88777777776641        


Q ss_pred             cCCceeEEecCCcEEEEEEeecCCCCc--EEEEECCEEcCC
Q psy3045         226 ESFSDETLNPGPNYYFKCIASGNPTPE--ISWYLDGKKLVN  264 (267)
Q Consensus       226 ~~~~~~~~~~g~~~~l~C~~~~~p~~~--i~W~~~~~~l~~  264 (267)
                              ..|+.+.|.|.+.|.|+|.  +.|+++|+.+..
T Consensus       294 --------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~  326 (363)
T 1wio_A          294 --------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV  326 (363)
T ss_dssp             --------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE
T ss_pred             --------ecCCCeeEEEEEccccCCCccEEEEeCCCceee
Confidence                    1288899999999999987  999999987753

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.95  E-value=1.3e-26  Score=169.33  Aligned_cols=172  Identities=20%  Similarity=0.249  Sum_probs=130.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....  .......++..  ....|.|.+++..|+|.|
T Consensus         3 ~~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   78 (194)
T 2a38_A            3 TQAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS--TSTLPGVQISFSDGRAKLTIPAVTKANSGRY   78 (194)
T ss_dssp             CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCC--TTTSTTCEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCCeEEccC--CceEEECCCEEEEEEEEEecCCCEEEEEECCEEcc--cccCCceEEEeCCCEEEEEECCCCcccCEEE
Confidence            4578888877  7889999999999999987     99999643221  11111122222  345899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEe---ccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          84 LCVVNNSVGGESVETVLTVTA---PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~---~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      +|.+.+..+.......|.|..   ++.....                             +....+..|+.+.|.|.+.+
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~-----------------------------~~~~~~~~g~~~~l~C~~~g  129 (194)
T 2a38_A           79 SLKATNGSGQATSTAELLVKAETAPPNFVQR-----------------------------LQSMTVRQGSQVRLQVRVTG  129 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCEEEEEEEC-----------------------------CCCEEECTTEEEEEEEEEEE
T ss_pred             EEEEEcCCceEeEEEEEEEccCCCCCEEEeC-----------------------------CccEEEcCCCEEEEEEEEEE
Confidence            999999888777777777763   2211111                             22337888999999999999


Q ss_pred             CCCceEEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         161 NPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .|.+.+.|++++..+.....         ..|.|..+..+|.|.|+|.|.|..|....++.|.|
T Consensus       130 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          130 IPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            99999999999988764322         26889999999999999999999988777777665

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=6.1e-27  Score=187.42  Aligned_cols=198  Identities=17%  Similarity=0.187  Sum_probs=145.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCccee--------ccccCCceEEE-------EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK--------VAVPLNDRVKQ-------VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~--------~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~   82 (267)
                      +.+.+.+|+++.|.|.+.+     +.|++++......        .......|+..       ...+|.|.+++.+|+|.
T Consensus         2 e~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             CeEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            4678999999999999976     9999964211110        00123344432       24579999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |+|.+.+..    ..+.|.|....   ..+                              ...+.+|+.+.|.|.+.+.|
T Consensus        82 Y~C~~~n~~----~~~~l~V~~~~---~~~------------------------------~~~v~~G~~v~l~C~~~~~p  124 (363)
T 1wio_A           82 YICEVEDQK----EEVQLLVFGLT---ANS------------------------------DTHLLQGQSLTLTLESPPGS  124 (363)
T ss_dssp             EEEEETTEE----EEEEEEEEEEE---ESS------------------------------CSSEESBSCEEEEEECCTTC
T ss_pred             EEEEEEECC----CcEEEEEEeCC---CCC------------------------------ceEEecCCCEEEEEEcCCCC
Confidence            999998763    35556655311   010                              01467899999999999999


Q ss_pred             CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEE
Q psy3045         163 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK  242 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~  242 (267)
                      .+.+.|++++..+. .....|.|.++..+|+|.|+|.|.+..+.......+.+.   .+|...   ....+.+|+.+.|.
T Consensus       125 ~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~---~~p~~~---~~~~~~~G~~v~l~  197 (363)
T 1wio_A          125 SPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL---AFQKAS---SIVYKKEGEQVEFS  197 (363)
T ss_dssp             CCCEEEECSSSCEE-EESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEE---CCSCSE---EEEEEETBCCEEEE
T ss_pred             CCeEEEEcCCCccc-ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEe---cCCCCC---CceEEecCCEEEEE
Confidence            99999999987653 356789999999999999999999876555555555554   233221   45578899999999


Q ss_pred             EEeec-----CCCCcEEEEECCEEcCC
Q psy3045         243 CIASG-----NPTPEISWYLDGKKLVN  264 (267)
Q Consensus       243 C~~~~-----~p~~~i~W~~~~~~l~~  264 (267)
                      |.+.+     .|.|.+.|+++|..+..
T Consensus       198 C~~~~~~~~~~P~p~i~W~~~g~~~~~  224 (363)
T 1wio_A          198 FPLAFTVEKLTGSGELWWQAERASSSK  224 (363)
T ss_dssp             CCCCCCCCSSCEEEEEEEEESSCCCCC
T ss_pred             EEEecccccCCCceeEEEecCCCCccc
Confidence            98877     78889999999988765

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.94  E-value=2.4e-26  Score=168.26  Aligned_cols=176  Identities=19%  Similarity=0.246  Sum_probs=133.6

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d   79 (267)
                      +..||.|...+  .+..+.+|+++.|.|.+.+     +.|++++....     ....++..     ....|.|.+++.+|
T Consensus         1 G~~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (197)
T 2j8h_A            1 GAMAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-----ADGLKYRIQEFKGGYHQLIIASVTDDD   73 (197)
T ss_dssp             --CCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-----CCSSSEEEEEETTTEEEEEECSCCGGG
T ss_pred             CCCCCEEEEcC--CccEEcCCCEEEEEEEEeecCCCEEEEEECCEECc-----cCCCcEEEEEcCCCEEEEEECcCCHHh
Confidence            35689998887  7899999999999999977     99999633211     11122221     12389999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      +|.|+|.+.+..+.....+.|.|...+........                        ..+....+.+|+.+.|.|.+.
T Consensus        74 ~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~------------------------~~~~~~~~~~g~~~~l~C~~~  129 (197)
T 2j8h_A           74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL------------------------EGMGAVHALRGEVVSIKIPFS  129 (197)
T ss_dssp             CSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCB------------------------TTBEEEEEETTCCCEEEEEEE
T ss_pred             CEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccc------------------------cccCeEEEeCCCEEEEEEEEE
Confidence            99999999999888788888888765443222110                        112233678899999999999


Q ss_pred             CCCCceEEEEECCccCCCC---------CCCeEEecc-CCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         160 GNPVKTISWMKDGKPVPDH---------NEPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       160 ~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|.+.+.|++++..+...         ....|.|.. +..+|+|.|+|.|.|..|....++.|.|.
T Consensus       130 g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999999999999887543         235788888 99999999999999999887777777664

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=5.2e-26  Score=168.53  Aligned_cols=180  Identities=26%  Similarity=0.403  Sum_probs=135.1

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE-----eeEEEEeeccc-C
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV-----SGTLIIKEAKV-E   78 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~-~   78 (267)
                      +..||.|...+  .+..+.+|+++.|.|.+.+     +.|++++....     ....++...     ...|.|.+++. .
T Consensus         3 g~~pP~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~~   75 (212)
T 2yd1_A            3 GAHPPEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-----GTQSRYTVLEQPGGISILRIEPVRAGR   75 (212)
T ss_dssp             --CCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-----TTSTTEEEEEETTTEEEEEESSCCTTT
T ss_pred             CCCCCEEEcCC--CceEEecCCEEEEEEEEccCCCCeEEEEECCEECC-----CCcceeEEEEcCCCeEEEEEEecCCCC
Confidence            56789999988  7889999999999999987     99999633211     122233221     25899999999 9


Q ss_pred             CCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          79 DSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      |+|.|+|.+.|..+. .+..+.|.|...+.......                      .+...+....+..|+.+.|.|.
T Consensus        76 d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p----------------------~~~~~~~~~~~~~g~~v~l~C~  133 (212)
T 2yd1_A           76 DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFP----------------------VITQGPGTRVIEVGHTVLMTCK  133 (212)
T ss_dssp             TCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCC----------------------EEEECCCCEEEETTCCEEECCE
T ss_pred             cCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCC----------------------eeEeCCCceEeecCCeEEEEEE
Confidence            999999999999888 77788888876432211100                      0111223347788999999999


Q ss_pred             eCCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE-EEEEEecc
Q psy3045         158 YEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-GELKLGGR  218 (267)
Q Consensus       158 ~~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~  218 (267)
                      +.+.|.+.+.|++++..+....      ...|.|.++..+|+|.|+|.|.|..|..... +.|.|...
T Consensus       134 ~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          134 AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             EECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             eccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            9999999999999998876432      3589999999999999999999999877654 67777643

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.94  E-value=3.2e-24  Score=181.97  Aligned_cols=234  Identities=19%  Similarity=0.302  Sum_probs=171.6

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceec--------cccCCceEEEE------eeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKV--------AVPLNDRVKQV------SGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~--------~~~~~~~~~~~------~~~l~i~~~~~~d~   80 (267)
                      ..+.+.+|+++.|.|.+.+        +.|++++.......        ...+..|+...      ..+|.|.+++.+|+
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~   87 (585)
T 2ocw_A            8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS   87 (585)
T ss_pred             ceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccC
Confidence            6789999999999999887        77999744221000        01123444432      24799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCC-c------------------------
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP-L------------------------  135 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~------------------------  135 (267)
                      |.|+|.+.+..+..+..+.|.|...+.+...+.......|..+.|.|.+...++ .                        
T Consensus        88 G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~  167 (585)
T 2ocw_A           88 GRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP  167 (585)
T ss_pred             EEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCc
Confidence            999999999888888888999988887777777777888999999998763211 0                        


Q ss_pred             -------------------c--------------------------------cccCCceEEEecCCCEEEEeEeCCCCC-
Q psy3045         136 -------------------A--------------------------------AGVEPTVQTIDFGRPAQFTCKYEGNPV-  163 (267)
Q Consensus       136 -------------------~--------------------------------~~~~~~~~~~~~g~~v~l~C~~~~~p~-  163 (267)
                                         .                                ....+....+.+|+.+.|.|.+ +.+. 
T Consensus       168 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~-~~~~~  246 (585)
T 2ocw_A          168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL-GPEVA  246 (585)
T ss_pred             cccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEc-CCCCC
Confidence                               0                                0012344456789999999997 4433 


Q ss_pred             --ceEEEE-ECCccCC-------------CC--------CCC--eEEeccCCCCCCeEEEEEEEcCCCCce----EEEEE
Q psy3045         164 --KTISWM-KDGKPVP-------------DH--------NEP--VFRIDSVRKEDKGMYQCVIRNEQESAQ----ASGEL  213 (267)
Q Consensus       164 --~~~~W~-~~~~~~~-------------~~--------~~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~l  213 (267)
                        +.+.|+ +++....             ..        ...  .|.|.++..+|+|.|+|.|.|......    ....|
T Consensus       247 ~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l  326 (585)
T 2ocw_A          247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQL  326 (585)
T ss_pred             CceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEE
Confidence              688897 7773211             00        122  799999999999999999999543321    56667


Q ss_pred             EEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcE----EEEE--CCE
Q psy3045         214 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI----SWYL--DGK  260 (267)
Q Consensus       214 ~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i----~W~~--~~~  260 (267)
                      .|.   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+    .|++  ||.
T Consensus       327 ~V~---~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~  376 (585)
T 2ocw_A          327 FVN---EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGR  376 (585)
T ss_pred             EEe---cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCC
Confidence            665   5667766777778899999999999999999976    7999  886

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=1.7e-24  Score=174.76  Aligned_cols=212  Identities=20%  Similarity=0.296  Sum_probs=153.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceecc-ccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVA-VPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~-~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      +|.|.. +  .+..+.+|+++.|.|.+.+     +.|+++.++...... .....++..    ..+.|.|.+++.+|+|.
T Consensus         1 ~P~i~~-~--~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   77 (389)
T 2jll_A            1 QPHIIQ-L--KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR   77 (389)
T ss_dssp             CCEEEE-C--CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred             CCeEEe-c--CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence            467766 3  4678889999999999988     999997333322111 112334433    24689999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |+|.+.|..|..+..+.|.|..++.+...+..                             ..+..|+.+.|.|.+.+.|
T Consensus        78 Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~-----------------------------~~~~~g~~~~l~C~~~g~p  128 (389)
T 2jll_A           78 YDCEAASRIGGHQKSMYLDIEYAPKFISNQTI-----------------------------YYSWEGNPINISCDVKSNP  128 (389)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEEEECCSCCE-----------------------------EEECTTCCEEEEECEEEES
T ss_pred             EEEEEEeCCCCcceEEEEEEEeCCEEecCcce-----------------------------EEeccCCEEEEEEEEEecC
Confidence            99999999998888889998876654333222                             2677899999999999999


Q ss_pred             CceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCcee
Q psy3045         163 VKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE  231 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~  231 (267)
                      .+.+.|++++..+....           ...|.|.++..+|+|.|+|.|.|..|.......+.+.....+|...    ..
T Consensus       129 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~----~~  204 (389)
T 2jll_A          129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV----KI  204 (389)
T ss_dssp             CCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEE----EE
T ss_pred             CCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcce----EE
Confidence            99999999998876432           3469999999999999999999999887777777665433333211    11


Q ss_pred             EEecCCcEEEEEEee----cCCCC--cEEEEECCE
Q psy3045         232 TLNPGPNYYFKCIAS----GNPTP--EISWYLDGK  260 (267)
Q Consensus       232 ~~~~g~~~~l~C~~~----~~p~~--~i~W~~~~~  260 (267)
                      ....+..+.|.|...    +.|..  .+.|.+++.
T Consensus       205 ~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~  239 (389)
T 2jll_A          205 IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS  239 (389)
T ss_dssp             EEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTC
T ss_pred             eeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCC
Confidence            223457788998742    22322  577887764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=1.9e-26  Score=188.92  Aligned_cols=220  Identities=17%  Similarity=0.285  Sum_probs=143.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee-----ccccCCceEEEEeeEEEEeecccCCC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-----VAVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      +|.+...+  ....+.+|+.+.|.|.+.+       +.|++++......     .......+.....+.|.|.++..+|+
T Consensus       116 ~P~v~~~~--~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  193 (438)
T 1qgc_4          116 APTVSIFP--PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH  193 (438)
T ss_dssp             CCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CCEEEecC--CChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCC
Confidence            56555433  2223346889999999865       8999964321110     01111222223456899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |.|+|.+.|..+.......  +.....   ....                        ..+....+.+|+.+.|.|.+.+
T Consensus       194 G~Y~C~a~n~~~~~~~~~~--~~~~~~---~~~~------------------------~~~~~~~v~~G~~v~L~C~~~g  244 (438)
T 1qgc_4          194 NSYTCEATHKTSTSPIVKS--FNRNEC---EVML------------------------VESGGGLVKPGGSLKLSCTASG  244 (438)
T ss_dssp             CEEEEEEEETTCSSCEEEE--EETTC----CCEE------------------------EEECCEEECTTCCEEEEEEEES
T ss_pred             CeEEEEEEecccCCceecc--cccccc---eeEE------------------------ecCCceEEecCCcEEEEEEEcc
Confidence            9999999998776532222  221100   0000                        0112336888999999999999


Q ss_pred             CC--CceEEEEEC--CccCC-------------------C---------CCCCeEEeccCCCCCCeEEEEEEEcCCC---
Q psy3045         161 NP--VKTISWMKD--GKPVP-------------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQE---  205 (267)
Q Consensus       161 ~p--~~~~~W~~~--~~~~~-------------------~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~---  205 (267)
                      .|  .+.+.|+++  +..+.                   .         .....|.|.++..+|+|.|+|.|.|..+   
T Consensus       245 ~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~  324 (438)
T 1qgc_4          245 FIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEG  324 (438)
T ss_dssp             SCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCC
T ss_pred             cccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCcc
Confidence            88  679999996  43221                   0         1134799999999999999999998433   


Q ss_pred             --CceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcC
Q psy3045         206 --SAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  263 (267)
Q Consensus       206 --~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~  263 (267)
                        .......+.|.. ...+|.+...+....+.+|+.+.|.|.+.|. |.| .|.|+++|..+.
T Consensus       325 ~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~  387 (438)
T 1qgc_4          325 FAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSG  387 (438)
T ss_dssp             CCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSS
T ss_pred             ceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCc
Confidence              222234555542 1234555444333456789999999999997 877 999999998764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=9.3e-26  Score=185.55  Aligned_cols=203  Identities=18%  Similarity=0.200  Sum_probs=146.3

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc----e-----eeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE----N-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~----~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      |...|  .+..+.+|++++|.|.+.+    +     .|++++...      . ..+    ...|.|.+++. |+| |+|.
T Consensus         2 i~~~P--~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~------~-~~~----~~~l~i~~v~~-d~g-Y~C~   66 (450)
T 1z7z_I            2 TSVSP--SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLL------P-GNN----RKVYELSNVQE-DSQ-PMCY   66 (450)
T ss_dssp             CEEES--SEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCS------S-TTT----EEEEEEEEECS-CBC-CEEE
T ss_pred             cccCC--CceEEecCCcEEEEEEccCCCcccccccceeeecceEe------c-CCC----ceEEEEEeccc-CCe-eEEE
Confidence            34445  6889999999999999988    6     899863211      0 111    13789999977 999 9999


Q ss_pred             EEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc--
Q psy3045          87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK--  164 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--  164 (267)
                      +.+..+..+..+.|.|..++....                            ..+....+.+|+.+.|.|.+.+.|++  
T Consensus        67 a~~~~~~~~~~~~l~V~~~P~~~~----------------------------~~~~~~~v~~G~~v~L~C~~~g~~~~~~  118 (450)
T 1z7z_I           67 SNCPDGQSTAKTFLTVYWTPERVE----------------------------LAPLPSWQPVGKNLTLRCQVEGGAPRAN  118 (450)
T ss_dssp             EEETTEEEEEECEEEEEBCCSEEE----------------------------ECCCCSEECTTSEEEEEEEEECCBCGGG
T ss_pred             EeCCCCcceeEEEEEEEeCCCcce----------------------------ecCCCceEeeCCeEEEEEEecCCCCCcC
Confidence            986655567777788776433210                            01122367889999999999998877  


Q ss_pred             -eEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCce--------EEEEEEEecc-cCCCeeecCC
Q psy3045         165 -TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ--------ASGELKLGGR-FDPPVIKESF  228 (267)
Q Consensus       165 -~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~--------~~~~l~v~~~-~~~p~~~~~~  228 (267)
                       .+.|++++..+...      ....|.|..+..+|+|.|+|.|.|..+...        ....+.+... ..+|.+... 
T Consensus       119 ~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~-  197 (450)
T 1z7z_I          119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP-  197 (450)
T ss_dssp             EEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC-
T ss_pred             cEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc-
Confidence             99999999876432      235899999999999999999999866432        1223333321 123443322 


Q ss_pred             ceeEEecCCcEEEEEEeecC-C--CCcEEEEECCEEcCC
Q psy3045         229 SDETLNPGPNYYFKCIASGN-P--TPEISWYLDGKKLVN  264 (267)
Q Consensus       229 ~~~~~~~g~~~~l~C~~~~~-p--~~~i~W~~~~~~l~~  264 (267)
                        ..+.+|+.+.|.|.+.|. |  .+.+.|+++|+.+..
T Consensus       198 --~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~  234 (450)
T 1z7z_I          198 --RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (450)
T ss_dssp             --SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC
T ss_pred             --eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc
Confidence              578899999999999998 6  679999999988754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=1.4e-25  Score=184.41  Aligned_cols=195  Identities=17%  Similarity=0.192  Sum_probs=132.8

Q ss_pred             EEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEE---eecccCCCe--eEEEEEEcCC
Q psy3045          25 FKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLII---KEAKVEDSG--KYLCVVNNSV   91 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G--~Y~C~~~~~~   91 (267)
                      ..+.+|+.+.|.|.+.+        +.|++++.....        ++......+.+   .+++.+|+|  .|+|.+.|..
T Consensus       198 ~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~  269 (450)
T 1z7z_I          198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN  269 (450)
T ss_dssp             SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--------EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETT
T ss_pred             eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--------eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCC
Confidence            58899999999999875        889996332211        22222222222   277899999  9999999998


Q ss_pred             CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEEC
Q psy3045          92 GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD  171 (267)
Q Consensus        92 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~  171 (267)
                      +.......|.|...+.+.+..                             ....+.+|+.+.|.|.+.  |.+.+.|  +
T Consensus       270 g~~~~~~~l~V~~~~~p~i~~-----------------------------~~~~v~~G~~v~l~C~~~--p~p~i~W--~  316 (450)
T 1z7z_I          270 QSQETLQTVTIYSFPAPNVIL-----------------------------TKPEVSEGTEVTVKCEAH--PRAKVTL--N  316 (450)
T ss_dssp             EEEEEEEEEEEECCCCCEEEE-----------------------------SCSEEETTCEEEEEEEC-------------
T ss_pred             ccEEEEEEEEEecCCCCeEec-----------------------------CCeeEeCCCcEEEEEecC--CCCEeEE--C
Confidence            888778888887643321110                             112688899999999987  8889999  7


Q ss_pred             CccC-CCCCCCeEEeccCCCCCCeEEEEEEEcCCC-Cc---eEEEEEEEecccCCCeeecCC--ceeEEecCCcEEEEEE
Q psy3045         172 GKPV-PDHNEPVFRIDSVRKEDKGMYQCVIRNEQE-SA---QASGELKLGGRFDPPVIKESF--SDETLNPGPNYYFKCI  244 (267)
Q Consensus       172 ~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~---~~~~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~  244 (267)
                      |..+ ..+....|.|..+..+|+|.|+|.|.|..+ ..   ..+..|.|.   .+|.+....  .+..+.+|+.+.|.|.
T Consensus       317 g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~---~~P~~~~~~~p~~~~~~~g~~~~l~C~  393 (450)
T 1z7z_I          317 GVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL---YGPRLDERDCPGNWTWPENSQQTPMCQ  393 (450)
T ss_dssp             -------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEE---EEEECCSTTSCSEEEEETTCEECCCCC
T ss_pred             CEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEe---cCCceeeccCCCceeEcCCCeEEEEEe
Confidence            7777 344567899999999999999999997654 32   245555554   455555543  5668999999999999


Q ss_pred             eecCCCCcEEEEECCEEcC
Q psy3045         245 ASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       245 ~~~~p~~~i~W~~~~~~l~  263 (267)
                      +.|+|.|.+.|+|+|..+.
T Consensus       394 ~~g~P~p~i~W~~~g~~~~  412 (450)
T 1z7z_I          394 AWGNPLPELKCLKDGTFPL  412 (450)
T ss_dssp             CEEESCCEEEEEETTTEEC
T ss_pred             cccCCCCcEEEEECCcccC
Confidence            9999999999999997543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.93  E-value=6.6e-26  Score=185.77  Aligned_cols=207  Identities=19%  Similarity=0.318  Sum_probs=140.6

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|+++.|.|.+.+         +.|+++..+.....        ......|+...    ..+|.|.+++.+|+|
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (438)
T 1qgc_4            9 ASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVA   88 (438)
T ss_dssp             SEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCe
Confidence            6889999999999999864         89999643322110        01123444332    358999999999999


Q ss_pred             eEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          82 KYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        82 ~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      .|+|.+.+..+.. ...+.|.|....   ..+....                      . +.......|+.+.|.|.+.+
T Consensus        89 ~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~----------------------~-~~~~~~~~g~~~~l~C~~~g  142 (438)
T 1qgc_4           89 TYYCQQSNEVPLTFGAGTKLDLKRAD---AAPTVSI----------------------F-PPSSEQLTSGGASVVCFLNN  142 (438)
T ss_dssp             EEEEEECSSTTCCBCCCEEEEECCCC---BCCEEEE----------------------E-CCCHHHHHTTEEEEEEEEEE
T ss_pred             eEEEEEecCCCccccCceeEEecCCC---CCCEEEe----------------------c-CCChhhccCCceEEEEEEcc
Confidence            9999999887642 334555554211   1111110                      0 00012235789999999987


Q ss_pred             -CCCc-eEEEEECCccCCCC-----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCC
Q psy3045         161 -NPVK-TISWMKDGKPVPDH-----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP  222 (267)
Q Consensus       161 -~p~~-~~~W~~~~~~~~~~-----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p  222 (267)
                       .|.+ .+.|+++|..+...           +     ...|.|..+..+|+|.|+|.|.|..+.......  +.....++
T Consensus       143 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~--~~~~~~~~  220 (438)
T 1qgc_4          143 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS--FNRNECEV  220 (438)
T ss_dssp             EBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEE--EETTC-CC
T ss_pred             ccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecc--ccccccee
Confidence             5666 99999999876543           1     136889999999999999999998876543333  33221223


Q ss_pred             eeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEEC
Q psy3045         223 VIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  258 (267)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  258 (267)
                      .+ ..+....+.+|+.+.|.|.+.|.|  .+.+.|+|+
T Consensus       221 ~~-~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  257 (438)
T 1qgc_4          221 ML-VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQ  257 (438)
T ss_dssp             EE-EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EE-ecCCceEEecCCcEEEEEEEcccccCCcEEEEEEC
Confidence            33 334556789999999999999998  579999996

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=4.9e-25  Score=161.17  Aligned_cols=173  Identities=19%  Similarity=0.300  Sum_probs=133.2

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      ...+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++...      ....+...    ...+|.|.+++.+|+
T Consensus         4 ~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~   75 (197)
T 3lcy_A            4 SGEAPGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL------IQSRKYKMSSDGRTHTLTVMTEEQEDE   75 (197)
T ss_dssp             CCEEEEEEECC--CCEEEETTSEEEEEEEEEEESCCEEEEEETTEEE------CCCSSEEEEESSSEEEEEEECCSGGGC
T ss_pred             cCCCCcccccC--CceEEeCCCcEEEEEEEecCCCCEEEEEECCEEC------CCCccEEEEeCCCEEEEEEecCCccCC
Confidence            34578888887  7899999999999999977     9999963221      11222222    123899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |.|+|.+.+..+.......|.|...+.......                          ......+..|+.+.|.|.+.+
T Consensus        76 G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~--------------------------~~~~~~~~~g~~~~l~C~~~~  129 (197)
T 3lcy_A           76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYP--------------------------LKEKYYGAVGSTLRLHVMYIG  129 (197)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEEEEECTTSC--------------------------CCSEEEEETTSCEEEEEEEEE
T ss_pred             EEEEEEEECCCCceeEEEEEEEEcCCCCCCCcc--------------------------CCcceeecCCCeEEEEEEEee
Confidence            999999999888877778888876544322110                          012236778999999999999


Q ss_pred             CCCceEEEEECCccCCCCCC---------CeEEeccCCC-CCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         161 NPVKTISWMKDGKPVPDHNE---------PVFRIDSVRK-EDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .|.+.+.|++++..+.....         ..|.|.++.. +|+|.|+|.|.|..|....++.|.|.
T Consensus       130 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          130 RPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             ESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            99999999999988865432         5788999985 89999999999999988888777775

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=162.16  Aligned_cols=171  Identities=18%  Similarity=0.304  Sum_probs=125.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEec-c-----eeeeecccCcceecc----ccCCc---eEEEEeeEEEEeecccC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVA----VPLND---RVKQVSGTLIIKEAKVE   78 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~----~~~~~---~~~~~~~~l~i~~~~~~   78 (267)
                      ++|.|...+  .+..+.+|+++.|.|.+. +     +.|++++........    .....   .....+..|.|.+++..
T Consensus         1 e~~~~~~~p--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   78 (195)
T 2c5d_C            1 EESPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS   78 (195)
T ss_dssp             -CCSEEECC--CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST
T ss_pred             CCCeeccCh--hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEecccc
Confidence            368888888  789999999999999999 5     999996332111100    00000   01111568999999999


Q ss_pred             CCeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          79 DSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      |+|.|+|.+.+..+.. ...+.|.|..++.+...+                             ....+.+|+.+.|.|.
T Consensus        79 d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~-----------------------------~~~~~~~g~~~~l~C~  129 (195)
T 2c5d_C           79 DTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP-----------------------------EDRTVAANTPFNLSCQ  129 (195)
T ss_dssp             TCEEEEEEEEETTEEEECCCEEEEECCSCEEEECC-----------------------------CCEEECTTCCEEEEEE
T ss_pred             CCcEEEEEEEeCCCceecccEEEEEecCCeEEcCC-----------------------------CcEEEcCCCEEEEEeE
Confidence            9999999999977653 333667776554332222                             2237788999999999


Q ss_pred             eCCCCCc-eEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEE
Q psy3045         158 YEGNPVK-TISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKL  215 (267)
Q Consensus       158 ~~~~p~~-~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v  215 (267)
                      +.+.|.+ .+.|++++..+...    ....|.|.++.  |+|.|+|.|.|..|... ....|.|
T Consensus       130 ~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          130 AQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999988 99999999988654    45788888877  78999999999988765 4666665

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=1.8e-24  Score=157.43  Aligned_cols=165  Identities=22%  Similarity=0.300  Sum_probs=125.7

Q ss_pred             CCCcccCCCCceeEEecC-CCeEEEEEEecc-------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDIIRFKKPG-GESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~-g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .||.|...+   ...+.+ |+++.|.|.+.+       +.|++++....       ..+....+..|.|.+++.+|+|.|
T Consensus         2 ~~P~i~~~~---~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y   71 (190)
T 2wv3_A            2 NEPRIVTSE---EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT-------ATRKNASNMEYRINKPRAEDSGEY   71 (190)
T ss_dssp             -CCEEEECC---CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECT-------TCCBCCSEEEEEESSCCGGGCEEE
T ss_pred             CCCcccccc---eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECc-------ccceEeccEEEEEecCCcccCEEE
Confidence            467777643   566667 999999999876       89999633211       111112457899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      +|.+.+. +.....+.|.|..++.....+.                             ...+..|+.+.|.|.+.+.|.
T Consensus        72 ~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~-----------------------------~~~~~~g~~v~l~C~~~g~p~  121 (190)
T 2wv3_A           72 HCVYHFV-SAPKANATIEVKAAPDITGHKR-----------------------------SENKNEGQDAMMYCKSVGYPH  121 (190)
T ss_dssp             EEEEEET-TEEEEEEEEEEECCCEEEEECS-----------------------------EEEEETTSCEEEEEEEECSSC
T ss_pred             EEEEEeC-CcccccEEEEEecCCcccccCC-----------------------------cceeeCCCcEEEEEEeCccCC
Confidence            9999998 7778888888877554332222                             236888999999999999999


Q ss_pred             ceEEEEE--CCccCCC---C---------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         164 KTISWMK--DGKPVPD---H---------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       164 ~~~~W~~--~~~~~~~---~---------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.+.|++  ++..+..   .         ....|.|.++. .+|.|.|+|.|.|..|....+..|.|.
T Consensus       122 p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          122 PEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999  6655421   1         12379999999 799999999999999988888877775

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=4.6e-25  Score=159.42  Aligned_cols=164  Identities=22%  Similarity=0.342  Sum_probs=121.0

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--E----EeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--Q----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~----~~~~l~i~~~~~~d~G   81 (267)
                      +|.|...+  ....+.+|+++.|.|.+.+     +.|++++...      ....+..  .    ....|.|.+++.+|+|
T Consensus         2 ~~~~~~~p--~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   73 (182)
T 1rhf_A            2 GLKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVV------QNLDQLYIPVSEQHWIGFLSLKSVERSDAG   73 (182)
T ss_dssp             -----CCC--EEEEEETTCCEEEEEEEESCSSCCEEEEETTEEC------CSSEEEEEEEETTEEEEEEEESSCCGGGCE
T ss_pred             CCEEEeCC--cceEEeCCCcEEEEEEEeCCCCCeEEEEECCeec------CCCCceEEEecCCCceEEEEEeecCcccCe
Confidence            56787777  7899999999999999987     9999963321      1112211  1    1368999999999999


Q ss_pred             eEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        82 ~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      .|+|.+.+..+. .+..+.|.|..++.....+.                             ...+..|+.+.|.|.+.+
T Consensus        74 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~g  124 (182)
T 1rhf_A           74 RYWCQVEDGGETEISQPVWLTVEGVPFFTVEPK-----------------------------DLAVPPNAPFQLSCEAVG  124 (182)
T ss_dssp             EEEEEESSCTTCEECCCEEEEEECSCEEEECCC-----------------------------CEEECTTCCEEEEEEEEC
T ss_pred             EEEEEEEcCCCcEEEEEEEEEEecCCeEEecCc-----------------------------ceEecCCCEEEEEeEecC
Confidence            999999988665 45667777776544333222                             237888999999999999


Q ss_pred             CCCc-eEEEEECCccCCCC--CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEE
Q psy3045         161 NPVK-TISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKL  215 (267)
Q Consensus       161 ~p~~-~~~W~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v  215 (267)
                      .|.+ .+.|++++..+...  ....|.|.++  +|+|.|+|.|.|..|.... ++.|.|
T Consensus       125 ~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          125 PPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             SSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            9988 99999999888654  5677888877  5899999999999876643 555544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.3e-24  Score=160.67  Aligned_cols=172  Identities=24%  Similarity=0.396  Sum_probs=129.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcce------eccccCCceEEEEeeEEEEeecccCCCee
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR------KVAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +.|...+  ..+.+.+|+++.|.|.+.+     +.|++++.....      ........++......|.|.+++..|+|.
T Consensus         2 ~~v~~~~--~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            2 GSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (212)
T ss_dssp             CEEECSC--SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             ceEEecC--CCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeE
Confidence            3455555  7899999999999999987     999997443110      01123455666667899999999999999


Q ss_pred             EEEEEEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE-eC
Q psy3045          83 YLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YE  159 (267)
Q Consensus        83 Y~C~~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~-~~  159 (267)
                      |+|.+.+..|.  ....+.|.|..++.....+.                             ...+.+|+.+.|.|. +.
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~~  130 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-----------------------------PSSVTIGNRAVLTCSEHD  130 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC-----------------------------CSEEETTSCEEEEEECSC
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCcccCC-----------------------------ccccCCCCeEEEEEEccc
Confidence            99999998763  45667777776544222111                             116778999999999 78


Q ss_pred             CCCCceEEEEECCc-cCCC----------------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE--EEEEEEe
Q psy3045         160 GNPVKTISWMKDGK-PVPD----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA--SGELKLG  216 (267)
Q Consensus       160 ~~p~~~~~W~~~~~-~~~~----------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v~  216 (267)
                      +.|.+.+.|++++. .+..                .....|.|.++..+|.|.|+|.|.|..|....  .+.|.|.
T Consensus       131 ~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            88999999999998 7753                23568999999999999999999999988744  4444443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.93  E-value=4.2e-26  Score=181.26  Aligned_cols=216  Identities=16%  Similarity=0.244  Sum_probs=140.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR   87 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence            4678999999999999874       99999743322110             01234455542      2589999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.+..+.......|.|...+.  ..+.....                       +....+.+|+.+.|.|
T Consensus        88 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~--~~P~i~~~-----------------------~~~~~~~~g~~v~L~C  142 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMAYWGQGTLVTVSSAST--KGPSVFPL-----------------------APSSKSTSGGTAALGC  142 (344)
T ss_dssp             GGGCEEEEEEETTTTCEECCCEEEEECSSCC--BCCEEEEE-----------------------CCSCTTTSSSEEEEEE
T ss_pred             cccCEEEEEEEecCcceecCcEEEEEecCCC--CCCeEEEc-----------------------cccccccCCCcEEEEE
Confidence            9999999999988544333445666653111  11111100                       0011345799999999


Q ss_pred             EeCCC-CC-ceEEEEECCccCC---------CCC----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe-----
Q psy3045         157 KYEGN-PV-KTISWMKDGKPVP---------DHN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG-----  216 (267)
Q Consensus       157 ~~~~~-p~-~~~~W~~~~~~~~---------~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~-----  216 (267)
                      .+.|. |. +.+.|++++..+.         .+.    .+.|.|..+..+| |.|+|.|.|..+.......+.+.     
T Consensus       143 ~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~  221 (344)
T 1za6_B          143 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKT  221 (344)
T ss_dssp             EEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             EEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccc
Confidence            99887 54 7999999987642         111    1267888887777 99999999987754333332211     


Q ss_pred             ----------------cccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEEcCC
Q psy3045         217 ----------------GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  264 (267)
Q Consensus       217 ----------------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~l~~  264 (267)
                                      ....+|.+...+......+|..+.|.|.+.|+++  +.+.|++||+.+..
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  287 (344)
T 1za6_B          222 HTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  287 (344)
T ss_dssp             -----------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred             cccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence                            1124566554433222335777999999998643  58999999988753

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=1e-24  Score=161.56  Aligned_cols=178  Identities=26%  Similarity=0.396  Sum_probs=129.7

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeec-ccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEA-KVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~-~~~d   79 (267)
                      +..||.|...+  .+..+.+|+++.|.|.+.+     +.|++++.....     .......    ....|.|.++ +..|
T Consensus         3 ~~~~P~~~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~~d   75 (212)
T 2yd6_A            3 GETPPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-----QRFEVIEFDDGSGSVLRIQPLRTPRD   75 (212)
T ss_dssp             -CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-----TTEEEEEEGGGTEEEEEECSCCTTTT
T ss_pred             CCCCCeEEeCc--ceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC-----CceeEEEEcCCCceEEEEeccCCCCC
Confidence            45678999887  7889999999999999987     999996432110     0111111    2357999999 5999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      +|.|+|.+.|..+.....+.|.|...+........                      +...+....+..|+.+.|.|.+.
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~----------------------~~~~~~~~~~~~g~~v~l~C~~~  133 (212)
T 2yd6_A           76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPT----------------------IDMGPQLKVVERTRTATMLCAAS  133 (212)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCE----------------------EEECCCCEEEETTSCEEEEEEEE
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcce----------------------eecCCcceeEecCCCEEEEEEec
Confidence            99999999999888778888888764321111000                      01112334678899999999999


Q ss_pred             CCCCceEEEEECCccCCCC------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEe
Q psy3045         160 GNPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLG  216 (267)
Q Consensus       160 ~~p~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~  216 (267)
                      +.|.+.+.|++++..+...            ....|.|.++..+|.|.|+|.|.|..|.... .+.+.+.
T Consensus       134 g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             CSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            9999999999999887643            1378999999999999999999999887654 3455554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.93  E-value=8.9e-25  Score=176.28  Aligned_cols=163  Identities=69%  Similarity=1.098  Sum_probs=135.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      ....+.+|+++.|.|.+.+     +.|++++.+...........++...++.|.|.+++.+|+|.|+|.+.|..|.....
T Consensus       220 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  299 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE  299 (388)
T ss_dssp             CCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence            3456889999999999887     99999755544444445566666677899999999999999999999999988888


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD  177 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~  177 (267)
                      +.|.|..++.....+                             ....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       300 ~~l~V~~~p~~~~~~-----------------------------~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~  350 (388)
T 2v5m_A          300 TVLTVTAPLSAKIDP-----------------------------PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH  350 (388)
T ss_dssp             EEEEEEEEEEEEEES-----------------------------SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC
T ss_pred             EEEEEeCCCccccCC-----------------------------CcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc
Confidence            888888755433322                             233788899999999999999999999999998854


Q ss_pred             CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       178 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                       ....|.|..+..+|+|.|+|.|.|..|....++.|.|
T Consensus       351 -~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          351 -SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             -CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence             4678999999999999999999999998888877765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=6.5e-25  Score=159.84  Aligned_cols=167  Identities=25%  Similarity=0.370  Sum_probs=124.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeee-cccCcceeccccCCceEEE-----EeeEEEEeecccCCC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFK-FIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~-~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~   80 (267)
                      |+.|...+  .+..+.+|+++.|.|.+.+      +.|++ ++.  ...   ....++..     ....|.|.+++.+|+
T Consensus         2 p~~v~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~--~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (191)
T 1epf_A            2 VLQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGE--KLS---PNQQRISVVWNDDDSSTLTIYNANIDDA   74 (191)
T ss_dssp             -CCEEEES--SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSC--EEC---CBSSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             ceEEEecC--CCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCc--ccc---CCCCeEEEEECCCCceEEEEccCCcccC
Confidence            45677766  7889999999999999887      99999 422  111   11223322     246899999999999


Q ss_pred             eeEEEEEEcCCC-ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          81 GKYLCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        81 G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      |.|+|.+.+..+ .....+.|.|..++.....+.                             ...+.+|+.+.|.|.+.
T Consensus        75 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~  125 (191)
T 1epf_A           75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT-----------------------------PQEFKEGEDAVIVCDVV  125 (191)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEECCSEEEECCS-----------------------------SEECCTTSCEEECCEEE
T ss_pred             EEEEEEEEcCCCcceEEEEEEEeecCceEecCCC-----------------------------cEeecCCCeEEEEEEEC
Confidence            999999999874 456666777765444322222                             23678899999999999


Q ss_pred             CCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         160 GNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       160 ~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.|.+.+.|++++..+...        .+..|.|..+..+|+|.|+|.|.|..+.......+.+
T Consensus       126 g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            9999999999999876421        3458999999999999999999998865555555544

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=8.3e-25  Score=159.37  Aligned_cols=170  Identities=26%  Similarity=0.374  Sum_probs=130.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+|.|...+  .++.+.+|+++.|.|.+.+     +.|++++....     ....++..  .+..|.|.+++..|+|.|
T Consensus         5 ~~~P~i~~~~--~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (192)
T 2iep_A            5 PKAPVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIK-----LFDTRYSIRENGQLLTILSVEDSDDGIY   77 (192)
T ss_dssp             CEEEEESSCC--CEEEEETTSCEEEECCEEEESCCEEEEEETTEECC-----TTCTTEEEEGGGTEEEESSCCGGGCEEE
T ss_pred             CCCceeecCc--cceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcc-----ccCccEEEcCCccEEEEcCCCcccCeEE
Confidence            3468888777  7889999999999999976     99999632111     11233332  335799999999999999


Q ss_pred             EEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          84 LCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        84 ~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      +|.+.+..+. ......|.|...+.....+.                             ...+..|+.+.|.|.+.+.|
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~g~p  128 (192)
T 2iep_A           78 CCTANNGVGGAVESCGALQVKMKPKITRPPI-----------------------------NVKIIEGLKAVLPCTTMGNP  128 (192)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEEEEEECCC-----------------------------CEEEETTSCEEECCEEEEES
T ss_pred             EEEEEcCCCceeEeEEEEEEEeCCccccCCc-----------------------------ceEEeCCCcEEEEEEEeccC
Confidence            9999998877 45666777776544333222                             23678899999999999999


Q ss_pred             CceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEe
Q psy3045         163 VKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLG  216 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~  216 (267)
                      .+.+.|++++..+...      ....|.|..+..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       129 ~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          129 KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             CCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            8999999999887643      345799999999999999999999987663 34666664

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.93  E-value=4.7e-24  Score=164.91  Aligned_cols=174  Identities=24%  Similarity=0.356  Sum_probs=133.3

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+|.+...+. ....+.+|+.+.|.|.+.+     +.|++++....  ...............|.|.+++.+|+|.|+|
T Consensus        96 ~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  172 (284)
T 2rik_A           96 QEPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTC  172 (284)
T ss_dssp             ECCCEEEECCC-SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECC--CSSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             cCCCcccccCC-CceEecCCceEEEEEEEeeeCCCEEEEEECCEECc--CCCcEEEEEcCCEEEEEECCCCcccCEEEEE
Confidence            34666655442 4677899999999999987     99999633211  1101111111234689999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .+.|..|.....+.|.|..++.....+..                             ..+..|+.+.|.|.+.+.|.+.
T Consensus       173 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~-----------------------------~~~~~g~~v~l~C~~~g~p~~~  223 (284)
T 2rik_A          173 EAHNAAGSASSSTSLKVKEPPVFRKKPHP-----------------------------VETLKGADVHLECELQGTPPFQ  223 (284)
T ss_dssp             EEECSSCEEEEEEEEEEECCCBCCSCCCC-----------------------------EEECTTCCEEEEEECBSSSCCE
T ss_pred             EEEcCCCceeEEEEEEEecCCcceeCCCc-----------------------------ceecCCCeEEEEEEEEecCCCE
Confidence            99999988888888888876654444332                             2678899999999999999999


Q ss_pred             EEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         166 ISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       166 ~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|++++..+.....         ..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       224 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            999999988764432         578899999999999999999999988888777764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.92  E-value=4.8e-24  Score=160.94  Aligned_cols=184  Identities=23%  Similarity=0.352  Sum_probs=131.1

Q ss_pred             ccccCCCcccCCCC--ceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC-CceEEEEeeEEEEeecccCC
Q psy3045           8 PVGFKAPTFSSVSD--IIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus         8 ~~~~~~P~~~~~~~--~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d   79 (267)
                      .+...+|.|...+.  ...+.+.+|+++.|.|.+.+     +.|++++....  ..... .........+|.|.+++..|
T Consensus         6 ~v~~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d   83 (241)
T 3grw_A            6 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR--GEHRIGGIKLRHQQWSLVMESVVPSD   83 (241)
T ss_dssp             -----CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECC--GGGSTTCCEEEGGGTEEEECSCCGGG
T ss_pred             CccCCCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccC--CCCcccceeeeccceEEEEEeCCccc
Confidence            34556787765532  25789999999999999987     99999643221  11111 12233345689999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      +|.|+|.+.+..+.......|.|......  .+                      ......+....+..|+.+.|.|.+.
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~--~~----------------------~~~~~~~~~~~~~~g~~v~L~C~~~  139 (241)
T 3grw_A           84 RGNYTCVVENKFGSIRQTYTLDVLERSPH--RP----------------------ILQAGLPANQTAVLGSDVEFHCKVY  139 (241)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCCCC--CC----------------------EEEECTTCSEECCTTCCEEEEEEEE
T ss_pred             CEEEEEEEeecCCceEEEEEEEEeccCCC--Cc----------------------eeecCCCccceecCCCEEEEEEEEe
Confidence            99999999998888777778877653211  00                      0011112334678899999999999


Q ss_pred             CCCCceEEEEE----CCccCCCCC-----------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         160 GNPVKTISWMK----DGKPVPDHN-----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       160 ~~p~~~~~W~~----~~~~~~~~~-----------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      +.|.+.+.|++    ++..+....                 ...|.|..+..+|+|.|+|.|.|..|....++.|.|..
T Consensus       140 ~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          140 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             CSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             cCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence            99999999999    787765432                 24699999999999999999999999888888887764

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.92  E-value=7e-25  Score=160.79  Aligned_cols=157  Identities=20%  Similarity=0.244  Sum_probs=111.5

Q ss_pred             eEEecCCCeEEEEEEe---cc-----eeeeecccCcceeccc-----------cCCceEE----EEeeEEEEeecccCCC
Q psy3045          24 RFKKPGGESFALLCEA---QE-----NMWFKFIEGSSRKVAV-----------PLNDRVK----QVSGTLIIKEAKVEDS   80 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~---~~-----~~W~~~~~~~~~~~~~-----------~~~~~~~----~~~~~l~i~~~~~~d~   80 (267)
                      ++++..|++++|.|.+   .+     +.|+|++.........           ....++.    .....|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            5688999999999964   33     9999975433221110           1111121    1235799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |.|+|.+.|..|.....+.|.|..++.....+.                             ...+.+|+.+.|.|.+.|
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~-----------------------------~~~v~~g~~~~l~C~~~G  132 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE-----------------------------RSQFPDFSVLTVTCTVNA  132 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEE-----------------------------ECCSSCSCCEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecce-----------------------------eEEEcCCCEEEEEEEcCC
Confidence            999999999998888888888876554332222                             226778999999999999


Q ss_pred             CCCceEEEEECCccCCC----------CCCCe---EEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         161 NPVKTISWMKDGKPVPD----------HNEPV---FRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~----------~~~~~---l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .|.|.+.|++++..+..          ..+..   +.+.++..+|+|.|+|.|.|..|+++.
T Consensus       133 ~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          133 FPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            99999999987654321          12233   344688999999999999999998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=4.2e-24  Score=155.19  Aligned_cols=171  Identities=22%  Similarity=0.384  Sum_probs=127.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|...+  .+..+.+|+++.|.|.+.+     +.|++++....    .....++.. .+++|.|.+++.+|+|.|+|.
T Consensus         2 ~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   75 (189)
T 2v5t_A            2 MLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT----TISDNRFAMLANNNLQILNINKSDEGIYRCE   75 (189)
T ss_dssp             CCEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEC-----C----BCCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred             CceeeccC--CCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccce----eccCCeEEEecCCCEEEeeCCHhHCcEEEEE
Confidence            57788777  7889999999999999987     99999643221    111233322 345799999999999999999


Q ss_pred             EEcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          87 VNNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        87 ~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      +.+..+..  ...+.+.|..++.........                           ...+..|+.+.|.|.+.+.|.+
T Consensus        76 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~---------------------------~~~~~~g~~v~l~C~~~g~p~~  128 (189)
T 2v5t_A           76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSF---------------------------NATAERGEEMTFSCRASGSPEP  128 (189)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEEECSCCEE---------------------------EEETTSCCCEEEECEEEEESCC
T ss_pred             EEEcCCCceEEEEEEEEecCCCCcccccccc---------------------------cccccCCCcEEEEEEEccCCCC
Confidence            99887553  344555555544332222211                           2256779999999999999999


Q ss_pred             eEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         165 TISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       165 ~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.|++++..+...       ....|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus       129 ~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          129 AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999887643       35679999999999999999999999888887777765

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.92  E-value=1e-24  Score=179.66  Aligned_cols=216  Identities=17%  Similarity=0.266  Sum_probs=141.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (457)
T 1hzh_H            8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (457)
T ss_dssp             CCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCC
Confidence            4678999999999999864       99998643321110             11234555532      2489999999


Q ss_pred             cCCCeeEEEEEEcCCC------------ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceE
Q psy3045          77 VEDSGKYLCVVNNSVG------------GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ  144 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  144 (267)
                      .+|+|.|+|.+.+..+            .......|.|.....  ..+....                      . +...
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~----------------------~-~~~~  142 (457)
T 1hzh_H           88 SADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAST--KGPSVFP----------------------L-APSS  142 (457)
T ss_dssp             GGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCC--BCCEEEE----------------------E-CCCS
T ss_pred             cccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCC--CCCeEEe----------------------c-Cccc
Confidence            9999999999998764            112334555553110  1111110                      0 1111


Q ss_pred             EEecCCCEEEEeEeCCC-CC-ceEEEEECCccCCC--------CCC-----CeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         145 TIDFGRPAQFTCKYEGN-PV-KTISWMKDGKPVPD--------HNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~--------~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+.+|+.+.|.|.+.+. |. +.+.|++++..+..        .++     ..|.|..+..+| |.|+|.|.|..+....
T Consensus       143 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~  221 (457)
T 1hzh_H          143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  221 (457)
T ss_dssp             CCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEE
T ss_pred             cccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcce
Confidence            35679999999999887 64 79999999865421        111     268888888888 9999999998766444


Q ss_pred             EEEEEEecc--------------cCCCee-ecCCceeE-EecCCcEEEEEEeecCCCC----cEEEEECCEEcCC
Q psy3045         210 SGELKLGGR--------------FDPPVI-KESFSDET-LNPGPNYYFKCIASGNPTP----EISWYLDGKKLVN  264 (267)
Q Consensus       210 ~~~l~v~~~--------------~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~~----~i~W~~~~~~l~~  264 (267)
                      ...+.+...              ..+|.+ ...+.... +.+|+.+.|.|.+.|.|++    .|.|+|+|+.+..
T Consensus       222 ~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~  296 (457)
T 1hzh_H          222 DKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN  296 (457)
T ss_dssp             EEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECC
T ss_pred             eEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccc
Confidence            443332210              124444 33333222 5679999999999998653    9999999988753

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.92  E-value=3.6e-24  Score=159.32  Aligned_cols=178  Identities=24%  Similarity=0.365  Sum_probs=130.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..+.|...+  .+..+.+|+++.|.|.+.+     +.|++++....      ..     .+..|.|.+++..|+|.|+|.
T Consensus        17 ~~~~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~------~~-----~~~~L~i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           17 RGSKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP------NG-----NTSELIFNAVHVKDAGFYVCR   83 (218)
T ss_dssp             --CCEEECC--CCEEEETTSBEEEECEETTTTSSEEEEEETTEECT------TC-----CSSEEEETTCCGGGCEEEEEE
T ss_pred             CCCEEEECC--CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECC------CC-----CCCEEEEccCChhhCeEeEEE
Confidence            457888887  7899999999999999988     99999632111      11     245899999999999999999


Q ss_pred             EEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          87 VNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        87 ~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      +.+..+.. +..+.|.|...+.........              ....++.+...+....+..|+.+.|.|.+.+.|.+.
T Consensus        84 ~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~--------------~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~  149 (218)
T 3k0w_A           84 VNNNFTFEFSQWSQLDVCDIPESFQRSVDG--------------VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH  149 (218)
T ss_dssp             EECTTCCEECCCEEEEEECCCGGGCTTCCS--------------BCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCE
T ss_pred             EEcCCCCceeeEEEEEEEccCccccccccc--------------ccCCCceEEECCCceeecCCCcEEEEEEecccCCCe
Confidence            99987753 555677776543211000000              000111122234445788999999999999999999


Q ss_pred             EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCC-ceEEEEEEEe
Q psy3045         166 ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLG  216 (267)
Q Consensus       166 ~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~  216 (267)
                      +.|++++..+.......|.|..+..+|+|.|+|.|.|..+. ....+.|.|.
T Consensus       150 v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          150 YQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            99999999998888889999999999999999999998776 3335556654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.92  E-value=2.6e-25  Score=175.19  Aligned_cols=228  Identities=14%  Similarity=0.223  Sum_probs=137.5

Q ss_pred             ccCCCcccCCCCceeEEecCC--CeEEEEEEecc-------eeeeecccCcceecc---ccCCceEEEEeeEEEEeeccc
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGG--ESFALLCEAQE-------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKV   77 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g--~~v~l~C~~~~-------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~   77 (267)
                      ...+|.+...+  .......|  +++.|.|.+.+       +.|++++........   .....+.....+.|.|.....
T Consensus         4 ~~~~P~v~~~~--~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~   81 (323)
T 2wqr_A            4 DFTPPTVKILQ--SSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW   81 (323)
T ss_dssp             CCCCCCCEEEE--ECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHH
T ss_pred             CCCCCEEEEeC--CChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHc
Confidence            34567777665  33333344  69999999865       899996432211100   000011122335688888888


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      .|+|.|+|.+.|..+.....+.+.+.   .....+..                      ....+....+.+|+.+.|.|.
T Consensus        82 ~d~g~Y~C~a~n~~~~~~~~~~~~~~---~~~~~p~v----------------------~~~~p~~~~v~~G~~v~L~C~  136 (323)
T 2wqr_A           82 LSDRTYTCQVTYQGHTFEDSTKKCAD---SNPRGVSA----------------------YLSRPSPFDLFIRKSPTITCL  136 (323)
T ss_dssp             HTTCCEEEEEEETTEEEEEEECCCCC---SSGGGCEE----------------------EECCCCHHHHHTSSCCEEEEE
T ss_pred             CCCCcEEEEEEeCCCCcceeeecCCC---CCCCCCEE----------------------EEcCCCHHHhccCCeEEEEEE
Confidence            89999999999876543322211000   00000100                      011122224677999999999


Q ss_pred             eCCC-CCc---eEEEEECC-ccCCCC--------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe-cc
Q psy3045         158 YEGN-PVK---TISWMKDG-KPVPDH--------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG-GR  218 (267)
Q Consensus       158 ~~~~-p~~---~~~W~~~~-~~~~~~--------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~-~~  218 (267)
                      +.+. |.+   .+.|++++ ..+...        +     .+.|.|..+..+|+|.|+|.|.|..........+.+. ..
T Consensus       137 ~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~  216 (323)
T 2wqr_A          137 VVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGP  216 (323)
T ss_dssp             EEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSC
T ss_pred             EeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCC
Confidence            9876 455   89999965 443321        1     1268899999999999999999986443333333221 12


Q ss_pred             cCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcCC
Q psy3045         219 FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  264 (267)
Q Consensus       219 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~~  264 (267)
                      ..+|.+...+.......|+.+.|.|.+.|. |++ .|.|++||+.|..
T Consensus       217 ~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~  264 (323)
T 2wqr_A          217 RAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD  264 (323)
T ss_dssp             CBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCC
Confidence            246665543322222349999999999984 443 7999999998864

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=2.6e-23  Score=172.18  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=86.2

Q ss_pred             EecCCCEEEEeEeCCCCC---ceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         146 IDFGRPAQFTCKYEGNPV---KTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~p~---~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      +.+|+.+.|.|.+.+.++   +.+.|  ++..+...              ..+.|.|..+..+|.|.|+|.|.|..+...
T Consensus       259 ~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          259 LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             hccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence            467999999999988754   69999  44433211              123588999999999999999999988765


Q ss_pred             EEEEEEEecccCCCeeecCCce-eEEecCCcEEEEEEeecCCC--CcEEEEECCEEcCCC
Q psy3045         209 ASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVNA  265 (267)
Q Consensus       209 ~~~~l~v~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~l~~~  265 (267)
                      ....+.+.....+|.+...+.. ..+.+|+.+.|.|.+.|+++  +.|.|+|||+.|..+
T Consensus       337 ~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          337 LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             eEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            5555543222356776654433 34678999999999998744  499999999988654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=9.4e-25  Score=179.31  Aligned_cols=225  Identities=15%  Similarity=0.237  Sum_probs=137.7

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCcceec-cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      .+.+|+.+.|.|.+.+       +.|++++....... ............+.|.|.++...| |.|+|.+.|..+.....
T Consensus       134 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~  212 (444)
T 1igt_B          134 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  212 (444)
T ss_dssp             SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEE
T ss_pred             cCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceE
Confidence            3579999999999865       89999743311100 000011222334679999999999 99999999998875443


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEe--ecCCCcccccCCceEE-EecCCCEEEEeEeCCCC----CceEEEEE
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY--EISPPLAAGVEPTVQT-IDFGRPAQFTCKYEGNP----VKTISWMK  170 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~~~W~~  170 (267)
                      ..+.+..........            ..|..  ...++......+.... +.+|+.+.|.|.+.|.+    .+.+.|++
T Consensus       213 ~~i~~~~~~~~~~~~------------~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k  280 (444)
T 1igt_B          213 KKIEPRGPTIKPCPP------------CKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV  280 (444)
T ss_dssp             EECCCCCCSCCCCCC------------CSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE
T ss_pred             EEeccCCCCcccCCc------------cccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE
Confidence            333221100000000            00000  0001111011111112 47799999999998873    36999999


Q ss_pred             CCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE-ecccCCCeeecCCceeEEec
Q psy3045         171 DGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL-GGRFDPPVIKESFSDETLNP  235 (267)
Q Consensus       171 ~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v-~~~~~~p~~~~~~~~~~~~~  235 (267)
                      ++..+....              .+.|.|..+..+|.|.|+|.|.|..+.......+.+ .....+|.+...+.......
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~  360 (444)
T 1igt_B          281 NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMT  360 (444)
T ss_dssp             TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTT
T ss_pred             CCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHcc
Confidence            997764321              236889999999999999999999877644444432 12235677665443222223


Q ss_pred             CCcEEEEEEeec-CCCC-cEEEEECCEEcC
Q psy3045         236 GPNYYFKCIASG-NPTP-EISWYLDGKKLV  263 (267)
Q Consensus       236 g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~  263 (267)
                      +..+.|.|.+.| .|++ .|.|+++|+.+.
T Consensus       361 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          361 KKQVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCeEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            445999999998 4555 899999999874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=1.8e-24  Score=159.99  Aligned_cols=183  Identities=28%  Similarity=0.429  Sum_probs=124.7

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEee-----EEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSG-----TLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G   81 (267)
                      .||.|...+  .+..+.+|+++.|.|.+.+     +.|++++.............+....++     .|.|.+++..|+|
T Consensus         8 ~pp~i~~~p--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            8 FPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEEEECC--CCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             CCcceecCC--CceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            368888877  7899999999999999986     999996432211111111122222222     3445667899999


Q ss_pred             eEEEEEEcCCCcc-EEEEEEEEEeccc-cccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-
Q psy3045          82 KYLCVVNNSVGGE-SVETVLTVTAPLA-AGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-  158 (267)
Q Consensus        82 ~Y~C~~~~~~~~~-~~~~~l~V~~~~~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-  158 (267)
                      .|+|.+.+..+.. +..+.|.|...+. ....                             +....+..|+.+.|.|.+ 
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~-----------------------------~~~~~~~~g~~~~l~C~~~  136 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQN-----------------------------PSDVMVAVGEPAVMECQPP  136 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECSSCSBC-----------------------------CCCEEEETTSCEEEECBCC
T ss_pred             EEEEEEECCCCceeecceEEEEEeccccceeC-----------------------------CCceEecCCCcEEEEEecC
Confidence            9999999987653 4455666654322 1111                             223377889999999998 


Q ss_pred             CCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEecccCCCeeecCC
Q psy3045         159 EGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESF  228 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~  228 (267)
                      .+.|.+.+.|++++..+...      ....|.|..+..+|.|.|+|.|.|..|.... .+.|.|.   .+|.+...|
T Consensus       137 ~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~---~~P~~~~~P  210 (212)
T 2v9r_A          137 RGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL---ERPSFVKAA  210 (212)
T ss_dssp             CEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE---C--------
T ss_pred             CCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE---eCchHhhhc
Confidence            78899999999999887643      2368999999999999999999999877554 3667765   466655443

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.92  E-value=5.4e-24  Score=171.58  Aligned_cols=160  Identities=27%  Similarity=0.402  Sum_probs=128.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      ....+.+|+++.|.|.+.+     +.|++++...     +....+....++.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus       213 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  287 (384)
T 3kld_A          213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKP-----IARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK  287 (384)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTCCC-----CCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CceEecCCCcEEEEEEEeecCCCcEEEEeCCCcc-----ccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            5678899999999999988     9999852211     11122222335689999999999999999999999988888


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD  177 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~  177 (267)
                      ..|.|...+.+...+.                             ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..
T Consensus       288 ~~l~v~~~P~~~~~~~-----------------------------~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~  338 (384)
T 3kld_A          288 GQLTFYAQPNWVQIIN-----------------------------DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT  338 (384)
T ss_dssp             EEEEEEEEEEEEECCC-----------------------------CEEECTTCCEEEECEEEEESCCEEEEEETTEECCC
T ss_pred             EEEEEecCCccccCCC-----------------------------ceEecCCCCEEEEeECCccCCCeEEEEECCEECCC
Confidence            8888877554333222                             23788899999999999999999999999988754


Q ss_pred             CC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         178 HN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       178 ~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..     ...|.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       339 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          339 RDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             BTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            32     4689999999999999999999999998888888774

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.92  E-value=1.9e-23  Score=156.52  Aligned_cols=180  Identities=23%  Similarity=0.360  Sum_probs=131.8

Q ss_pred             CCCcccCCCCc--eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCC-ceEEEEeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDI--IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLN-DRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~--~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .+|.|...+..  ....+.+|+++.|.|.+.+     +.|++++....  ...... ......+.+|.|.+++..|+|.|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   91 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNY   91 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECC--GGGSTTCCEEEGGGTEEEECSCCGGGCEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCcccc--ccccccceeeecCcceEEEecCCcccCEEE
Confidence            35777554421  5688999999999999987     99999633221  111111 12333445899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      +|.+.+..+.......|.|...+...                        +......+....+..|+.+.|.|.+.+.|.
T Consensus        92 ~C~~~n~~~~~~~~~~l~V~~~~~~~------------------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  147 (231)
T 3ojm_B           92 TCVVENEYGSINHTYHLDVVERSRHR------------------------PILQAGLPANASTVVGGDVEFVCKVYSDAQ  147 (231)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCC------------------------CEECTTCSCCEEEETTCCEEEECCEECSSC
T ss_pred             EEEEecccCcccccEEEEEEcCCCCC------------------------CceeeccCCceEEEeCCcEEEEEEEecCCC
Confidence            99999988887777788877532210                        011111123347888999999999999999


Q ss_pred             ceEEEEE----CCccCCCC----------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         164 KTISWMK----DGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       164 ~~~~W~~----~~~~~~~~----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      +.+.|++    ++..+...                ....|.|..+..+|+|.|+|.|.|..|....++.+.|..
T Consensus       148 p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             CEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence            9999999    77665322                235799999999999999999999999888888888864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=2.2e-24  Score=177.09  Aligned_cols=216  Identities=15%  Similarity=0.229  Sum_probs=141.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (444)
T 1igt_B            8 GGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLK   87 (444)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCC
Confidence            4678999999999999964       99998643322110             01123455432      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCcc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEE
Q psy3045          77 VEDSGKYLCVVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQ  153 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~  153 (267)
                      .+|+|.|+|.+.+..+..   ...+.|.|....  ...+....                      ..+. ..+.+|+.+.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~----------------------~~~~-~~~~~g~~v~  142 (444)
T 1igt_B           88 SEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK--TTAPSVYP----------------------LAPV-CGDTTGSSVT  142 (444)
T ss_dssp             GGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC--CBCCEEEE----------------------ECCC-SSCCCSSCEE
T ss_pred             HHHCEEEEEEEecCCcccccccCcEEEEecCCC--CCCCceeE----------------------eccc-ccCCCCCcEE
Confidence            999999999999875431   123455554311  01111110                      0010 1236799999


Q ss_pred             EEeEeCCC-CCc-eEEEEECCccCCC--------CC----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe---
Q psy3045         154 FTCKYEGN-PVK-TISWMKDGKPVPD--------HN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG---  216 (267)
Q Consensus       154 l~C~~~~~-p~~-~~~W~~~~~~~~~--------~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~---  216 (267)
                      |.|.+.+. |.+ .+.|++++..+..        ..    .+.|.|..+..+| |.|+|.|.|..+.......+.+.   
T Consensus       143 L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~  221 (444)
T 1igt_B          143 LGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  221 (444)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCS
T ss_pred             EEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCC
Confidence            99999885 665 9999998876421        01    1357888888888 99999999998875444444321   


Q ss_pred             ------------cccCCCee-ecCCceeE-EecCCcEEEEEEeecCC---C-CcEEEEECCEEcCC
Q psy3045         217 ------------GRFDPPVI-KESFSDET-LNPGPNYYFKCIASGNP---T-PEISWYLDGKKLVN  264 (267)
Q Consensus       217 ------------~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p---~-~~i~W~~~~~~l~~  264 (267)
                                  ....+|.+ ...+.... +.+|+.+.|.|.+.|.+   + +.|.|+++|..+..
T Consensus       222 ~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~  287 (444)
T 1igt_B          222 IKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHT  287 (444)
T ss_dssp             CCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSS
T ss_pred             cccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccC
Confidence                        11124554 33333222 57899999999999884   3 59999999988754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.92  E-value=2.8e-25  Score=194.09  Aligned_cols=218  Identities=22%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecccc------CCceEEEEeeEEEEeecccCCC
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVP------LNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      |.+...+. ....+.+|++++|.|.+.+       +.|++++..........      ...........|.|.+++.+|+
T Consensus       224 ~~v~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  302 (772)
T 3v2a_R          224 YDVVLSPS-HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ  302 (772)
T ss_dssp             EEEEEECC-SCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTC
T ss_pred             ceeeeCCC-CceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCC
Confidence            34444331 3478999999999999975       89999643321111110      0012233556899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |.|+|.+.+..+..+..+.|.|...+.....+..                          .....+.+|+.+.|.|.+.+
T Consensus       303 G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~--------------------------~~~~~v~~G~~v~l~C~~~~  356 (772)
T 3v2a_R          303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM--------------------------ESLVEATVGERVRIPAKYLG  356 (772)
T ss_dssp             SEEEEEEECSSCEEEEEEEEEEECCCC-----------------------------------------------------
T ss_pred             eEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCC--------------------------CCcEEEcCCCcEEEEEEEee
Confidence            9999999998887778888888775543222110                          11226778999999999999


Q ss_pred             CCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecC---CceeEE
Q psy3045         161 NPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES---FSDETL  233 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~---~~~~~~  233 (267)
                      .|.+.+.|+++|..+...    ....|.|..+..+|+|.|+|.|.|..+....+..+.+.+. .+|.+...   .....+
T Consensus       357 ~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~-~~P~~~~~~~~~~~~~~  435 (772)
T 3v2a_R          357 YPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSY  435 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe-cCCcccccccCCCcccc
Confidence            999999999999887643    2378999999999999999999998876554444444332 45554322   111247


Q ss_pred             ecCCcEEEEEEeecCCCCc-EEEEECC
Q psy3045         234 NPGPNYYFKCIASGNPTPE-ISWYLDG  259 (267)
Q Consensus       234 ~~g~~~~l~C~~~~~p~~~-i~W~~~~  259 (267)
                      .+|+.+.|.|.+.|.|.|. +.|+++|
T Consensus       436 ~~g~~~~l~C~~~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          436 QYGTTQTLTCTVYAIPPPHHIHWYWQL  462 (772)
T ss_dssp             ---------------------------
T ss_pred             CCCCcEEEEeEeccCCCCcEEEEEEcC
Confidence            8899999999999999996 9999974

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=1.2e-23  Score=155.65  Aligned_cols=165  Identities=22%  Similarity=0.329  Sum_probs=123.6

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCc--------------ceec-cccCCceEEE-------EeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGS--------------SRKV-AVPLNDRVKQ-------VSGTLI   71 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~--------------~~~~-~~~~~~~~~~-------~~~~l~   71 (267)
                      ..+.+.+|+++.|.|.+.+         +.|++...+.              .... ...+..|+..       .+.+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            6789999999999999874         8999853221              0000 1122344443       246899


Q ss_pred             EeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        72 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      |.+++.+|+|.|+|.+.+..+.....+.|.|...+........                             ..+..|+.
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~-----------------------------~~~~~g~~  138 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVD-----------------------------GSEEIGND  138 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEE-----------------------------SCCBTTCC
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeee-----------------------------cceecCCc
Confidence            9999999999999999998887888888888876543222111                             14667999


Q ss_pred             EEEEeEe-CCCCCceEEEEECCc--cCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         152 AQFTCKY-EGNPVKTISWMKDGK--PVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       152 v~l~C~~-~~~p~~~~~W~~~~~--~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.|.|.+ .+.|.+.+.|++++.  .+..     .....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       139 v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             EEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             EEEEecCCCCCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            9999999 788999999999543  3321     245699999999999999999999999888777766654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.91  E-value=2.4e-24  Score=158.90  Aligned_cols=168  Identities=25%  Similarity=0.429  Sum_probs=126.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcce------eccccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR------KVAVPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ++.|...+  ..+.+.+|+++.|.|.+.+     +.|++++.....      ........++......|.|.+++.+|+|
T Consensus         4 ~~~i~~~~--~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            4 SVTVHSSE--PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG   81 (209)
T ss_dssp             CCEEECSC--SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCS
T ss_pred             eEEEEcCC--CceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCc
Confidence            45666665  7889999999999999987     999997443110      0112334556656689999999999999


Q ss_pred             eEEEEEEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-
Q psy3045          82 KYLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-  158 (267)
Q Consensus        82 ~Y~C~~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-  158 (267)
                      .|+|.+.+..+.  .+..+.|.|..++........                             ..+..|+.+.|.|.+ 
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-----------------------------~~~~~g~~~~l~C~~~  132 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-----------------------------SSATIGNRAVLTCSEQ  132 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCB-----------------------------SEEETTSCEEECCCCC
T ss_pred             EEEEEEecCCCCccceEEEEEEEecCCcCCCcccc-----------------------------cceecCCEEEEEEeCC
Confidence            999999988653  345566666655443222111                             157789999999996 


Q ss_pred             CCCCCceEEEEECCccCCCC----------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         159 EGNPVKTISWMKDGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      .+.|.+.+.|++++..+...                ....|.|.++..+|.|.|+|.|.|..|....+.
T Consensus       133 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             CCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence            78899999999999877542                346899999999999999999999998874433

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.91  E-value=1.8e-24  Score=159.09  Aligned_cols=167  Identities=18%  Similarity=0.256  Sum_probs=118.9

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ...|.|...+  ....+.+|++++|.|.+.+      +.|++++...      .      .....|.|.+++.+|+|.|+
T Consensus         5 ~p~p~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l------~------~~~~~L~i~~v~~~D~G~Y~   70 (204)
T 3sgj_C            5 LPKAVVFLEP--QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI------S------SQASSYFIDAATVDDSGEYR   70 (204)
T ss_dssp             -CBCEEEEES--CCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEE------S------CCSSEEEESSCCGGGCEEEE
T ss_pred             CCCCeEEEcC--CCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEc------c------cCccEEEEecccccCCEEEE
Confidence            3457777776  5688999999999999987      8999963211      1      11268999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV  163 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~  163 (267)
                      |.+.+.  ..+..+.|.|...+.....+                              ...+.+|+.+.|.|.+.+. |.
T Consensus        71 C~a~n~--~~s~~~~l~V~~~p~~~~~~------------------------------~~~v~~G~~v~L~C~~~~~~p~  118 (204)
T 3sgj_C           71 CQTQLS--TLSDPVQLEVHIGWLLLQAP------------------------------RWVFKEEDPIHLRCHSWKNTAL  118 (204)
T ss_dssp             EEETTS--BCCCCEEEEEECSSEEEECS------------------------------CSEEETTCCEEEEEEEGGGCCC
T ss_pred             EEeCCC--cccccEEEEEecCceEecCC------------------------------ceeEeCCCcEEEEEEecCCCCC
Confidence            999874  34445566666543211111                              1267789999999999765 56


Q ss_pred             ceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCC-CCceEEEEEEEecccCCCe
Q psy3045         164 KTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPV  223 (267)
Q Consensus       164 ~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~p~  223 (267)
                      +.+.|++++..+.. .....|.|.++..+|+|.|+|.|.|.. +.....+.|.|.....+|.
T Consensus       119 ~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          119 HKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             EEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred             ceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence            89999999987642 346789999999999999999999943 3344466677765444443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=155.99  Aligned_cols=170  Identities=12%  Similarity=0.159  Sum_probs=116.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      +|.|...   ....+.+|+.+.|.|.+..      +.|++++...  ...  ...++..    ...+|.|.+++.+|+|.
T Consensus         3 ~p~~~~~---~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l--~~~--~~~~~~~~~~~g~~~L~I~~v~~~D~G~   75 (207)
T 3rbs_A            3 DPFTKSE---LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI--FEG--PKYKMHIDRNTGIIEMFMEKLQDEDEGT   75 (207)
T ss_dssp             ---CCEE---EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEE--CSS--SSCEEEECTTTCEEEEEESCCCGGGCEE
T ss_pred             CCeeecC---CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEEC--ccC--CCEEEEEeCCCCEEEEEECCCChhhCEE
Confidence            4667654   4789999999999999864      9999964321  111  1112221    22379999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccc---------------cCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEe
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAG---------------VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTID  147 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~---------------~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~  147 (267)
                      |+|.+.|  |.......+.+.......               ..+...                       ... ...+.
T Consensus        76 Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-----------------------~~~-~~~v~  129 (207)
T 3rbs_A           76 YTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-----------------------EYL-SWEVT  129 (207)
T ss_dssp             EEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEE-----------------------EEE-EEEEE
T ss_pred             EEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceE-----------------------ecC-CcEEc
Confidence            9999998  444444333322100000               011111                       001 23678


Q ss_pred             cCCCEEEEeEeCCC-CCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         148 FGRPAQFTCKYEGN-PVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +|+.+.|.|.+.|. |.|.+.|+|++.++..+       ....|.|.++..+|+|.|+|.|.|..|....++.|..
T Consensus       130 ~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            89999999999998 89999999999887542       1246999999999999999999999998887776653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=8.3e-24  Score=157.13  Aligned_cols=172  Identities=27%  Similarity=0.426  Sum_probs=124.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeE----EEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGT----LIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~G   81 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....  .......++...++.    |.|.+++..|+|
T Consensus         7 ~~~P~i~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   82 (217)
T 2vr9_A            7 YQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS--TNEKKSHRVQFKDGALFFYRTMQGKKEQDGG   82 (217)
T ss_dssp             CCCCEEEECC--CCEEECTTSCEEECCEEECSSCCEEEEEETTEECC--CSSSSSSEEECTTSCEEESSCCBSSSCBCCE
T ss_pred             cCCCEEecCC--CceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCcc--CCCccceeEEecCCceEEEEEeccCCcccCc
Confidence            4578998887  7899999999999999987     99999633221  111112333322222    368889999999


Q ss_pred             eEEEEEEcCCCcc-EEEEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe-
Q psy3045          82 KYLCVVNNSVGGE-SVETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY-  158 (267)
Q Consensus        82 ~Y~C~~~~~~~~~-~~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-  158 (267)
                      .|+|.+.+..+.. .....|.|... +.....                             +....+..|+.+.|.|.+ 
T Consensus        83 ~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~-----------------------------~~~~~~~~g~~v~l~C~~~  133 (217)
T 2vr9_A           83 EYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-----------------------------PKDTRVAKGETALLECGPP  133 (217)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECCSCSBC-----------------------------CCCEEECTTSCEEECCBCC
T ss_pred             eEEEEEecCCCccccccceEEEEEeCCCcEEC-----------------------------CCccEEcCCCeEEEEEECC
Confidence            9999999987754 33455555542 222222                             222367889999999998 


Q ss_pred             CCCCCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         159 EGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       159 ~~~p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .+.|.+.+.|++++..+...              ....|.|.++..+|.|.|+|.|.|..|....+..+.+
T Consensus       134 ~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             CEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence            78899999999999877521              2457999999999999999999999987766544444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=8.5e-24  Score=151.86  Aligned_cols=161  Identities=18%  Similarity=0.254  Sum_probs=117.8

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+      +.|++++..            +...+..|.|.+++.+|+|.|
T Consensus         4 ~~~~p~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~------------~~~~~~~L~i~~~~~~d~G~Y   69 (175)
T 1fnl_A            4 DLPKAVVFLEP--QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL------------ISSQASSYFIDAATVNDSGEY   69 (175)
T ss_dssp             CCCCCEEEEES--CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEE------------EESSCSEEEESSCCGGGCEEE
T ss_pred             CCCCCEEEEcC--CceeeeCCCcEEEEeeCCCCCCCcceEEEECCEE------------ccCCceEEEEeCCCcccCEEE
Confidence            34568888877  6678999999999999987      789996321            112356899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      +|.+.+..+  +..+.|.|...+....                              .....+.+|+.+.|.|.+.+.++
T Consensus        70 ~C~~~n~~~--s~~~~l~V~~~~~~~~------------------------------~~~~~~~~g~~~~l~C~~~~~~~  117 (175)
T 1fnl_A           70 RCQTNLSTL--SDPVQLEVHIGWLLLQ------------------------------APRWVFKEEDPIHLRCHSWKNTA  117 (175)
T ss_dssp             EEECSSSCC--CCCEEEEEECSSEEEE------------------------------CSCSEEETTCCEEEEEEECTTCC
T ss_pred             EEEeeCCcc--cccEEEEEeCCCceee------------------------------CCCceecCCCCEEEEEEcCCCCC
Confidence            999987544  3445566653211000                              01126778999999999988765


Q ss_pred             -ceEEEEECCccCCCC-CCCeEEeccCCCCCCeEEEEEEEcCCCC-ceEEEEEEEe
Q psy3045         164 -KTISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLG  216 (267)
Q Consensus       164 -~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~  216 (267)
                       +.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..+. ......|.|.
T Consensus       118 ~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          118 LHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             CEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence             599999999887432 4678999999999999999999996543 2234445443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.91  E-value=6.5e-23  Score=166.17  Aligned_cols=170  Identities=22%  Similarity=0.362  Sum_probs=132.5

Q ss_pred             CCcccCCC-CceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVS-DIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~-~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|.... ......+.+|+++.|.|.+.+     +.|++++....     ....++...+..|.|.+++.+|+|.|+|.
T Consensus       219 ~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  293 (404)
T 3p3y_A          219 TPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP-----SDKAKFENFNKALRITNVSEEDSGEYFCL  293 (404)
T ss_dssp             CCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCC-----TTTEEEEGGGTEEEESSCCGGGCEEEEEE
T ss_pred             CCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECC-----CCcccccccCceEEEccCCHhHCEEEEEE
Confidence            44444332 124678999999999999988     99999643221     11122333456899999999999999999


Q ss_pred             EEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceE
Q psy3045          87 VNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI  166 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~  166 (267)
                      +.|..|.....+.|.|..++.....+.                             ...+.+|+.+.|.|.+.|.|.+.+
T Consensus       294 a~n~~g~~~~~~~l~V~~~p~~~~~~~-----------------------------~~~v~~g~~~~l~C~~~g~p~p~v  344 (404)
T 3p3y_A          294 ASNKMGSIRHTISVRVKAAPYWLDEPK-----------------------------NLILAPGEDGRLVCRANGNPKPTV  344 (404)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEEEECCC-----------------------------CEEECTTCCEEEECEEEEESCCEE
T ss_pred             EEeCCCcEEEEEEEEEeCCCeeeccCC-----------------------------cceeecCCcEEEEEEccccCCCce
Confidence            999999888888888887654333322                             237888999999999999999999


Q ss_pred             EEEECCccCCCCC--------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         167 SWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       167 ~W~~~~~~~~~~~--------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .|++++..+....        +..|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus       345 ~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          345 QWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            9999998875432        4689999999999999999999999988888887764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=2.1e-23  Score=168.56  Aligned_cols=161  Identities=24%  Similarity=0.415  Sum_probs=125.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+.+|+.+.|.|.+.+     +.|++++.....    ....++..    ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus       220 ~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  295 (395)
T 1bih_A          220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG----NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK  295 (395)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCC----CTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCC----CCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCC
Confidence            5678999999999999987     999996432111    11122221    1237999999999999999999999888


Q ss_pred             cEE-EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECC
Q psy3045          94 ESV-ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG  172 (267)
Q Consensus        94 ~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~  172 (267)
                      ... .+.|.|..+|.+...+..                            ...+..|+.+.|.|.+.|.|.+.+.|++++
T Consensus       296 ~~~~~~~l~V~~~P~~~~~~~~----------------------------~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g  347 (395)
T 1bih_A          296 PQKHSLKLTVVSAPKYEQKPEK----------------------------VIVVKQGQDVTIPCKVTGLPAPNVVWSHNA  347 (395)
T ss_dssp             CEEEEEEEEEEEEEEEEECCCS----------------------------EEEECTTSCEEEECEEEEESCCCCEEEETT
T ss_pred             ceEEEEEEEEEcCCccccCCCc----------------------------ceEecCCCeEEEEEEECcccCCeeEEEECC
Confidence            554 888888876554333221                            136788999999999999999999999999


Q ss_pred             ccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         173 KPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       173 ~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ..+...    ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       348 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          348 KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            988643    2358999999999999999999999998887777765

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.90  E-value=5.2e-23  Score=159.52  Aligned_cols=173  Identities=24%  Similarity=0.400  Sum_probs=129.1

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++.....    ....++. ..++.|.|.+++..|+|.|+
T Consensus        98 ~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  171 (291)
T 1qz1_A           98 FQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL----KKDVRFIVLSNNYLQIRGIKKTDEGTYR  171 (291)
T ss_dssp             ECCSEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEETTSCSST----TCCTTEEECTTSCEEETTCCGGGCEEEE
T ss_pred             eccccccCCC--CcccccCCCeEEEEEEeccCCCCEEEEEECCEEccc----CCCceEEEccCCcEEEccCccccCeEEE
Confidence            3467777666  6778999999999999987     999996432211    1112222 23458999999999999999


Q ss_pred             EEEEcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          85 CVVNNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        85 C~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |.+.+..+..  ...+.+.|..++........                           ....+..|+.+.|.|.+.+.|
T Consensus       172 C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~---------------------------~~~~~~~g~~v~l~C~~~g~p  224 (291)
T 1qz1_A          172 CEGRILARGEINFKDIQVIVNVPPTVQARQSI---------------------------VNATANLGQSVTLVCDADGFP  224 (291)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE---------------------------EEEETTSCCCEEEEEEEEEES
T ss_pred             EEEEecCCCceeeEEEEEEEecCCcccccccc---------------------------cccccccCceEEEEEEEEEeC
Confidence            9999876443  34556666554443222211                           122677899999999999999


Q ss_pred             CceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         163 VKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.+.|++++..+....           ...|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       225 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            99999999998876432           4679999999999999999999999988878877775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=1.1e-23  Score=151.45  Aligned_cols=159  Identities=22%  Similarity=0.275  Sum_probs=117.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.|...+  ....+.+|+++.|.|.+.+      +.|++++...            ...+..|.|.+++.+|+|.|+|
T Consensus         3 ~~P~i~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~------------~~~~~~L~i~~v~~~d~G~Y~C   68 (176)
T 1f2q_A            3 QKPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS------------EETNSSLNIVNAKFEDSGEYKC   68 (176)
T ss_dssp             -CCCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEETTEEC------------SCCSSEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEcCC--CCcceecCCcEEEEEeCCCCCCcceEEEEECCeEC------------CCCceEEEEeccceecCEEEEE
Confidence            468888877  6788999999999999987      8899963211            1135689999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC-CCCCc
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVK  164 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~  164 (267)
                      .+.+..+.  ..+.|.|...+....                              .....+.+|+.+.|.|.+. +.|.+
T Consensus        69 ~~~~~~~s--~~~~l~V~~~~~~~~------------------------------~~~~~~~~g~~~~l~C~~~~~~p~~  116 (176)
T 1f2q_A           69 QHQQVNES--EPVYLEVFSDWLLLQ------------------------------ASAEVVMEGQPLFLRCHGWRNWDVY  116 (176)
T ss_dssp             ECTTSSCC--CCEEEEEECSSEEEE------------------------------ESCSEEETTSCEEEEEEEGGGCCEE
T ss_pred             EcCCcccc--ccEEEEEeCcceeec------------------------------CCcceeeCCCCEEEEEEecCCCCce
Confidence            99876543  344555552211000                              0112677899999999995 56778


Q ss_pred             eEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCC-ceEEEEEEEe
Q psy3045         165 TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLG  216 (267)
Q Consensus       165 ~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~  216 (267)
                      .+.|+++|..+.. .....|.|.++..+|+|.|+|.|.|..+. ....+.+.|.
T Consensus       117 ~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          117 KVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             EEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            9999999988753 35689999999999999999999996433 2234556554

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.90  E-value=4.4e-23  Score=166.09  Aligned_cols=166  Identities=26%  Similarity=0.418  Sum_probs=131.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +|.+..... ....+.+|+++.|.|.+.+     +.|++++....        .+.......|.|.+++.+|+|.|+|.+
T Consensus       206 ~P~~~~~~~-~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~L~i~~~~~~d~G~Y~C~a  276 (382)
T 1cs6_A          206 APSIKAKFP-ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT--------SKWLSSEPLLHIQNVDFEDEGTYECEA  276 (382)
T ss_dssp             EEEEEECCC-SEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS--------CCCSBSSSEEEECSCCGGGCEEEEEEE
T ss_pred             CCceeccCC-CceEEeCCCeEEEEEEEccCCCCEEEEEECCcccc--------cEEecCCcEEEEccCChhhCEEEEEEE
Confidence            455554321 5788999999999999987     99999643211        122234568999999999999999999


Q ss_pred             EcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEE
Q psy3045          88 NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS  167 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~  167 (267)
                      .|..|.......|.|..++.....+.                             ...+..|+.+.|.|.+.|.|.+.+.
T Consensus       277 ~n~~g~~~~~~~l~V~~~p~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~g~p~p~v~  327 (382)
T 1cs6_A          277 ENIKGRDTYQGRIIIHAQPDWLDVIT-----------------------------DTEADIGSDLRWSCVASGKPRPAVR  327 (382)
T ss_dssp             EETTEEEEEEEEEEEEEEEEEEECCC-----------------------------CEEEETTCCEEEECEEEEESCCEEE
T ss_pred             EcCCCeEEEEEEEEEecCCCcccCCC-----------------------------ccEEcCCCeEEEEEEeeeecCCEEE
Confidence            99998888888888886554333322                             2367889999999999999999999


Q ss_pred             EEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         168 WMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       168 W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |+++|..+....     ...|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       328 W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          328 WLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            999999886543     4689999999999999999999999988888887764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=2.8e-25  Score=181.90  Aligned_cols=222  Identities=12%  Similarity=0.136  Sum_probs=137.6

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCcceec-cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      .+.+|+.++|.|.+.+       +.|++++....... ............+.|.|.++..+| |.|+|.+.|..+.....
T Consensus       130 ~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~  208 (434)
T 1igy_B          130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVD  208 (434)
T ss_dssp             CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEE
T ss_pred             ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccce
Confidence            4579999999999965       89999643211100 000011222234679999999889 99999999998875444


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE-EecCCCEEEEeEeCCCC----CceEEEEECC
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT-IDFGRPAQFTCKYEGNP----VKTISWMKDG  172 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~~~W~~~~  172 (267)
                      ..+.+..... ....              |..... +......+.... +.+|+.+.|.|.+.+.+    .+.+.|++++
T Consensus       209 ~~~~~~~~~~-~v~~--------------~~~~~~-p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~  272 (434)
T 1igy_B          209 KKIVPRDCGC-KPCI--------------CTVPEV-SSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDN  272 (434)
T ss_dssp             EECCCCCCCC-CCCC--------------CCCSSS-CCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSS
T ss_pred             eeccCCCCCC-cccc--------------CCCCcC-cEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCC
Confidence            3333221000 0000              000000 000011111111 67899999999999884    3589999998


Q ss_pred             ccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe-cccCCCeeecCCceeEEecCC
Q psy3045         173 KPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG-GRFDPPVIKESFSDETLNPGP  237 (267)
Q Consensus       173 ~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~  237 (267)
                      ..+...              ..+.|.|..+..+|.|.|+|.|.|..+.......+.+. ....+|.+...+......+|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~  352 (434)
T 1igy_B          273 VEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKD  352 (434)
T ss_dssp             CCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSS
T ss_pred             cccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCC
Confidence            776421              12468899889999999999999988765333333221 122466665544333344677


Q ss_pred             cEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         238 NYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       238 ~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      .+.|.|.+.|.+++  .|.|+|||+.+..
T Consensus       353 ~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  381 (434)
T 1igy_B          353 KVSLTCMITDFFPEDITVEWQSDGQAPEN  381 (434)
T ss_dssp             EEEEEEEEEEEBCSCEEEEEEETTSCCSC
T ss_pred             cEEEEEEEEeeECCCeEEEEEECCEecCC
Confidence            89999999986443  8999999988753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.90  E-value=2.3e-22  Score=154.11  Aligned_cols=188  Identities=21%  Similarity=0.318  Sum_probs=116.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEec---c-----eeeeecccCcceec------------cccCCceEEEE------e
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQ---E-----NMWFKFIEGSSRKV------------AVPLNDRVKQV------S   67 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~---~-----~~W~~~~~~~~~~~------------~~~~~~~~~~~------~   67 (267)
                      +.+...+  ..+.+.+|+++.|.|.+.   +     +.|+++........            ...+..|+...      +
T Consensus         6 ~~v~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   83 (268)
T 3mj6_A            6 PGLTVSS--PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND   83 (268)
T ss_dssp             ------C--CEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTB
T ss_pred             cccccCC--CceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCE
Confidence            4555555  678999999999999987   3     99999643221110            01122444332      2


Q ss_pred             eEEEEeecccCCCeeEEEEEEcCCCccE--EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVNNSVGGES--VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      .+|.|.+++.+|+|.|+|.+.+..+...  ..+.|.|.  +.   .                             +....
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~---~-----------------------------p~~~~  129 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE---E-----------------------------PRDLR  129 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC---C-----------------------------CSEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc---C-----------------------------CCccc
Confidence            6899999999999999999998765543  33444443  11   1                             12237


Q ss_pred             EecCCCEEEEeEe---CCCCCceEEEEECCccC-C--------------------------------CCCCCeEEeccCC
Q psy3045         146 IDFGRPAQFTCKY---EGNPVKTISWMKDGKPV-P--------------------------------DHNEPVFRIDSVR  189 (267)
Q Consensus       146 ~~~g~~v~l~C~~---~~~p~~~~~W~~~~~~~-~--------------------------------~~~~~~l~i~~~~  189 (267)
                      +.+|+.+.|.|.+   .+.|.+.+.|++++... .                                ......|.|.++.
T Consensus       130 v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~  209 (268)
T 3mj6_A          130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVK  209 (268)
T ss_dssp             EETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             cccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCC
Confidence            8889999999999   67788999999943211 0                                0235689999999


Q ss_pred             CCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcE
Q psy3045         190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY  239 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~  239 (267)
                      .+|+|.|+|.|.|..+....++.|.|..  .+|.+...+....+..|+.+
T Consensus       210 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~--~~p~~~~~p~~~~~~~~q~~  257 (268)
T 3mj6_A          210 ESDQGIYTCSIYVGKLESRKTIVLHVVQ--DEFQRTISPTPPTDKGQQGI  257 (268)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC--C-------------------
T ss_pred             hhhCeEEEEEEEcCCceEEEEEEEEEEc--CCCeeeeCCCCCCCCcceec
Confidence            9999999999999888777777777743  66777777766666655544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=1.3e-24  Score=177.91  Aligned_cols=215  Identities=15%  Similarity=0.237  Sum_probs=140.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (434)
T 1igy_B            7 GAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLT   86 (434)
T ss_dssp             CCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBC
T ss_pred             CCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCC
Confidence            5678999999999999874       99999643322110             01123455432      3479999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.+..+.......|.|.....  ..+....                      ..+ ...+.+|+.+.|.|
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~----------------------~~~-~~~~~~G~~v~L~C  141 (434)
T 1igy_B           87 SDDSAVYYCVREGEVPYWGQGTTVTVSSAKT--TPPSVYP----------------------LAP-GSAAQTNSMVTLGC  141 (434)
T ss_dssp             GGGCSEECCCCSSSSCCCCCCEECEECCSCC--BCCCEEE----------------------ECC-CCCCCCTTEEEEEE
T ss_pred             hHHCEEEEEEEEccccccCCceEEEEccCCC--CCCeEEE----------------------cCC-ccccCCCCcEEEEE
Confidence            9999999999988543333445566653110  1111110                      001 11346799999999


Q ss_pred             EeCCC-CCc-eEEEEECCccCCC--------CC----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec-----
Q psy3045         157 KYEGN-PVK-TISWMKDGKPVPD--------HN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG-----  217 (267)
Q Consensus       157 ~~~~~-p~~-~~~W~~~~~~~~~--------~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~-----  217 (267)
                      .+.+. |.+ .+.|++++..+..        ..    .+.|.|..+..+| |.|+|.|.|..+.......+.+..     
T Consensus       142 ~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v  220 (434)
T 1igy_B          142 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKP  220 (434)
T ss_dssp             EEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCC
T ss_pred             EEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCcc
Confidence            99886 665 9999999875320        11    1358888888888 999999999988755444443220     


Q ss_pred             ----ccCCCee-ecCCceeE-EecCCcEEEEEEeecCC----CCcEEEEECCEEcC
Q psy3045         218 ----RFDPPVI-KESFSDET-LNPGPNYYFKCIASGNP----TPEISWYLDGKKLV  263 (267)
Q Consensus       218 ----~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~l~  263 (267)
                          ....|.+ ...+.... +.+|+.+.|.|.+.|.+    .+.|.|+++|..+.
T Consensus       221 ~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~  276 (434)
T 1igy_B          221 CICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVH  276 (434)
T ss_dssp             CCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBC
T ss_pred             ccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccC
Confidence                0000333 33332222 78899999999999884    35899999998764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=148.77  Aligned_cols=169  Identities=22%  Similarity=0.365  Sum_probs=119.0

Q ss_pred             eeEEecCCCeEEEEEE-ecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          23 IRFKKPGGESFALLCE-AQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~-~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      ..+.+.+|+++.|.|. +.+      +.|++++....  ............+.+|.|.+++.+|+|.|+|.+.+..+...
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF--ITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCB--CCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             ceEEEECCCCEEEeccccccCCCceEEEEEECCceee--eeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            6889999999999999 444      89999643221  11111111222346899999999999999999998765533


Q ss_pred             E---EEEEEEEeccccc-cCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEEC
Q psy3045          96 V---ETVLTVTAPLAAG-VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD  171 (267)
Q Consensus        96 ~---~~~l~V~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~  171 (267)
                      .   ...+.+....... ..+...                       .......+..|+.+.|.|.+.+.|.+.+.|+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~-----------------------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~  150 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIV-----------------------VQFKDVYALMGQNVTLECFALGNPVPDIRWRKV  150 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEE-----------------------EECCCEEEETTCCEEEEEEEEEESCCEEEEEET
T ss_pred             hhhcccceeeccccccCCCCCceE-----------------------ecCCceEEecCCcEEEEEEccCCCCCceEEEeC
Confidence            2   2222222111100 001000                       111234788899999999999999999999999


Q ss_pred             CccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         172 GKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       172 ~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +..+...     ....|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus       151 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          151 LEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            9887642     45789999999999999999999999888777777764

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.90  E-value=1.4e-22  Score=151.55  Aligned_cols=163  Identities=18%  Similarity=0.210  Sum_probs=108.5

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcce-----------eccccCCceEEE-------EeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSR-----------KVAVPLNDRVKQ-------VSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~-----------~~~~~~~~~~~~-------~~~~l~i~~~~   76 (267)
                      .++.+.+|++|+|.|.+.+        +.|+|++.....           .....+..|+..       .+.+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            5688999999999999865        899996432110           011112233322       24689999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.|..+.....+.+.+.  +........                             ..+.+|+.+.|.|
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~-----------------------------~~~~~g~~v~l~c  140 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVA--ALGSDLHVD-----------------------------VKGYKDGGIHLEC  140 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE--BCCCCCEEE-----------------------------EEEEETTEEEEEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeec--cceecccce-----------------------------eeeccCCceeeEE
Confidence            999999999999987665544444333  222222211                             2667799999999


Q ss_pred             EeCC-CCCceEEEEECCcc-CCCC-------CCC---eEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         157 KYEG-NPVKTISWMKDGKP-VPDH-------NEP---VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       157 ~~~~-~p~~~~~W~~~~~~-~~~~-------~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.+ .|.|.+.|++++.. +...       ...   .+.+..++.+|.|.|+|.|.|..+....+..+.|.
T Consensus       141 ~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          141 RSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             EeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            9987 48999999996544 3321       111   23344567889999999999999988888877764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.90  E-value=6.4e-23  Score=166.97  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=120.4

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ....+.+|+++.|.|.+.+      +.|++++.......    ......+......+|.|.+++.+|+|.|+|.|.|.  
T Consensus       235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~--  312 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--  312 (423)
T ss_dssp             TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE--
T ss_pred             CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC--
Confidence            4778999999999999986      89999644221110    00012222344568999999999999999999887  


Q ss_pred             ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECC
Q psy3045          93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG  172 (267)
Q Consensus        93 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~  172 (267)
                       .+..+.|.|...+.+...+..                           ....+.+|+.+.|.|.+.+.|.+.+.|+++|
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~---------------------------~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g  364 (423)
T 3qs7_E          313 -PSQSALVTIVEKGFINATNSS---------------------------EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR  364 (423)
T ss_dssp             -EEEEEEEEEESSCEEEEC------------------------------CEECCCTTCCCCEEEEEEEESCCEEEEEETT
T ss_pred             -CCceEEEEEEeCCcceEcCCC---------------------------ccEEecCCCeEEEEEEEEEcCCCeEEEEECC
Confidence             667777888765443222211                           1226778999999999999999999999999


Q ss_pred             ccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc
Q psy3045         173 KPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR  218 (267)
Q Consensus       173 ~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  218 (267)
                      ..+....     ...+.......+|+|.|+|.|.|..|....++.|.+...
T Consensus       365 ~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~  415 (423)
T 3qs7_E          365 KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG  415 (423)
T ss_dssp             EEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred             EECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence            9886543     334444667789999999999999998888888887653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.90  E-value=1.3e-22  Score=153.91  Aligned_cols=160  Identities=18%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCccee------------------------ccccCCceEEEE---e
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRK------------------------VAVPLNDRVKQV---S   67 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~------------------------~~~~~~~~~~~~---~   67 (267)
                      ..+.+.+|+++.|.|.+.+        +.|++++......                        ....+..|+...   +
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   89 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAA   89 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTS
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCc
Confidence            5789999999999999873        9999974322000                        001233344332   2


Q ss_pred             eEEEEeecccCCCeeEEEEEEcCCCcc-----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCc
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT  142 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~  142 (267)
                      .+|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...+....                         .....+.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~-------------------------~~~~~~~  144 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN-------------------------VHVSTAE  144 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSC-------------------------CEECCCS
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCe-------------------------EEEecCc
Confidence            589999999999999999999877643     4566777765321100                         0011123


Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC------------------------------CCCeEEeccCCCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------------------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------------------------------~~~~l~i~~~~~~d  192 (267)
                      ...+.+|+.+.|.|.+.+.|.|.+.|++++..+...                              ....|.|.++..+|
T Consensus       145 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D  224 (250)
T 2fbo_J          145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD  224 (250)
T ss_dssp             EEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred             eEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence            346778999999999999998899999998766431                              23689999999999


Q ss_pred             CeEEEEEEEcCCCCc
Q psy3045         193 KGMYQCVIRNEQESA  207 (267)
Q Consensus       193 ~g~y~C~~~~~~~~~  207 (267)
                      +|.|+|.|.|..|..
T Consensus       225 ~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          225 AGRVWCELATGQGEL  239 (250)
T ss_dssp             CEEEEEEEESSSSGG
T ss_pred             CEEEEEEecCCcccc
Confidence            999999999966543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=1.6e-22  Score=146.32  Aligned_cols=157  Identities=19%  Similarity=0.248  Sum_probs=116.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEEE-------eeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQV-------SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~~-------~~~l~i~~~~~~d~G~   82 (267)
                      +.+.+.+|+++.|.|.+.+     +.|++++.......        ......++...       ..+|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            4678999999999999877     99999643211100        01123333322       3469999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |+|.+.+..+    .+.|.|.....                                 +....+.+|+.+.|.|.+.+.|
T Consensus        83 Y~C~~~~~~~----~~~l~V~~~~~---------------------------------~~~~~v~~g~~~~l~C~~~~~p  125 (184)
T 2ny1_B           83 YICEVEDQKE----EVQLLVFGLTA---------------------------------NSDTHLLQGQSLTLTLESPPGS  125 (184)
T ss_dssp             EEEEETTEEE----EEEEEEEEEEE---------------------------------SSCSEEETTCCEEEEEECCTTC
T ss_pred             EEEEEEcCCC----cEEEEEEEecC---------------------------------CCCceeecCCCEEEEEEcCCCC
Confidence            9999987643    44555543110                                 1112678899999999999999


Q ss_pred             CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         163 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      .+.+.|++++..+. .....|.|.++..+|+|.|+|.|.|..+.......+.|..
T Consensus       126 ~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          126 SPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             CCEEEEECTTSCEE-EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEEeCCCccc-cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence            99999999987653 3568899999999999999999999888777777777764

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.89  E-value=5.9e-23  Score=150.17  Aligned_cols=159  Identities=15%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.|...|  . ..+.+|++|+|.|.+.+    +.|+|++........   .......+..|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 2d3v_A            4 SKATLWAEP--G-SVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ---NPLEPKNKARFSIPSMTEHHAGRYRCYY   77 (196)
T ss_dssp             CBCEEEEES--C-SEEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEE---CCCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCC--C-CcccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccc---cccCCccccEEEeccCChhHCeEEEEEE
Confidence            468888776  3 38899999999999988    999996432211000   0011123568999999999999999999


Q ss_pred             EcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          88 NNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        88 ~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .|..+..  +..+.|.|.....   .+...                       . .....+.+|+.++|.|.+.+.| +.
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~~~---~p~i~-----------------------~-~~~~~v~~G~~v~L~C~~~~~p-~~  129 (196)
T 2d3v_A           78 YSPAGWSEPSDPLELVVTGFYN---KPTLS-----------------------A-LPSPVVTSGENVTLQCGSRLRF-DR  129 (196)
T ss_dssp             EETTEECBCCCCEEEEEECSSC---CCEEE-----------------------C------------CEEEEEESSCC-SE
T ss_pred             eCCCCcCCcCccEEEEecCCCC---CCeEE-----------------------c-cCCccccCCCcEEEEEEcCCCC-CE
Confidence            9876542  4456677765211   01100                       0 0112577899999999999988 89


Q ss_pred             EEEEECCccCCC-----------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         166 ISWMKDGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       166 ~~W~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +.|++++..+..           .....|.|.+++.+|+|.|+|.|.|..
T Consensus       130 ~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          130 FILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             EEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             EEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            999999987631           122689999999999999999999865

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.89  E-value=1.1e-23  Score=173.67  Aligned_cols=232  Identities=19%  Similarity=0.301  Sum_probs=135.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee--ccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK--VAVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      +|.+...+  ....+.+|+++.|.|.+.+       +.|++++......  .............+.|.|.++..+| |.|
T Consensus       132 ~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y  208 (457)
T 1hzh_H          132 GPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  208 (457)
T ss_dssp             CCEEEEEC--CCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCC
T ss_pred             CCeEEecC--ccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceE
Confidence            45544333  2334689999999999876       8999964321110  0000111122234579999999999 999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEee-----cCCCcccccCCceE-EEecCCCEEEEeE
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYE-----ISPPLAAGVEPTVQ-TIDFGRPAQFTCK  157 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~-----~~~~~~~~~~~~~~-~~~~g~~v~l~C~  157 (267)
                      +|.+.|..+.......+.+.....                .+.|.+.     ..++......+... .+.+|+.+.|.|.
T Consensus       209 ~C~a~n~~~~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          209 ICNVNHKPSNTKVDKKAEPKSCDK----------------THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEEEEGGGTEEEEEECCCCCSCS----------------SCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEEEeCCCCcceeEEecccCCCc----------------ccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            999999766544333333221110                0000000     00011101111111 1567999999999


Q ss_pred             eCCCCCc----eEEEEECCccCCCC--------CCCeEEec---cCCCCC---CeEEEEEEEcCCCCceEEEEEEEe-cc
Q psy3045         158 YEGNPVK----TISWMKDGKPVPDH--------NEPVFRID---SVRKED---KGMYQCVIRNEQESAQASGELKLG-GR  218 (267)
Q Consensus       158 ~~~~p~~----~~~W~~~~~~~~~~--------~~~~l~i~---~~~~~d---~g~y~C~~~~~~~~~~~~~~l~v~-~~  218 (267)
                      +.+.+++    .+.|++++..+...        ....+.+.   .+...|   .|.|+|.|.|..+.......+.+. ..
T Consensus       273 ~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~  352 (457)
T 1hzh_H          273 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ  352 (457)
T ss_dssp             EECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCC
T ss_pred             EEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCC
Confidence            9987543    99999999776432        12333332   233445   999999999876554444333320 12


Q ss_pred             cCCCeeecCCce-eEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         219 FDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       219 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      ..+|.+...+.. ..+..|+ +.|.|.+.|.+++  .|.|++||+.+..
T Consensus       353 ~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~  400 (457)
T 1hzh_H          353 PREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENN  400 (457)
T ss_dssp             CBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcc
Confidence            356766654433 2334445 9999999997554  8999999998853

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.89  E-value=3.2e-22  Score=148.58  Aligned_cols=159  Identities=19%  Similarity=0.257  Sum_probs=113.1

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceE--EEEee--EEEEeecccCCCee
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRV--KQVSG--TLIIKEAKVEDSGK   82 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~--~~~~~--~l~i~~~~~~d~G~   82 (267)
                      ..+|.|...|  . ..+.+|++|+|.|.+.+    +.|+|++.......     ...  .....  .|.|.+++.+|+|.
T Consensus         7 ~~~P~i~~~p--~-~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~   78 (218)
T 1uct_A            7 FPMPFISAKS--S-PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI-----GRRLKFWNETDPEFVIDHMDANKAGR   78 (218)
T ss_dssp             SCCCCEEESS--C-SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC-----SEECC----CCCEEEECSCCGGGCEE
T ss_pred             CCCCEEEecC--C-CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccc-----cccCCCCcceeeEEEEcccccccCEE
Confidence            4568888877  3 47899999999999987    99999743221110     111  12334  89999999999999


Q ss_pred             EEEEEEcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          83 YLCVVNNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        83 Y~C~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      |+|.+.+..+..  +..+.|.|.....   .+...                       ..+ ...+.+|+.++|.|...+
T Consensus        79 Y~C~a~n~~~~~~~s~~~~l~V~~~~~---~P~i~-----------------------~~p-~~~v~~G~~v~L~C~~~~  131 (218)
T 1uct_A           79 YQCQYRIGHYRFRYSDTLELVVTGLYG---KPFLS-----------------------ADR-GLVLMPGENISLTCSSAH  131 (218)
T ss_dssp             EEEEEEETTTEEEECCCEEEEEECSSC---CCEEE-----------------------ESS-CSEECTTCCCEEEEECSS
T ss_pred             EEEEEEcCCCceeecCCEEEEEcCccc---CCEEE-----------------------eCC-CCccCCCCCEEEEEeCCC
Confidence            999999976532  3345566654211   01000                       011 126788999999997667


Q ss_pred             CCCceEEEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         161 NPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .+.+.+.|+|+|..+..     .....|.|.+++.+|+|.|+|.|.+..
T Consensus       132 ~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          132 IPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            77889999999987753     346789999999999999999999853

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=6.9e-23  Score=150.06  Aligned_cols=160  Identities=16%  Similarity=0.265  Sum_probs=111.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.|...|  . ..+.+|++++|.|.+.+    +.|+|++.......   ...........|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (198)
T 1ugn_A            4 PKPTLWAEP--G-SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWIT---RIPQELVKKGQFPIPSITWEHTGRYRCYY   77 (198)
T ss_dssp             CCCEEEEES--C-SEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHH---TSCHHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEeccC--C-CcccCCCcEEEEEEecCCCcEEEEEECCccccccc---cccccCCcccEEEECCCCHHHCeEEEEEE
Confidence            468888766  3 48899999999999988    99999643221000   01111123468999999999999999999


Q ss_pred             EcCC-C--ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          88 NNSV-G--GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        88 ~~~~-~--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      .|.. +  ..+..+.|.|...+.   .+...                       . .....+.+|+.+.|.|.+.+. .+
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~~~~---~p~i~-----------------------~-~~~~~v~~G~~v~L~C~~~~~-~~  129 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTGAYI---KPTLS-----------------------A-QPSPVVNSGGNVTLQCDSQVA-FD  129 (198)
T ss_dssp             EETTTEECCCCCCEEEEEECSSC---CCEEE-----------------------E-ESCSEEETTCCEEEEEECSSC-CS
T ss_pred             ECCCCCcccCCccEEEEEccccc---CCccc-----------------------c-CCccccCCCCcEEEEEecCCC-Cc
Confidence            9876 4  235556777765211   01111                       0 011267789999999999888 67


Q ss_pred             eEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         165 TISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       165 ~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+.|++++..+...           ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       130 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          130 GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             EEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            99999999876321           237899999999999999999999865

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.89  E-value=4.6e-22  Score=154.17  Aligned_cols=173  Identities=21%  Similarity=0.375  Sum_probs=127.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.|...+  ....+.+|+++.|.|.+.+     +.|++++.....    ....++. ..+..|.|.+++..|+|.|+|
T Consensus        97 ~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  170 (291)
T 2wim_A           97 QKLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT----ISDNRFAMLANNNLQILNINKSDEGIYRC  170 (291)
T ss_dssp             CCCBCCSCC--CSEEEETTSCEEECCCCBCSSCCEEEEECC----CB----CCCSSEEECTTSCEEETTCCGGGCEEEEE
T ss_pred             CCcceEeCC--CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc----cCCceEEEccCCCEEEEecchhhCEEEEE
Confidence            456676666  6778999999999999987     999996432211    1122222 234579999999999999999


Q ss_pred             EEEcCCCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          86 VVNNSVGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        86 ~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      .+.+..+..  ...+.+.|..++.........                           ...+.+|+.+.|.|.+.+.|.
T Consensus       171 ~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~---------------------------~~~~~~g~~~~l~C~~~g~p~  223 (291)
T 2wim_A          171 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSF---------------------------NATAERGEEMTFSCRASGSPE  223 (291)
T ss_dssp             EEEETTTTEEEEEEEEEEEEBCCCCBCSCSEE---------------------------ECCSSSCCEEEEECBCCCBSC
T ss_pred             EEEECCCCeeEEeeEEEEeccCCccccCcccc---------------------------cceecCCCeEEEEEEeecCCC
Confidence            999887653  344555665554433322211                           125667999999999999999


Q ss_pred             ceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         164 KTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       164 ~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      +.+.|++++..+...       ....|.|.++..+|+|.|+|.|.|..|....++.+.+..
T Consensus       224 p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          224 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             CEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             CeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            999999999887643       356899999999999999999999999988888887753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=1.9e-22  Score=153.10  Aligned_cols=210  Identities=11%  Similarity=0.112  Sum_probs=113.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.|...|   ...+.+|++|+|.|.+..    +.|+|++.......... .......+..|.|.+++.+|+|.|+|.+
T Consensus         6 ~kP~i~~~P---~~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            6 RKPSLLAHP---GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIG-EHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCCEECCBS---CSEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEEC-BCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCCEEEEcC---CCEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceeee-eccCCCceEEEEeecCCcccCEEEEEeE
Confidence            467887766   367899999999999977    99999744321110000 0001124568999999999999999999


Q ss_pred             EcCCC-----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          88 NNSVG-----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        88 ~~~~~-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      .+...     ..+..+.|.|.+...   .+...                       ..+. ..+.+|++++|.|.+.+.+
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~~---~P~l~-----------------------~~p~-~~V~~G~~vtL~C~~~~~~  134 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLYE---KPSLS-----------------------AQPG-PTVLAGESVTLSCSSRSSY  134 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSSC---CCEEE-----------------------CSSC-TTCBTTCEEEEEEECSSCC
T ss_pred             eccCCCccccccCCCEEEecccCCC---CcceE-----------------------ccCC-CccCCCCEEEEEEeCCCCC
Confidence            86432     234556677765211   11110                       0011 1467899999999988764


Q ss_pred             CceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCC---C--ceEEEEEEEecccCCCeeec-
Q psy3045         163 VKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE---S--AQASGELKLGGRFDPPVIKE-  226 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~---~--~~~~~~l~v~~~~~~p~~~~-  226 (267)
                       +.+.|+|+|..+...          ....|.|.+++  |+|.|+|.+.+...   .  ....+.|.|.   .+|.+.. 
T Consensus       135 -~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~---g~p~~~~p  208 (257)
T 1b6u_A          135 -DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVT---GNPSNSWP  208 (257)
T ss_dssp             -SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCB---CCC-----
T ss_pred             -cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEe---ccCCCCCC
Confidence             689999999776421          25689999998  99999999997532   1  1223444444   3444432 


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCcEEEEECC
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDG  259 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~  259 (267)
                      .+.......|..+.|.|.+ |.+.+.|.|..-+
T Consensus       209 ~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          209 SPTEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             ---------------------------------
T ss_pred             CCcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            1222235568899999876 6777889997644

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=7.9e-23  Score=149.49  Aligned_cols=160  Identities=19%  Similarity=0.291  Sum_probs=113.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.|...|  .. .+.+|++|+|.|.+.+    +.|+|++...........   .......|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~i~~~p--~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 3p2t_A            4 PKPTLWAEP--GS-VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPL---EPKNKARFSIPSMTEDYAGRYRCYY   77 (196)
T ss_dssp             CCCEEEEES--CS-EEETTCCEEEEEECCTTCCEEEEEETTSCSCSEEECCC---SSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEccC--CC-cCCCCCcEEEEeeCCCCCCEEEEEECCCCCcccccccc---cCCceEEEEeccCCcccCceEEEEE
Confidence            467888777  44 8899999999999988    999996432211110000   0123468999999999999999999


Q ss_pred             EcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          88 NNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        88 ~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .|..+.  .+..+.|.|.....   .+...                       ..+. ..+.+|+.++|.|.+.+ +++.
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~~~---~p~~~-----------------------~~~~-~~v~~G~~v~L~C~~~~-~~~~  129 (196)
T 3p2t_A           78 RSPVGWSQPSDPLELVMTGAYS---KPTLS-----------------------ALPS-PLVTSGKSVTLLCQSRS-PMDT  129 (196)
T ss_dssp             EETTEEBCCCCCEEEEEECSSC---CCEEE-----------------------EESC-SEECTTCCEEEEEEEEE-EEEE
T ss_pred             eCCCcccCCCccEEEEecCCCC---CCEEE-----------------------eCCc-ceecCCCeEEEEEecCC-CCCE
Confidence            998872  35556666654221   11111                       0011 15778999999999877 4568


Q ss_pred             EEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         166 ISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       166 ~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +.|++++..+...          ....|.|.++..+|+|.|+|.|.|..+
T Consensus       130 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          130 FLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            9999999866422          246799999999999999999999865

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=8.1e-22  Score=155.84  Aligned_cols=180  Identities=23%  Similarity=0.350  Sum_probs=129.1

Q ss_pred             CCcccCCCC--ceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          13 APTFSSVSD--IIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        13 ~P~~~~~~~--~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +|.|.....  .....+.+|+++.|.|.+.+     +.|++++......... ..........+|.|.+++..|+|.|+|
T Consensus       119 ~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C  197 (334)
T 1ry7_B          119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVVPSDRGNYTC  197 (334)
T ss_dssp             CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST-TCCCCCTTTTEEEECSCCGGGCCCEEE
T ss_pred             CCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccc-cceecccceEEEEECCCCcccCEEEEE
Confidence            565553321  13578899999999999987     9999964322111100 011111234589999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .+.|..|.....+.|.|...+..                        ++......+....+..|+.+.|.|.+.+.|.+.
T Consensus       198 ~a~n~~g~~~~~~~l~V~~~~~~------------------------~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~  253 (334)
T 1ry7_B          198 VVENKFGSIRQTYTLDVLERSPH------------------------RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH  253 (334)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCS------------------------SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEE
T ss_pred             EEEeCCCCEEEEEEEEEecCCCC------------------------CCceEecCCCceEEeCCCCEEEEEEEecCCCCe
Confidence            99999888777788888753210                        000011112334788899999999999999999


Q ss_pred             EEEEE----CCccCCCCC------------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         166 ISWMK----DGKPVPDHN------------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       166 ~~W~~----~~~~~~~~~------------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      +.|++    +|..+....                  ...|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       254 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             EEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred             EEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence            99999    666553221                  13799999999999999999999999988888888864

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=147.29  Aligned_cols=175  Identities=25%  Similarity=0.290  Sum_probs=116.3

Q ss_pred             cCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          28 PGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        28 ~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      -.++.+.|.|.+.+      +.|++++..      +....++...    ...|.|.+++.+|+|.|+|.+.+..+.....
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~------i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~   88 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSA------IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT   88 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEE------CCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEE------ccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEE
Confidence            46788888888885      999996322      1122333321    2469999999999999999999987776665


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD  177 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~  177 (267)
                      +.|.|.............  ..  .    -......+......+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        89 ~~l~v~~~~~~~~~~~~~--~~--~----~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~  160 (212)
T 2r15_A           89 VDLSGQAYDEAYAEFQRL--KQ--A----AIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ  160 (212)
T ss_dssp             EEECHHHHHHHHHHHHHH--HH--H----HHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECC
T ss_pred             EEEEEeeccchhhhcccc--Cc--c----cccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECcc
Confidence            555443210000000000  00  0    000000011111223344788999999999999999999999999988765


Q ss_pred             CC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         178 HN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       178 ~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..          ...|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus       161 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             CSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            32          2489999999999999999999999888777777765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.89  E-value=1.7e-22  Score=176.60  Aligned_cols=210  Identities=15%  Similarity=0.184  Sum_probs=109.5

Q ss_pred             eeEEecCC--CeEEEEEEecc----eeeeecccCcceeccccCCc-eEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc-
Q psy3045          23 IRFKKPGG--ESFALLCEAQE----NMWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-   94 (267)
Q Consensus        23 ~~~~v~~g--~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   94 (267)
                      ..+.+.+|  ++++|.|.+.+    +.|+++..+...   ..... ........|.|.+++..|+|.|+|.+.+..... 
T Consensus       134 ~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  210 (772)
T 3v2a_R          134 GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF---VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ  210 (772)
T ss_dssp             EEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEE---CCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEE
T ss_pred             eeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccc---cCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEE
Confidence            56788999  99999999988    999995111111   11111 122234579999999999999999999754322 


Q ss_pred             EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC--CCceEEEEECC
Q psy3045          95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG  172 (267)
Q Consensus        95 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~  172 (267)
                      +....+.+...+..     ...+                     ..+....+.+|+.+.|.|.+.+.  +.+.+.|++++
T Consensus       211 s~~~~~~v~~~~~~-----~v~~---------------------~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~  264 (772)
T 3v2a_R          211 SIMYIVVVVGYRIY-----DVVL---------------------SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS  264 (772)
T ss_dssp             CCEEEEEEECCCEE-----EEEE---------------------ECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC-
T ss_pred             EEEEEEEEecCccc-----eeee---------------------CCCCceEEecCCcEEEEEEEecCCCCceeEEEecCC
Confidence            11123333221110     0000                     01122378889999999999874  46789999988


Q ss_pred             ccCCCC-----------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCC---ceeE
Q psy3045         173 KPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF---SDET  232 (267)
Q Consensus       173 ~~~~~~-----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~---~~~~  232 (267)
                      ..+...                 ....|.|.++..+|+|.|+|.+.|..+.......+.|.   .+|.+...+   ....
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~  341 (772)
T 3v2a_R          265 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH---EKPFVAFGSGMESLVE  341 (772)
T ss_dssp             -------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE---CCCC------------
T ss_pred             ccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe---CCCeeEeccCCCCcEE
Confidence            764321                 23469999999999999999999988876667777775   355444332   3456


Q ss_pred             EecCCcEEEEEEeecCCCCcEEEEECCEEcCC
Q psy3045         233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       233 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~  264 (267)
                      +.+|+.+.|.|.+.++|.+.+.|+++|+.+..
T Consensus       342 v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~  373 (772)
T 3v2a_R          342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLES  373 (772)
T ss_dssp             --------------------------------
T ss_pred             EcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC
Confidence            88999999999999999999999999988764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.89  E-value=8e-22  Score=146.85  Aligned_cols=164  Identities=17%  Similarity=0.329  Sum_probs=112.7

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeeccc-------Cc--ceeccccCCceEEE-------EeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIE-------GS--SRKVAVPLNDRVKQ-------VSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~-------~~--~~~~~~~~~~~~~~-------~~~~l~i~~~~   76 (267)
                      ..+.+.+|+++.|.|.+.+          +.|++++.       +.  .......+..|...       .+.+|.|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            6778999999999999742          89999531       00  00011122344433       23589999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.+ .+.....+.|.|..++...   ...                          ....+..|+.+.|.|
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~---~~~--------------------------~~~~~~~g~~v~L~C  138 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKI---NQR--------------------------ILVVDPVTSEHELTC  138 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCC---EEE--------------------------EEEEETTTTEEEEEE
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEECCCCCC---Cce--------------------------eeeeecCCCcEEEEE
Confidence            9999999999998 5556667778777543311   111                          001466799999999


Q ss_pred             EeCCCCCceEEEEEC-CccCCCC--------CCCeE---EeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         157 KYEGNPVKTISWMKD-GKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       157 ~~~~~p~~~~~W~~~-~~~~~~~--------~~~~l---~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.|.|.+.+.|+++ +..+...        ....+   ....+..+|.|.|+|.|.|..+....+..+.+.
T Consensus       139 ~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          139 QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             EecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            999999999999998 5544321        11111   222345689999999999999988888888775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.89  E-value=4.6e-23  Score=163.93  Aligned_cols=168  Identities=17%  Similarity=0.217  Sum_probs=129.3

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCe-eE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG-KY   83 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y   83 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+     +.|++++.......    ........++|.|.+++..|+| .|
T Consensus       155 ~c~~P~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~~Y  228 (347)
T 2ifg_A          155 SCGVPTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV----MKSGGLPSLGLTLANVTSDLNRKNV  228 (347)
T ss_dssp             TCCCCEEEEEC--CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE----CCCCCSSEEEEEEESCCSTTTTCCE
T ss_pred             cCCCCceeccC--CceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc----ccceecccceEEEeeCChHHCCCeE
Confidence            34578888777  6889999999999999977     99999643221111    1112234568999999999999 99


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      +|.+.+..|.....+.|.|..++.+    ..                             ..+..|+.+.|.|.+.|.|.
T Consensus       229 ~C~a~n~~g~~~~~~~l~V~~~P~i----~~-----------------------------~~~~~g~~v~l~C~~~g~P~  275 (347)
T 2ifg_A          229 TCWAENDVGRAEVSVQVNVSFPASV----QL-----------------------------HTAVEMHHWCIPFSVDGQPA  275 (347)
T ss_dssp             EECCEETTEECCEEECCCCBEEEEE----EE-----------------------------CCCEESSSEEEEEEEEEESC
T ss_pred             EEEEEcCCCCEEEEEEEEEcCCCee----ee-----------------------------ccCccCceEEEEEEeeecCC
Confidence            9999999888777777777654442    00                             03446899999999999999


Q ss_pred             ceEEEEECCccCCCCC----------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         164 KTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       164 ~~~~W~~~~~~~~~~~----------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |.+.|+++|..+....                ...|.|..++.+|+|.|+|.|.|..|....++.+.|.
T Consensus       276 p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             CEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             CcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            9999999998876432                2349999999999999999999999887777666654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=2.6e-22  Score=145.75  Aligned_cols=159  Identities=16%  Similarity=0.200  Sum_probs=112.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.|...|  .. .+.+|++|+|.|.+.+    +.|+|++.......   ........+..|.|.+++.+|+|.|+|.+
T Consensus         3 ~~P~i~~~p--~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   76 (188)
T 1oll_A            3 PKPFIWAEP--HF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDR---PKPPERINKVKFYIPDMNSRMAGQYSCIY   76 (188)
T ss_dssp             CCCEEEEES--CS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEEC---CSSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeec--CC-cCCCCCCEEEEEecCCCCCEEEEEECCCcccccc---cccCCCcceeEEEeCcCCcccCeEEEEEe
Confidence            468888777  34 7999999999999877    89999633211100   01111224568999999999999999999


Q ss_pred             EcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          88 NNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        88 ~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .+..+.  .+..+.|.|.....   .+...                       ..+ ...+.+|+.++|.|.+.+. .+.
T Consensus        77 ~~~~~~~~~s~~~~l~V~~~~~---~p~i~-----------------------~~p-~~~v~~G~~v~L~C~~~~~-~~~  128 (188)
T 1oll_A           77 RVGELWSEPSNLLDLVVTEMYD---TPTLS-----------------------VHP-GPEVISGEKVTFYCRLDTA-TSM  128 (188)
T ss_dssp             EETTEECCCCCCEEEEEESCSC---CCEEE-----------------------EES-CSEEETTCEEEEEEECSSS-CSE
T ss_pred             cCCCCCCCCCCceEEEecccCC---CCeEE-----------------------ECC-CCccccCCEEEEEEEcCCC-CCE
Confidence            876543  24556666654211   11111                       001 1257889999999998764 568


Q ss_pred             EEEEECCccCC-----CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         166 ISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       166 ~~W~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +.|+|++..+.     ......|.|.+++.+|+|.|+|.|.|..
T Consensus       129 ~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          129 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             EEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            99999998764     2456789999999999999999998864

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.88  E-value=4.5e-22  Score=146.73  Aligned_cols=158  Identities=22%  Similarity=0.355  Sum_probs=113.3

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCccee-------------ccccCCceEEE-EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK-------------VAVPLNDRVKQ-VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y   83 (267)
                      .+..+.+|+++.|.|...+     +.|+++.......             ....+..|... .+++|.|.+++.+|+|.|
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEE
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEE
Confidence            4568899999999999766     9999863211110             00112233332 335899999999999999


Q ss_pred             EEEEEcCCC-ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          84 LCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        84 ~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      +|.+.+..+ .....+.|.|...+.   .+...                       ....  .+..|+.+.|.|.+.+.|
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~---~p~i~-----------------------~~~~--~~~~g~~v~l~C~~~~~p  138 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVT---QPFLQ-----------------------VTNT--TVKELDSVTLTCLSNDIG  138 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCC---CCEEE-----------------------ESCS--SCCTTCCEEEEEECSCTT
T ss_pred             EEEEEcccCceeEEEEEEEeccCCC---CCEEe-----------------------cCCc--eEeeCCCEEEEEECCCCC
Confidence            999998853 456666777765322   11111                       0111  167799999999998866


Q ss_pred             CceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         163 VKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                       +.+.|++++..+...       .+..|.|.++..+|+|.|+|.|.|..|....
T Consensus       139 -p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          139 -ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             -CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             -CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence             799999999887643       3478999999999999999999999887543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=1.5e-22  Score=144.63  Aligned_cols=149  Identities=19%  Similarity=0.249  Sum_probs=109.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.+...+  ....+.+|+++.|.|.+.+      +.|++++...      ..      ....+.+.+++.+|+|.|+|
T Consensus         3 p~p~i~~~p--~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~------~~------~~~~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            3 PKAVLKLEP--PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI------PT------HTQPSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             CBCEEEEES--CCSEEETTCEEEEEEESCCCSSSSCEEEEETTEEC------TT------CCSSEEEEECCGGGCEEEEE
T ss_pred             CCCEEEeCC--CCeEEECCCcEEEEEEecCCCCcceEEEEECCeEc------cc------CccceEEEecccccCeEEEE
Confidence            346666666  6678999999999999877      9999963211      11      12346778999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC-CCCCc
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVK  164 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~  164 (267)
                      .+.+...  +..+.|.|...+.....                              ....+.+|+.+.|.|.+. +.|.+
T Consensus        69 ~~~~~~~--s~~~~l~v~~~~~~~~~------------------------------~~~~~~~g~~~~l~C~~~~~~p~~  116 (170)
T 3ry4_A           69 QTGQTSL--SDPVHLTVLFEWLVLQT------------------------------PHLEFQEGETIMLRCHSWKDKPLV  116 (170)
T ss_dssp             EETTSBC--CCCEEEEEECCSEEEEC------------------------------SCSEECTTCCEEEEEEEGGGCCEE
T ss_pred             EEeCCCc--eEeEEEEEECCceEecC------------------------------CCceeecCCeEEEEEECCCCCCCc
Confidence            9986543  33455666543211111                              112677899999999995 55678


Q ss_pred             eEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         165 TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       165 ~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.|++++..+.. .....|.|.++..+|+|.|+|.|.|..+.
T Consensus       117 ~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          117 KVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             EEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             eEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            9999999987643 34678999999999999999999998764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=4.7e-22  Score=149.81  Aligned_cols=185  Identities=15%  Similarity=0.185  Sum_probs=119.8

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..+|.|...|  .. .+.+|++|+|.|.+.+    +.|+|++.......   ........+..|.|.+++.+|+|.|+|.
T Consensus         5 ~~kP~i~~~P--~~-~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   78 (242)
T 1p6f_A            5 LPKPFIWAEP--HF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDR---PKPPERINKVKFYIPDMNSRMAGQYSCI   78 (242)
T ss_dssp             CCCCEEEEES--CS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEEC---CSSCTTCCEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEeeC--CC-ccCCCCcEEEEEeeCCCCcEEEEEECCCcccccc---ccccCCcceeEEEecCCCcccCeEEEEE
Confidence            3468888777  34 8999999999999877    89999633211100   0001112456899999999999999999


Q ss_pred             EEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          87 VNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        87 ~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      +.+..+.  .+..+.|.|.+...   .+...                       ..+ ...+.+|++++|.|.+.+. .+
T Consensus        79 ~~~~~~~s~~S~~~~L~V~~~~~---~P~i~-----------------------~~p-~~~v~~G~~vtL~C~~~~~-~~  130 (242)
T 1p6f_A           79 YRVGELWSEPSNLLDLVVTEMYD---TPTLS-----------------------VHP-GPEVISGEKVTFYCRLDTA-TS  130 (242)
T ss_dssp             EEETTEECCCCCCEEEEEECCSC---CCEEE-----------------------EES-CSEEETTCEEEEEEECTTS-CS
T ss_pred             EecCCccccCCcceEEEeecccC---CCceE-----------------------ccC-CCccCCCCcEEEEEecCCC-CC
Confidence            9876442  34556666664211   11111                       001 1267889999999998765 45


Q ss_pred             eEEEEECCccCC-----CCCCCeEEeccCCCCCCeEEEEEEEcCC---CCceEEEEEEEecccCCCeeecCCc
Q psy3045         165 TISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQ---ESAQASGELKLGGRFDPPVIKESFS  229 (267)
Q Consensus       165 ~~~W~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~p~~~~~~~  229 (267)
                      .+.|+|+|..+.     ......|.|.+++.+|+|.|+|.+.+..   ......+.|.|...+..|.+.....
T Consensus       131 ~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~l~~~~~  203 (242)
T 1p6f_A          131 MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDP  203 (242)
T ss_dssp             EEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC------------
T ss_pred             EEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCCcccCcCC
Confidence            999999998764     3456789999999999999999999864   2334466777777666677766544

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.88  E-value=2.9e-22  Score=147.05  Aligned_cols=147  Identities=16%  Similarity=0.285  Sum_probs=105.4

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ...+.+|+++.|.|.+.+     +.|++..+..       ...+..  ..+..|.|.+++.+|+|.|+|.+.|..+..+.
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP-------LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCC-------CSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCC-------ccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            345569999999999986     9998842211       111221  13457999999999999999999998877777


Q ss_pred             EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC--ceEEEEECCc
Q psy3045          97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV--KTISWMKDGK  173 (267)
Q Consensus        97 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~~~W~~~~~  173 (267)
                      .+.|.|..++....   ..                         +. ..+.+|+.++|.|.+.+. |.  +.+.|++++.
T Consensus        83 ~~~l~V~~~p~~~~---~~-------------------------~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~  133 (202)
T 1vca_A           83 GIQVEIYSFPKDPE---IH-------------------------LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH  133 (202)
T ss_dssp             EEEEEEEBCCSCCE---EE-------------------------ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTE
T ss_pred             EEEEEEEeCCCCCE---eC-------------------------Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCe
Confidence            88888876543111   00                         00 157789999999999876 43  4799999997


Q ss_pred             cCCCC-----------C--CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         174 PVPDH-----------N--EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       174 ~~~~~-----------~--~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+...           .  ...|.|.....+|.|.|+|.|.|..+.
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             EEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            65311           0  133567777788899999999998765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=146.02  Aligned_cols=152  Identities=20%  Similarity=0.322  Sum_probs=111.3

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..+|.|...+  . ..+.+|++++|.|.+.+    +.|++++..            ....+..|.|.+++.+|+|.|+|.
T Consensus         6 ~~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~------------~~~~~~~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            6 LPKPSLQALP--S-SLVPLEKPVTLRCQGPPGVDLYRLEKLSSS------------RYQDQAVLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             BCCCEEEEES--C-SEEETTCCEEEEEECSTTCSEEEEEETTTC------------CEESSSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEeCC--C-ccccCCCcEEEEEeCCCCCCEEEEEECCcc------------ccCcccEEEECcCChhhCceEEEE
Confidence            3568888776  3 38999999999999887    999996332            123456899999999999999999


Q ss_pred             EEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045          87 VNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK  164 (267)
Q Consensus        87 ~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  164 (267)
                      +.|..+.  .+..+.|.|.....   .+...                       ..+ ...+.+|+.+.|.|.+.+.+ +
T Consensus        71 a~n~~g~~~~s~~~~l~V~~~~~---~p~i~-----------------------~~p-~~~v~~G~~v~l~C~~~~~~-~  122 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVATGVFA---KPSLS-----------------------AQP-GPAVSSGGDVTLQCQTRYGF-D  122 (184)
T ss_dssp             EEETTEEBCCCCCEEEEEESSSC---CCEEE-----------------------EEC-CCSSCCTTCEEEEEECSSCC-C
T ss_pred             EEcCCCccCCCCCEEEEecCcCC---CCEEE-----------------------eCC-CceecCCCcEEEEEEcCCCC-c
Confidence            9987653  24455666654211   11111                       001 12466799999999987654 6


Q ss_pred             eEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         165 TISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       165 ~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+.|++++..+...     ....|.|.+++.+|+|.|+|.|.|...
T Consensus       123 ~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          123 QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            99999999877532     245688899999999999999999754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.88  E-value=4e-22  Score=157.35  Aligned_cols=177  Identities=15%  Similarity=0.200  Sum_probs=130.3

Q ss_pred             CCCcccCCCCceeEEecCC---CeEEEEEE-ecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGG---ESFALLCE-AQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g---~~v~l~C~-~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      .+|.+..........+.+|   +.+.|.|. ..+     +.|+++.++...................|.|..+...|+|.
T Consensus       129 ~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  208 (331)
T 3u83_A          129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS  208 (331)
T ss_dssp             BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCE
T ss_pred             cCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCE
Confidence            3555533322367788888   88999998 554     99999644433222222233333344679999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP  162 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  162 (267)
                      |+|.+.|..+..+..+.|.|..++.....+                            .....+..|+.+.|.|.+.+.|
T Consensus       209 Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~----------------------------~~~~~~~~g~~~~l~C~~~g~p  260 (331)
T 3u83_A          209 LACIVNYHMDRFKESLTLNVQYEPEVTIEG----------------------------FDGNWYLQRMDVKLTCKADANP  260 (331)
T ss_dssp             EEEEEEETTEEEEEEEECCEEEEEEEEEEC----------------------------CCSCCBTTCCCEEEEEEEEEES
T ss_pred             EEEEEecCCCcceeeEEEEEecCCeEEEec----------------------------CCCceEeCCCeEEEEEeCcCCC
Confidence            999999998887777888877654322111                            1111467799999999999999


Q ss_pred             Cce-EEEEECCccCCCC---CCCeEEec-cCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         163 VKT-ISWMKDGKPVPDH---NEPVFRID-SVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       163 ~~~-~~W~~~~~~~~~~---~~~~l~i~-~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+. +.|++++..+...   ....|.|. ++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       261 ~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          261 PATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             CCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             CCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence            887 9999999988654   45789999 899999999999999999887777777665

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=4.7e-21  Score=138.53  Aligned_cols=153  Identities=20%  Similarity=0.309  Sum_probs=109.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      ....+.+|+++.|.|.+.+       +.|++++.  ........     .....|.|.  +.+|+|.|+|.+.+.   ..
T Consensus         6 ~~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~--~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~   73 (184)
T 3b5h_A            6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV--VLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PM   73 (184)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCEEEEESSSE--EEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TS
T ss_pred             EEEEEecCCCEEEEEECCCCCCCceEEEEEeCCE--Eeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cC
Confidence            3557899999999999875       89999532  11111111     113355565  688999999999972   23


Q ss_pred             EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC-CceEEEEE---C
Q psy3045          96 VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK---D  171 (267)
Q Consensus        96 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~---~  171 (267)
                      ..+.|.|..+|.....+.                             ...+.+|+.+.|.|.+.+.| .+.+.|++   +
T Consensus        74 ~~~~l~V~~~P~~~~~~~-----------------------------~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~  124 (184)
T 3b5h_A           74 GTANIQLHGPPRVKAVKS-----------------------------SEHINEGETAMLVCKSESVPPVTDWAWYKITDS  124 (184)
T ss_dssp             CEEEEEECCSCCCEESCS-----------------------------EEEECTTSCEEEEEECCCSSCCCEEEEEECCSS
T ss_pred             cEEEEEEecCCceeecCC-----------------------------CcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCC
Confidence            556677765554333332                             22678899999999999998 79999999   4


Q ss_pred             Ccc-CCCC-----------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         172 GKP-VPDH-----------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       172 ~~~-~~~~-----------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.. +...           ....|.|.++. .+|.|.|+|.|.|..|.......|.|.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            443 3221           12479999999 899999999999999988877777764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.88  E-value=1.6e-22  Score=145.18  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=110.7

Q ss_pred             eeEEecCCCeEEEEE-Eec--c----eeeeecccCcc----eeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLC-EAQ--E----NMWFKFIEGSS----RKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C-~~~--~----~~W~~~~~~~~----~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ..+.+.+|++|.|.| .+.  .    +.|++++....    .........|+.. .+++|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence            457889999999999 333  2    99999642110    0011122344443 3457999999999999999999999


Q ss_pred             CCcc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEE
Q psy3045          91 VGGE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISW  168 (267)
Q Consensus        91 ~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W  168 (267)
                      .|..  ...+.|.|...+.   .+.                               ....+..+.|.|.+.+.|.+.+.|
T Consensus        84 ~g~~~~~~~~~l~V~~~~~---~p~-------------------------------i~~~~~~v~L~C~~~g~p~p~i~W  129 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVS---KPM-------------------------------IYWECSNATLTCEVLEGTDVELKL  129 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCC---CCE-------------------------------EEEETTTTEEEEECSSCSSCEEEE
T ss_pred             CCCEEEEEEEEEEEeCCCC---CCE-------------------------------EEecCCcEEEEEEecCCCCcEEEE
Confidence            8875  5666777765321   111                               112245699999999999999999


Q ss_pred             EECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         169 MKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       169 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ++++..+.....  +.+..+..+|+|.|+|.|.|..+.......+
T Consensus       130 ~~~g~~l~~~~~--~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          130 YQGKEHLRSLRQ--KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             EETTEEEEEESS--SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EECCEECCCCCc--EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            999988765444  4555777999999999999998876665544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.88  E-value=7e-22  Score=154.22  Aligned_cols=169  Identities=22%  Similarity=0.343  Sum_probs=118.5

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      |.|...+  ....+.+|+++.|.|.+.+     +.|++++....  .. ....++ ...++.|.|.+++..|+|.|+|.+
T Consensus       109 p~i~~~~--~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~--~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  183 (304)
T 2yd9_A          109 PNIDMGP--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD--PS-ASNGRIKQLRSGALQIESSEETDQGKYECVA  183 (304)
T ss_dssp             CEEEECC--CCEEEETTSCEEECCEEECSSCCEEEEEETTEECC--GG-GGTTSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             CeeecCC--ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECc--CC-CCcceEEeCCCeEEEEccCCcccCEEEEEEE
Confidence            6777666  6788999999999999987     99999633211  11 011122 223458999999999999999999


Q ss_pred             EcCCCccEEE-EEEEEEe---ccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          88 NNSVGGESVE-TVLTVTA---PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        88 ~~~~~~~~~~-~~l~V~~---~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      .|..|..... ..+.|..   ++.+...                             +....+.+|+.+.|.|.+.|.|.
T Consensus       184 ~n~~g~~~~~~~~l~v~~~~~~P~~~~~-----------------------------~~~~~v~~G~~v~l~C~~~g~p~  234 (304)
T 2yd9_A          184 TNSAGVRYSSPANLYVRVQNVAPRFSIL-----------------------------PMSHEIMPGGNVNITCVAVGSPM  234 (304)
T ss_dssp             EETTEEEECCCEEEEEECCCEEEEEEEC-----------------------------CCCBCCCTTCCEEEEEEEEEESC
T ss_pred             EeCCCCEEeccEEEEEEeeccCCcEEec-----------------------------CCceEEcCCCeEEEEEEEeeeCC
Confidence            9988764322 4455542   1111111                             12225778999999999999999


Q ss_pred             ceEEEEECCccCCCCC---CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         164 KTISWMKDGKPVPDHN---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       164 ~~~~W~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.+.|++++..+....   ...+.+.....+|+|.|+|.|.|..|....++.|.|.
T Consensus       235 p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          235 PYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             CEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             CEEEEEECCEECCCcccccCCcEEEEEcccccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            9999999998876432   2333333334469999999999999988888777775

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.88  E-value=2.3e-21  Score=151.89  Aligned_cols=181  Identities=18%  Similarity=0.215  Sum_probs=126.1

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccc-cCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV-PLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+|.+...+  ....+..|+.+.|.|.+.+      +.|++++......... ....+.....+.|.|......|.|.|
T Consensus       115 ~~~P~~~~~~--~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y  192 (313)
T 4fqp_A          115 LAKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV  192 (313)
T ss_dssp             BBCCEEEEEE--CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEE
T ss_pred             ccCCcceecc--cceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeE
Confidence            3456555544  4567788999999998764      9999975433221111 11222223345789999999999999


Q ss_pred             EEEEEcCCCccEE--EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          84 LCVVNNSVGGESV--ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        84 ~C~~~~~~~~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      +|.+.|..+....  .+.|.|..+|.+...+                            .....+..|+.+.|.|.+.|.
T Consensus       193 ~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~----------------------------~~~~~~~~g~~v~l~C~~~g~  244 (313)
T 4fqp_A          193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISG----------------------------YDNNWYLGQNEATLTCDARSN  244 (313)
T ss_dssp             EEEEECTTSSSCEEEEEECCBCEEEEEEEEC----------------------------CCSCEETTCCCEEEEEEEEEE
T ss_pred             EEEEEccCcCccceeeeecccccCCcccccc----------------------------ccceeecCCCeEEEEEEecCC
Confidence            9999998766433  3444444433221111                            111255678999999999999


Q ss_pred             CCc-eEEEEECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCe
Q psy3045         162 PVK-TISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV  223 (267)
Q Consensus       162 p~~-~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~  223 (267)
                      |.| .+.|++++..+...   .+..|.|.++..+|+|.|+|.|.|..|....++.|.|..  .||.
T Consensus       245 P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~--~PP~  308 (313)
T 4fqp_A          245 PEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE--GPPH  308 (313)
T ss_dssp             SCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC--CC--
T ss_pred             CCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe--CCCC
Confidence            987 79999999988653   357899999999999999999999999888887777763  5554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.87  E-value=5.6e-22  Score=146.93  Aligned_cols=167  Identities=19%  Similarity=0.272  Sum_probs=116.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceecc------------ccCCceEEE-------EeeEEEEeec
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVA------------VPLNDRVKQ-------VSGTLIIKEA   75 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~------------~~~~~~~~~-------~~~~l~i~~~   75 (267)
                      +.+++.+|++++|.|.+.+        +.|+|++.+......            ..+..|+..       .+.+|.|.++
T Consensus         7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            6789999999999999876        789997543322111            111222221       2357999999


Q ss_pred             ccCCCeeEEEEEEcCCCccE-EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          76 KVEDSGKYLCVVNNSVGGES-VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      +.+|+|.|+|.+.+..+... ....+.+...+.....                            ......+..|+.+.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~  138 (218)
T 4frw_A           87 VQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLN----------------------------PGPALEEGQGLTLAA  138 (218)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEE----------------------------ECSCEETTCCSEEEE
T ss_pred             cHHHCCceeEEEEeccCceeeeEEEEEEeeeccceee----------------------------eeeeeeeeeccccce
Confidence            99999999999987666533 3333333322211110                            011225667888999


Q ss_pred             EeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         155 TCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       155 ~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      .|.+.+.|.+.+.|++++..+...          ..+.|.|..+..+|.|.|+|.|.|..+.......+.|.+
T Consensus       139 ~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          139 SCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             eeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            999999999999999998776421          124699999999999999999999998887777666654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.87  E-value=1.1e-22  Score=150.71  Aligned_cols=160  Identities=17%  Similarity=0.342  Sum_probs=109.1

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+.+.+|++++|.|.+.+     +.|++...+.......        ....|+..    .+.+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            788999999999999996     9999853322211110        12334432    345799999999999999999


Q ss_pred             EEcCCC---ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-C
Q psy3045          87 VNNSVG---GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-P  162 (267)
Q Consensus        87 ~~~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p  162 (267)
                      +.+..+   .....+.|.|...+.  ..+...                       ..+....+..|+.+.|.|.+.+. |
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~--~~P~i~-----------------------~~~~~~~~~~g~~v~l~C~~~g~~p  143 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPN--AAPSVT-----------------------LFPPSSEELKTNQATLVCMINGFYP  143 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCC--BCCEEE-----------------------EECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             eccCCcceeEEcCceEEEEeCCCC--CCCeEE-----------------------ccCCCcccccCCcEEEEEEeeceeC
Confidence            999877   234456666663211  111111                       00111123369999999999885 4


Q ss_pred             C-ceEEEEECCccCCCC--------C------CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         163 V-KTISWMKDGKPVPDH--------N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       163 ~-~~~~W~~~~~~~~~~--------~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      + +.+.|+++|..+...        .      ...|.|..+..+|.|.|+|.|.|..+...
T Consensus       144 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3mj8_L          144 ADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE  204 (213)
T ss_dssp             SCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEE
T ss_pred             CCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEE
Confidence            3 499999999887542        1      13478888889999999999999875443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.87  E-value=1.7e-22  Score=146.47  Aligned_cols=163  Identities=21%  Similarity=0.290  Sum_probs=105.8

Q ss_pred             EecCCCeEEEEEEecc---eeeeecccCcceeccccCCceEEEEeeEEEEee-cccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045          26 KKPGGESFALLCEAQE---NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE-AKVEDSGKYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      ...+|+++.|.|.+.+   +.|+|++...      ...     .+.+|.|.+ ++.+|+|.|+|.+.|..|.......+.
T Consensus        10 v~~~G~~v~L~C~~~~~~~i~W~k~g~~l------~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDSDENLKWEKNGQEL------PQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCCCTTCEEEETTEEE------CSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCCCCceEEEECCEEC------CCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            4478999999999988   9999963211      110     234799999 999999999999999988765555555


Q ss_pred             EEeccccccCCce-EEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC--C
Q psy3045         102 VTAPLAAGVEPTV-QTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--H  178 (267)
Q Consensus       102 V~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~--~  178 (267)
                      |............ ..........+.+     .............+.+|+.+.|.|.+   |.+.+.|+|+|..+..  .
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~  150 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGS-----QTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA  150 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCC-----SCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC
T ss_pred             EecccccccccccccccccCCcccccc-----ccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC
Confidence            4432221111000 0000000000000     00000000001134489999999988   7789999999998863  3


Q ss_pred             CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         179 NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ....|.|..+..+|+|.|+|.|.|..++.
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            56789999999999999999999987654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.87  E-value=2.7e-21  Score=143.22  Aligned_cols=164  Identities=13%  Similarity=0.153  Sum_probs=111.4

Q ss_pred             eeEEecCC--CeEEEEEEecc----eeeeec-ccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          23 IRFKKPGG--ESFALLCEAQE----NMWFKF-IEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        23 ~~~~v~~g--~~v~l~C~~~~----~~W~~~-~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      ..+.+.+|  +++.|.|.+.+    +.|++. .++..    +....++. .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~----~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF----VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEE----CCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             eEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCcc----ccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeE
Confidence            68899999  99999999987    999874 11111    11112222 223579999999999999999998843332


Q ss_pred             -EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC--CceEEEEEC
Q psy3045          95 -SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP--VKTISWMKD  171 (267)
Q Consensus        95 -~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~  171 (267)
                       +..+.|.|.....    +...                      ...+....+.+|+.+.|.|.+.+.|  .+.+.|+++
T Consensus        91 ~s~~~~l~v~~~~~----p~~~----------------------~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~  144 (213)
T 2x1w_L           91 QSIMYIVVVVGYRI----YDVV----------------------LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP  144 (213)
T ss_dssp             ECCCEEEEECBCCE----EEEE----------------------EESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECS
T ss_pred             EEEEEEEEEeCCcc----cceE----------------------EcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEec
Confidence             2224555532100    0000                      0112223788899999999998765  458999998


Q ss_pred             CccCCCC-----------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         172 GKPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       172 ~~~~~~~-----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +..+...                 ....|.|.+++.+|+|.|+|.|.|..|....+..|.|.
T Consensus       145 g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          145 SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             CSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence            8764211                 12349999999999999999999999988888888876

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.87  E-value=5e-21  Score=151.10  Aligned_cols=161  Identities=20%  Similarity=0.279  Sum_probs=118.6

Q ss_pred             eEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC--CCccE
Q psy3045          24 RFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS--VGGES   95 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~   95 (267)
                      ...+.+|+++.|.|.+.+      +.|++++...     .....++...+..|.|.+++.+|+|.|+|.+.|.  .|...
T Consensus       137 ~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~  211 (329)
T 3oq3_B          137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL-----IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND  211 (329)
T ss_dssp             ETTSSTTTCEEEECCCCSCCCCCEEEEEETTEEC-----CCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSC
T ss_pred             ceEEeCCCcEEEEeccCCCCCCceEEEEECCccC-----CCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCce
Confidence            445678999999998876      8999963321     1123444445689999999999999999999987  65543


Q ss_pred             EE----EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC---Cc-eEE
Q psy3045          96 VE----TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP---VK-TIS  167 (267)
Q Consensus        96 ~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~-~~~  167 (267)
                      ..    +.|.|...+.....                         .. .+....+..|+.+.|.|.+.+.|   .+ .+.
T Consensus       212 ~~~s~~~~l~V~~~~~~~~~-------------------------~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~  265 (329)
T 3oq3_B          212 IVVSRCKILTVIPSQDHRFK-------------------------LI-LDPKINVTIGEPANITCTAVSTSLLVDDVLID  265 (329)
T ss_dssp             EEEEEEEEEEEECCCCCCEE-------------------------EE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEE
T ss_pred             eEEEeeEEEEEECCCCCCCc-------------------------ee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEE
Confidence            33    55666654321100                         00 12334788999999999999987   77 899


Q ss_pred             EEECCccC-CCCC-------------CCeEEeccCCCCCCe-EEEEEEEcCCCCceEEEEEEE
Q psy3045         168 WMKDGKPV-PDHN-------------EPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       168 W~~~~~~~-~~~~-------------~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      |++++..+ ..+.             ...|.|.++..+|.| .|+|.|.|..|....+..|.|
T Consensus       266 W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            99999874 2221             356999999999999 999999999998877776665

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.87  E-value=9.1e-21  Score=148.60  Aligned_cols=176  Identities=17%  Similarity=0.282  Sum_probs=123.5

Q ss_pred             CCcccCCCCc-eeEEecCCCeEEEEEEe------cc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCC
Q psy3045          13 APTFSSVSDI-IRFKKPGGESFALLCEA------QE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        13 ~P~~~~~~~~-~~~~v~~g~~v~l~C~~------~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      +|.+...+.. ....+.+|+++.|.|.+      .+     +.|++++....     ....++...+..|.|.+++.+|+
T Consensus       100 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~-----~~~~~~~~~~~~L~i~~v~~~d~  174 (315)
T 1itb_B          100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLL-----LDNIHFSGVKDRLIVMNVAEKHR  174 (315)
T ss_dssp             CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECC-----CCSSSEEEETTEEEESSCCGGGC
T ss_pred             CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECC-----CccceEeecCceEEEEeceehhC
Confidence            4555433311 34678999999999998      44     99999633211     12334555667999999999999


Q ss_pred             eeEEEEEE-cCCCcc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          81 GKYLCVVN-NSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        81 G~Y~C~~~-~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      |.|+|.+. +..|..   ...+.+.+..... ..                      +|...........+..|+.+.|.|
T Consensus       175 G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~-~~----------------------~P~~~~~~~~~~~~~~g~~v~l~C  231 (315)
T 1itb_B          175 GNYTCHASYTYLGKQYPITRVIEFITLEENK-PT----------------------RPVIVSPANETMEVDLGSQIQLIC  231 (315)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEECCCC-CC----------------------CCEECSCCSEEEECCSSSCEEEEE
T ss_pred             cEEEEEEEcCCCCcEEEEEEEEEEEEecCCC-CC----------------------CCEEecCCCCcEEEeCCCcEEEEE
Confidence            99999999 676664   2233333332110 00                      111111111123678899999999


Q ss_pred             EeCCCCCceEEEEECCccCCCCC---------------------CCeEEeccCCCCC-CeEEEEEEEcCCCCceEEEEEE
Q psy3045         157 KYEGNPVKTISWMKDGKPVPDHN---------------------EPVFRIDSVRKED-KGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       157 ~~~~~p~~~~~W~~~~~~~~~~~---------------------~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+.+.|.+.+.|+++|..+....                     ...|.|.++..+| +|.|+|.|.|..|....++.|.
T Consensus       232 ~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~  311 (315)
T 1itb_B          232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  311 (315)
T ss_dssp             EEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEE
T ss_pred             EEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEE
Confidence            99999999999999998886532                     1279999999999 9999999999999988888777


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      +.
T Consensus       312 v~  313 (315)
T 1itb_B          312 YP  313 (315)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.87  E-value=2.3e-21  Score=141.26  Aligned_cols=126  Identities=24%  Similarity=0.439  Sum_probs=108.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++..+|+|.|+|.+.+..+....
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~   91 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS   91 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeE
Confidence            445588899999999999998888999999998876442           347999999999999999999998887777


Q ss_pred             EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         210 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       210 ~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      ...+.+.....+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.
T Consensus        92 ~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  148 (194)
T 2a38_A           92 TAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL  148 (194)
T ss_dssp             EEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSS
T ss_pred             EEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCC
Confidence            777888765567777777777789999999999999999999999999999987654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.87  E-value=5.2e-21  Score=148.09  Aligned_cols=169  Identities=18%  Similarity=0.222  Sum_probs=122.7

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEE
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +...+  ....+.+|+++.|.|.+.+      +.|++.+. .    ......++.. .+..|.|.+++.+|+|.|+|.+.
T Consensus        92 ~~~~~--~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~-~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  164 (289)
T 3ejj_X           92 WNLLA--QEVTVVEGQEAVLPCLITDPALKDSVSLMREGG-R----QVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM  164 (289)
T ss_dssp             EEESC--SEEEEETTSCEEECEEESCGGGGGSEEEEEGGG-E----ECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             eeccc--ceEEEecCCceEeEEEccCCCcceEEEEEecCC-e----ecCCCccEEECCCCCEEEeecccccCEEEEEEEE
Confidence            44444  6889999999999999988      89987422 1    1122333332 34579999999999999999999


Q ss_pred             c-CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC-CCCceE
Q psy3045          89 N-SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVKTI  166 (267)
Q Consensus        89 ~-~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~  166 (267)
                      + ..+..+..+.|.|.....  ..+...                       ..+....+.+|+.+.|.|.+.+ .|.+.+
T Consensus       165 ~~~~~~~~~~~~l~V~~~~~--~~p~i~-----------------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~i  219 (289)
T 3ejj_X          165 VNGRESTSTGIWLKVNRVHP--EPPQIK-----------------------LEPSKLVRIRGEAAQIVCSATNAEVGFNV  219 (289)
T ss_dssp             ETTEEEECCCEEEEEESSCC--CCCEEE-----------------------EESSSEECCSSSCEEEEEEEEESSSCCEE
T ss_pred             eCCCccccccEEEEEEECCC--CCCeEE-----------------------ecCCceEEEeCCcEEEEEEeCCCCCceEE
Confidence            4 333455666777763211  011111                       1122335678999999999988 688999


Q ss_pred             EEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         167 SWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       167 ~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .|++++..+...           ....|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       220 ~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             EEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred             EEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence            999999887542           14679999999999999999999999998888887765

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.86  E-value=3e-21  Score=142.60  Aligned_cols=160  Identities=21%  Similarity=0.348  Sum_probs=107.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ....+.+|++++|.|.+.+     +.|+++..+.....        ......|+...    ..+|.|.+++.+|+|.|+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (210)
T 1lk3_L            8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (210)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEE
Confidence            6889999999999999987     99999643322100        01122444332    3489999999999999999


Q ss_pred             EEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC
Q psy3045          86 VVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV  163 (267)
Q Consensus        86 ~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~  163 (267)
                      .+.+..+.. .....|.|.....   .+...                      ...+. ..+..|+.+.|.|.+.|. |.
T Consensus        88 ~~~~~~~~~~~~~~~l~V~~~~~---~P~v~----------------------~~~~~-~~~~~g~~v~l~C~~~g~~p~  141 (210)
T 1lk3_L           88 QQSWNGPLTFGAGTKLELKRADA---APTVS----------------------IFPPS-TEQLATGGASVVCLMNNFYPR  141 (210)
T ss_dssp             EECSSSSCEECCCEEEEECCCCB---CCEEE----------------------EECCC-HHHHTTTEEEEEEEEEEEBSS
T ss_pred             EEEcCCCceeCCCEEEEEcCCCc---CCeEE----------------------EECCc-hhhccCCcEEEEEEEEeEeCC
Confidence            999876542 2233555543110   11111                      00000 123368999999999874 44


Q ss_pred             c-eEEEEECCccCCCC-----------CC-----CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         164 K-TISWMKDGKPVPDH-----------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       164 ~-~~~W~~~~~~~~~~-----------~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      + .+.|+++|..+...           +.     +.|.|..+..+|+|.|+|.|.|......
T Consensus       142 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          142 DISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP  203 (210)
T ss_dssp             CCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             ceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence            3 89999999876533           11     2688999999999999999999876443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.86  E-value=9.4e-22  Score=145.60  Aligned_cols=163  Identities=21%  Similarity=0.315  Sum_probs=109.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCccee--------ccccCCceEEEE----eeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK--------VAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~--------~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|+++.|.|.+.+     +.|+++..+....        .......++...    ..+|.|.+++.+|+|.|+|
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (213)
T 3d9a_L            9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC   88 (213)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEE
Confidence            6789999999999999987     9999864433211        011122344332    3489999999999999999


Q ss_pred             EEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC-CCC
Q psy3045          86 VVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPV  163 (267)
Q Consensus        86 ~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~  163 (267)
                      .+.+..+.. .....|.|.....   .+....                      ..+ ......|+.+.|.|.+.+ .|.
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~~~---~p~v~~----------------------~~~-~~~~~~g~~~~l~C~~~g~~p~  142 (213)
T 3d9a_L           89 QQSNSWPYTFGGGTKLEIKRADA---APTVSI----------------------FPP-SSEQLTSGGASVVCFLNNFYPK  142 (213)
T ss_dssp             EECSSSSCEECCCEEEEECCCCB---CCEEEE----------------------ECC-CHHHHHTTEEEEEEEEEEEBSS
T ss_pred             eeecCCcceeCCCEEEEEecCCC---CceeEe----------------------ECC-ChhhcCCCcEEEEEEEeeecCC
Confidence            999876642 2234555543110   111110                      000 012336889999999987 455


Q ss_pred             c-eEEEEECCccCCCC-----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         164 K-TISWMKDGKPVPDH-----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       164 ~-~~~W~~~~~~~~~~-----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      + .+.|+++|..+...           +     .+.|.|..+..+|.|.|+|.|.|.........
T Consensus       143 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3d9a_L          143 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK  207 (213)
T ss_dssp             CCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred             ceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence            4 89999999876543           1     12789999999999999999999876544333

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.86  E-value=1.8e-21  Score=147.46  Aligned_cols=165  Identities=20%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccc-----------cCCceE-----EEEeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAV-----------PLNDRV-----KQVSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~-----------~~~~~~-----~~~~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+          +.|+++..........           ....++     ...+.+|.|.+++
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   90 (248)
T 3pv7_A           11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ   90 (248)
T ss_dssp             SEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred             CCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC
Confidence            5778999999999999943          8999964332211000           001111     1123469999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.+..+.....+.|.|..++.....+.                              ..+..|+.+.|.|
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~------------------------------~~~~~~~~~~L~C  140 (248)
T 3pv7_A           91 LEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD------------------------------QVGMKENEDKYMC  140 (248)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------------------------------------CEEEE
T ss_pred             HHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC------------------------------CccccCCCcEEEE
Confidence            9999999999999887777778888876443222211                              1344577888999


Q ss_pred             EeCC-CCCc-eEEEEECCccCCCC----------------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         157 KYEG-NPVK-TISWMKDGKPVPDH----------------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       157 ~~~~-~p~~-~~~W~~~~~~~~~~----------------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      .+.+ .|.+ .+.|++++..+...                +     ...|.+.....+|.|.|+|.|.|..+....+..+
T Consensus       141 ~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v  220 (248)
T 3pv7_A          141 ESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNF  220 (248)
T ss_dssp             EEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEE
T ss_pred             EEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEE
Confidence            9998 6888 99999999754311                1     1357777888889999999999998875555555


Q ss_pred             EEec
Q psy3045         214 KLGG  217 (267)
Q Consensus       214 ~v~~  217 (267)
                      .+.+
T Consensus       221 ~l~V  224 (248)
T 3pv7_A          221 TLTA  224 (248)
T ss_dssp             CC--
T ss_pred             EEEE
Confidence            4443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.86  E-value=3e-20  Score=137.57  Aligned_cols=164  Identities=19%  Similarity=0.345  Sum_probs=110.7

Q ss_pred             eeEEecCCCeEEEEEEec---------c---eeeeecccCcceec-----------cccCCceEEEE------eeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQ---------E---NMWFKFIEGSSRKV-----------AVPLNDRVKQV------SGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~---------~---~~W~~~~~~~~~~~-----------~~~~~~~~~~~------~~~l~i~   73 (267)
                      ..+.+.+|++|+|.|.+.         .   +.|++++.+.....           ......|+...      +.+|.|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   87 (214)
T 2zg1_A            8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIG   87 (214)
T ss_dssp             SEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             cEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEc
Confidence            678999999999999975         2   99999744321100           11223454432      3479999


Q ss_pred             ecccCCCeeEEEEEEcCCCcc----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecC
Q psy3045          74 EAKVEDSGKYLCVVNNSVGGE----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG  149 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g  149 (267)
                      +++.+|+|.|+|.+.+..+..    ...+.|.|...+.   .+...                       . +.  .+.+|
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~p~i~-----------------------~-~~--~~~~G  138 (214)
T 2zg1_A           88 DARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE---KPDIH-----------------------F-LE--PLESG  138 (214)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC---CCEEC--------------------------C--CCCTT
T ss_pred             cCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC---CCcee-----------------------c-Cc--cccCC
Confidence            999999999999999875321    1356677765321   11100                       0 00  25679


Q ss_pred             CCEEEEeEeCCC----CCceEEEEECCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         150 RPAQFTCKYEGN----PVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       150 ~~v~l~C~~~~~----p~~~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.++|.|.+.+.    |.+.+.|++++.....   ...+.|.|..+..+|.|.|+|.|.|..+....+..+.+
T Consensus       139 ~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             CCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             CeEEEEEEeccCCCCCCCceEEEeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            999999999874    7889999999876432   34578999999999999999999997654444444443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.86  E-value=7.2e-20  Score=152.70  Aligned_cols=216  Identities=17%  Similarity=0.252  Sum_probs=134.9

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeec
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEA   75 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~   75 (267)
                      ..+.+.+|++++|.|.+.+         +.|++...+.....            ......|+...      +.+|.|.++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   87 (512)
T 1zvo_C            8 GPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSM   87 (512)
T ss_pred             CCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcC
Confidence            5789999999999999862         89998643322110            01123455432      368999999


Q ss_pred             ccCCCeeEEEEEEcCCC-----------c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCc
Q psy3045          76 KVEDSGKYLCVVNNSVG-----------G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT  142 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~  142 (267)
                      +.+|+|.|+|.+.+..+           .  ....+.|.|...+.  ..+...                      ...+.
T Consensus        88 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~~P~i~----------------------~~~~~  143 (512)
T 1zvo_C           88 SAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT--KAPDVF----------------------PIISG  143 (512)
T ss_pred             CHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC--cCCeEE----------------------eccCC
Confidence            99999999999987642           0  12334566653211  011111                      00000


Q ss_pred             eEEEecCCCEEEEeEeCCC-CCc-eEEEEECCccCC--------C-CC----CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         143 VQTIDFGRPAQFTCKYEGN-PVK-TISWMKDGKPVP--------D-HN----EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~~~--------~-~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ......|+.+.|.|.+.+. |.+ .+.|++++....        . +.    .+.|.|.....+ .|.|+|.|.|..+..
T Consensus       144 ~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~  222 (512)
T 1zvo_C          144 CRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKS  222 (512)
T ss_pred             cccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCc
Confidence            0001236889999999887 654 999999764321        0 01    124777776666 899999999988765


Q ss_pred             eEEE-----------EEEEecc-------------------------------------------------cCCCeeec-
Q psy3045         208 QASG-----------ELKLGGR-------------------------------------------------FDPPVIKE-  226 (267)
Q Consensus       208 ~~~~-----------~l~v~~~-------------------------------------------------~~~p~~~~-  226 (267)
                      ....           .+.+.+.                                                 ..+|.+.. 
T Consensus       223 ~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~  302 (512)
T 1zvo_C          223 KKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLL  302 (512)
T ss_pred             eEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEE
Confidence            5443           2233210                                                 01233322 


Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcC
Q psy3045         227 SFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  263 (267)
Q Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~  263 (267)
                      .+....+.+|+.+.|.|.+.|++++  .|.|+++|+.+.
T Consensus       303 ~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~  341 (512)
T 1zvo_C          303 TPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPT  341 (512)
T ss_pred             CCChHHhccCCceEEEEEEeceECCCeEEEEEECCEecc
Confidence            3333446689999999999987543  899999998865

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=8e-20  Score=152.44  Aligned_cols=230  Identities=17%  Similarity=0.206  Sum_probs=134.5

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCccee-cc-ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE-
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRK-VA-VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET-   98 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~-~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-   98 (267)
                      .|+.+.|.|.+.+       +.|+++....... .. .....+.....+.|.|...... .|.|+|.+.|..+...... 
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~  227 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF  227 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence            4689999999987       8999852211100 00 0111122233456888888777 8999999999887654433 


Q ss_pred             ----------EEEEEeccccccCC-----ceEEEeCC--------------------CceEEEEEeecCCCcccccCCce
Q psy3045          99 ----------VLTVTAPLAAGVEP-----TVQTIDFG--------------------RPAQFTCKYEISPPLAAGVEPTV  143 (267)
Q Consensus        99 ----------~l~V~~~~~~~~~~-----~~~~~~~~--------------------~~~~~~c~~~~~~~~~~~~~~~~  143 (267)
                                .+.+..++......     .......|                    .. .-.|.....+|......+..
T Consensus       228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~p~v~~~~p~~  306 (512)
T 1zvo_C          228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETK-TPECPSHTQPLGVYLLTPAV  306 (512)
T ss_pred             cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcc-cccCCCCCCCCEEEEECCCh
Confidence                      22332222100000     00000000                    00 00011011122222333333


Q ss_pred             EEEecCCCEEEEeEeCCCCC--ceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNPV--KTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..+..|+.+.|.|.+.++.+  ..++|+++|..+...         ..      +.|.|.....+|.|.|+|.|.|..+.
T Consensus       307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            34667999999999998733  499999999775411         11      34888888888999999999998765


Q ss_pred             ceEEEEEEEe-cc--cCCCeeecCCceeEEecCCcEE-EEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         207 AQASGELKLG-GR--FDPPVIKESFSDETLNPGPNYY-FKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       207 ~~~~~~l~v~-~~--~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      .. ...+... ..  ..+|.+...+...   +|+.+. |.|.+.|++++  .+.|+|||+.+..
T Consensus       387 ~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  446 (512)
T 1zvo_C          387 PQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNT  446 (512)
T ss_pred             CC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcC
Confidence            43 2222221 11  1356655443322   789999 99999996554  6899999998864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.85  E-value=4.8e-21  Score=148.47  Aligned_cols=173  Identities=17%  Similarity=0.234  Sum_probs=119.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCe-eEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSG-KYL   84 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~   84 (267)
                      .+|.+...+  ....+.+|+++.|.|.+.+     +.|++. ++..    +....++.. .+..|.|.+++.+|+| .|+
T Consensus        90 ~~~~~~~~~--~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~-~g~~----l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~  162 (290)
T 2o26_X           90 DPAKLFLVG--LPLFGKEDSDALVRCPLTDPQVSQYSLIEC-DGKS----LPTDLTFVPNPKAGITIKNVKRAYHRLCVR  162 (290)
T ss_dssp             CSSCCBCCC--CCEEEETTSCEEECCCBSCCSCEEEEEEET-TSCC----CCTTCEEEEETTTEEEEESCCGGGTTCEEE
T ss_pred             CCCcccccc--cceEEecCCeEEEeCcCCCCCCceEEEEeC-CCcC----CCCCCceeeCCCCCEEEecccHHHCCCEEE
Confidence            345444444  6788899999999999876     899542 1211    122333332 2358999999999999 999


Q ss_pred             EEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC
Q psy3045          85 CVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV  163 (267)
Q Consensus        85 C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  163 (267)
                      |.+.|..+.. +..+.|.|.....  ..+.                       +...+....+.+|+.+.|.|.+.+.|.
T Consensus       163 C~a~n~~~~~~s~~~~l~V~~~~~--~~P~-----------------------i~~~~~~~~v~~G~~v~l~C~~~g~p~  217 (290)
T 2o26_X          163 CAAQRDGTWLHSDKFTLKVREAIK--AIPV-----------------------VSVPETSHLLKKGDTFTVVCTIKDVST  217 (290)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCC--SCCE-----------------------EECSCSBCCCCTTCCEEEEEEEEESST
T ss_pred             EEEEECCceEEeEEEEEEEEeCCC--CCCc-----------------------cccCCCcceEecCCcEEEEEEEecCCc
Confidence            9999974442 3346666653110  0111                       111122236788999999999999988


Q ss_pred             ce-EEEEECCccC----CC------------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         164 KT-ISWMKDGKPV----PD------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       164 ~~-~~W~~~~~~~----~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +. +.|++++..+    ..            .....|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus       218 p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             TCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             ceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            85 9999999873    21            124679999999999999999999999988777666654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.85  E-value=4.7e-21  Score=139.62  Aligned_cols=156  Identities=17%  Similarity=0.217  Sum_probs=106.7

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcce-ec-----------cccCCceEEE-EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSR-KV-----------AVPLNDRVKQ-VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~-~~-----------~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|.+.+      +.|++++..... ..           ...+..|+.. .+++|.|.+++.+|+|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y   85 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSY   85 (193)
T ss_dssp             EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEE
T ss_pred             eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceE
Confidence            6889999999999999864      899996321100 00           0011234433 356899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCC-CEEEEeEeCCC-
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGR-PAQFTCKYEGN-  161 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~-  161 (267)
                      +|.+.+..+.....+.|.|...+..   +... .                      ..  .....|. .+.|.|.+.+. 
T Consensus        86 ~C~~~~~~~~~~~~~~L~V~~~~~~---p~i~-~----------------------~~--~~~~~g~~~v~L~C~~~g~~  137 (193)
T 2if7_A           86 RAQISTKTSAKLSSYTLRILRQLRN---IQVT-N----------------------HS--QLFQNMTCELHLTCSVEDAD  137 (193)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCEE---EEEE-E----------------------CC--C---CSSEEEEEEEEEESCC
T ss_pred             EEEEEecCCCeEEEEEEEEEccCCC---CeEe-c----------------------Cc--eeecCCCceEEEEEEEecCC
Confidence            9999998877666777777653221   1000 0                      00  0123355 79999999985 


Q ss_pred             CCceEEEEECCccCCCCCCCeEEeccCCCC-CCeEEEEEEEcCCCCce
Q psy3045         162 PVKTISWMKDGKPVPDHNEPVFRIDSVRKE-DKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~~  208 (267)
                      |.+.+.|++++..+..  ...|.|.....+ |.|.|+|.|.|..+...
T Consensus       138 p~p~i~W~~~g~~l~~--~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s  183 (193)
T 2if7_A          138 DNVSFRWEALGNTLSS--QPNLTVSWDPRISSEQDYTCIAENAVSNLS  183 (193)
T ss_dssp             TTCEEEEEETTEEEES--SSEEEEEECTTTCSCCEEEEEEEETTEEEE
T ss_pred             CceEEEEEeCCEEcCC--CCeEEEEeccCcCCCCcEEEEEECCCCccc
Confidence            5789999999987643  456777655554 89999999999987654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.85  E-value=3.3e-21  Score=150.80  Aligned_cols=170  Identities=14%  Similarity=0.174  Sum_probs=117.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEec-c-----eeeeecccCcceeccccCCceEEEE------eeEEEEeecccCCC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIKEAKVEDS   80 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~   80 (267)
                      +|.+...+. ....+.+|+++.|.|.+. +     +.|++++...      ....++...      ...|.|.+++.+|+
T Consensus       106 ~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  178 (312)
T 2y23_A          106 FPTVPVKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI------FEGPKYKMHIDRNTGIIEMFMEKLQDEDE  178 (312)
T ss_dssp             SCBCCEEEE-EEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEE------CSSSSCEEEEETTTTEEEEEESCCCGGGC
T ss_pred             CCccccccC-CceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEEC------eeCCcEEEEEccCCCEEEEEEccCCcccC
Confidence            565555441 388999999999999998 4     9999963321      111222211      23599999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccc--------------c-ccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLA--------------A-GVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~--------------~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      |.|+|.+.+..  ......+.+.....              . ...+...                        .+....
T Consensus       179 G~Y~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------------------------~~~~~~  232 (312)
T 2y23_A          179 GTYTFQLQDGK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV------------------------EYLSWE  232 (312)
T ss_dssp             EEEEEEEESSS--CEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE------------------------EEEEEE
T ss_pred             EeEEEEEEeCC--ceEEEEEEEcchhhhhhcccccccccchhhccCCcee------------------------ecceEE
Confidence            99999997643  33333333321000              0 0011110                        001136


Q ss_pred             EecCCCEEEEeEeCCCCCc-eEEEEECCccCCC-------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         146 IDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +.+|+.+.|.|.+.+.|.+ .+.|++++..+..       .....|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus       233 v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            7889999999999999877 9999999987752       12368999999999999999999999998888777654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.85  E-value=5.4e-20  Score=139.28  Aligned_cols=168  Identities=18%  Similarity=0.242  Sum_probs=108.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++++|.|.+.+       +.|+++..+....             .......|+...      ..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            4688999999999999875       8999964332111             011123455432      2479999999


Q ss_pred             cCCCeeEEEEEEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          77 VEDSGKYLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      .+|+|.|+|.+.+..+.  ....+.|.|...+......         .  +.   ....+..+...+....+.+|+++.|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~---------~--~~---~~~~~~~~~~~~~~~~v~~G~~v~L  155 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGG---------G--SG---GGGSETTLTQSPATLSLSPGERATL  155 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC--------------------------CCCCEEEECSEEEECTTSCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEeccccccccc---------c--cC---CCCcceEEEccCCEEEecCCCcEEE
Confidence            99999999999987322  1223455555432100000         0  00   0001111222344557889999999


Q ss_pred             EeEeCCCCCceEEEEE--CCccCC---------------------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         155 TCKYEGNPVKTISWMK--DGKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       155 ~C~~~~~p~~~~~W~~--~~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .|.+.+.+.+.+.|++  ++..+.                     ......|.|.++..+|+|.|+|.|.+..
T Consensus       156 ~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          156 SCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            9999999888999999  554431                     1123469999999999999999998753

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.85  E-value=2.8e-20  Score=141.55  Aligned_cols=153  Identities=20%  Similarity=0.350  Sum_probs=106.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence            5678999999999999864       99999643322110             01123455433      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCc---c--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          77 VEDSGKYLCVVNNSVGG---E--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~---~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      .+|+|.|+|.+.+..+.   .  ...+.|.|...+.+..                             .+....+.+|++
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~-----------------------------~p~~~~v~~G~~  138 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQ-----------------------------TPLSLPVSLGDQ  138 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEE-----------------------------ECSEEEECTTCC
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEe-----------------------------cCcEEEEecCCc
Confidence            99999999999987652   1  1234555543221111                             123347889999


Q ss_pred             EEEEeEeCCCCCc-----eEEEEE--CCccCC-------------C--------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         152 AQFTCKYEGNPVK-----TISWMK--DGKPVP-------------D--------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       152 v~l~C~~~~~p~~-----~~~W~~--~~~~~~-------------~--------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      ++|.|.+.+.|.+     .+.|+|  ++..+.             .        .....|.|.++..+|+|.|+|.+.+.
T Consensus       139 v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          139 ASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             EEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            9999999988764     999999  555431             0        12346999999999999999999875


Q ss_pred             C
Q psy3045         204 Q  204 (267)
Q Consensus       204 ~  204 (267)
                      .
T Consensus       219 ~  219 (256)
T 1nqb_A          219 V  219 (256)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.85  E-value=1.6e-20  Score=137.79  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=108.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceE--EEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRV--KQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.|...|  . ..+.+|++|+|.|.+.+    +.|+|++.......   ...+.  ...+..|.|.+++.+|+|.|+|
T Consensus         7 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            7 RKPSLLAHP--G-PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLR---LIGEHHDGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             CCCEEEEES--C-SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEE---EECEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEEEc--C-CccCCCCcEEEEEeccCCCCEEEEEECCCcCCcce---eeeecCCCCceEEEEeccCCcccCeEEEE
Confidence            467787766  3 67899999999999976    99999743221110   00111  1245689999999999999999


Q ss_pred             EEEcCCC-----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          86 VVNNSVG-----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        86 ~~~~~~~-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      .+.+...     ..+..+.|.|.....   .+...                       ..+. ..+.+|+.++|.|.+.+
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~---~p~i~-----------------------~~p~-~~v~~G~~v~L~C~~~~  133 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYE---KPSLS-----------------------AQPG-PTVLAGENVTLSCSSRS  133 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSC---CCEEE-----------------------EESC-SEECTTCEEEEEEEESS
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCC---CCcee-----------------------cCCC-CccCCCCeEEEEEeCCC
Confidence            9986431     234556677765321   11111                       0011 26788999999999886


Q ss_pred             CCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         161 NPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       161 ~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                       +.+.+.|+|+|..+...          ....|.|.+++  |+|.|+|.|.+.
T Consensus       134 -~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          134 -SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             -CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             -CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence             56789999999877531          14678999898  999999999865

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=136.14  Aligned_cols=126  Identities=24%  Similarity=0.443  Sum_probs=104.7

Q ss_pred             cccCCceEEEecCCCEEEEeEeC-CCCCceEEEEECCccCCCCC------------------CCeEEeccCCCCCCeEEE
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHN------------------EPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~~------------------~~~l~i~~~~~~d~g~y~  197 (267)
                      +...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....                  ...|.|.++..+|+|.|+
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   84 (195)
T 2c5d_C            5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQ   84 (195)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEE
T ss_pred             eccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEE
Confidence            33445666899999999999998 88989999999998876441                  357999999999999999


Q ss_pred             EEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcCCC
Q psy3045         198 CVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       198 C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~~~  265 (267)
                      |.+.+..+.... ...+.|.   .+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+...
T Consensus        85 C~~~~~~~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  151 (195)
T 2c5d_C           85 CLVFLGHQTFVSQPGYVGLE---GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA  151 (195)
T ss_dssp             EEEEETTEEEECCCEEEEEC---CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSS
T ss_pred             EEEEeCCCceecccEEEEEe---cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCC
Confidence            999997655433 3566664   56888777777889999999999999999999 99999999988754

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.85  E-value=5.1e-20  Score=136.20  Aligned_cols=125  Identities=30%  Similarity=0.487  Sum_probs=102.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccC-CCCCCeEEEEEEEcCCCCceE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSV-RKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.++ ..+|+|.|+|.+.|..+....
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~   92 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV   92 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEE
T ss_pred             cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEE
Confidence            44557889999999999999899999999999887643          2356999999 599999999999999887777


Q ss_pred             EEEEEEeccc----CCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         210 SGELKLGGRF----DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       210 ~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      ...+.|....    ..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+
T Consensus        93 ~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~  152 (212)
T 2yd6_A           93 STRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS  152 (212)
T ss_dssp             EEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC---
T ss_pred             EEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc
Confidence            7777776421    2367777777778899999999999999999999999999988653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.85  E-value=3.9e-21  Score=142.27  Aligned_cols=167  Identities=17%  Similarity=0.291  Sum_probs=108.6

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceecc--------ccCCceEEE----EeeEEEEeecc
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVA--------VPLNDRVKQ----VSGTLIIKEAK   76 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~   76 (267)
                      |.+...+  ..+.+.+|++++|.|.+.+     +.|++...+......        .....|+..    .+.+|.|.+++
T Consensus         2 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   79 (213)
T 3r06_A            2 IQMTQSP--SSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE   79 (213)
T ss_dssp             CCEEEEC--SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CeeEeCC--CEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC
Confidence            4455445  6889999999999999988     999985332211100        112334433    23489999999


Q ss_pred             cCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+..+. ......|.|....   ..+...                       ..+....+..|+.+.|.
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~-----------------------~~~~~~~~~~~~~v~l~  133 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRAD---AKPTVS-----------------------IFPPSSEQLGTGSATLV  133 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECCCC---BCCEEE-----------------------EECCCHHHHTTTEEEEE
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEeccC---CCceee-----------------------eeCCCceecCCCCcEEE
Confidence            99999999999887543 2333455552211   111111                       00111133457789999


Q ss_pred             eEeCCCCC--ceEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         156 CKYEGNPV--KTISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       156 C~~~~~p~--~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      |.+.+.++  +.+.|+++|..+...          ..      +.|.+.....+|.|.|+|.|.|......
T Consensus       134 C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          134 CFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA  204 (213)
T ss_dssp             EEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             EEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence            99987643  499999999877532          11      2466777777889999999999875443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.85  E-value=1.1e-19  Score=134.33  Aligned_cols=131  Identities=30%  Similarity=0.502  Sum_probs=106.9

Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEEeccCCC-CCCeEEEEEEEc
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRK-EDKGMYQCVIRN  202 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~-~d~g~y~C~~~~  202 (267)
                      +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|.++.. +|+|.|+|.+.|
T Consensus         7 P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n   86 (212)
T 2yd1_A            7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAEN   86 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEEC
T ss_pred             CEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEe
Confidence            33444556668999999999999999998999999999887522           115799999999 999999999999


Q ss_pred             CCCC-ceEEEEEEEeccc----CCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         203 EQES-AQASGELKLGGRF----DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       203 ~~~~-~~~~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      ..+. ......+.|....    .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+
T Consensus        87 ~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~  154 (212)
T 2yd1_A           87 GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS  154 (212)
T ss_dssp             SSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT
T ss_pred             CCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC
Confidence            8887 5667777776421    1267777777778899999999999999999999999999998753

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.85  E-value=7e-21  Score=148.82  Aligned_cols=165  Identities=13%  Similarity=0.225  Sum_probs=118.1

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      .......|+.+.|.|.+..      +.|++++........ ..........+.|.|..+...|.|.|+|.+.|..+....
T Consensus       122 ~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~-~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  200 (308)
T 4fom_A          122 DSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT-SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDI  200 (308)
T ss_dssp             SCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE-ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE
T ss_pred             ceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc-eeeeecccccccceEEeeeecCCccEEEEEEccCCCCce
Confidence            4566778999999998643      999997443322111 122223334567999999999999999999998776443


Q ss_pred             --EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCc
Q psy3045          97 --ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGK  173 (267)
Q Consensus        97 --~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~  173 (267)
                        .+.|.|..+|.+...+.                            ....+..|+.+.|.|.+.|.|.| .+.|+|++.
T Consensus       201 ~~~~~l~V~~~P~~~~~~~----------------------------~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~  252 (308)
T 4fom_A          201 RYSFILDIQYAPEVSVTGY----------------------------DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDG  252 (308)
T ss_dssp             EEEEECCCCEEEEECCBCC----------------------------CSCEETTCCSCEEECCEEEESCEEEEECCBSSS
T ss_pred             EEeEEEEEecCCeeEEccc----------------------------ceeeeeccccEEEEEEEecCCCCcEEEEEECCe
Confidence              44444544433222211                            11256678999999999999877 799999998


Q ss_pred             cCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         174 PVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       174 ~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+...    +...+.|..++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       253 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          253 QWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             CCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             ECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            77543    34456678899999999999999999988878777776

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.85  E-value=1.2e-19  Score=138.12  Aligned_cols=180  Identities=14%  Similarity=0.216  Sum_probs=110.8

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc---------cCCceEEE------EeeEEEEe
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV---------PLNDRVKQ------VSGTLIIK   73 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~---------~~~~~~~~------~~~~l~i~   73 (267)
                      ..+...+  ..+.+.+|++|+|.|.+.+     +.|++...+.......         ....|+..      ...+|.|.
T Consensus         4 ~~v~q~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   81 (256)
T 3tf7_C            4 QSVTQPD--ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKA   81 (256)
T ss_dssp             CEEECSC--SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEES
T ss_pred             cEEEecC--ceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEEC
Confidence            3455555  6889999999999999977     9999853322211111         11233332      23579999


Q ss_pred             ecccCCCeeEEEEEEcCCCcc----EEEEEEEEEeccccc-cCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          74 EAKVEDSGKYLCVVNNSVGGE----SVETVLTVTAPLAAG-VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      +++.+|+|.|+|.+.+..+..    ...+.|.|....... ......          ........+..+...+....+.+
T Consensus        82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~p~~~~v~~  151 (256)
T 3tf7_C           82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGG----------GGSGGGGSEAAVTQSPRNKVTVT  151 (256)
T ss_dssp             SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC-------------------------------CCEEESCSEEEEET
T ss_pred             CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCc----------ccCCCCcCccEEEecCCEEEEeC
Confidence            999999999999999876532    123455555310000 000000          00000001122223345557789


Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCc--cC-------------------------CCCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGK--PV-------------------------PDHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~--~~-------------------------~~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      |++++|.|.+.+. .+.+.|+++..  .+                         .......|.|.++..+|+|.|.|.|.
T Consensus       152 G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  230 (256)
T 3tf7_C          152 GENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASS  230 (256)
T ss_dssp             TCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEec
Confidence            9999999999876 67899998431  10                         01234579999999999999999999


Q ss_pred             cCCCC
Q psy3045         202 NEQES  206 (267)
Q Consensus       202 ~~~~~  206 (267)
                      |..+.
T Consensus       231 n~~g~  235 (256)
T 3tf7_C          231 DAPGQ  235 (256)
T ss_dssp             EETTE
T ss_pred             CCCCc
Confidence            87654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.84  E-value=1.9e-20  Score=134.69  Aligned_cols=151  Identities=13%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcc--------e-eccccCCceEEE--EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSS--------R-KVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~--------~-~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|.+..      +.|+++++..-        . .....+..|+..  .+++|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            5789999999999999743      99999421100        0 011223356654  45789999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045          86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT  165 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  165 (267)
                      .+.+.. .....+.|.|..++.   .+..                              . ..+..+.|.|.+...|.+.
T Consensus        87 ~v~~~~-~~~~~~~L~V~~~~~---~P~i------------------------------~-~~~~~v~L~C~~~~gp~p~  131 (180)
T 2dru_A           87 RMLHET-EDQWKITMEVYEMVS---KPMI------------------------------Y-WECSNATLTCEVLEGTDVE  131 (180)
T ss_dssp             EEESSS-EEEEEEEEEEECCCC---CCEE------------------------------E-EEGGGTEEEEECSSCTTCE
T ss_pred             EEEcCC-eEEEEEEEEEECCCC---CCEE------------------------------E-ecCCCEEEEEEeCCCCCCE
Confidence            998766 556667777765321   1111                              1 1346699999994348999


Q ss_pred             EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         166 ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       166 ~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +.|++++..+.......|.+..  .+|+|.|+|.|.|..+.....
T Consensus       132 i~W~~~~~~l~~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~  174 (180)
T 2dru_A          132 LKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEM  174 (180)
T ss_dssp             EEEEETTEEEEEESSSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCeECcCCCCCEEEEEE--hhcCccEEEEEecCcCccccc
Confidence            9999999887644456666633  789999999999998765543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=8.9e-20  Score=135.49  Aligned_cols=130  Identities=22%  Similarity=0.468  Sum_probs=108.3

Q ss_pred             ccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCc-eEEEEEE
Q psy3045         136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELK  214 (267)
Q Consensus       136 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~  214 (267)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......|.|.++..+|+|.|+|.+.+..+.. .....+.
T Consensus        20 ~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   99 (218)
T 3k0w_A           20 KITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD   99 (218)
T ss_dssp             CEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred             EEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence            344556667899999999999999999999999999999988888999999999999999999999987643 3345565


Q ss_pred             Eeccc------------CCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         215 LGGRF------------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       215 v~~~~------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      |....            .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..+
T Consensus       100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~  162 (218)
T 3k0w_A          100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE  162 (218)
T ss_dssp             EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC
T ss_pred             EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC
Confidence            54321            1267777777778999999999999999999999999999988654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.84  E-value=2.5e-21  Score=143.12  Aligned_cols=161  Identities=19%  Similarity=0.308  Sum_probs=107.6

Q ss_pred             eEEecCCCeEEEEEEecc---eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE---NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      .+.+.+|++++|.|.+..   +.|+++..+.......        ....|+..    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   88 (211)
T 3tv3_L            9 SASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSL   88 (211)
T ss_dssp             EEEECTTCEEEEEEECCCSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEECCCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEe
Confidence            788999999999999876   9999953332211111        12234432    24579999999999999999999


Q ss_pred             cCCC--ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC--CCc
Q psy3045          89 NSVG--GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN--PVK  164 (267)
Q Consensus        89 ~~~~--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~  164 (267)
                      +..+  .....+.|.|...+  ...+...                       ..+....+..|+.+.|.|.+.+.  |.+
T Consensus        89 ~~~~~~~~~~~~~l~V~~~~--~~~P~v~-----------------------~~~~~~~~~~g~~v~l~C~~~g~~p~~~  143 (211)
T 3tv3_L           89 VGNWDVIFGGGTKLTVLGQP--KAAPSVT-----------------------LFPPSSEELQANKATLVCLISDFYPGAV  143 (211)
T ss_dssp             ETTTEEEECCCEEEEECCSC--CBCCEEE-----------------------EECCCHHHHHTTCEEEEEEEEEEBSSCC
T ss_pred             cCCCceeECCCceEEEeCCC--CcCCeeE-----------------------ecCCchhhhcCCCeEEEEEeeeecCCCe
Confidence            9876  23444556665211  0111111                       00111123369999999999885  357


Q ss_pred             eEEEEECCccCCCC----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         165 TISWMKDGKPVPDH----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       165 ~~~W~~~~~~~~~~----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+.|+++|..+...          +     ...|.|..+..+|.|.|+|.|.|..+....
T Consensus       144 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          144 TVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            99999999877531          1     145778888888999999999998754443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.84  E-value=4.5e-20  Score=140.46  Aligned_cols=176  Identities=16%  Similarity=0.262  Sum_probs=111.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE------
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV------   66 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~------   66 (267)
                      +|.|...+  ..+.+.+|++|+|.|.+.+       +.|++...+....             .......|+...      
T Consensus         6 ~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            6 HQVQLVQS--GAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             -CCEEEEC--CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ceEEEEec--CCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            45565555  7899999999999999865       8999854332111             111223455443      


Q ss_pred             eeEEEEeecccCCCeeEEEEEEcC------------CCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCC
Q psy3045          67 SGTLIIKEAKVEDSGKYLCVVNNS------------VGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP  134 (267)
Q Consensus        67 ~~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  134 (267)
                      ..+|.|.+++.+|+|.|+|.+.+.            .......+.|.|...+.........              ....+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~--------------~~~~~  149 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSG--------------GGGSE  149 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC------------------------CCCC
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccC--------------CCcce
Confidence            246999999999999999999886            2222334456665432110000000              00001


Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCCCC-ceEEEEEC--CccCC---------------------CCCCCeEEeccCCC
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKD--GKPVP---------------------DHNEPVFRIDSVRK  190 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~  190 (267)
                      ..+...+....+.+|++++|.|.+.+.+. +.+.|+++  +..+.                     ......|.|.++..
T Consensus       150 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  229 (256)
T 3juy_B          150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEP  229 (256)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCH
Confidence            12223345568889999999999998775 89999983  22211                     01224599999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy3045         191 EDKGMYQCVIRNEQ  204 (267)
Q Consensus       191 ~d~g~y~C~~~~~~  204 (267)
                      +|+|.|.|.|.+..
T Consensus       230 ~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          230 EDFALYYCQVYGAS  243 (256)
T ss_dssp             GGCSEEEEEECCSS
T ss_pred             hHCEEEEEEEeeCC
Confidence            99999999998853

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.84  E-value=2.2e-20  Score=133.26  Aligned_cols=152  Identities=13%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcce------eccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSR------KVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ..+.+.+|++|+|.|.+..    +.|+++......      .....+..|+..  .+++|.|.+++.+|+|.|+|.+.+.
T Consensus         3 ~~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             cEEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            4678999999999999855    999996431100      001123456554  4578999999999999999999887


Q ss_pred             CCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEE
Q psy3045          91 VGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK  170 (267)
Q Consensus        91 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~  170 (267)
                      .+  ...+.|.|..++.   .+...                              .. .....|.|.+.+.|.+.+.|++
T Consensus        83 ~~--~~~~~L~V~~~~~---~p~i~------------------------------~~-~~~~~L~C~~~~~p~p~i~W~~  126 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVS---KPMIY------------------------------WE-CSNATLTCEVLEGTDVELKLYQ  126 (171)
T ss_dssp             CS--CEEEEEEEECCCC---CCEEE------------------------------EE-TTTTEEEEECSSCSSCEEEEEE
T ss_pred             CC--cEEEEEEEECcCC---CCEEE------------------------------Ee-cCCcEEEEEeCCCCCcEEEEEE
Confidence            76  6667777765422   11111                              11 1113799999998999999999


Q ss_pred             CCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         171 DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       171 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      ++..+.......+.+.  ...|.|.|+|.|.|..+.......
T Consensus       127 ~~~~l~~~~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~  166 (171)
T 1ccz_A          127 GKEHLRSLRQKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEV  166 (171)
T ss_dssp             TTEEEEEESSSEEEEE--CSCCSSCEEEEEEETTEEEEEEEC
T ss_pred             CCEECcCCcceEEEEe--ccCCCceEEEEEEcccCcccceeE
Confidence            9988865555556554  367899999999999877655443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.84  E-value=1.4e-19  Score=137.20  Aligned_cols=177  Identities=16%  Similarity=0.233  Sum_probs=108.5

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecc
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAK   76 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~   76 (267)
                      +.+...+  ..+.+.+|++|+|.|.+.+     +.|+++..+.....        ......|+...    ..+|.|.+++
T Consensus         5 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   82 (250)
T 3esu_F            5 IVLIQST--SSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLE   82 (250)
T ss_dssp             CCEECSC--SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eeEEecC--CEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCC
Confidence            3455555  6888999999999999987     99999643221111        11123344322    2379999999


Q ss_pred             cCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+..+. ......|.|...+.........   .+..       ....+......+....+.+|+++.|.
T Consensus        83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~v~~G~~v~L~  152 (250)
T 3esu_F           83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSG---GGGS-------GGGGSEVQLQQSGPELVKPGASVKIS  152 (250)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC----------------------------------CEECCCEEECTTCCEEEE
T ss_pred             hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccc---cccc-------cCcccceEEecCCceEEcCCceEEEE
Confidence            99999999999887554 2233455554421100000000   0000       00000111122334578899999999


Q ss_pred             eEeCCCC--CceEEEEEC--CccCCC----------------------------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         156 CKYEGNP--VKTISWMKD--GKPVPD----------------------------HNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       156 C~~~~~p--~~~~~W~~~--~~~~~~----------------------------~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      |.+.+.+  .+.+.|+++  +..+..                            .....|.|.++..+|+|.|.|.+.+
T Consensus       153 C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          153 CKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            9998876  789999997  433310                            1123699999999999999999997

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.84  E-value=8.8e-20  Score=137.30  Aligned_cols=165  Identities=16%  Similarity=0.261  Sum_probs=103.8

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceec-----------cccCCceEEEE-----eeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKV-----------AVPLNDRVKQV-----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....    +.|+++..+.....           ......|+...     ..+|.|.+++.+|+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A            8 RNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             SEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             cceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            6789999999999999322    99999633221110           01123344322     3489999999999999


Q ss_pred             EEEEEEcCCCcc-----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          83 YLCVVNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        83 Y~C~~~~~~~~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      |+|.+.+..+..     .....|.|...+.....+...                 ....+...+....+.+|+++.|.|.
T Consensus        88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~-----------------~~~~v~~~p~~~~v~~G~~v~L~C~  150 (238)
T 2p1y_A           88 YFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAK-----------------KDGQVRQSPQSLTVWEGETAILNCS  150 (238)
T ss_dssp             EEEEEEC------CEEECCCEEEEEECCCHHHHHHHHH-----------------HHTCCEEECSEEEEETTSCEEEEEE
T ss_pred             EEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCccc-----------------ceeeEEccCceEEEeCCCeEEEEEE
Confidence            999999875421     123355555422100000000                 0001111233447889999999999


Q ss_pred             eCCCCCceEEEEECCc--cCC-----------------------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         158 YEGNPVKTISWMKDGK--PVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       158 ~~~~p~~~~~W~~~~~--~~~-----------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +.+.|.+.+.|++++.  .+.                       ......|.|.++..+|+|.|+|.|.|..
T Consensus       151 ~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          151 YENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999889999999642  110                       1123579999999999999999999873

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.84  E-value=5.1e-21  Score=143.34  Aligned_cols=155  Identities=21%  Similarity=0.347  Sum_probs=109.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcc---ee----ccccCCceEE----------E-EeeEEEEeecccC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSS---RK----VAVPLNDRVK----------Q-VSGTLIIKEAKVE   78 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~---~~----~~~~~~~~~~----------~-~~~~l~i~~~~~~   78 (267)
                      ..+.+.+|+++.|.|.+.+      +.|++++....   ..    ....+..++.          . .++.|.|.+++.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~   87 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVG   87 (231)
T ss_dssp             SEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGG
T ss_pred             CcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcc
Confidence            6789999999999999886      99998643311   00    0001122332          2 2245999999999


Q ss_pred             CCeeEEEEEEcCC-CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE-EEEe
Q psy3045          79 DSGKYLCVVNNSV-GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA-QFTC  156 (267)
Q Consensus        79 d~G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v-~l~C  156 (267)
                      |+|.|+|.+.+.. +.....+.|.|...+..   +...                       ..+....+.+|+.+ .|.|
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~---~~~~-----------------------~~~~~~~~~~g~~~~~l~C  141 (231)
T 2pet_A           88 DERDYVCVVRAGAAGTAEATARLNVFAKPEA---TEVS-----------------------PNKGTLSVMEDSAQEIATC  141 (231)
T ss_dssp             GCEEEEEEEECGGGCEEEEEEEEEEEBCCCC---CEEE-----------------------ECCSSCCTTCCSEEEEEEE
T ss_pred             cCceEEEEEEecCCCceEEEEEEEEEecCCC---cEEe-----------------------cCCcceeecCCCceEEEEE
Confidence            9999999999887 66777788888765432   1111                       01112245578887 9999


Q ss_pred             Ee-CCCCCceEEEEECCccCCCCC----------------------CCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         157 KY-EGNPVKTISWMKDGKPVPDHN----------------------EPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       157 ~~-~~~p~~~~~W~~~~~~~~~~~----------------------~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+ .+.|.+.+.|++++..+....                      .+.|.+.....+|.|.|+|.|.|.
T Consensus       142 ~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          142 NSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            99 788999999999998876543                      144777655566699999999995

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.84  E-value=4.5e-20  Score=144.64  Aligned_cols=176  Identities=24%  Similarity=0.306  Sum_probs=118.0

Q ss_pred             eEEecCCCeEEEEEEecc---------------eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045          24 RFKKPGGESFALLCEAQE---------------NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------------~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ...+.+|+.+.|.|.+.+               +.|++++....      ...++..    ....|.|.+++.+|+|.|+
T Consensus       107 ~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  180 (317)
T 2y25_A          107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR------YSDRVKTGVTGEQIWLQINEPTPNDKGKYV  180 (317)
T ss_dssp             HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCC------CCSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             ceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECC------CCCCeEEeccCCEEEEEECcCCcccCeeEE
Confidence            344567777777777642               89999643221      1222222    2246999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccccccCC---ceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLAAGVEP---TVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~~~~~~---~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      |.+.|..+.....+.+.|..........   ......           ...++......+....+..|+.+.|.|.+.+.
T Consensus       181 C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~  249 (317)
T 2y25_A          181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA-----------EKNRARVLGGLPDVVTIQEGKALNLTCNVWGD  249 (317)
T ss_dssp             EEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHH-----------TTTSCEEEEBCCSEEEEETTSBBCEEEEEECS
T ss_pred             EEEEeCCceEEEEEEEeeeeccccchhhcccCCcccC-----------cCCCCcccccCCccEEEEcCCEEEEEEEEecC
Confidence            9999988877766666543210000000   000000           00011111122334578899999999999999


Q ss_pred             CCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         162 PVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       250 p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          250 PPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             SCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            999999999998875432          1389999999999999999999999988888887775

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.84  E-value=4e-20  Score=137.12  Aligned_cols=161  Identities=18%  Similarity=0.323  Sum_probs=105.6

Q ss_pred             eeEEecCCCeEEEEEEe-cc------eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEA-QE------NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-~~------~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y   83 (267)
                      ....+.+|++++|.|.+ .+      +.|++++.+.....        ......|+...    ..+|.|.+++.+|+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (216)
T 2xzc_L            8 PSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (216)
T ss_dssp             SEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence            67899999999999995 32      99999643322110        01123344432    34899999999999999


Q ss_pred             EEEEEcCCCc--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          84 LCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        84 ~C~~~~~~~~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      +|.+.+..+.  ......|.|....   ..+....                      ..+.. ....|+.+.|.|.+.+.
T Consensus        88 ~C~~~~~~~~~~~~~~~~l~V~~~~---~~P~v~~----------------------~~~~~-~~~~g~~v~L~C~~~g~  141 (216)
T 2xzc_L           88 YCGTWDSSLNPVFGGGTKLEIKRTV---AAPSVFI----------------------FPPSD-EQLKSGTASVVCLLNNF  141 (216)
T ss_dssp             EEEEECTTSCEEEBCCEEEEECCCC---BCCEEEE----------------------ECCCH-HHHHTTEEEEEEEEEEE
T ss_pred             EEEEEeCCCcceECCCEEEEEcCCC---CCCceEE----------------------eCCCh-hhccCCcEEEEEEEEeE
Confidence            9999988761  1223455553211   1111110                      00100 12358899999999884


Q ss_pred             -CCc-eEEEEECCccCCCC-----------CC-----CeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         162 -PVK-TISWMKDGKPVPDH-----------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       162 -p~~-~~~W~~~~~~~~~~-----------~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                       |.+ .+.|+++|..+...           +.     +.|.|.....+|.|.|+|.|.|.......
T Consensus       142 ~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          142 YPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             BSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence             554 89999999876533           11     26888888899999999999998755443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.84  E-value=6.4e-20  Score=139.41  Aligned_cols=168  Identities=18%  Similarity=0.231  Sum_probs=107.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      .++.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      ..+|.|.+++
T Consensus         9 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   88 (253)
T 3uzq_A            9 GAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT   88 (253)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC
Confidence            5788999999999999865       89999533222111             11123444432      2359999999


Q ss_pred             cCCCeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+..+.. .....|.|.............              ...++..+...+....+.+|++++|.
T Consensus        89 ~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~--------------~~~~~~~v~~~p~~~~v~~G~~v~L~  154 (253)
T 3uzq_A           89 SGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSG--------------GGGSELVMTQTPASLAVSLGQRATIS  154 (253)
T ss_dssp             GGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC-----------------------CCEEEECSEEEECTTSCEEEE
T ss_pred             cccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccC--------------CCcccceEECcCCeEEEeCCCCEEEE
Confidence            999999999999865442 344556665321000000000              00011112223445588899999999


Q ss_pred             eEeCCCCCc----eEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         156 CKYEGNPVK----TISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       156 C~~~~~p~~----~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      |.+.+.+.+    .+.|++++  ..+.                     ......|.|.+++.+|+|.|.|.+.|..
T Consensus       155 C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          155 CRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             EEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            999998766    99999852  2211                     0112369999999999999999999854

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.84  E-value=5.7e-20  Score=134.25  Aligned_cols=129  Identities=22%  Similarity=0.335  Sum_probs=101.6

Q ss_pred             ccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------C--CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------E--PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       138 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~--~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         .  ..|.|.++..+|+|.|+|.+.|..+.
T Consensus         8 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~   87 (197)
T 2j8h_A            8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS   87 (197)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEE
T ss_pred             EEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCc
Confidence            344455688999999999999999999999999998875432         1  28999999999999999999998877


Q ss_pred             ceEEEEEEEeccc--CCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         207 AQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       207 ~~~~~~l~v~~~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      ......+.|....  ..|.....+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+.
T Consensus        88 ~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~  149 (197)
T 2j8h_A           88 VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG  149 (197)
T ss_dssp             EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSS
T ss_pred             eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCC
Confidence            7667777765311  11222222345678899999999999999999999999999887543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.84  E-value=1e-20  Score=142.27  Aligned_cols=170  Identities=16%  Similarity=0.282  Sum_probs=112.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEE----EeeEEEEeecc
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQ----VSGTLIIKEAK   76 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~----~~~~l~i~~~~   76 (267)
                      +.+...+  ..+.+.+|++++|.|.+.+     +.|++...+.....        ......|+..    .+.+|.|.+++
T Consensus        25 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  102 (237)
T 3sob_L           25 IQMTQSP--SSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ  102 (237)
T ss_dssp             CCEEEEC--SEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ceEEeCC--CeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCC
Confidence            4455445  6789999999999999988     99999643322110        1112334432    24589999999


Q ss_pred             cCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+..+. ......+.|....   ..+....                       .+....+..|+.+.|.
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~~-----------------------~~~~~~~~~g~~v~l~  156 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKRTV---AAPSVFI-----------------------FPPSDEQLKSGTASVV  156 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEECCC---BCCEEEE-----------------------ECCCHHHHHHTEEEEE
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEecCC---CCCceEE-----------------------eCCChhhccCCceEEE
Confidence            99999999999876653 2233455554311   1111110                       0011123358889999


Q ss_pred             eEeCCC-C-CceEEEEECCccCCCC----------C------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         156 CKYEGN-P-VKTISWMKDGKPVPDH----------N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       156 C~~~~~-p-~~~~~W~~~~~~~~~~----------~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      |.+.+. | .+.+.|+++|..+...          .      .+.|.+.....+|.|.|+|.|.|.......+.
T Consensus       157 C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  230 (237)
T 3sob_L          157 CLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK  230 (237)
T ss_dssp             EEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred             EEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceee
Confidence            999874 4 5899999999877532          1      13577888888899999999999876544433

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=1.1e-20  Score=141.97  Aligned_cols=168  Identities=18%  Similarity=0.307  Sum_probs=107.7

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee--------ccccCCceEEEE----eeEEEEee
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK--------VAVPLNDRVKQV----SGTLIIKE   74 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~--------~~~~~~~~~~~~----~~~l~i~~   74 (267)
                      +.+.. |  ....+.+|++++|.|.+.+       +.|+++..+....        .......|+...    ..+|.|.+
T Consensus        21 ~~v~~-p--~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   97 (234)
T 2j6e_L           21 SVLTQ-P--PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISG   97 (234)
T ss_dssp             CCCBC-C--SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEES
T ss_pred             cEEeC-C--CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECC
Confidence            44444 4  6788999999999999875       8999964332110        001123344332    34899999


Q ss_pred             cccCCCeeEEEEEEcCCCc---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          75 AKVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      ++.+|+|.|+|.+.+..+.   ....+.|.|...+.  .                      +|......+ ......|+.
T Consensus        98 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--~----------------------~p~v~~~~~-~~~~~~g~~  152 (234)
T 2j6e_L           98 LRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPK--A----------------------APSVTLFPP-SSEELQANK  152 (234)
T ss_dssp             CCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCC--C----------------------CCCCCEECC-CHHHHTTSC
T ss_pred             CCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCC--C----------------------CCcccccCC-ChhHhcCCc
Confidence            9999999999999987762   11122333321110  0                      010000011 112335889


Q ss_pred             EEEEeEeCCCC-C-ceEEEEECCccCCCC---------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         152 AQFTCKYEGNP-V-KTISWMKDGKPVPDH---------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       152 v~l~C~~~~~p-~-~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      ++|.|.+.+.+ + +.+.|+++|..+...               ..+.|.|.....+|.|.|+|.|.|.......
T Consensus       153 v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          153 ATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             CCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             eEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence            99999999864 3 499999999876421               1135788888899999999999998765443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=8e-21  Score=144.45  Aligned_cols=167  Identities=19%  Similarity=0.303  Sum_probs=110.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----------eeeeecccCccee--------ccccCCceEEE----EeeEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRK--------VAVPLNDRVKQ----VSGTL   70 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~--------~~~~~~~~~~~----~~~~l   70 (267)
                      +|.+...+  ..+.+.+|++++|.|.+.+          +.|+++.++....        .......|+..    ...+|
T Consensus        38 ~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L  115 (254)
T 2c1o_A           38 ELVMTQSP--LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTL  115 (254)
T ss_dssp             CCCEEEEC--SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             ceeEEeCC--ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEE
Confidence            55666555  6899999999999999853          8899864333211        11112244433    23489


Q ss_pred             EEeecccCCCeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecC
Q psy3045          71 IIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG  149 (267)
Q Consensus        71 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g  149 (267)
                      .|.+++.+|+|.|+|.+.+..+.. .....+.|....   ..+....                      ..+ ......|
T Consensus       116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~----------------------~~~-~~~~~~g  169 (254)
T 2c1o_A          116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD---AAPTVSI----------------------FPP-SSEQLTS  169 (254)
T ss_dssp             EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC---BCCEEEE----------------------ECC-CHHHHHT
T ss_pred             EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC---CCCeeEe----------------------ecC-ChhhccC
Confidence            999999999999999999875532 222345553211   0111110                      000 0012357


Q ss_pred             CCEEEEeEeCCC-CC-ceEEEEECCccCCCC-----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         150 RPAQFTCKYEGN-PV-KTISWMKDGKPVPDH-----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       150 ~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~~-----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +.+.|.|.+.+. |. +.+.|+++|..+...           +     .+.|.|..+..+|+|.|+|.|.|.....
T Consensus       170 ~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          170 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            899999999884 43 479999999876543           1     2468899999999999999999987654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.84  E-value=1.7e-20  Score=149.14  Aligned_cols=165  Identities=18%  Similarity=0.251  Sum_probs=94.4

Q ss_pred             eeEEecCCCeEEEEEEe-----cc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC-
Q psy3045          23 IRFKKPGGESFALLCEA-----QE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV-   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-----~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-   91 (267)
                      ....+.+|+++.|.|.+     .+     +.|++++..      +....++...+..|.|.+++.+|+|.|+|.+.|.. 
T Consensus       128 ~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~------l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  201 (349)
T 4dep_C          128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK------IQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN  201 (349)
T ss_dssp             EEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE------CCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEET
T ss_pred             cceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEE------CCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeC
Confidence            46788999999999984     33     999996331      12224444555789999999999999999999987 


Q ss_pred             Ccc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCce--EEEecCCCEEEEeEeC----CCC
Q psy3045          92 GGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV--QTIDFGRPAQFTCKYE----GNP  162 (267)
Q Consensus        92 ~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~--~~~~~g~~v~l~C~~~----~~p  162 (267)
                      +..   ...+.|.|...+.....+...                       .....  ..+..|+.+.|.|.+.    +.|
T Consensus       202 g~~~~~~~~~~l~v~~~~~~~~~p~i~-----------------------~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p  258 (349)
T 4dep_C          202 GRTFHLTRTLTVKVVGSPKNAVPPVIH-----------------------SPNDHVVYEKEPGEELLIPCTVYFSFLMDS  258 (349)
T ss_dssp             TEEEEEEEEEEEEEECCGGGCCSCEEC---------------------------------------CCCEEEEECCCTTC
T ss_pred             CEEEEEEEEEEEEEEccCCCCCCCeEe-----------------------cCCCceeEEEecCCcEEEEEEEEEccCCCC
Confidence            333   455566665532211111111                       00111  1567899999999998    568


Q ss_pred             CceEEEEECCccCCCC----------------C---CCeEEeccCCCCCC-eEEEEEEEcCCCCceEEEEEEEe
Q psy3045         163 VKTISWMKDGKPVPDH----------------N---EPVFRIDSVRKEDK-GMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~----------------~---~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.+.|++++..+...                .   ...|.|.++..+|. |.|+|.|.|..|....++.|.+.
T Consensus       259 ~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             CCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             CCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            8999999999887541                1   12388999999999 99999999999988888777775

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.83  E-value=1.3e-19  Score=130.71  Aligned_cols=124  Identities=26%  Similarity=0.510  Sum_probs=104.0

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++.+|+|.|+|.+.+..+..
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   86 (182)
T 1rhf_A            7 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   86 (182)
T ss_dssp             CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             eCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcE
Confidence            34555688999999999999998989999999998876542           2579999999999999999999986543


Q ss_pred             -eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcCCC
Q psy3045         208 -QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       208 -~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~~~  265 (267)
                       .....+.|.   .+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+...
T Consensus        87 ~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  143 (182)
T 1rhf_A           87 ISQPVWLTVE---GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP  143 (182)
T ss_dssp             ECCCEEEEEE---CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS
T ss_pred             EEEEEEEEEe---cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC
Confidence             345666665   57888887877889999999999999999999 99999999988653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.83  E-value=9.7e-21  Score=140.59  Aligned_cols=160  Identities=19%  Similarity=0.311  Sum_probs=103.8

Q ss_pred             eEEecCCCeEEEEEEecc------eeeeecccCccee------------ccccCCceEEE----EeeEEEEeecccCCCe
Q psy3045          24 RFKKPGGESFALLCEAQE------NMWFKFIEGSSRK------------VAVPLNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~------------~~~~~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      .+.+.+|++++|.|.+.+      +.|++...+....            .......|+..    .+.+|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            788999999999999876      8999953222111            11112234433    2457999999999999


Q ss_pred             eEEEEEEcCCC-----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          82 KYLCVVNNSVG-----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        82 ~Y~C~~~~~~~-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .|+|.+.+..+     .....+.|.|...+.  ..+....                       .+.......|+.+.|.|
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~~~~-----------------------~~~~~~~~~~~~v~L~C  143 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPK--STPTLTV-----------------------FPPSSEELKENKATLVC  143 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCC--BCCEEEE-----------------------ECCCHHHHHTTEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCC--CCceEEe-----------------------eCCCcccccCCcEEEEE
Confidence            99999998765     123345566653211  1111110                       00111334578899999


Q ss_pred             EeCC-CCCc-eEEEEECCccCCCCC--------C------CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         157 KYEG-NPVK-TISWMKDGKPVPDHN--------E------PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       157 ~~~~-~p~~-~~~W~~~~~~~~~~~--------~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .+.+ .|.+ .+.|+++|..+....        .      +.|.+.....+|.|.|+|.|.|..+...
T Consensus       144 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          144 LISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             EEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             EECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            9988 4666 899999998875410        1      2366777777789999999999875443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.83  E-value=6.6e-20  Score=139.65  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=108.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ....+.+|++|+|.|.+.+       +.|+++..+.....            ......|+...      ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            4568999999999999874       89999643221111            01123455432      34899999999


Q ss_pred             CCCeeEEEEEEcCCC-------cc--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          78 EDSGKYLCVVNNSVG-------GE--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~-------~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      +|+|.|+|.+.+..|       ..  ...+.|.|...+........     +         ....+..+...+....+.+
T Consensus        88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~-----~---------~~~~~~~~~~~p~~~~v~~  153 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGS-----G---------GGGSDIKLTQSPSLLSASV  153 (257)
T ss_dssp             TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSS-----C---------CCCCEECSCEETSEECCCT
T ss_pred             ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCcccccccc-----C---------CCccceEEEccCCEEEEcC
Confidence            999999999998754       11  12345666543210000000     0         0000111112234446888


Q ss_pred             CCCEEEEeEeCCCCCceEEEEE--CCccCC-------------C--------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMK--DGKPVP-------------D--------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~--~~~~~~-------------~--------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      |++++|.|.+.+.+.+.+.|++  ++..+.             .        .....|.|.++..+|+|.|.|.|.|..
T Consensus       154 G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          154 GDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            9999999999998888999999  555431             0        122479999999999999999999864

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.83  E-value=1.8e-19  Score=137.22  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=105.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc------------ccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA------------VPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~------------~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ....+.+|++|+|.|.+.+       +.|++...+......            .....|+...      ..+|.|.+++.
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   95 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSS   95 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCCh
Confidence            5678999999999999765       899995332221111            1123444432      23799999999


Q ss_pred             CCCeeEEEEEEcCCCc----cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEE
Q psy3045          78 EDSGKYLCVVNNSVGG----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQ  153 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~  153 (267)
                      +|+|.|+|.+.+..+.    ....+.|.|...........               ....++..+...+....+.+|++++
T Consensus        96 ~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~---------------~~~~~~~~~~~~p~~~~v~~G~~v~  160 (257)
T 3gkz_A           96 EDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGS---------------GGGGSQIVLTQSPAIMSASPGEKVT  160 (257)
T ss_dssp             GGCEEEEEEEECTTCTTCEEECCCEEEEEC---------C---------------TTCCCCCCEECSCSEEEECTTCCEE
T ss_pred             hhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhccccc---------------CCCccceEEEcCCceEEEeCCCcEE
Confidence            9999999999986221    12334555554311000000               0000112222334456889999999


Q ss_pred             EEeEeCCCCCc-eEEEEEC--CccCCC---------------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         154 FTCKYEGNPVK-TISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       154 l~C~~~~~p~~-~~~W~~~--~~~~~~---------------------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      |.|.+.+.+.+ .+.|+++  +..+..                     .....|.|.+++.+|+|.|.|.+.+..
T Consensus       161 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          161 LTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             EEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            99999988766 9999984  222210                     022459999999999999999998743

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.83  E-value=1.6e-19  Score=129.78  Aligned_cols=156  Identities=17%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             eeEEecCCCeEEEEEEe-c--c----eeeeecccCcceec------cccCCceEEE-EeeEEEEeecccCCCeeEEEEEE
Q psy3045          23 IRFKKPGGESFALLCEA-Q--E----NMWFKFIEGSSRKV------AVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-~--~----~~W~~~~~~~~~~~------~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ..+.+.+|++|+|.|.. .  .    +.|++..++.....      ......|+.. .+++|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence            57889999999999943 2  1    99999211221100      0012344433 45689999999999999999999


Q ss_pred             cCCCccE--EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceE
Q psy3045          89 NSVGGES--VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI  166 (267)
Q Consensus        89 ~~~~~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~  166 (267)
                      +..|...  ..+.|.|..+..   .|..                              .. .+..+.|.|.+.+.|.+.+
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~---~P~i------------------------------~~-~~~~v~L~C~~~~~p~~~~  132 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVS---KPKI------------------------------SW-TCINTTLTCEVMNGTDPEL  132 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCC---CCEE------------------------------EE-ETTTTEEEEECSSCSSCEE
T ss_pred             eCCCceeEEEEEEEEEcCcCC---CCEE------------------------------EE-ccCcEEEEeEccCCCCCEE
Confidence            9887643  456677765321   1111                              11 2447999999999888999


Q ss_pred             EEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       167 ~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .|+++|..+ ......+.+.. ..+|.|.|+|.|.|..+.......+.
T Consensus       133 ~W~~~g~~l-~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          133 NLYQDGKHL-KLSQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEEESSCEE-EEESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEECCEEC-CCCCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            999999888 33344555443 47899999999999998776665543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.83  E-value=2e-20  Score=139.12  Aligned_cols=168  Identities=20%  Similarity=0.246  Sum_probs=110.3

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceec----------cccCCce-----------EEEEeeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKV----------AVPLNDR-----------VKQVSGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~----------~~~~~~~-----------~~~~~~~l~i~   73 (267)
                      +++.+..|++|+|.|.+.+        +.|+|++.......          ......+           ....+.+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            4678899999999999876        78999643221100          0011111           11234679999


Q ss_pred             ecccCCCeeEEEEEEcCCCccE-EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          74 EAKVEDSGKYLCVVNNSVGGES-VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      +++.+|+|.|+|.+.+..+... ....+.+...+.....+                             .......++.+
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~  139 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEA-----------------------------QEVTIGPQSVA  139 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEE-----------------------------CCBCCSSSCEE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecc-----------------------------cceeecceeee
Confidence            9999999999999998776543 33334343322211111                             01134456667


Q ss_pred             EEEeEeC-CCCCceEEEEECCccCCC-------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEeccc
Q psy3045         153 QFTCKYE-GNPVKTISWMKDGKPVPD-------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF  219 (267)
Q Consensus       153 ~l~C~~~-~~p~~~~~W~~~~~~~~~-------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  219 (267)
                      .+.|.+. +.|++.+.|++++..+..       .+     .+.|.|..+..+|+|.|+|.|.|..+....+..+.+.+.|
T Consensus       140 ~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          140 VARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             eeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            7777654 567889999998765421       11     2369999999999999999999998887777767666544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.83  E-value=1.5e-20  Score=142.94  Aligned_cols=159  Identities=18%  Similarity=0.292  Sum_probs=90.0

Q ss_pred             cccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          75 AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      ++..|+|.|+|.|.   |.......+.+...+.                             +...+....+.+|+++.|
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~-----------------------------~~~~p~~~~v~~G~~v~L   58 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELV-----------------------------MTQSPLTLSVTIGQPASI   58 (254)
T ss_dssp             ------------------------------CCC-----------------------------EEEECSEEEECTTSCEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeecee-----------------------------EEeCCceEEecCCCcEEE
Confidence            67899999999997   3322222222222111                             111234458889999999


Q ss_pred             EeEeCCCC-----CceEEEEECC--ccCC----------C-----------CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         155 TCKYEGNP-----VKTISWMKDG--KPVP----------D-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       155 ~C~~~~~p-----~~~~~W~~~~--~~~~----------~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .|.+.+.+     .+.+.|++++  ..+.          .           .....|.|.+++.+|+|.|.|.|.+..+.
T Consensus        59 ~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  138 (254)
T 2c1o_A           59 SCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPP  138 (254)
T ss_dssp             EEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSC
T ss_pred             EeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcce
Confidence            99999887     3899999843  2210          0           02237999999999999999999987543


Q ss_pred             ce-EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCCC
Q psy3045         207 AQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA  265 (267)
Q Consensus       207 ~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~~  265 (267)
                      .. ....+.+.....+|.+...+.......|+.+.|.|.+.|.+++  .+.|+++|+.+..+
T Consensus       139 ~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  200 (254)
T 2c1o_A          139 TFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  200 (254)
T ss_dssp             EEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTT
T ss_pred             EecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCc
Confidence            21 1234556543346777664433334468899999999985443  69999999987654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.83  E-value=1.7e-20  Score=138.78  Aligned_cols=159  Identities=23%  Similarity=0.301  Sum_probs=104.1

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~~~d~G~   82 (267)
                      ....+.+|++++|.|.+.+        +.|+++..+.....        ......|+...    ..+|.|.+++.+|+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   87 (212)
T 1q0x_L            8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAI   87 (212)
T ss_dssp             SEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEE
Confidence            6889999999999999764        89999643322110        01123444332    3489999999999999


Q ss_pred             EEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          83 YLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        83 Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      |+|.+.+..+.. .....|.|.....  ..+....                      . +....+..|+.+.|.|.+.+.
T Consensus        88 Y~C~~~~~~~~~~~~~~~l~V~~~~~--~~P~v~~----------------------~-~~~~~~~~g~~v~L~C~~~g~  142 (212)
T 1q0x_L           88 YFCALWSNNKLVFGGGTKLTVLGQPK--SSPTVTL----------------------F-PPSSEELSTAKATLVCTITDF  142 (212)
T ss_dssp             EEEEEECSSCEEECCCEEEEECCSCC--BCCEEEE----------------------E-CCCHHHHTTTEEEEEEEEEEE
T ss_pred             EEEEEecCchhhcCCCeEEEEecCCC--CCCeeEE----------------------e-CCCHHHccCCcEEEEEEEEEE
Confidence            999999876532 2233455532110  1111110                      0 001123358899999999885


Q ss_pred             C-Cc-eEEEEECCccCCCC----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         162 P-VK-TISWMKDGKPVPDH----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       162 p-~~-~~~W~~~~~~~~~~----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      + ++ .+.|+++|..+...          +     ...|.|.....+|.|.|+|.|.|....
T Consensus       143 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          143 YPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             BSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             eCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            4 33 89999999876432          1     125778888888999999999997643

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=140.04  Aligned_cols=155  Identities=14%  Similarity=0.177  Sum_probs=108.4

Q ss_pred             EEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc-EEEEE
Q psy3045          25 FKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETV   99 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~   99 (267)
                      ..+.+|+++.|.|.+..    +.|+++.++...........       .+.    ...|+|.|+|.+.+..+.. +....
T Consensus       105 ~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~-------~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~  173 (289)
T 3mjg_X          105 IFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQR-------GFS----GIFEDRSYICKTTIGDREVDSDAYY  173 (289)
T ss_dssp             EEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCEETTT-------EEE----ECCCSSEEEEEEEETTEEEECCCEE
T ss_pred             EEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceeecCCc-------Cee----eeccCcEEEEEEEeCCceeeeeeEE
Confidence            78999999999999987    89988643332211111111       111    3679999999998766542 33344


Q ss_pred             EEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-
Q psy3045         100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-  178 (267)
Q Consensus       100 l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-  178 (267)
                      +.|.....    +...                       ..+....+.+|+.+.|.|.+.+.|.+.+.|++++...... 
T Consensus       174 l~v~~~~~----p~i~-----------------------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~  226 (289)
T 3mjg_X          174 VYRLQVSS----INVS-----------------------VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV  226 (289)
T ss_dssp             EEECCCCC----CCCE-----------------------EEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC
T ss_pred             EEecCCCC----CCcE-----------------------EeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc
Confidence            55443211    1000                       1112236788999999999999999999999877654321 


Q ss_pred             -------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         179 -------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       179 -------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                                   ....|.|.++..+|+|.|+|.|.|..|....+..|.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             CCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             cccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence                         226899999999999999999999999999999888874

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.83  E-value=2e-20  Score=143.63  Aligned_cols=205  Identities=15%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      ....|.+|+++.|.|.+.-     +.|.-......    .. ..+  .....+.+.+++.  .|.|+|.+.......+..
T Consensus         7 ~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~----~~-~~g--~~~~~~~l~~v~~--~~~y~C~~~~~~~~~~~~   77 (291)
T 1mq8_A            7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKE----LL-LPG--NNRKVYELSNVQE--DSQPMCYSNCPDGQSTAK   77 (291)
T ss_dssp             SEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCC----CC-CSC--SSEEEEEEESCCS--CCCCEEEEECSSCEEEEE
T ss_pred             CccEEcCCCeEEEEEeCCCCCCccceEEecCCCcc----cc-cCC--CceEEEEEEeccc--CCeEEEEEEcCCccEEEE
Confidence            5789999999999999875     67753111110    00 010  0112567888774  356999997544345666


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CCc--eEEEEECCcc
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVK--TISWMKDGKP  174 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~~~~~~  174 (267)
                      +.|.|..+|......                            +....+.+|+.++|.|.+.+. |..  .|+|+|+++.
T Consensus        78 v~l~V~~~P~~v~I~----------------------------~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~  129 (291)
T 1mq8_A           78 TFLTVYWTPERVELA----------------------------PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE  129 (291)
T ss_dssp             CEEEECBCCSCCCBC----------------------------CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSE
T ss_pred             EEEEEecCCCCCEEe----------------------------cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEE
Confidence            677777654321111                            000146779999999999876 433  6899999987


Q ss_pred             CCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCC-c-----eEEEEEEEecccCCCeeecCCceeEEecCCcEEEE
Q psy3045         175 VPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQES-A-----QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK  242 (267)
Q Consensus       175 ~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~-~-----~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~  242 (267)
                      +....      ...+.+.....++.+.|+|.|.+..+. .     ..+....+.+.+.|+..........+.+|+.++|.
T Consensus       130 l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~  209 (291)
T 1mq8_A          130 LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV  209 (291)
T ss_dssp             EEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------
T ss_pred             eecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEE
Confidence            64221      234555555555666999999987542 1     11222233333333221111112367899999999


Q ss_pred             EEeecCCCC---cEEEEECCEEcCC
Q psy3045         243 CIASGNPTP---EISWYLDGKKLVN  264 (267)
Q Consensus       243 C~~~~~p~~---~i~W~~~~~~l~~  264 (267)
                      |.+.|.+++   .+.|++||+.+..
T Consensus       210 C~~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          210 CSLDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             -------------------------
T ss_pred             EEcCCCCCCcccEEEEEECCEecCc
Confidence            999998665   6999999998863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.83  E-value=2e-20  Score=137.48  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=98.9

Q ss_pred             ecCCCeEEEEEEecc--eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          27 KPGGESFALLCEAQE--NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        27 v~~g~~v~l~C~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +.+|++++|.|.+..  +.|+|++...  ...       ...+.+|.|.+++.+|+|.|+|.+.+.. .  ..+.|.|..
T Consensus        15 ~~~G~~v~L~C~~p~~~i~W~k~g~~l--~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDAEAKNITWFKDGKMI--GFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECSCSSEEEEEETTEEE--EEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEEEEC
T ss_pred             ecCCCeEEEEEcCCCCEEEEEECCEEC--CCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEEEEE
Confidence            468999999999833  9999963211  110       1134579999999999999999965422 2  223344331


Q ss_pred             ccccccCCc---------eEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccC
Q psy3045         105 PLAAGVEPT---------VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV  175 (267)
Q Consensus       105 ~~~~~~~~~---------~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~  175 (267)
                      .........         ......+...       ..++..+...+ .....+|+.+.|.|.  +.|.+.+.|++++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDG-------NEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNI  152 (204)
T ss_dssp             -------------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEE
T ss_pred             eccccccccccccccccccccccccccc-------cccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEEC
Confidence            000000000         0000000000       00000111111 112237999999998  7788899999999876


Q ss_pred             CCC--------CCCeEEeccC-CCCCCeEEEEEEEcCCCCc-eEEEEEEE
Q psy3045         176 PDH--------NEPVFRIDSV-RKEDKGMYQCVIRNEQESA-QASGELKL  215 (267)
Q Consensus       176 ~~~--------~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~-~~~~~l~v  215 (267)
                      ...        ....|.|.++ ..+|+|.|+|.|.|..+.. ...+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          153 GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             SCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             CCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            432        3578999999 9999999999999998852 33444443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.83  E-value=1e-19  Score=138.54  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=106.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|.+.+       +.|++...+......             .....|+...      ..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            3567999999999999865       899985433221111             1123444432      2359999999


Q ss_pred             cCCCeeEEEEEEcCC----CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          77 VEDSGKYLCVVNNSV----GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      .+|+|.|+|.+.+..    +.....+.|.|...+.........             .....+..+...+....+.+|+++
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~-------------~~~~~~~~~~~~p~~~~v~~G~~v  156 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSG-------------GGGSTDIQLTQSPSSLSASLGERV  156 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC----------------------------CCCCEEEECSEEEECTTCCE
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccC-------------CCCccccEEEcCCCeEEEECCCCE
Confidence            999999999998862    222334556665421000000000             000001122233445588899999


Q ss_pred             EEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         153 QFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       153 ~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +|.|.+.+.+.+.+.|+++.  ..+.                     ......|.|.++..+|+|.|.|.+.+..
T Consensus       157 ~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          157 SITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             EEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             EEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            99999999888899999842  2111                     0112359999999999999999998854

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.83  E-value=1.1e-20  Score=140.63  Aligned_cols=166  Identities=20%  Similarity=0.366  Sum_probs=110.8

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceec-------cccCCceEEEE-------eeEEEEeecccC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKV-------AVPLNDRVKQV-------SGTLIIKEAKVE   78 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~-------~~~~~~~~~~~-------~~~l~i~~~~~~   78 (267)
                      ..+.+.+|++++|.|.+.+          +.|++++.......       ...+..|....       +.+|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            4567899999999998653          88999643221100       11223444332       568999999999


Q ss_pred             CCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe
Q psy3045          79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY  158 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  158 (267)
                      |+|.|+|.+.+.. ..+..+.|.|...+.   .+..                       .. .....+..|+.+.|.|.+
T Consensus        83 D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~---~p~i-----------------------~~-~~~~~v~~G~~~~l~C~~  134 (222)
T 4i0k_A           83 DEGSYTCFVSIQD-FDSAAVSLQVAAPYS---KPSM-----------------------TL-EPNKDLRPGNMVTITCSS  134 (222)
T ss_dssp             GCSCEEEEEEECC-CCCCCCCCCCCBCCC---CCEE-----------------------EC-CC-----CCSEEEEEEEE
T ss_pred             cCEEEEEEEEeCC-CceEEEEEEEEcCCC---CCcE-----------------------Ee-CCCceecCCceEEEEEec
Confidence            9999999999753 333334444443211   0000                       01 112256679999999998


Q ss_pred             -CCCCCceEEEEE-CCccCCCC--------CC---CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         159 -EGNPVKTISWMK-DGKPVPDH--------NE---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       159 -~~~p~~~~~W~~-~~~~~~~~--------~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                       .+.|.+.+.|++ ++..+...        ..   ..|.+..+..+|.|.|+|.|.|..+....+..+.|.
T Consensus       135 ~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          135 YQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             EEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             ccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence             788999999999 45544321        11   237888899999999999999999998888888876

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.83  E-value=2.5e-19  Score=138.28  Aligned_cols=167  Identities=17%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  113 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT  113 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence            5789999999999999864       89999643321110             01123455432      2589999999


Q ss_pred             cCCCeeEEEEEEcCCCc---c--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          77 VEDSGKYLCVVNNSVGG---E--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~---~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      .+|+|.|+|.+.+..|.   .  ...+.|.|...+.........              ....+..+...+....+.+|++
T Consensus       114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~v~~G~~  179 (282)
T 1qok_A          114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSG--------------GGGSENVLTQSPAIMSASPGEK  179 (282)
T ss_dssp             GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-----------------------------CCCEEEECSEEEECTTCC
T ss_pred             hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCC--------------CCccceEEecCCCEEEEcCCCc
Confidence            99999999999988651   1  123456666533100000000              0001111122244557889999


Q ss_pred             EEEEeEeCCCCCceEEEEE--CCccCC-------------C--------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         152 AQFTCKYEGNPVKTISWMK--DGKPVP-------------D--------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       152 v~l~C~~~~~p~~~~~W~~--~~~~~~-------------~--------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++|.|.+.+.+ +.+.|+|  ++..+.             .        .....|.|.++..+|+|.|.|.+.+..
T Consensus       180 v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          180 VTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             EEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            99999999988 8999999  555431             0        123469999999999999999998753

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.83  E-value=1.2e-19  Score=131.94  Aligned_cols=122  Identities=22%  Similarity=0.516  Sum_probs=100.7

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCC-CceEEEEE-CCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ..+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+...           ....|.|.++..+|+|.|+|.+.+..+
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (191)
T 1epf_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (191)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             ecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCC
Confidence            345556889999999999999876 78999999 88776522           346799999999999999999999874


Q ss_pred             -CceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         206 -SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       206 -~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                       .....+.+.+.   .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus        87 ~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~  142 (191)
T 1epf_A           87 TQSEATVNVKIF---QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI  142 (191)
T ss_dssp             EEEEEEEEEEEE---CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGG
T ss_pred             cceEEEEEEEee---cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEee
Confidence             33445555554   57888777777788999999999999999999999999999885

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.83  E-value=7.7e-21  Score=140.58  Aligned_cols=160  Identities=20%  Similarity=0.321  Sum_probs=105.2

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEEE----eeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ....+.+|++++|.|.+.+     +.|+++..+.....        ......|+...    ..+|.|.+++.+|+|.|+|
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   86 (212)
T 1nfd_E            7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (212)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEE
Confidence            6789999999999999877     99999643332211        01123444332    3489999999999999999


Q ss_pred             EEEcCCCc-c--EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-
Q psy3045          86 VVNNSVGG-E--SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-  161 (267)
Q Consensus        86 ~~~~~~~~-~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-  161 (267)
                      .+.+..+. .  .....|.|...+.  ..+...                       ..+....+..|+.+.|.|.+.+. 
T Consensus        87 ~~~n~~~~~~~~~~~~~l~V~~~~~--~~p~v~-----------------------~~~~~~~~~~g~~v~L~C~~~g~~  141 (212)
T 1nfd_E           87 LSSYGDNNDLVFGSGTQLTVLRGPK--SSPKVT-----------------------VFPPSPEELRTNKATLVCLVNDFY  141 (212)
T ss_dssp             EEEETTTTEEEECCCEEEEEECCCC--BCCEEE-----------------------CCCCCHHHHHTTEECCCEEEEEEB
T ss_pred             EEEcccCcccccCCceEEEEccCCC--CCCEEE-----------------------eeCCchHhccCCceEEEEEEEeeE
Confidence            99963222 1  2223455532111  111111                       00111123468999999999887 


Q ss_pred             CC-ceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         162 PV-KTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       162 p~-~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      |. +.+.|+++|..+....              .+.|.|..+..+|+|.|+|.|.|.....
T Consensus       142 p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          142 PGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             SSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            54 7999999998765321              1237788888899999999999987653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.82  E-value=5.5e-20  Score=142.51  Aligned_cols=165  Identities=16%  Similarity=0.127  Sum_probs=116.2

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCcc-
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGE-   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   94 (267)
                      ....+.+|+++.|.|.+.+      +.|++++...     .....+... .+..|.|.+++..|+|.|+|.+.+..+.. 
T Consensus        97 ~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  171 (292)
T 4dkd_C           97 QEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRP-----LMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVM  171 (292)
T ss_dssp             SEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCC-----CCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEE
T ss_pred             CeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCc-----cccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCcee
Confidence            5788999999999999876      8999863211     111222222 23459999999999999999999876653 


Q ss_pred             EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC-CceEEEEECCc
Q psy3045          95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGK  173 (267)
Q Consensus        95 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~~  173 (267)
                      +..+.|.|.....  ..+...                       ..+....+.+|+.+.|.|.+.+.| ...+.|++++.
T Consensus       172 s~~~~l~V~~~~~--~~p~i~-----------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~  226 (292)
T 4dkd_C          172 SISIRLKVQKVIP--GPPALT-----------------------LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT  226 (292)
T ss_dssp             CCCEEEEEECCCC--SSCEEE-----------------------EESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSC
T ss_pred             EEEEEEEEeCCCC--CCCeEE-----------------------ccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCc
Confidence            4466777765211  011111                       112222456899999999998876 45788889888


Q ss_pred             cCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         174 PVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       174 ~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      .+....           ...|.|.++..+|+|.|+|.|.|..|....+..|.|..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             CCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            664321           24799999999999999999999999877777777653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.82  E-value=1.2e-20  Score=138.17  Aligned_cols=115  Identities=16%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             EEecCCCEEEEeE---eCCCCCceEEEEECCccCCC--------------------------CCCCeEEeccCCCCCCeE
Q psy3045         145 TIDFGRPAQFTCK---YEGNPVKTISWMKDGKPVPD--------------------------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       145 ~~~~g~~v~l~C~---~~~~p~~~~~W~~~~~~~~~--------------------------~~~~~l~i~~~~~~d~g~  195 (267)
                      .+..|+.++|.|.   +.+.|.+.+.|+|+|.....                          .+...|.|.++..+|+|.
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   83 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN   83 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeE
Confidence            6778999999995   56778999999998764321                          123579999999999999


Q ss_pred             EEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       196 y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      |+|.|.|..+.....+.|.|.   .||.+...+....+.+|+.+.|.|.+.|.|.|.|.|++++..+
T Consensus        84 Y~C~a~n~~g~~~~~~~l~V~---~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~  147 (203)
T 4fa8_A           84 YLCRMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE  147 (203)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE---EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC----
T ss_pred             EEEEEEcCCCcEEEEEEEEec---CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeee
Confidence            999999998888777777775   5777777777778889999999999999999999999876543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=132.27  Aligned_cols=124  Identities=26%  Similarity=0.486  Sum_probs=100.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.+.+..+.....
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   92 (197)
T 3lcy_A           13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS   92 (197)
T ss_dssp             CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEE
T ss_pred             cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEE
Confidence            3445588899999999999888888999999998775432         2379999999999999999999988877777


Q ss_pred             EEEEEecccCCCeeec---CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         211 GELKLGGRFDPPVIKE---SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       211 ~~l~v~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      ..+.+..   +|.+..   ......+.+|+.+.|.|.+.+.|.|.+.|+++|..+..+.
T Consensus        93 ~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~  148 (197)
T 3lcy_A           93 SKLLLQA---TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE  148 (197)
T ss_dssp             EEEEEEE---EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS
T ss_pred             EEEEEEc---CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCC
Confidence            7777753   333322   2345567899999999999999999999999999987654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.82  E-value=6.8e-20  Score=139.74  Aligned_cols=177  Identities=16%  Similarity=0.251  Sum_probs=102.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc-------------cCCceEE------EEee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV-------------PLNDRVK------QVSG   68 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~-------------~~~~~~~------~~~~   68 (267)
                      +|.+...+  ..+.+.+|++|+|.|.+.+     +.|++...+.......             .+..+..      ....
T Consensus         2 s~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   79 (259)
T 3omz_A            2 SSNLEGRT--KSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL   79 (259)
T ss_dssp             -----------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred             ccccccCC--ceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence            45666666  7899999999999999987     9999853222111000             0111111      1234


Q ss_pred             EEEEeecccCCCeeEEEEEEcCCCc---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          69 TLIIKEAKVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        69 ~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      +|.|.+++.+|+|.|+|.+.+..+.   ......|.|...............            .......+...+....
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~------------~~~~~~~v~~~p~~~~  147 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAA------------KKDGAQKVTQAQSSVS  147 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------------------CEEECCCCCEE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccc------------cccCCeeeEEeCCEEE
Confidence            7999999999999999999987652   233455666543211000000000            0000111223344558


Q ss_pred             EecCCCEEEEeEeCCC-CCceEEEEECCc--cC-----------------------CCCCCCeEEeccCCCCCCeEEEEE
Q psy3045         146 IDFGRPAQFTCKYEGN-PVKTISWMKDGK--PV-----------------------PDHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p~~~~~W~~~~~--~~-----------------------~~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      +.+|++++|.|.+.+. +.+.+.|++++.  .+                       .......|.|.+++.+|+|.|.|.
T Consensus       148 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  227 (259)
T 3omz_A          148 MPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCA  227 (259)
T ss_dssp             EETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEE
T ss_pred             EcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEE
Confidence            8899999999998775 788999998542  10                       001235699999999999999999


Q ss_pred             EEcC
Q psy3045         200 IRNE  203 (267)
Q Consensus       200 ~~~~  203 (267)
                      +.+.
T Consensus       228 ~~~~  231 (259)
T 3omz_A          228 LGES  231 (259)
T ss_dssp             EESC
T ss_pred             EeCc
Confidence            9853

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.82  E-value=3e-19  Score=137.46  Aligned_cols=174  Identities=18%  Similarity=0.275  Sum_probs=109.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEEE----eeEEEEeec
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGTLIIKEA   75 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~l~i~~~   75 (267)
                      .+.|...|  ..+.+.+|++|+|.|.+.+     +.|+++..+.......        ....|+...    ..+|.|.++
T Consensus        12 ~~~v~~~p--~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   89 (276)
T 3auv_A           12 DIQMTQSP--SSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL   89 (276)
T ss_dssp             CCCEEEEC--SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceeEEeCC--CeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccC
Confidence            45566655  6889999999999999987     9999964332111100        123344432    248999999


Q ss_pred             ccCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          76 KVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      +.+|+|.|+|.+.+..+. ......|.|...+........               ...++......+....+.+|++++|
T Consensus        90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~---------------~~~~p~~~~~~p~~~~v~~G~~v~L  154 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRS---------------GGGGSEVQLVESGGGLVQPGGSLRL  154 (276)
T ss_dssp             CGGGCEEEEEEECSSSSCCCCCCEEEEC--------------------------------CCEEEEECCEEECTTCCEEE
T ss_pred             ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccc---------------cccCcceEEECCCceEecCCCeEEE
Confidence            999999999999987543 223345665543210000000               0001111111223457889999999


Q ss_pred             EeEeCCCC--CceEEEEECC--ccCC------------------C----------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         155 TCKYEGNP--VKTISWMKDG--KPVP------------------D----------HNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       155 ~C~~~~~p--~~~~~W~~~~--~~~~------------------~----------~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .|.+.+.+  .+.+.|++++  ..+.                  .          .....|.|.++..+|+|.|.|.+.|
T Consensus       155 ~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n  234 (276)
T 3auv_A          155 SCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFV  234 (276)
T ss_dssp             EEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEc
Confidence            99998876  5899999963  1110                  0          0123799999999999999999999


Q ss_pred             C
Q psy3045         203 E  203 (267)
Q Consensus       203 ~  203 (267)
                      .
T Consensus       235 ~  235 (276)
T 3auv_A          235 F  235 (276)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.3e-19  Score=135.70  Aligned_cols=173  Identities=21%  Similarity=0.349  Sum_probs=104.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc--------cCCceEEEE----eeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~l~i~~~~~~d~G~Y   83 (267)
                      ....+.+|++|+|.|.+.+       +.|++...+.......        ....|+...    ..+|.|.+++.+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            4689999999999999864       9999964332211110        122344332    24799999999999999


Q ss_pred             EEEEEcCCCcc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          84 LCVVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        84 ~C~~~~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      +|.+.+..+..   ...+.|.|...+..........         .+.............+....+.+|++++|.|.+.+
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  160 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVY---------YTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASG  160 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC-------------------------------CCEEEEECCEEECTTCCEEEEEEEES
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeE---------EeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeC
Confidence            99999865432   2335566655332111000000         00000000000011122336889999999999988


Q ss_pred             CC--CceEEEEECC--ccCC----------------------------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         161 NP--VKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       161 ~p--~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .+  .+.+.|++++  ..+.                            ......|.|.+++.+|+|.|.|.|.+..
T Consensus       161 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          161 FTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             SCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            76  7899999863  2210                            0122459999999999999999999864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.82  E-value=1.5e-19  Score=131.35  Aligned_cols=124  Identities=25%  Similarity=0.421  Sum_probs=102.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCc-eEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QAS  210 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~  210 (267)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...        +...|.|.+++.+|+|.|+|.+.+..+.. ...
T Consensus        13 ~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   92 (192)
T 2iep_A           13 PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC   92 (192)
T ss_dssp             CCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred             CccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence            344557889999999999998888899999999887542        23569999999999999999999987663 445


Q ss_pred             EEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         211 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       211 ~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      ..+.+.   .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.
T Consensus        93 ~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  145 (192)
T 2iep_A           93 GALQVK---MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS  145 (192)
T ss_dssp             EEEEEE---EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCS
T ss_pred             EEEEEE---eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCC
Confidence            566665   46777777777789999999999999999999999999999887653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.82  E-value=3.6e-20  Score=138.00  Aligned_cols=163  Identities=17%  Similarity=0.231  Sum_probs=107.9

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee---------------ccccCCceEEEE------eeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---------------VAVPLNDRVKQV------SGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---------------~~~~~~~~~~~~------~~~l~i~~   74 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+....               ....+..|+...      +.+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            4568999999999999874       9999964332111               001123455443      35899999


Q ss_pred             cccCCCeeEEEEEEcCCC-----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecC
Q psy3045          75 AKVEDSGKYLCVVNNSVG-----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG  149 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g  149 (267)
                      ++.+|+|.|+|.+.+..+     .....+.|.|...+  ...|....                      . +....+..|
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~----------------------~-~~~~~~~~g  142 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK--TTPPSVYP----------------------L-APGSAAQTN  142 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC--CBCCEEEE----------------------E-CCCSCCCCS
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC--CCCCeEEE----------------------c-cccccccCC
Confidence            999999999999988654     11233456665411  11111110                      0 001124569


Q ss_pred             CCEEEEeEeCCC-CCc-eEEEEECCccCCCC-------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         150 RPAQFTCKYEGN-PVK-TISWMKDGKPVPDH-------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       150 ~~v~l~C~~~~~-p~~-~~~W~~~~~~~~~~-------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +.+.|.|.+.+. |.+ .+.|++++..+...       .     .+.|.|..+..+| |.|+|.|.|..+......
T Consensus       143 ~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          143 SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            999999999986 877 99999998775321       1     1357888888889 999999999887654433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=7.7e-19  Score=132.29  Aligned_cols=158  Identities=19%  Similarity=0.301  Sum_probs=105.7

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceecc--------ccCCceEEEE----eeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVA--------VPLNDRVKQV----SGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~--------~~~~~~~~~~----~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|.+.+         +.|+++..+......        .....|+...    ..+|.|.+++.+|+|
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (240)
T 1moe_A            9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (240)
T ss_dssp             SEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCE
Confidence            6789999999999999754         899996432211110        0123344432    237999999999999


Q ss_pred             eEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCC
Q psy3045          82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG  160 (267)
Q Consensus        82 ~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  160 (267)
                      .|+|.+.+..+. ......|.|...+......                       .....+....+.+|+++.|.|.+.+
T Consensus        89 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~-----------------------~~~~~~~~~~v~~G~~v~L~C~~~g  145 (240)
T 1moe_A           89 TYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGE-----------------------VQLQQSGAELVEPGASVKLSCTASG  145 (240)
T ss_dssp             EEEEEECSSSSCCBCCCEEEEECCCSCCCCCC-----------------------CEEEECCCEEECTTCCEEEEEEEES
T ss_pred             EEEEEEccCCceeecCCEEEEEecCCCCCCce-----------------------EEEeCCCceEEeCCCcEEEEEEEcC
Confidence            999999987654 3344566665432100000                       0111123347888999999999998


Q ss_pred             CC--CceEEEEEC--CccCC----------------------------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         161 NP--VKTISWMKD--GKPVP----------------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       161 ~p--~~~~~W~~~--~~~~~----------------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .|  .+.+.|+++  +..+.                            ......|.|.+++.+|+|.|.|.|.+.
T Consensus       146 ~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          146 FNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             ccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            87  459999996  22210                            011246999999999999999999853

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.82  E-value=4.5e-20  Score=137.13  Aligned_cols=160  Identities=21%  Similarity=0.315  Sum_probs=104.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++++|.|.+.+       +.|+++..+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK   87 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            5678999999999999874       99999743321110             01123455442      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCcc----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          77 VEDSGKYLCVVNNSVGGE----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      .+|+|.|+|.+.+..+..    ...+.|.|.....  ..+....                      . +....+..|+.+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~----------------------~-~~~~~~~~g~~v  142 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT--TPPSVYP----------------------L-APGSAAQTNSMV  142 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC--BCCEEEE----------------------E-CCCSSSCCSSEE
T ss_pred             cccCEEEEEEEeccCcccceeecCceEEEEecCCC--CCCeEEE----------------------e-cCccccccCCeE
Confidence            999999999999876321    1234555554210  1111110                      0 001134579999


Q ss_pred             EEEeEeCC-CCCc-eEEEEECCccCCCC--------C----CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         153 QFTCKYEG-NPVK-TISWMKDGKPVPDH--------N----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       153 ~l~C~~~~-~p~~-~~~W~~~~~~~~~~--------~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .|.|.+.+ .|.+ .+.|++++..+...        .    .+.|.|..... |.|.|+|.|.|..+...
T Consensus       143 ~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~  211 (219)
T 1c1e_H          143 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTK  211 (219)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEE
T ss_pred             EEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCcc
Confidence            99999998 7888 99999998764210        1    12577744443 56999999999876544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.82  E-value=2.3e-19  Score=135.46  Aligned_cols=170  Identities=19%  Similarity=0.251  Sum_probs=105.8

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEEE----eeEEEEeecccC
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGTLIIKEAKVE   78 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~l~i~~~~~~   78 (267)
                      +...|  ..+.+.+|++|+|.|.+.+     +.|+++..+.......        ....|+...    ..+|.|.+++.+
T Consensus         4 v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            4 LTQSP--ATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             EEEEC--SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEEcC--CeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            44444  6789999999999999987     9999964322111100        123344432    348999999999


Q ss_pred             CCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          79 DSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      |+|.|+|.+.+..+. ....+.|.|..++........               ....+..+ ..+....+.+|++++|.|.
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~v~~G~~v~L~C~  145 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSG---------------GGGSDIQL-QESGPSLVKPSQTLSLTCS  145 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------------CCEE-EEECCSEECTTSCEEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCccccc---------------ccccceee-ecCCcceecCCCeEEEEEE
Confidence            999999999987543 123345666543320000000               00000000 1111225888999999999


Q ss_pred             eCCCC--CceEEEEECC--ccC------------------C---------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         158 YEGNP--VKTISWMKDG--KPV------------------P---------DHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       158 ~~~~p--~~~~~W~~~~--~~~------------------~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      +.+.+  .+.+.|++++  ..+                  .         ......|.|.++..+|+|.|.|.|.+.
T Consensus       146 ~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          146 VTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             EEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            98875  5789999853  221                  0         011247999999999999999999874

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.82  E-value=6.5e-19  Score=127.91  Aligned_cols=116  Identities=24%  Similarity=0.416  Sum_probs=99.0

Q ss_pred             EEEec-CCCEEEEeEeCCCCC--ceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         144 QTIDF-GRPAQFTCKYEGNPV--KTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       144 ~~~~~-g~~v~l~C~~~~~p~--~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ..+.+ |+.+.|.|.+.+.|.  +.+.|++++..+...    ....|.|.++..+|+|.|+|.+.|. +.......+.|.
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~   90 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVK   90 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEE
T ss_pred             EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEe
Confidence            35556 999999999988876  799999999888654    3467999999999999999999998 666667777776


Q ss_pred             cccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEE--CCEEcC
Q psy3045         217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL--DGKKLV  263 (267)
Q Consensus       217 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~--~~~~l~  263 (267)
                         .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++  +|..+.
T Consensus        91 ---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           91 ---AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             ---CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             ---cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence               57888877777889999999999999999999999999  787663

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.81  E-value=5.3e-19  Score=129.57  Aligned_cols=160  Identities=19%  Similarity=0.295  Sum_probs=105.8

Q ss_pred             eeEEecCCCeEEEEEEec----c-----eeeeecccCccee------ccccCCceEEE---EeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQ----E-----NMWFKFIEGSSRK------VAVPLNDRVKQ---VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~----~-----~~W~~~~~~~~~~------~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~   84 (267)
                      .++.+.+|+++.|.|.+.    +     +.|++++......      ....+..|...   .+.+|.|.+++.+|+|.|+
T Consensus         2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEE
T ss_pred             ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEE
Confidence            367899999999999995    2     8888853211000      00112223322   2458999999999999999


Q ss_pred             EEEEcCCCcc-----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          85 CVVNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        85 C~~~~~~~~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      |.+.+..+..     ...+.|.|...+.   .+....                           .....|+.+.|.|.+.
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~---~p~~~~---------------------------~~~~~g~~~~l~C~~~  131 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFP---TPSISD---------------------------FEIPTSNIRRIICSTS  131 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCC---CCEEEE---------------------------EECSSTTEEEEEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCC---CCceEe---------------------------ccCCCCCeEEEEEecC
Confidence            9999977653     2455666654321   111110                           0224478899999995


Q ss_pred             -CCCCceEEEEECCccCCCC--------CCCeE---EeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         160 -GNPVKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       160 -~~p~~~~~W~~~~~~~~~~--------~~~~l---~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                       +.|.|.+.|+++|..+...        .+..+   .+..+..+|.|.|+|.|.|..+.....+.
T Consensus       132 ~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          132 GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence             8899999999999887632        11211   22344568999999999999887665544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=137.30  Aligned_cols=148  Identities=18%  Similarity=0.289  Sum_probs=111.1

Q ss_pred             eeEEecCCCeEEEEEEec-c-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ....+.+|+++.|.|.+. +     +.|++++...          .....+..|.|.+++.+|+|.|+|.+.+..+..+.
T Consensus        90 ~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~  159 (262)
T 3rjd_A           90 SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF----------KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSA  159 (262)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE----------EEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEE
T ss_pred             CCeEEecCCeEEEEEEccCCCCCceEEEEECCccc----------cccCCCCeEEEEECChhhCEEEEEEEeCCCCcccc
Confidence            456788999999999994 3     9999953211          11223568999999999999999999998877777


Q ss_pred             EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC-c----eEEEEEC
Q psy3045          97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV-K----TISWMKD  171 (267)
Q Consensus        97 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~----~~~W~~~  171 (267)
                      .+.|.|.....   .+...                       ..+ ...+.+|+.+.|.|.+.+.|. +    .+.|+++
T Consensus       160 ~~~l~V~~~~~---~p~~~-----------------------~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~  212 (262)
T 3rjd_A          160 GISVTVKELFP---APVLN-----------------------ASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG  212 (262)
T ss_dssp             CEEEEEECSSC---CCEEE-----------------------ESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEET
T ss_pred             ceEEEeccCCC---CCeEe-----------------------ecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeC
Confidence            77888775321   01110                       001 124778999999999998875 4    4789999


Q ss_pred             CccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         172 GKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       172 ~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +..+.. .....|.|..+..+|+|.|+|.|.|..|..
T Consensus       213 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          213 SKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             TEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             CcEecccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            987753 345789999999999999999999998865

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=138.66  Aligned_cols=171  Identities=23%  Similarity=0.323  Sum_probs=109.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceec-----------cccCC-ceEEEE-----eeEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKV-----------AVPLN-DRVKQV-----SGTLI   71 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~-----------~~~~~-~~~~~~-----~~~l~   71 (267)
                      .+.+...+  ..+.+.+|++|+|.|.+..    +.|++...+.....           ..... .|+...     +.+|.
T Consensus        26 ~~~v~~~p--~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (268)
T 3pl6_D           26 GAGVSQTP--SNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLK  103 (268)
T ss_dssp             -SSCBCCC--SEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEE
T ss_pred             CceeEeCC--CEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEE
Confidence            45566555  6889999999999999876    99999433221110           00111 444432     45899


Q ss_pred             EeecccCCCeeEEEEEEcCC--CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecC
Q psy3045          72 IKEAKVEDSGKYLCVVNNSV--GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG  149 (267)
Q Consensus        72 i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g  149 (267)
                      |.+++.+|+|.|+|.+.+..  ........|.|.........|...                      ...+....+..|
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~----------------------~~~~~~~~~~~g  161 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVA----------------------VFEPSEAEISHT  161 (268)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEE----------------------EECCCHHHHHHH
T ss_pred             ECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceE----------------------EeCCCcccccCC
Confidence            99999999999999999742  223334456666422211122211                      011111234558


Q ss_pred             CCEEEEeEeCCCCCc--eEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEEEcCCCC
Q psy3045         150 RPAQFTCKYEGNPVK--TISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVIRNEQES  206 (267)
Q Consensus       150 ~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~~  206 (267)
                      +.++|.|.+.+.+++  .+.|+++|..+...              ..      +.|.+.....+| .|.|+|.|.|....
T Consensus       162 ~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          162 QKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            999999999886543  89999999877431              11      335666666666 99999999997644


Q ss_pred             c
Q psy3045         207 A  207 (267)
Q Consensus       207 ~  207 (267)
                      .
T Consensus       242 ~  242 (268)
T 3pl6_D          242 E  242 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.81  E-value=4.2e-19  Score=132.28  Aligned_cols=163  Identities=16%  Similarity=0.216  Sum_probs=107.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            4678999999999999874       89999643322111             11134565543      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCc------cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCC
Q psy3045          77 VEDSGKYLCVVNNSVGG------ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGR  150 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~  150 (267)
                      .+|+|.|+|.+.+..+.      ....+.|.|...+  ...|.....                      .+. ..+..|+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~----------------------~~~-~~~~~g~  142 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS--ASAPTLFPL----------------------VSC-ENSNPSS  142 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEE----------------------ECT-TCCCSSS
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC--CCCCEEEEe----------------------cCC-cccCCCC
Confidence            99999999999986531      1123456665311  011111100                      000 1245789


Q ss_pred             CEEEEeEeCCC-CCc-eEEEEE-CCccCCC---------CC----CCeEEeccCCC--CCCeEEEEEEEcCCCCceEE
Q psy3045         151 PAQFTCKYEGN-PVK-TISWMK-DGKPVPD---------HN----EPVFRIDSVRK--EDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       151 ~v~l~C~~~~~-p~~-~~~W~~-~~~~~~~---------~~----~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+.|.|.+.+. |.+ .+.|++ +|..+..         +.    .+.|.|.....  +|.|.|+|.|.|..+.....
T Consensus       143 ~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          143 TVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             cEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            99999999887 766 999999 8887743         11    13467766665  78899999999998765543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.81  E-value=9.5e-20  Score=136.16  Aligned_cols=165  Identities=18%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|.+.+       +.|+++..+......             ..+..|+...      +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            5778999999999999864       999997433221100             0123455432      4589999999


Q ss_pred             cCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEE
Q psy3045          77 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFT  155 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~  155 (267)
                      .+|+|.|+|.+.+..+. ....+.|.|....  ...+...                      ...+ ...+..|+.++|.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~----------------------~~~~-~~~~~~g~~v~L~  142 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFPYWGQGTLVTVSAAK--TTAPSVY----------------------PLAP-VCGDTSGSSVTLG  142 (227)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEECSSC--CBCCEEE----------------------EECC-CC------CEEEE
T ss_pred             cccCEEEEEEECCCCceEEcCcEEEEEcCCC--CCCCEEE----------------------EecC-CccccCCCcEEEE
Confidence            99999999999875321 1123456665311  0111111                      0001 1135579999999


Q ss_pred             eEeCCC-CCc-eEEEEECCccCCC--C----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         156 CKYEGN-PVK-TISWMKDGKPVPD--H----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       156 C~~~~~-p~~-~~~W~~~~~~~~~--~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      |.+.+. |.+ .+.|++++..+..  .          ..+.|.|.....+| |.|+|.|.|..........+
T Consensus       143 C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  213 (227)
T 1mju_H          143 CLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  213 (227)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEe
Confidence            999886 666 9999999876421  0          12357888888777 99999999976554444433

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.81  E-value=4.1e-21  Score=144.12  Aligned_cols=166  Identities=17%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceE----EEEeeEEEEeec
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRV----KQVSGTLIIKEA   75 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~----~~~~~~l~i~~~   75 (267)
                      .+.+...|  ..+.+.+|++++|.|.+.+     +.|+++..+.....        ......|+    ...+.+|.|.++
T Consensus        23 ~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  100 (233)
T 3bqu_C           23 ETTVTQSP--ASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENM  100 (233)
T ss_dssp             CCCEEEEC--SBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC----
T ss_pred             ceeEEEcC--CeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCC
Confidence            34455445  6788999999999999877     99998643321100        00111222    223458999999


Q ss_pred             ccCCCeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          76 KVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      +.+|+|.|+|.+.+..+.. .....|.|.....   .+...                      .. +....+..|+.++|
T Consensus       101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~---~p~v~----------------------~~-~~~~~~~~g~~v~L  154 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADA---APTVS----------------------IF-PPSSEQLTSGGASV  154 (233)
T ss_dssp             -CCCCSEEEEEECSSSSCCBCCCCBC---CCCB---CCEEE----------------------EE-CCCHHHHHTTEEEE
T ss_pred             CHHHCEEEEEEEecCCceeecCCEEEEEeCCCC---CCEEE----------------------Ee-CCCHHhhcCCceEE
Confidence            9999999999998865432 2223344433110   11111                      00 00012235899999


Q ss_pred             EeEeCCC-CCc-eEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         155 TCKYEGN-PVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       155 ~C~~~~~-p~~-~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .|.+.+. |.+ .+.|+++|..+...          ..      +.|.|.....+|.|.|+|.|.|....
T Consensus       155 ~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          155 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            9999885 443 89999999876433          11      25778888888999999999997543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.80  E-value=2.3e-19  Score=135.70  Aligned_cols=169  Identities=22%  Similarity=0.303  Sum_probs=108.1

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCccee-------------ccccCCceEEEE-----eeEEEE
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK-------------VAVPLNDRVKQV-----SGTLII   72 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~-------------~~~~~~~~~~~~-----~~~l~i   72 (267)
                      +...+  ..+.+.+|++|+|.|.+.+     +.|++...+....             .......|+...     +.+|.|
T Consensus         4 v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            4 VSQHP--SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             EEEEC--SEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             cEECC--cEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            44444  6789999999999999888     9999842221110             011122444432     348999


Q ss_pred             eecccCCCeeEEEEEEcCCCc----cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          73 KEAKVEDSGKYLCVVNNSVGG----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        73 ~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      .+++.+|+|.|+|.+.+..+.    ....+.|.|.........+...                      ...+....+..
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~----------------------~~~~~~~~~~~  139 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVA----------------------VFEPSEAEISH  139 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEE----------------------EECCCHHHHHH
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceE----------------------eecCCchhccC
Confidence            999999999999999875431    1233456665421111122111                      01111223456


Q ss_pred             CCCEEEEeEeCCCCCc--eEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGNPVK--TISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~  205 (267)
                      |+.+.|.|.+.+.+++  .+.|+++|..+...              ..      +.|.|.....+| .|.|+|.|.|...
T Consensus       140 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          140 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            8999999999887544  89999999877532              11      236777777777 9999999999765


Q ss_pred             Cce
Q psy3045         206 SAQ  208 (267)
Q Consensus       206 ~~~  208 (267)
                      ...
T Consensus       220 ~~~  222 (246)
T 4dzb_B          220 SEN  222 (246)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            433

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.80  E-value=1.9e-18  Score=127.09  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=93.6

Q ss_pred             eEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         143 VQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +..+.+|+.+.|.|.+.+ .|.+.+.|++||.++..+.           ...|.|.++..+|+|.|+|.|.|  +.....
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~   88 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNH   88 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEE
Confidence            347889999999999864 6899999999999885432           12689999999999999999999  444444


Q ss_pred             EEEEEecc------------------cCCCeeecCCceeEEecCCcEEEEEEeecC-CCCcEEEEECCEEcCCCC
Q psy3045         211 GELKLGGR------------------FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       211 ~~l~v~~~------------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~l~~~~  266 (267)
                      ..+.+...                  ..+|.+.... ...+.+|+.+.|.|.+.|. |.|.|.|+|||+.|..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~  162 (207)
T 3rbs_A           89 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE  162 (207)
T ss_dssp             EEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC
T ss_pred             EEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC
Confidence            43322100                  0256665544 4678999999999999998 899999999999997653

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.80  E-value=8.4e-19  Score=130.39  Aligned_cols=160  Identities=21%  Similarity=0.308  Sum_probs=107.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......             .....|+...      +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            4688999999999999863       899996433221110             1123555543      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCc---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEE
Q psy3045          77 VEDSGKYLCVVNNSVGG---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQ  153 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~  153 (267)
                      .+|+|.|+|.+.+..+.   ....+.|.|...+.  ..|.....                       + ...+..|+.++
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--~~P~v~~~-----------------------~-~~~~~~g~~v~  141 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA--RNPTIYPL-----------------------T-LPPALSSDPVI  141 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC--BCCEEEEE-----------------------C-CCSSSCCSSEE
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCC--CCCEEEEe-----------------------e-cccccCCCcEE
Confidence            99999999999986542   11234566654211  11111100                       0 11345799999


Q ss_pred             EEeEeCCC-CC--ceEEEEECCccCC---------CCCC----CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         154 FTCKYEGN-PV--KTISWMKDGKPVP---------DHNE----PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       154 l~C~~~~~-p~--~~~~W~~~~~~~~---------~~~~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      |.|.+.+. |.  +.+.|++++..+.         .+..    +.|.|.....+|.|.|+|.|.|..+..+
T Consensus       142 L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          142 IGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            99999886 65  7999999987652         1111    2478888888899999999999987654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.80  E-value=1.8e-19  Score=136.83  Aligned_cols=166  Identities=20%  Similarity=0.319  Sum_probs=107.4

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc----------eeeeecccCcceec--------cccCCceEEEE----eeEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKV--------AVPLNDRVKQV----SGTLI   71 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~   71 (267)
                      +.+...+  ..+.+.+|++|+|.|.+.+          +.|++++.+.....        ......|+...    +.+|.
T Consensus        35 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  112 (252)
T 3bkj_L           35 VLMTQTP--LSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLR  112 (252)
T ss_dssp             CCEEEEC--SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cEEEeCC--ceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEE
Confidence            4455445  6889999999999999853          78999643322110        01123444332    24899


Q ss_pred             EeecccCCCeeEEEEEEcCCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCC
Q psy3045          72 IKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGR  150 (267)
Q Consensus        72 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~  150 (267)
                      |.+++.+|+|.|+|.+.+..+.. .....|.|.....   .+....                      . +....+..|+
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~---~P~v~~----------------------~-~~~~~~~~g~  166 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADA---APTVSI----------------------F-PPSSEQLTSG  166 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCB---CCEEEE----------------------E-CCCHHHHHHT
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCc---CcEEEE----------------------e-CCChhhcCCC
Confidence            99999999999999998875431 2224455543110   111110                      0 0001233588


Q ss_pred             CEEEEeEeCCC-CCc-eEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         151 PAQFTCKYEGN-PVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       151 ~v~l~C~~~~~-p~~-~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .++|.|.+.+. |.+ .+.|+++|..+...          ..      ..|.|..+..+|.|.|+|.|.|.....
T Consensus       167 ~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          167 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            99999999884 443 89999999876432          11      247888888889999999999987543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.80  E-value=9.7e-20  Score=134.48  Aligned_cols=160  Identities=16%  Similarity=0.235  Sum_probs=104.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ....+.+|++++|.|.+.+       +.|+++..+.....            ......|+...      ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            4568999999999999874       99999643322110            00123455432      24899999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      +|+|.|+|.+.+.. .......|.|....  ...+....                      . +....+..|+.+.|.|.
T Consensus        88 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~--~~~P~v~~----------------------~-~~~~~~~~g~~v~L~C~  141 (210)
T 3d9a_H           88 EDTATYYCANWDGD-YWGQGTLVTVSAAK--TTPPSVYP----------------------L-APGSAAQTNSMVTLGCL  141 (210)
T ss_dssp             GGCEEEEEEETTSS-CBCCCEEEEECCCC--CBCCEEEE----------------------E-CCTTSCCCSSEEEEEEE
T ss_pred             ccCEEEEEEEecCc-ccccceEEEeccCC--CCCCEEEE----------------------e-cCCcccccCCcEEEEEE
Confidence            99999999998753 11223455554311  01111110                      0 00113457999999999


Q ss_pred             eCCC-CCc-eEEEEECCccCCCC------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         158 YEGN-PVK-TISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       158 ~~~~-p~~-~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +.+. |.+ .+.|++++..+...            ..+.|.|.....++ |.|+|.|.|..+....
T Consensus       142 ~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          142 VKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             EeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            9987 777 99999998764210            12347788877766 9999999998876543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.80  E-value=9.1e-19  Score=126.88  Aligned_cols=125  Identities=27%  Similarity=0.519  Sum_probs=92.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...        ....|.|.++..+|+|.|+|.+.+..+.......
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   88 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD   88 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence            44558899999999999998898999999998776531        2467999999999999999999988755443333


Q ss_pred             EEEecccCCCeeecCCc--eeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         213 LKLGGRFDPPVIKESFS--DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       213 l~v~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+.+. .+|.+.....  ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.
T Consensus        89 ~~l~v~-~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~  143 (189)
T 2v5t_A           89 IIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE  143 (189)
T ss_dssp             EEEEEE-EEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS
T ss_pred             EEEEec-CCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC
Confidence            333322 3455554443  3466789999999999999999999999999887553

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=127.78  Aligned_cols=118  Identities=19%  Similarity=0.301  Sum_probs=94.1

Q ss_pred             CCCEEEEeEeCCC-CCceEEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec-
Q psy3045         149 GRPAQFTCKYEGN-PVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG-  217 (267)
Q Consensus       149 g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~-  217 (267)
                      ++.+.|.|.+.+. |.+.+.|++++..+.....         ..|.|.++..+|+|.|+|.+.|..+....+..+.+.. 
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~   96 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY   96 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeec
Confidence            7888999999886 5889999999988865432         3499999999999999999999877666555554321 


Q ss_pred             -----------------ccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         218 -----------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       218 -----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                                       ...++.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.+..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~  162 (212)
T 2r15_A           97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD  162 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS
T ss_pred             cchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC
Confidence                             0134445555666789999999999999999999999999999987654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.80  E-value=6.2e-19  Score=134.85  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=110.1

Q ss_pred             eeEEecCCCeEEEEEEecc---eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC-CccE---
Q psy3045          23 IRFKKPGGESFALLCEAQE---NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV-GGES---   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~---   95 (267)
                      ....+.+|+.+.|.|.+..   +.|  ++...      ....    ....|.|..+..+|.|.|+|.+.|.. |...   
T Consensus       106 ~~~~v~~G~~v~l~C~~~p~~~i~W--~g~~~------~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s  173 (265)
T 2oz4_A          106 TKPEVSEGTEVTVKCEAHPRAKVTL--NGVPA------QPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN  173 (265)
T ss_dssp             SCSEEETTCEEEEEEECCTTSEEEE--SSCSS------SCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEE
T ss_pred             CCceecCCCcEEEEEEccCCCEEEE--CCEEc------cCCC----CcEEEEEccccccCCceEEEEEEcCCCCCccccc
Confidence            3456889999999999977   999  32211      1111    23468899999999999999998654 5543   


Q ss_pred             EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccC
Q psy3045          96 VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV  175 (267)
Q Consensus        96 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~  175 (267)
                      ..+.|.|..++......                           .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+
T Consensus       174 ~~~~l~V~~~p~~~~~~---------------------------~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~  226 (265)
T 2oz4_A          174 QTRELRVLYGPRLDERD---------------------------CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP  226 (265)
T ss_dssp             EEEEEEEEEEEECCGGG---------------------------SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE
T ss_pred             ccEEEEEEeCCcccccc---------------------------CCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc
Confidence            66777777655433221                           122337888999999999999999999999999833


Q ss_pred             CCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       176 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ...  ..+  ..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       227 ~~~--g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          227 LPI--GES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCT--TSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCC--CcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            222  222  2477899999999999999888888877775

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.80  E-value=7.8e-19  Score=128.20  Aligned_cols=116  Identities=20%  Similarity=0.313  Sum_probs=82.6

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC--------CCCCeEEeccCCCCCCeEEEEEEEcCCCCc--eEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA--QASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~  214 (267)
                      .+.+|++++|.|.+.+.|. .+.|+|++..+..        .....|.|.+++.+|+|.|+|.+.|..+..  ...+.|.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence            6889999999999988765 9999999987742        245689999999999999999999876533  2345666


Q ss_pred             EecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       215 v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      |.....+|.+...+. ..+.+|+.++|.|.+.+.| +.+.|+|+|..+.
T Consensus        94 V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~  140 (196)
T 2d3v_A           94 VTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKL  140 (196)
T ss_dssp             EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CC
T ss_pred             ecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCccc
Confidence            665444677766543 4788999999999999998 8999999998764

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.79  E-value=2.3e-19  Score=133.38  Aligned_cols=162  Identities=19%  Similarity=0.239  Sum_probs=106.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec---------------cccCCceEEEE------eeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV---------------AVPLNDRVKQV------SGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---------------~~~~~~~~~~~------~~~l~i~~   74 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....               ...+..|+...      ..+|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            5678999999999999874       99999643321100               01123455432      24899999


Q ss_pred             cccCCCeeEEEEEEcCCCcc-E--EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          75 AKVEDSGKYLCVVNNSVGGE-S--VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      ++.+|+|.|+|.+.+..+.. .  ..+.|.|....  ...|....                      . +....+.+|+.
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~----------------------~-~~~~~~~~g~~  142 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--TTAPSVYP----------------------L-VPGCSDTSGSS  142 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEE----------------------E-CCCSCCSCSSS
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCC--CCCCeEEE----------------------c-ccccccCCCCc
Confidence            99999999999999875321 1  23455555311  01111110                      0 00113467999


Q ss_pred             EEEEeEeCCC-CCc-eEEEEECCccC-----CC---C----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         152 AQFTCKYEGN-PVK-TISWMKDGKPV-----PD---H----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       152 v~l~C~~~~~-p~~-~~~W~~~~~~~-----~~---~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +.|.|.+.+. |.+ .+.|++++...     ..   .    ..+.|.|.....++ |.|+|.|.|..+..+.+
T Consensus       143 v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          143 VTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            9999999987 878 99999988641     11   0    12457787777766 99999999998865544

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.79  E-value=2.3e-18  Score=130.30  Aligned_cols=165  Identities=18%  Similarity=0.296  Sum_probs=102.6

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccc--------cCCceEEEE----eeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~l~i~~~~~~d~   80 (267)
                      ..+.+.+|++|+|.|.+.+          +.|+++..+.......        ....|+...    ..+|.|.+++.+|+
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   88 (247)
T 1svz_A            9 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   88 (247)
T ss_dssp             SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHC
Confidence            6789999999999999742          8999964332111100        113444432    34799999999999


Q ss_pred             eeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          81 GKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        81 G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      |.|+|.+.+..+. ....+.|.|...+.....+..               ...++..+.. +....+.+|++++|.|.+.
T Consensus        89 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~  152 (247)
T 1svz_A           89 GIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSG---------------GGGSEVQLQQ-SGPELKKPGETVKISCKAT  152 (247)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC------------------------------CCEEEE-CCCEEECTTCCEEEEEEEE
T ss_pred             EEEEEEEccCCccEECCCEEEEEECCccccccccc---------------cccCceEEeC-CCceeecCCCcEEEEEEEc
Confidence            9999999887543 222345666543210000000               0000111111 1223588999999999998


Q ss_pred             CCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         160 GNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       160 ~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      +.+  .+.+.|++++  ..+                   ..         .....|.|.+++.+|+|.|.|.+.|.
T Consensus       153 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          153 NYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            874  5699999963  111                   00         01247999999999999999999985

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=126.90  Aligned_cols=116  Identities=19%  Similarity=0.322  Sum_probs=93.5

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC--------CCCCeEEeccCCCCCCeEEEEEEEcCCC--CceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQE--SAQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l~  214 (267)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+..        .....|.|.+++.+|+|.|+|.+.|..+  .....+.+.
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence            7888999999999988 6789999999987752        3457899999999999999999999876  234456666


Q ss_pred             EecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       215 v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      |.....+|.+...+.. .+.+|+.++|.|.+.+ +++.+.|+|+|..+.
T Consensus        94 V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  140 (196)
T 3p2t_A           94 MTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHP  140 (196)
T ss_dssp             EECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCG
T ss_pred             ecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCccc
Confidence            6654456777766554 6789999999999987 456899999997653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=134.85  Aligned_cols=127  Identities=24%  Similarity=0.356  Sum_probs=102.4

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++.+|+|.|+|.|.|..+
T Consensus         7 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (305)
T 2nzi_A            7 FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG   86 (305)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             eeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCC
Confidence            3344556689999999999999999999999999998875431           13799999999999999999999988


Q ss_pred             CceEEEEEEEecccCCCee-----ecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         206 SAQASGELKLGGRFDPPVI-----KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       206 ~~~~~~~l~v~~~~~~p~~-----~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      .......|.|..   +|.+     ...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.
T Consensus        87 ~~~~~~~l~V~~---~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~  149 (305)
T 2nzi_A           87 SVSGTASLEVEV---PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG  149 (305)
T ss_dssp             EEEEEEEEEECE---EEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS
T ss_pred             CccceEEEEEec---CCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC
Confidence            777777777753   3332     223345678899999999999999999999999998876543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.79  E-value=7.1e-19  Score=137.95  Aligned_cols=157  Identities=15%  Similarity=0.229  Sum_probs=102.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceE--EEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRV--KQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.|...+  .. .+.+|++++|.|.+.+    +.|++++.......   .....  ......|.|.+++.+|+|.|+|.
T Consensus       119 ~p~~~~~~--~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~  192 (316)
T 3vh8_G          119 KPSLLAHP--GP-LVKSGERVILQCWSDIMFEHFFLHKEGISKDPSR---LVGQIHDGVSKANFSIGPMMLALAGTYRCY  192 (316)
T ss_dssp             CCEEEEES--CS-EEETTCCEEEEEEESSCCSEEEEEETTCCSCCEE---EECEEETTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEEecC--CC-ccCCCCeEEEEEcCCCCCcEEEEEECCCccccce---eeeeecCCCceEEEEECCCChhhCceEEEE
Confidence            45666544  23 3889999999999976    89999643221110   00111  12456899999999999999999


Q ss_pred             EEcCCCcc-----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045          87 VNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN  161 (267)
Q Consensus        87 ~~~~~~~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  161 (267)
                      +.|..+..     +..+.|.|.....   .+...                       ..+. ..+.+|+.++|.|.+. .
T Consensus       193 a~n~~g~~~~s~~s~~~~l~V~~~~~---~p~i~-----------------------~~~~-~~v~~G~~v~L~C~~~-~  244 (316)
T 3vh8_G          193 GSVTHTPYQLSAPSDPLDIVVTGPYE---KPSLS-----------------------AQPG-PKVQAGESVTLSCSSR-S  244 (316)
T ss_dssp             EECTTCTTBCCCCCCCEEEEEECSSC---CCEEE-----------------------EESC-SCCCTTSCCEEEEEES-S
T ss_pred             EecCCCCccccCCCCCEEEEecCCCC---CCeEE-----------------------eCCC-CeecCCCcEEEEEECC-C
Confidence            99987641     4455666654211   11111                       0011 1467899999999997 4


Q ss_pred             CCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         162 PVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       162 p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +.+.+.|+++|..+...          ....|.|.+++  |+|.|+|.+.|..+
T Consensus       245 ~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~  296 (316)
T 3vh8_G          245 SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHS  296 (316)
T ss_dssp             CCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTB
T ss_pred             CCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCC
Confidence            67899999999876521          12578898888  99999999999654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.78  E-value=7.4e-18  Score=128.75  Aligned_cols=178  Identities=19%  Similarity=0.267  Sum_probs=109.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEec---------c--eeeeecccCcceeccc--------cCCceEEEE----eeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQ---------E--NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGT   69 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~---------~--~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~   69 (267)
                      .+.+...|  ..+.+.+|++|+|.|.+.         .  +.|+++..+.......        ....|+...    ..+
T Consensus         5 ~~~v~q~p--~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~   82 (264)
T 2gjj_A            5 DIVLTQTP--SSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFT   82 (264)
T ss_dssp             CCCEEEEC--SEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred             ccceEecC--CeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEE
Confidence            45666655  688999999999999964         2  8899964332111100        123454432    358


Q ss_pred             EEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeec-CCCcccccCCceEEEe
Q psy3045          70 LIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI-SPPLAAGVEPTVQTID  147 (267)
Q Consensus        70 l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~  147 (267)
                      |.|.+++.+|+|.|+|.+.+..+. ....+.|.|...+.........       ...   ... .+...+.. +....+.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~-~~~~~v~  151 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSG-------GGG---SGGGGSEVQLQQ-SGPEVVK  151 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-----------------------------CCEEEE-CCCEEEC
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCccccccccc-------ccc---cccccCcEEEeC-CCCEEEc
Confidence            999999999999999999886542 1233466776542100000000       000   000 00011111 1223688


Q ss_pred             cCCCEEEEeEeCCCCC--ceEEEEECC--ccCC------------------C----------CCCCeEEeccCCCCCCeE
Q psy3045         148 FGRPAQFTCKYEGNPV--KTISWMKDG--KPVP------------------D----------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~--~~~~W~~~~--~~~~------------------~----------~~~~~l~i~~~~~~d~g~  195 (267)
                      +|++++|.|.+.+.+.  +.+.|+++.  ..+.                  .          .....|.|.+++.+|+|.
T Consensus       152 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~  231 (264)
T 2gjj_A          152 TGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSAD  231 (264)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEE
Confidence            9999999999988763  799999963  2110                  0          113479999999999999


Q ss_pred             EEEEEEcC
Q psy3045         196 YQCVIRNE  203 (267)
Q Consensus       196 y~C~~~~~  203 (267)
                      |.|.+.|.
T Consensus       232 Y~C~a~n~  239 (264)
T 2gjj_A          232 YYCVRSGN  239 (264)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            99999985

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.78  E-value=2.2e-18  Score=129.20  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ..+.+.+|++++|.|.+.+       +.|++...+.....            ......|+...      +.+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            4578999999999999863       99999643321110            01124555542      34899999999


Q ss_pred             CCCeeEEEEEEcCCC--c----cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecC-C
Q psy3045          78 EDSGKYLCVVNNSVG--G----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG-R  150 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~--~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g-~  150 (267)
                      +|+|.|+|.+.+..+  .    ....+.|.|...+.  ..|....                      ..+. ..+..| +
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~~P~v~~----------------------~~p~-~~~~~g~~  142 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA--SAPTLFP----------------------LVSC-ENSPSDTS  142 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC--BCCEEEE----------------------EECC-------CC
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC--CCCceEE----------------------eccc-cccCCCCC
Confidence            999999999984221  1    11234666654210  1111110                      0001 133468 8


Q ss_pred             CEEEEeEeCCC-CCc-eEEEEE-CCccCCC---------CC----CCeEEeccCCC--CCCeEEEEEEEcCCCCceEEEE
Q psy3045         151 PAQFTCKYEGN-PVK-TISWMK-DGKPVPD---------HN----EPVFRIDSVRK--EDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       151 ~v~l~C~~~~~-p~~-~~~W~~-~~~~~~~---------~~----~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      .++|.|.+.+. |.+ .+.|++ +|..+..         ..    .+.|.|.....  +|.|.|+|.|.|..+.......
T Consensus       143 ~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~  222 (232)
T 1dn0_B          143 SVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVP  222 (232)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEE
T ss_pred             cEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEe
Confidence            99999999876 765 999999 8877542         11    13567777776  7899999999999876554444


Q ss_pred             EE
Q psy3045         213 LK  214 (267)
Q Consensus       213 l~  214 (267)
                      +.
T Consensus       223 i~  224 (232)
T 1dn0_B          223 LP  224 (232)
T ss_dssp             CC
T ss_pred             cC
Confidence            33

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.78  E-value=1.7e-17  Score=120.79  Aligned_cols=161  Identities=15%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      |...+....+.+.+|++++|.|.+..      +.|++.+..      + ...........|.|.+++.+|+|.|.|.+.+
T Consensus         8 ~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~~~~------l-~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n   80 (210)
T 1gsm_A            8 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS------L-GAVQSDTGRSVLTVRNASLSAAGTRVCVGSC   80 (210)
T ss_dssp             EEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTT------T-CCEEEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeecccc------c-CcEEecCCccEEEECccCcccCceEEEEEEe
Confidence            43344324579999999999999922      899984211      1 1111223456899999999999999999999


Q ss_pred             CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC----c
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV----K  164 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~----~  164 (267)
                      ..+.....+.|.|..+|.....      .                      +.  .+..|+.+ |.|.+.+. |.    +
T Consensus        81 ~~~~~~~~~~ltV~~~P~~~~i------~----------------------~~--~~~~g~~~-l~C~a~g~~P~~~~~l  129 (210)
T 1gsm_A           81 GGRTFQHTVQLLVYAFPNQLTV------S----------------------PA--ALVPGDPE-VACTAHKVTPVDPNAL  129 (210)
T ss_dssp             TTEEEEEEEEEEEEBCCSEEEE------E----------------------SS--SBCTTCCE-EEEEEEEEBCCCTTTE
T ss_pred             CCCceEEEEEEEEEecCCCcEE------c----------------------cc--eEEeCCce-EEEEeCCCCCCCCCCc
Confidence            8877778888998876532110      0                      00  34467888 99999875 63    4


Q ss_pred             eEEEEECCccCCCCC-----------------C------CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         165 TISWMKDGKPVPDHN-----------------E------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       165 ~~~W~~~~~~~~~~~-----------------~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ++.|++|+.++....                 .      +++.+.....++.+.|+|.|.+..-.........
T Consensus       130 ti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~~~~~  202 (210)
T 1gsm_A          130 SFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQA  202 (210)
T ss_dssp             EEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCccccccc
Confidence            899999998874321                 0      1122224455566899999999875555444333

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.78  E-value=2.9e-18  Score=132.14  Aligned_cols=166  Identities=19%  Similarity=0.275  Sum_probs=102.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (280)
T 3fku_X            8 GAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLR   87 (280)
T ss_dssp             CCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            6789999999999999864       89998533221111             11122344432      1479999999


Q ss_pred             cCCCeeEEEEEEcCC--------C-ccEEEEEEEEEe-ccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          77 VEDSGKYLCVVNNSV--------G-GESVETVLTVTA-PLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~--------~-~~~~~~~l~V~~-~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      .+|+|.|+|.+.+..        . .......|.|.. .........               ....++..+...+. ..+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~---------------~~~~~~~~v~~~p~-~~v  151 (280)
T 3fku_X           88 SEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGS---------------GGGGIQPGLTQPPS-VSK  151 (280)
T ss_dssp             STTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-----------------------------CCCSBBCCSE-EEE
T ss_pred             hhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCC---------------CceEeeeEEEeCCc-EEE
Confidence            999999999998861        1 112233455543 100000000               00011222223333 688


Q ss_pred             ecCCCEEEEeEeCC-CC-CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         147 DFGRPAQFTCKYEG-NP-VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       147 ~~g~~v~l~C~~~~-~p-~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      .+|++++|.|.+.+ .+ .+.+.|++..  ..+.                     ......|.|.+++.+|+|.|.|.+.
T Consensus       152 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  231 (280)
T 3fku_X          152 GLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTW  231 (280)
T ss_dssp             CTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             ecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEe
Confidence            99999999999987 43 4789999832  2211                     0012359999999999999999998


Q ss_pred             cCC
Q psy3045         202 NEQ  204 (267)
Q Consensus       202 ~~~  204 (267)
                      +..
T Consensus       232 ~~~  234 (280)
T 3fku_X          232 DSS  234 (280)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            865

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=2.4e-18  Score=129.80  Aligned_cols=177  Identities=16%  Similarity=0.265  Sum_probs=110.0

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc------------c-CCceEEEE------e
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV------------P-LNDRVKQV------S   67 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~------------~-~~~~~~~~------~   67 (267)
                      +.+...+  ..+.+.+|++++|.|.+.+       +.|++...+.......            . ...|+...      +
T Consensus         2 ~~v~q~p--~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   79 (242)
T 1hxm_B            2 GHLEQPQ--ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETST   79 (242)
T ss_dssp             CEEECCC--SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTE
T ss_pred             CccCcCC--ceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcE
Confidence            3444545  6889999999999999865       9999964332111000            0 34555542      4


Q ss_pred             eEEEEeecccCCCeeEEEEEEcCCC-c------cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccC
Q psy3045          68 GTLIIKEAKVEDSGKYLCVVNNSVG-G------ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE  140 (267)
Q Consensus        68 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  140 (267)
                      .+|.|.+++.+|+|.|+|.+.+... .      ....+.|.|...+.....                     +|......
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~---------------------~p~~~v~~  138 (242)
T 1hxm_B           80 STLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADV---------------------SPKPTIFL  138 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCC---------------------SCBCCCCC
T ss_pred             EEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCc---------------------CCCceEEC
Confidence            5899999999999999999987531 1      112346666542110000                     00000001


Q ss_pred             CceEEEecCCCEEEEeEeCCC-CC-ceEEEEECCc-cCCCC--------CC-----CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-PV-KTISWMKDGK-PVPDH--------NE-----PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~-~~~~~--------~~-----~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +....+..|+.+.|.|.+.+. |. +.+.|++++. .+...        +.     +.|.|..... + |.|+|.|.|..
T Consensus       139 p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~  216 (242)
T 1hxm_B          139 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHEN  216 (242)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETT
T ss_pred             CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCC
Confidence            111134569999999999886 54 7999999987 55321        11     3567765554 4 99999999998


Q ss_pred             CCceEEEEEEE
Q psy3045         205 ESAQASGELKL  215 (267)
Q Consensus       205 ~~~~~~~~l~v  215 (267)
                      +.......+.+
T Consensus       217 ~~~~~~~~~~~  227 (242)
T 1hxm_B          217 NKNGVDQEIIF  227 (242)
T ss_dssp             SGGGSCEEEEE
T ss_pred             CCCCceeEeec
Confidence            76655444443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.78  E-value=2.2e-18  Score=138.89  Aligned_cols=121  Identities=21%  Similarity=0.335  Sum_probs=102.3

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+++  +..+...              ....|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   87 (389)
T 2jll_A            8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG   87 (389)
T ss_dssp             CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence            344777899999999999999999999999  7665431              235799999999999999999999998


Q ss_pred             CceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         206 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       206 ~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .....+.|.|.   .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|+.+..+
T Consensus        88 ~~~~~~~l~V~---~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~  144 (389)
T 2jll_A           88 GHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAK  144 (389)
T ss_dssp             EEEEEEEEEEE---EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCT
T ss_pred             CcceEEEEEEE---eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcc
Confidence            88778888776   5677766665557889999999999999999999999999998754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.78  E-value=2.1e-18  Score=127.27  Aligned_cols=123  Identities=21%  Similarity=0.391  Sum_probs=95.0

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCC------------CC-----CCCeEEeccCCCCCCeEEEEEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------------DH-----NEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~------------~~-----~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.            ..     ....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~   85 (212)
T 1f97_A            6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVS   85 (212)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEE
T ss_pred             ecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEE
Confidence            34555688999999999999988999999999886621            01     23779999999999999999999


Q ss_pred             cCCCC--ceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEE-eecCCCCcEEEEECCE-EcCC
Q psy3045         202 NEQES--AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEISWYLDGK-KLVN  264 (267)
Q Consensus       202 ~~~~~--~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~-~l~~  264 (267)
                      +..+.  ....+.+.|.   .+|.+...+....+.+|+.+.|.|. +.+.|.|.+.|+++|. .+..
T Consensus        86 ~~~g~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~  149 (212)
T 1f97_A           86 EEGGQNYGEVSIHLTVL---VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTA  149 (212)
T ss_dssp             ETTSSSEEEEEEEEEEE---BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-
T ss_pred             ccCCCcccEEEEEEEEE---cCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccc
Confidence            98763  3445555555   3444333333457889999999999 7899999999999999 7754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.78  E-value=3.3e-18  Score=123.56  Aligned_cols=115  Identities=17%  Similarity=0.282  Sum_probs=92.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCC--ceEEEEEEEecccCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES--AQASGELKLGGRFDPP  222 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~~~~p  222 (267)
                      .+.+|+++.|.|.+.+ +.+.+.|+|++.. .......|.|.+++.+|+|.|+|.+.|..+.  ....+.+.+.....+|
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p   95 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKP   95 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTC-CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCC
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCcc-ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCC
Confidence            6889999999999887 7789999999876 3345688999999999999999999997643  2334566665544567


Q ss_pred             eeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         223 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      .+...+ ...+.+|+.+.|.|.+.+.| +.+.|+|+|..+.
T Consensus        96 ~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~  134 (184)
T 2gi7_A           96 SLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAP  134 (184)
T ss_dssp             EEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTT
T ss_pred             EEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCc
Confidence            777665 34678999999999987654 6999999998765

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.78  E-value=5.5e-18  Score=126.04  Aligned_cols=158  Identities=18%  Similarity=0.298  Sum_probs=104.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec---------------cccCCceEEEE------eeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV---------------AVPLNDRVKQV------SGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---------------~~~~~~~~~~~------~~~l~i~~   74 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....               ......|+...      ..+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            4678999999999999874       99998643322111               11123455432      23699999


Q ss_pred             cccCCCeeEEEEEEcCCC--ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          75 AKVEDSGKYLCVVNNSVG--GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      ++.+|+|.|+|.+.+...  .....+.|.|.....  ..+....                      ..+.. . ..|+.+
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~--~~p~v~~----------------------~~~~~-~-~~g~~v  141 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP--TSPKVFP----------------------LSLCS-T-QPDGNV  141 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC--BCCEEEE----------------------EECCS-C-CCTTEE
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCC--CCCeEEE----------------------ecCcc-c-ccCCCE
Confidence            999999999999988641  223334566652111  1111110                      00111 1 568999


Q ss_pred             EEEeEeCC-CCC--ceEEEEECCccCC----------CCCC----CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         153 QFTCKYEG-NPV--KTISWMKDGKPVP----------DHNE----PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       153 ~l~C~~~~-~p~--~~~~W~~~~~~~~----------~~~~----~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +|.|.+.+ .|.  +.+.|++++..+.          .+..    +.|.|.....+|.|.|+|.|.|..+.
T Consensus       142 ~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          142 VIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             EEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            99999988 565  4999999998762          1111    34888888888999999999998754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.78  E-value=2.6e-18  Score=125.63  Aligned_cols=116  Identities=20%  Similarity=0.316  Sum_probs=89.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCCeEEeccCCCCCCeEEEEEEEcCC-C--CceEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ-E--SAQASGEL  213 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~--~~~~~~~l  213 (267)
                      .+.+|++++|.|.+.+.|. .+.|+|++..+.        ......|.|.++..+|+|.|+|.+.|.. +  .......+
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l   93 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL   93 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence            7889999999999988775 799999998763        1246889999999999999999999976 4  33445666


Q ss_pred             EEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         214 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       214 ~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      .|.....+|.+...+. ..+.+|+.+.|.|.+.+. .+.+.|+|+|..+.
T Consensus        94 ~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~  141 (198)
T 1ugn_A           94 VVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEH  141 (198)
T ss_dssp             EEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-CSEEEEEEC-----
T ss_pred             EEcccccCCccccCCc-cccCCCCcEEEEEecCCC-CcEEEEEECCCccC
Confidence            6665334566665443 578899999999999988 78999999998763

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.78  E-value=7.7e-18  Score=130.51  Aligned_cols=168  Identities=17%  Similarity=0.235  Sum_probs=104.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++++|.|.+.+       +.|++...+.....             ......|+...      ..+|.|.+++
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            5789999999999999864       99999643221110             01122344322      3589999999


Q ss_pred             cCCCeeEEEEEEcCC-CccE----EEEEEEEEecc-ccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCC
Q psy3045          77 VEDSGKYLCVVNNSV-GGES----VETVLTVTAPL-AAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGR  150 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~-~~~~----~~~~l~V~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~  150 (267)
                      .+|+|.|+|.+.+.. +...    ..+.|.|.... .........              ....+..+...+....+.+|+
T Consensus       110 ~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~--------------~~~~~~~v~~~p~~~~v~~G~  175 (291)
T 2gki_A          110 SEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSG--------------GGGSDLVMSQSPSSLAVSAGE  175 (291)
T ss_dssp             GGGCEEEEEEEECGGGTTCEEEECCCEEEEECC------------------------------CCCEECSCSEEEEETTS
T ss_pred             HHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCC--------------CCCccceEEcCCCEEEEcCCC
Confidence            999999999999864 2111    12345554310 000000000              000111122234455788999


Q ss_pred             CEEEEeEeCCCCCc------eEEEEECC--ccCC-------------C--------CCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         151 PAQFTCKYEGNPVK------TISWMKDG--KPVP-------------D--------HNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       151 ~v~l~C~~~~~p~~------~~~W~~~~--~~~~-------------~--------~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      +++|.|.+.+.+.+      .+.|+|++  ..+.             .        .....|.|.++..+|+|.|.|.+.
T Consensus       176 ~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  255 (291)
T 2gki_A          176 KVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQS  255 (291)
T ss_dssp             CEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEc
Confidence            99999999988765      89999963  2211             0        112479999999999999999999


Q ss_pred             cCC
Q psy3045         202 NEQ  204 (267)
Q Consensus       202 ~~~  204 (267)
                      +..
T Consensus       256 ~~~  258 (291)
T 2gki_A          256 YYH  258 (291)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            843

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.78  E-value=3.1e-18  Score=127.02  Aligned_cols=117  Identities=21%  Similarity=0.285  Sum_probs=91.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCC--eEEeccCCCCCCeEEEEEEEcCCCCce--EEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEP--VFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGE  212 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~  212 (267)
                      .+.+|++++|.|.+.+ +.+.+.|+|+|..+.        .....  .|.|.+++.+|+|.|+|.+.|..+...  ..+.
T Consensus        19 ~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~   97 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE   97 (218)
T ss_dssp             EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEE
T ss_pred             ccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEE
Confidence            6889999999999876 678999999987653        12345  899999999999999999999765333  2455


Q ss_pred             EEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         213 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       213 l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      +.|.....+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+.
T Consensus        98 l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~  147 (218)
T 1uct_A           98 LVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSL  147 (218)
T ss_dssp             EEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSC
T ss_pred             EEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccc
Confidence            6665444567776655 3478899999999977778888999999998764

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.78  E-value=7e-19  Score=131.28  Aligned_cols=158  Identities=21%  Similarity=0.292  Sum_probs=103.9

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4678999999999999863       99999643321110             01123455443      3589999999


Q ss_pred             cCCCeeEEEEEEcCCC-----c---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          77 VEDSGKYLCVVNNSVG-----G---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~-----~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      .+|+|.|+|.+.+..+     .   ....+.|.|...+.  ..|....                      ..+.. .+..
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~~P~v~~----------------------~~~~~-~~~~  142 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST--KGPSVFP----------------------LAPSS-KSTS  142 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC--BCCEEEE----------------------ECCCT-TCCC
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC--cCCeEEE----------------------ecccc-cccC
Confidence            9999999999998754     1   11234666654210  1111110                      00100 2456


Q ss_pred             CCCEEEEeEeCCC-CCc-eEEEEECCccCCC--------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         149 GRPAQFTCKYEGN-PVK-TISWMKDGKPVPD--------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       149 g~~v~l~C~~~~~-p~~-~~~W~~~~~~~~~--------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |+.+.|.|.+.+. |.+ .+.|++++..+..        .+     .+.|.|.....+| |.|+|.|.|....
T Consensus       143 g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          143 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             CCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             CCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            9999999999886 665 9999999876321        11     1247888888778 9999999997644

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.78  E-value=6e-18  Score=126.52  Aligned_cols=126  Identities=18%  Similarity=0.392  Sum_probs=101.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCC-ceEEEEECCccCC-----------------------------CCCCCeEEeccCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVP-----------------------------DHNEPVFRIDSVRK  190 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~~~~~~-----------------------------~~~~~~l~i~~~~~  190 (267)
                      +....+.+|+.+.|.|.+.+.+. +.+.|++++....                             ......|.|.+++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~   86 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV   86 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence            45568899999999999998884 8999998655421                             12234599999999


Q ss_pred             CCCeEEEEEEEcCC-CCceEEEEEEEecccCCCeeecCCceeEEecCCcE-EEEEEe-ecCCCCcEEEEECCEEcCCCC
Q psy3045         191 EDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY-YFKCIA-SGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       191 ~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +|+|.|+|.+.+.. +.......+.|......|.+...+....+.+|+.+ .|.|.+ .+.|.|.+.|+++|..+....
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            99999999999986 66666777887754455777776666667789988 999999 899999999999999987553

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.77  E-value=8.5e-18  Score=129.51  Aligned_cols=172  Identities=23%  Similarity=0.338  Sum_probs=109.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCccee-------------ccccCCceEEEE-----eeE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK-------------VAVPLNDRVKQV-----SGT   69 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~-------------~~~~~~~~~~~~-----~~~   69 (267)
                      .+.+...+  ..+.+.+|++++|.|.+.+     +.|+++..+....             .......|+...     +.+
T Consensus        24 ~~~v~~~p--~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (279)
T 2wbj_D           24 GAVVSQHP--SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST  101 (279)
T ss_dssp             CCCEEEEC--SEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred             cceEEeCC--CeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence            45666655  6899999999999999976     9999964322111             000123455443     348


Q ss_pred             EEEeecccCCCeeEEEEEEcCCC----c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCce
Q psy3045          70 LIIKEAKVEDSGKYLCVVNNSVG----G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV  143 (267)
Q Consensus        70 l~i~~~~~~d~G~Y~C~~~~~~~----~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  143 (267)
                      |.|.+++.+|+|.|+|.+.+..+    .  ....+.|.|.........|....                      ..+..
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~----------------------~~~~~  159 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAV----------------------FEPSE  159 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEE----------------------EECCH
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEE----------------------ECCCc
Confidence            99999999999999999998432    1  12234566654321111221110                      00111


Q ss_pred             EEEecCCCEEEEeEeCCC-CC-ceEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PV-KTISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVI  200 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~  200 (267)
                      ..+..|+.+.|.|.+.+. |. +.+.|++++..+...              ..      +.|.|.....+| .|.|+|.|
T Consensus       160 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v  239 (279)
T 2wbj_D          160 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQV  239 (279)
T ss_dssp             HHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEE
T ss_pred             ccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEE
Confidence            123468999999999986 43 699999999876431              11      236676666654 67899999


Q ss_pred             EcCCCCce
Q psy3045         201 RNEQESAQ  208 (267)
Q Consensus       201 ~~~~~~~~  208 (267)
                      .|......
T Consensus       240 ~n~~~~~~  247 (279)
T 2wbj_D          240 QFYGLSEN  247 (279)
T ss_dssp             EECCBCTT
T ss_pred             EeCCCCCC
Confidence            99765443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.77  E-value=1.2e-18  Score=130.37  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=103.1

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeec
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEA   75 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~   75 (267)
                      ..+.+.+|++++|.|.+.+         +.|++...+.....            ......|+...      +.+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4678999999999999863         89998643321110            01123455542      368999999


Q ss_pred             ccCCCeeEEEEEEcCCC------c---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          76 KVEDSGKYLCVVNNSVG------G---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~------~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      +.+|+|.|+|.+.+..+      .   ....+.|.|....  ...|...                      .. +....+
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~----------------------~~-~~~~~~  142 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK--TTAPSVY----------------------PL-APVCGD  142 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC--CBCCEEE----------------------EE-CC----
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC--CCCCEEE----------------------Ee-cccccc
Confidence            99999999999988654      1   0122455555311  0111111                      00 111135


Q ss_pred             ecCCCEEEEeEeCCC-CCc-eEEEEECCccCCC---------C---CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         147 DFGRPAQFTCKYEGN-PVK-TISWMKDGKPVPD---------H---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~~~~---------~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      ..|+.+.|.|.+.+. |.+ .+.|++++..+..         +   ..+.|.|.....++ |.|+|.|.|..+....
T Consensus       143 ~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          143 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             -CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             cCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence            679999999999886 766 9999998876421         0   12347787777756 9999999998766543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.77  E-value=2.5e-18  Score=127.47  Aligned_cols=126  Identities=28%  Similarity=0.514  Sum_probs=98.9

Q ss_pred             ccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeE----EeccCCCCCCeEEEEEEEc
Q psy3045         136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVF----RIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       136 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l----~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...+    .|.++..+|+|.|+|.+.|
T Consensus        11 ~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n   90 (217)
T 2vr9_A           11 RIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKN   90 (217)
T ss_dssp             EEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEE
T ss_pred             EEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEec
Confidence            33344556688999999999999998989999999998875431         1222    5778899999999999999


Q ss_pred             CCCCce-EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEECCEEcC
Q psy3045         203 EQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       203 ~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~l~  263 (267)
                      ..+... ....+.+..  .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.
T Consensus        91 ~~g~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           91 RVGQAVSRHASLQIAV--LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             TTEEEECCCEEEEECE--ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             CCCccccccceEEEEE--eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            876542 244555543  45666666677788999999999999 899999999999999887

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.77  E-value=5.2e-18  Score=124.55  Aligned_cols=116  Identities=13%  Similarity=0.242  Sum_probs=91.4

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCce-EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEeccc
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF  219 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  219 (267)
                      +....+.+|+.+.|.|.+.+.|.+. +.|++++..+... ...|.|.+++.+|+|.|+|.+.|...  .....+.|.   
T Consensus        14 p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~~--s~~~~l~V~---   87 (204)
T 3sgj_C           14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-ASSYFIDAATVDDSGEYRCQTQLSTL--SDPVQLEVH---   87 (204)
T ss_dssp             SCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-SSEEEESSCCGGGCEEEEEEETTSBC--CCCEEEEEE---
T ss_pred             CCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-ccEEEEecccccCCEEEEEEeCCCcc--cccEEEEEe---
Confidence            3435788999999999999987664 9999999987644 48999999999999999999987533  334555554   


Q ss_pred             CCCeeecCCceeEEecCCcEEEEEEeecC-CCCcEEEEECCEEcC
Q psy3045         220 DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLV  263 (267)
Q Consensus       220 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~l~  263 (267)
                      .+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+.
T Consensus        88 ~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~  131 (204)
T 3sgj_C           88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK  131 (204)
T ss_dssp             CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEee
Confidence            3455444443 578899999999999765 557999999998764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.77  E-value=5e-19  Score=140.10  Aligned_cols=163  Identities=19%  Similarity=0.310  Sum_probs=114.8

Q ss_pred             eeEEecCCCeEEEEEE-----ecc-----eeeeecccCcceeccccCCceEEEE--eeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCE-----AQE-----NMWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~-----~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ....+.+|+++.|.|.     +.+     +.|++++....     ....++...  .+.|.|.+++..|+|.|+|.+.|.
T Consensus       128 ~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  202 (339)
T 3o4o_C          128 YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD-----KDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFA  202 (339)
T ss_dssp             EEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCC-----TTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECC
T ss_pred             cceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCC-----CCCceeEEcCCcceEEEcccCHhhCeEEEEEEEEC
Confidence            3457899999999999     554     99999633211     111233322  247999999999999999999998


Q ss_pred             CCc----cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe---CCCC-
Q psy3045          91 VGG----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY---EGNP-  162 (267)
Q Consensus        91 ~~~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~p-  162 (267)
                      .+.    ....+.|.|...+... .+                       .+...+....+..|+.+.|.|.+   .+.| 
T Consensus       203 ~g~~~~~~~~~~~l~V~~~~~~~-~P-----------------------~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~  258 (339)
T 3o4o_C          203 HEGQQYNITRSIELRIKKKKEET-IP-----------------------VIISPLKTISASLGSRLTIPCKVFLGTGTPL  258 (339)
T ss_dssp             BTTBCCEEEEEEEEEEECCCCCC-CC-----------------------EECCCSCCCCCCCCSCCCCCCCEEESSSCCS
T ss_pred             CCCeEEEEEEEEEEEEEcCCCCC-CC-----------------------EEecCCceeEeccCCCEEEEEEEECCCCCCC
Confidence            774    3556666666432100 00                       01111233367789999999999   8888 


Q ss_pred             CceEEEEECCccCCCC---------------CCC------eEEeccCCCCCC-eEEEEEEEcCCCCceEEEEEE
Q psy3045         163 VKTISWMKDGKPVPDH---------------NEP------VFRIDSVRKEDK-GMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       163 ~~~~~W~~~~~~~~~~---------------~~~------~l~i~~~~~~d~-g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+.+.|++++..+...               ...      .|.|.++..+|. |.|+|.|.|..|.....+.+.
T Consensus       259 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             SCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred             CceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence            8899999999876421               112      799999999997 999999999998776655443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.77  E-value=1.5e-18  Score=127.98  Aligned_cols=124  Identities=30%  Similarity=0.520  Sum_probs=96.0

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCe-----EEeccCCCCCCeEEEEEEEcC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPV-----FRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~-----l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...     +.+.++..+|+|.|+|.+.+.
T Consensus        15 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~   94 (212)
T 2v9r_A           15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY   94 (212)
T ss_dssp             CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEET
T ss_pred             CCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECC
Confidence            3445588899999999999988888999999998765321           122     334456899999999999998


Q ss_pred             CCCc-eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEECCEEcCCC
Q psy3045         204 QESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       204 ~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .+.. .....+.+..  .++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|+.+..+
T Consensus        95 ~g~~~~~~~~l~V~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~  156 (212)
T 2v9r_A           95 LGEAVSHDASLEVAI--LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK  156 (212)
T ss_dssp             TEEEECCCEEEEECE--ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT
T ss_pred             CCceeecceEEEEEe--ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC
Confidence            7654 2345555543  45556666667789999999999999 89999999999999998754

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.77  E-value=9.6e-19  Score=132.87  Aligned_cols=167  Identities=16%  Similarity=0.195  Sum_probs=104.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......             .....|+...      ..+|+|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            4678999999999999854       999986433221111             1123444432      2469999999


Q ss_pred             cCCCeeEEEEEEcCC----CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045          77 VEDSGKYLCVVNNSV----GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA  152 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v  152 (267)
                      .+|+|.|+|.+.+..    ......+.|.|....  ...+....                       ......+..|+.+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~-----------------------~~~~~~~~~g~~v  142 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK--TTPPSVYP-----------------------LAPGSAAQTNSMV  142 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC--CBCCEEEE-----------------------ECC------CCEE
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccC--CCCCeEEE-----------------------ecCCcccCCCCcE
Confidence            999999999998752    112233456664211  11111110                       0111145569999


Q ss_pred             EEEeEeCC-CCCc-eEEEEECCccCC--------CCC----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         153 QFTCKYEG-NPVK-TISWMKDGKPVP--------DHN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       153 ~l~C~~~~-~p~~-~~~W~~~~~~~~--------~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .|.|.+.+ .|.+ .+.|++++..+.        ...    .+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       143 ~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          143 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            99999988 5655 899999887431        011    1467888888888 9999999998876555544443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.77  E-value=7.7e-18  Score=125.84  Aligned_cols=123  Identities=26%  Similarity=0.503  Sum_probs=99.5

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.+.|..+......
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            44578899999999999998988999999998875432          24799999999999999999999888777777


Q ss_pred             EEEEecccC-CCeeec-CCceeEEecCCcEEEEEEeecCCCCcEEEEE----CCEEcCC
Q psy3045         212 ELKLGGRFD-PPVIKE-SFSDETLNPGPNYYFKCIASGNPTPEISWYL----DGKKLVN  264 (267)
Q Consensus       212 ~l~v~~~~~-~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~l~~  264 (267)
                      .+.|..... +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+..
T Consensus       107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~  165 (231)
T 3ojm_B          107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP  165 (231)
T ss_dssp             EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCT
T ss_pred             EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccC
Confidence            777764322 233333 3456788999999999999999999999999    7776643

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.77  E-value=5.3e-18  Score=124.29  Aligned_cols=116  Identities=16%  Similarity=0.256  Sum_probs=88.2

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECC-ccCC-----CCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDG-KPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR  218 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~-~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  218 (267)
                      .+.+|+.+.|.|.+.|.|.+.+.|+++. .++.     ......|.|.+++.+|+|.|.|.|.|..+.....+.|.|.. 
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~-   90 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS-   90 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEB-
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEe-
Confidence            4458999999999999999999999842 2221     12345799999999999999999999887666667777764 


Q ss_pred             cCCCeeecCCceeEEecCCcEEEEEEeecCCC---CcEEEEECCEEcC
Q psy3045         219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPT---PEISWYLDGKKLV  263 (267)
Q Consensus       219 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~l~  263 (267)
                       .|..+...+. ..+.+|+.+.|.|.+.+.++   +.|.|+++|+.|.
T Consensus        91 -~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           91 -FPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             -CCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             -CCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence             2322222223 56889999999999998644   3799999998764

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.76  E-value=2e-18  Score=130.07  Aligned_cols=169  Identities=22%  Similarity=0.301  Sum_probs=106.8

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCccee-----------ccccCCceEEEE-----eeEEEEee
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRK-----------VAVPLNDRVKQV-----SGTLIIKE   74 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~l~i~~   74 (267)
                      .+...+  ..+.+.+|++|.|.|.+.+    +.|++...+....           .......|+...     +.+|.|.+
T Consensus         4 ~v~~~p--~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            4 GVVQSP--RHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCEEEC--SEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             ccccCc--ceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            344444  6789999999999999877    9999943322111           111122344432     34799999


Q ss_pred             cccCCCeeEEEEEEcCCC---ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          75 AKVEDSGKYLCVVNNSVG---GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      ++.+|+|.|+|.+.+..+   .......|.|.........+...                      ...+....+..|+.
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~----------------------~~~~~~~~~~~g~~  139 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVS----------------------LFEPSKAEIANKQK  139 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEE----------------------EECCCHHHHHHHSE
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeE----------------------EeCCchhhcccCCc
Confidence            999999999999984322   12333456665322111122111                      01111123445899


Q ss_pred             EEEEeEeCC-CCCc-eEEEEECCccCCCCC----------C------CeEEeccCCCCC-CeEEEEEEEcCCCCc
Q psy3045         152 AQFTCKYEG-NPVK-TISWMKDGKPVPDHN----------E------PVFRIDSVRKED-KGMYQCVIRNEQESA  207 (267)
Q Consensus       152 v~l~C~~~~-~p~~-~~~W~~~~~~~~~~~----------~------~~l~i~~~~~~d-~g~y~C~~~~~~~~~  207 (267)
                      +.|.|.+.+ .|.+ .+.|+++|..+....          .      +.|.|.....+| .|.|+|.|.|.....
T Consensus       140 v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          140 ATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             eEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            999999988 4545 899999998875321          1      237777777777 679999999876443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=125.92  Aligned_cols=125  Identities=25%  Similarity=0.501  Sum_probs=100.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.++..+|+|.|+|.+.+..+.....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            34558889999999999999998999999999877532          23579999999999999999999988877777


Q ss_pred             EEEEEecccC-CCeee-cCCceeEEecCCcEEEEEEeecCCCCcEEEEE----CCEEcCCC
Q psy3045         211 GELKLGGRFD-PPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYL----DGKKLVNA  265 (267)
Q Consensus       211 ~~l~v~~~~~-~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~l~~~  265 (267)
                      ..+.+..... +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+..+
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~  162 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD  162 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTT
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCC
Confidence            7777764322 23333 34556678899999999999999999999999    88777544

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.76  E-value=8.6e-18  Score=120.37  Aligned_cols=118  Identities=14%  Similarity=0.273  Sum_probs=91.5

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCce-EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      ..+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+.  ....+.|. 
T Consensus        12 ~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~s--~~~~l~V~-   87 (175)
T 1fnl_A           12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-QASSYFIDAATVNDSGEYRCQTNLSTLS--DPVQLEVH-   87 (175)
T ss_dssp             EESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-SCSEEEESSCCGGGCEEEEEECSSSCCC--CCEEEEEE-
T ss_pred             EcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-CceEEEEeCCCcccCEEEEEEeeCCccc--ccEEEEEe-
Confidence            334444788999999999999887665 889999988753 5679999999999999999999986543  34455554 


Q ss_pred             ccCCCeeecCCceeEEecCCcEEEEEEeecCCCC-cEEEEECCEEcC
Q psy3045         218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  263 (267)
Q Consensus       218 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~l~  263 (267)
                        .++.+... ....+.+|+.+.|.|.+.+.+++ .+.|+++|..+.
T Consensus        88 --~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~  131 (175)
T 1fnl_A           88 --IGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK  131 (175)
T ss_dssp             --CSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             --CCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc
Confidence              23333333 33568899999999999987765 999999998764

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.76  E-value=6.4e-18  Score=129.58  Aligned_cols=171  Identities=20%  Similarity=0.336  Sum_probs=107.4

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccC-----------Cc-eEEEE-----eeEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPL-----------ND-RVKQV-----SGTLII   72 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~-----------~~-~~~~~-----~~~l~i   72 (267)
                      +.+...+  ..+.+.+|++++|.|.+.+    +.|++...+.........           .. |+...     +.+|.|
T Consensus        28 ~~v~~~p--~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           28 MKVIQTP--RYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             CCCEEEC--SEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             eeEEeCC--CeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            4455444  6789999999999999876    999985333221111100           01 43322     458999


Q ss_pred             eecccCCCeeEEEEEEcCCC----ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          73 KEAKVEDSGKYLCVVNNSVG----GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        73 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      .+++.+|+|.|+|.+.+...    .....+.|.|.........|....                      ..+....+..
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~----------------------~~~~~~~~~~  163 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV----------------------FEPSEAEISH  163 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE----------------------EECCHHHHHH
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE----------------------ECCCcccccc
Confidence            99999999999999986422    122334566654222111222110                      0011113345


Q ss_pred             CCCEEEEeEeCC-CCCc-eEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEG-NPVK-TISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~-~p~~-~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~  205 (267)
                      |+.++|.|.+.+ .|.+ .+.|+++|..+...              ..      ..|.+.....+| .|.|+|.|.|...
T Consensus       164 g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          164 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred             CCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence            899999999988 5655 89999999877531              11      235666666666 9999999999764


Q ss_pred             Cce
Q psy3045         206 SAQ  208 (267)
Q Consensus       206 ~~~  208 (267)
                      ...
T Consensus       244 ~~~  246 (270)
T 3qib_D          244 SEN  246 (270)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            433

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.76  E-value=7.7e-18  Score=120.75  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=89.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR  218 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  218 (267)
                      .+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+..  ...+.|.  
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~--~~~l~V~--   84 (176)
T 1f2q_A           10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-TNSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLEVF--   84 (176)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-CSSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEEEE--
T ss_pred             CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-CceEEEEeccceecCEEEEEEcCCccccc--cEEEEEe--
Confidence            3444578899999999999988764 7999999988753 57899999999999999999998866543  3444554  


Q ss_pred             cCCCeeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEcC
Q psy3045         219 FDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  263 (267)
Q Consensus       219 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l~  263 (267)
                       .++.+... ....+.+|+.+.|.|.+. +.|.+.+.|+++|+.+.
T Consensus        85 -~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (176)
T 1f2q_A           85 -SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK  128 (176)
T ss_dssp             -CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             -CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe
Confidence             23333322 335788999999999995 56677999999999885

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.76  E-value=5.2e-18  Score=122.73  Aligned_cols=116  Identities=16%  Similarity=0.318  Sum_probs=86.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEecc-CCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCC-
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP-  222 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p-  222 (267)
                      ....|+.+.|.|.+.+ +. .+.|+|+|..+....+..|.|.+ +..+|+|.|+|.|.|..+.....+.+.+.....+. 
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~   87 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKK   87 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccccccc
Confidence            4567999999999887 43 49999999999876778999999 99999999999999998875555555444322111 


Q ss_pred             --------------eeecC----Cce---eEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         223 --------------VIKES----FSD---ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       223 --------------~~~~~----~~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                                    .+...    ...   ..+.+|+.+.|.|.+   |.|.|.|+|||+.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~  148 (186)
T 1jbj_A           88 DAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPL  148 (186)
T ss_dssp             CCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCS
T ss_pred             ccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECccc
Confidence                          00000    001   123489999999988   88999999999998643

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.75  E-value=2.8e-19  Score=131.69  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=93.9

Q ss_pred             ecCCCeEEEEEEecc---------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          27 KPGGESFALLCEAQE---------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        27 v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      +.+|++++|.|.+.+         +.|++++........   .............|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            889999999999752         899996422110000   00111122334679999999999999999999987754


Q ss_pred             EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC-ceEEEEECC
Q psy3045          95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTISWMKDG  172 (267)
Q Consensus        95 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~  172 (267)
                      .....+.+  .......+....                      ..... ....|+.+.|.|.+.|. |. +.+.|+++|
T Consensus        95 ~~~~~v~~--~~~~~~~P~v~~----------------------~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 2vol_A           95 PIEKTISK--TKGRPKAPQVYT----------------------LPPPK-EQMAKDKVSLTCMITDFFPEDITVEWESNG  149 (207)
T ss_dssp             CEEEEECC--CCCCCBCCEEEE----------------------ECCCT-GGGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ceEEEecc--CCCCCcCCeEEE----------------------eCCCH-HHhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence            22222211  001111111110                      00000 11248899999999985 44 499999999


Q ss_pred             ccCCCC--------CCC------eEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         173 KPVPDH--------NEP------VFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       173 ~~~~~~--------~~~------~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..+...        ...      .|.+.....+|.|.|+|.|.|....
T Consensus       150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            876431        111      2444444556789999999998644

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.75  E-value=6.1e-18  Score=127.79  Aligned_cols=169  Identities=24%  Similarity=0.331  Sum_probs=105.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceec-----------cccCC-ceEEEE-----eeEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKV-----------AVPLN-DRVKQV-----SGTLII   72 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~-----------~~~~~-~~~~~~-----~~~l~i   72 (267)
                      +.+...+  ..+.+.+|++++|.|....    +.|++...+.....           ...+. .|+...     +.+|.|
T Consensus         3 ~~v~~~p--~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B            3 PKVLQIP--SHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             CCCEEEC--SEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             cceEeCC--ceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence            3455555  6789999999999994433    99998422221100           01111 444432     348999


Q ss_pred             eecccCCCeeEEEEEEcCC----CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          73 KEAKVEDSGKYLCVVNNSV----GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        73 ~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      .+++.+|+|.|+|.+.+..    ........|.|.........+...                      ...+....+..
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~----------------------~~~~~~~~~~~  138 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVA----------------------VFEPSEAEISH  138 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEE----------------------EECCCHHHHHH
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEE----------------------EeCCCcccccC
Confidence            9999999999999998532    122334456665421111122111                      01111113455


Q ss_pred             CCCEEEEeEeCCC-CCc-eEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGN-PVK-TISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~-p~~-~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~  205 (267)
                      |+.+.|.|.+.+. |.+ .+.|+++|..+...              ..      ..|.|.....+| .|.|+|.|.|...
T Consensus       139 g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          139 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            8999999999885 444 89999999877531              11      236777777777 8999999998764


Q ss_pred             C
Q psy3045         206 S  206 (267)
Q Consensus       206 ~  206 (267)
                      .
T Consensus       219 ~  219 (245)
T 4ei6_B          219 S  219 (245)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.75  E-value=7.1e-18  Score=129.19  Aligned_cols=180  Identities=18%  Similarity=0.269  Sum_probs=105.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----------eeeeecccCcceeccc--------cCCceEEEE----eeEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAV--------PLNDRVKQV----SGTL   70 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~--------~~~~~~~~~----~~~l   70 (267)
                      .+.+...|  ..+.+.+|++++|.|.+.+          +.|++...+.......        ....|+...    ..+|
T Consensus        15 ~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L   92 (268)
T 1x9q_A           15 DVVMTQTP--LSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTL   92 (268)
T ss_dssp             CCCEEEEC--SEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             cceEEeeC--CeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEE
Confidence            35565555  6789999999999999742          8899864332111000        123444432    3489


Q ss_pred             EEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccc---cCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045          71 IIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAG---VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI  146 (267)
Q Consensus        71 ~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  146 (267)
                      .|.+++.+|+|.|+|.+.+..+. ......|.|...+...   ..+... ...... ...+       ......+....+
T Consensus        93 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~-~~~~~~-~~~~-------~v~~~~~~~~~v  163 (268)
T 1x9q_A           93 KINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDD-AKKDDA-KKDG-------GVKLDETGGGLV  163 (268)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEC--------------------------CGG-------GCEEEEECCEEE
T ss_pred             EECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCcccccccc-cccccc-cccc-------ceEEECCCceEe
Confidence            99999999999999999887542 1223455555432100   000000 000000 0000       000011223478


Q ss_pred             ecCCCEEEEeEeCCCC--CceEEEEECC--ccC--------------------CCC----------CCCeEEeccCCCCC
Q psy3045         147 DFGRPAQFTCKYEGNP--VKTISWMKDG--KPV--------------------PDH----------NEPVFRIDSVRKED  192 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~--------------------~~~----------~~~~l~i~~~~~~d  192 (267)
                      .+|++++|.|.+.+.+  .+.+.|++++  ..+                    ...          ....|.|.+++.+|
T Consensus       164 ~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  243 (268)
T 1x9q_A          164 QPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVED  243 (268)
T ss_dssp             CTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHH
Confidence            8999999999998875  3799999853  211                    000          12479999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+.+.
T Consensus       244 sG~Y~C~a~~~  254 (268)
T 1x9q_A          244 TGIYYCTGASY  254 (268)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEccC
Confidence            99999999874

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.75  E-value=1.4e-17  Score=121.93  Aligned_cols=117  Identities=12%  Similarity=0.200  Sum_probs=91.4

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCC----------CCCCeEEeccCCCCCCeEEEEEEEcCC-----CCce
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNEQ-----ESAQ  208 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~  208 (267)
                      ..+.+|++++|.|.+.+ +.+.+.|+|+|..+..          .....|.|.+++.+|+|.|+|.+.+..     ....
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s   95 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS   95 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence            36789999999999874 6779999999987531          234679999999999999999998642     1223


Q ss_pred             EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         209 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       209 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      ..+.|.|...+.+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+.
T Consensus        96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A           96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHE  148 (201)
T ss_dssp             CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSC
T ss_pred             CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccC
Confidence            455677765556677776665 47889999999999986 568999999998764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.75  E-value=5.4e-18  Score=124.72  Aligned_cols=123  Identities=21%  Similarity=0.404  Sum_probs=95.1

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccC----------CC--C-----CCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV----------PD--H-----NEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~----------~~--~-----~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+          ..  .     ....|.|.++..+|+|.|+|.+.+
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~   89 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (209)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEec
Confidence            344557888999999999999899999999987662          10  1     137899999999999999999999


Q ss_pred             CCCCce--EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEECCEEcCCC
Q psy3045         203 EQESAQ--ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       203 ~~~~~~--~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~l~~~  265 (267)
                      ..+...  ....+.+.   .+|.+........+.+|+.+.|.|.+ .+.|.|.+.|+++|+.+..+
T Consensus        90 ~~g~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~  152 (209)
T 1nbq_A           90 EGGNSYGEVKVKLIVL---VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTN  152 (209)
T ss_dssp             TTSSCEECCEEECCEE---BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSC
T ss_pred             CCCCccceEEEEEEEe---cCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCc
Confidence            865333  34455554   34544444445578899999999997 89999999999999888654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.75  E-value=3.8e-17  Score=120.97  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=116.4

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~   82 (267)
                      .+|.|. .+  ..+.+.+|+++.|.|.+.+     +.|++++....    .....++...    ...|.|.++...|+|.
T Consensus        18 ~~P~~~-~p--~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   90 (215)
T 3mtr_A           18 YAPKLQ-GP--VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP----SSNYSNIKIYNTPSASYLEVTPDSENDFGN   90 (215)
T ss_dssp             EEEEEE-CC--SEEEECTTCCEEEEEEEEEESCCEEEEEETTEESS----CSSSCSEEEEEETTEEEEEECCCSGGGCEE
T ss_pred             cCCccc-CC--ceEEEECCCCEEEEEEEeecCCCEEEEEECCeECC----CCCCccEEEecCCCeeEEEEecCChhhCeE
Confidence            468884 44  5689999999999999988     99999633211    1111233322    4689999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC---
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE---  159 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~---  159 (267)
                      |+|.+.|..|.....+.|.|...+....   ...                            ....+..+.|.|...   
T Consensus        91 Y~C~a~n~~g~~~~~~~l~v~~~P~~p~---~~~----------------------------~~~~~~~~~l~w~~p~~~  139 (215)
T 3mtr_A           91 YNCTAVNRIGQESLEFILVQADTPSSPS---IDQ----------------------------VEPYSSTAQVQFDEPEAT  139 (215)
T ss_dssp             EEEEEECSSCEEEEEEEEEECCCCCCCE---EEE----------------------------EEEETTEEEEEEECCSCC
T ss_pred             EEEEEEECCCceEEEEEEEECCCCCCCc---ceE----------------------------EEEecceEEEEEecCCcc
Confidence            9999999999888888888876544221   110                            112356688888632   


Q ss_pred             -CCCCc--eEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         160 -GNPVK--TISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       160 -~~p~~--~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                       +.|..  .+.|.+++...-..         ....+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       140 ~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          140 GGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             CSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             CCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence             22333  47788877542111         12789999999999999999999999877665555543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.75  E-value=2.5e-17  Score=129.69  Aligned_cols=125  Identities=21%  Similarity=0.437  Sum_probs=96.7

Q ss_pred             cCCceEEEecCCCEEEEeEeCCC-CCceEEEEECCccCCC-----------------------CCCCeEEeccCCCCCCe
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPD-----------------------HNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~-----------------------~~~~~l~i~~~~~~d~g  194 (267)
                      ..+....+.+|+.+.|.|.+.+. |.+.+.|++++.+...                       .....|.|.+++.+|+|
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G   87 (327)
T 2wng_A            8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAG   87 (327)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCE
T ss_pred             cCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCe
Confidence            44556689999999999999987 8889999998865320                       23467999999999999


Q ss_pred             EEEEEEEcCCCCce-----EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCCC
Q psy3045         195 MYQCVIRNEQESAQ-----ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA  265 (267)
Q Consensus       195 ~y~C~~~~~~~~~~-----~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~~  265 (267)
                      .|+|.+.|..+...     ....|.|.....+|.+.. + ...+.+|+.+.|.|.+.|.|++  .+.|+++|+.+..+
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~-~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~  163 (327)
T 2wng_A           88 TYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-P-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF  163 (327)
T ss_dssp             EEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC-C-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred             EEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec-c-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc
Confidence            99999999765311     234666665444555552 2 3567899999999999998876  89999999988643

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.75  E-value=7e-18  Score=128.53  Aligned_cols=158  Identities=21%  Similarity=0.262  Sum_probs=102.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|+++..+......             .....|+...      +.+|.|.+++
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   93 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT   93 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence            5778999999999999863       999997433211110             0123455432      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCcc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEE
Q psy3045          77 VEDSGKYLCVVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQ  153 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~  153 (267)
                      .+|+|.|+|.+.+..+..   ...+.|.|....  ...|....                      ..+. ..+..|+.++
T Consensus        94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~----------------------~~p~-~~v~~g~~v~  148 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK--TTAPSVYP----------------------LAPV-CGDTTGSSVT  148 (261)
T ss_dssp             GGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEE----------------------ECCC-CC--CCSEEE
T ss_pred             cccCeEEEEEEecCCCcceEECCCEEEEEccCC--CCCCeEEE----------------------eCCC-ccccCCCcEE
Confidence            999999999999864311   123456665311  01111110                      0011 1345699999


Q ss_pred             EEeEeCCC-CCc-eEEEEECCccCCCC------------CCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         154 FTCKYEGN-PVK-TISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       154 l~C~~~~~-p~~-~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |.|.+.+. |.+ .+.|++++..+...            ..+.|.|.....+| |.|+|.|.|....
T Consensus       149 L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          149 LGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            99999875 665 99999998765310            02457888887777 9999999997644

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.75  E-value=1.4e-17  Score=122.97  Aligned_cols=122  Identities=16%  Similarity=0.315  Sum_probs=92.0

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      ...+.+|+.+.|.|.+.+.+.+.+.|+++  +....                     ......|.|.+++.+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            55889999999999999889999999983  22110                     11234699999999999999999


Q ss_pred             EEcCCC---CceEEEEEEEeccc-CCCeeecCCceeEEecCCcEEEEEEeecC-CC-CcEEEEECCEEcCC
Q psy3045         200 IRNEQE---SAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  264 (267)
Q Consensus       200 ~~~~~~---~~~~~~~l~v~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~l~~  264 (267)
                      +.+..+   .......+.|.... .+|.+...+....+.+|+.+.|.|.+.|. |+ +.+.|+++|+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            999876   23334556665322 46777665555555689999999999986 44 39999999998864

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.6e-17  Score=120.41  Aligned_cols=115  Identities=15%  Similarity=0.213  Sum_probs=89.0

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCCeEEeccCCCCCCeEEEEEEEcCCCC--ceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES--AQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~  214 (267)
                      .+.+|++++|.|.+.+. .+.+.|+|++..+.        ......|.|.+++.+|+|.|+|.+.+..+.  ....+.|.
T Consensus        14 ~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence            68889999999998753 46899999987642        234578999999999999999999886432  23355666


Q ss_pred             EecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       215 v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      |...+.+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+
T Consensus        93 V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  138 (188)
T 1oll_A           93 VTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSS  138 (188)
T ss_dssp             EESCSCCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSC
T ss_pred             ecccCCCCeEEECCC-CccccCCEEEEEEEcCC-CCCEEEEEECCccc
Confidence            665445677766553 46889999999999875 45799999999765

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.74  E-value=2.9e-17  Score=124.69  Aligned_cols=161  Identities=19%  Similarity=0.287  Sum_probs=100.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc-----------CCc-eEEEEeeE---EEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP-----------LND-RVKQVSGT---LIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~-----------~~~-~~~~~~~~---l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++++|.|.+.+     +.|++...+........           ... |+......   |.|.+++.+|+|.
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG~   88 (253)
T 3to4_D            9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRT   88 (253)
T ss_dssp             SEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCEE
T ss_pred             CeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCeE
Confidence            5788999999999998776     99998533322111110           112 44432211   9999999999999


Q ss_pred             EEEEEEcCCCc------cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          83 YLCVVNNSVGG------ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        83 Y~C~~~~~~~~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      |+|.+.+..+.      ......|.|.........|.....                      .+....+..|+.++|.|
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~----------------------~~~~~~~~~g~~~~L~C  146 (253)
T 3to4_D           89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVF----------------------EPSEAEISHTQKATLVC  146 (253)
T ss_dssp             EEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEE----------------------ECCHHHHHHHSEEEEEE
T ss_pred             EEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEe----------------------CCChhhcccCCceEEEE
Confidence            99999866431      122335556542221122222100                      01111223468899999


Q ss_pred             EeCC-CCCc-eEEEEECCccCCCC--------------CC------CeEEeccCCCCC-CeEEEEEEEcCCC
Q psy3045         157 KYEG-NPVK-TISWMKDGKPVPDH--------------NE------PVFRIDSVRKED-KGMYQCVIRNEQE  205 (267)
Q Consensus       157 ~~~~-~p~~-~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~  205 (267)
                      .+.+ .|.+ .+.|+++|..+...              ..      +.|.+.....+| .|.|+|.|.|...
T Consensus       147 ~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          147 LATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             EEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            9998 4655 89999999877531              11      246666666666 6799999999753

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=121.91  Aligned_cols=124  Identities=23%  Similarity=0.301  Sum_probs=95.8

Q ss_pred             CceEEEecCCCEEEEeE-eCCCCC-ceEEEEECCccCCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         141 PTVQTIDFGRPAQFTCK-YEGNPV-KTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~-~~~~p~-~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      +....+.+|+.+.|.|. +.+.|. +.+.|++++..+..         .....|.|.++..+|+|.|+|.+.+..+....
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   94 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV   94 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence            34558899999999999 888888 99999999987631         23577999999999999999999986644433


Q ss_pred             ---EEEEEEecc----cCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCC
Q psy3045         210 ---SGELKLGGR----FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       210 ---~~~l~v~~~----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~  264 (267)
                         ...+.+...    ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~  156 (201)
T 3s97_C           95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS  156 (201)
T ss_dssp             ECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT
T ss_pred             hhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC
Confidence               222222211    1245555555577889999999999999999999999999987764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.74  E-value=1.9e-17  Score=122.38  Aligned_cols=125  Identities=18%  Similarity=0.327  Sum_probs=92.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cC----------CC-----------CCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PV----------PD-----------HNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~----------~~-----------~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++.  .+          ..           .....|.|.+++.+|+|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            445588999999999999999888999998532  11          00           11237999999999999999


Q ss_pred             EEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCCC
Q psy3045         198 CVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       198 C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~~  265 (267)
                      |.+.+..+.... ...+.|.....+|.+..........+|+.+.|.|.+.| .|++ .+.|+++|+.+..+
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~  158 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  158 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcce
Confidence            999987654322 33566654444677766444334457999999999987 5555 89999999988654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.74  E-value=2.6e-17  Score=124.50  Aligned_cols=124  Identities=21%  Similarity=0.393  Sum_probs=95.6

Q ss_pred             CceEEEecCCCEEEEeEeCC---CCCceEEEEECCccCC--------------------------------------CCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVP--------------------------------------DHN  179 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~---~p~~~~~W~~~~~~~~--------------------------------------~~~  179 (267)
                      +....+.+|+.+.|.|.+.+   .+.+.+.|++++....                                      ...
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            34558889999999999886   7788999999875430                                      001


Q ss_pred             CCeEEeccCCCCCCeEEEEEEEcCCCCc-----eEEEEEEEecccCCCeeecC-CceeEEecCCcEEEEEEeecCCCCcE
Q psy3045         180 EPVFRIDSVRKEDKGMYQCVIRNEQESA-----QASGELKLGGRFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTPEI  253 (267)
Q Consensus       180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~i  253 (267)
                      ...|.|.+++.+|+|.|+|.+.+..+..     .....|.|.....+|.+... +....+.+|+.+.|.|.+.+.|.|.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            3589999999999999999999977643     33666777653334555443 34566778999999999999999999


Q ss_pred             EEEECCEEcCC
Q psy3045         254 SWYLDGKKLVN  264 (267)
Q Consensus       254 ~W~~~~~~l~~  264 (267)
                      .|+++|..+..
T Consensus       169 ~W~k~~~~~~~  179 (250)
T 2fbo_J          169 TWYTGPTFFEN  179 (250)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEeCCCcccc
Confidence            99999987754

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.74  E-value=2.1e-17  Score=118.43  Aligned_cols=113  Identities=13%  Similarity=0.241  Sum_probs=85.2

Q ss_pred             EEecCCCEEEEeEeCC--CCCceEEEEECCccCC----------C------CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVP----------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~--~p~~~~~W~~~~~~~~----------~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.+|+++.|.|....  .+.+.+.|+|++..+.          .      ..+..|.|.++..+|+|.|+|.+.|..+.
T Consensus         7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~   86 (176)
T 1hng_A            7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   86 (176)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCC
Confidence            6788999999995433  5577999999985321          1      12456999999999999999999999887


Q ss_pred             c--eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         207 A--QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       207 ~--~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .  ...+.|.|......|.+.        ..+..+.|.|.+.|.|+|.|.|+++|+.+..+
T Consensus        87 ~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~  139 (176)
T 1hng_A           87 RILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSL  139 (176)
T ss_dssp             EEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCC
Confidence            6  555666665432233332        23456899999999999999999999988654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.74  E-value=3.9e-17  Score=119.66  Aligned_cols=117  Identities=20%  Similarity=0.319  Sum_probs=89.1

Q ss_pred             ceEEEecCCCEEEEeEeCCCCC-----ceEEEEE-CCccCCCC------------CCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPV-----KTISWMK-DGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~-----~~~~W~~-~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      ....+.+|+++.|.|.+.+.|.     +.+.|++ ++......            ....|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   89 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG   89 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence            3457889999999999998876     8999999 44332211            2367999999999999999999998


Q ss_pred             CCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         204 QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       204 ~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      .+.....+.|.|......|.+..    ..+.+|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus        90 ~~~~~~~~~l~V~~~~~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           90 AAWDYKYLTVKVKASYMRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             TEEEEEEEEEEEEBCCCCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             CCcceEEEEEEecCCCCcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence            87666677777764333343332    23467999999999999999999999988654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.74  E-value=1.5e-17  Score=126.33  Aligned_cols=158  Identities=19%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4678999999999999863       89999643322110             01123455432      3589999999


Q ss_pred             cCCCeeEEEEEEcCCCc---------c----EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCce
Q psy3045          77 VEDSGKYLCVVNNSVGG---------E----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV  143 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~---------~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  143 (267)
                      .+|+|.|+|.+.+..+.         .    ...+.|.|.....  ..|.                      .....+ .
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~--~~P~----------------------v~~~~p-~  142 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST--KGPS----------------------VFPLAP-S  142 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC--BCCE----------------------ECCCCC--
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC--cCCc----------------------EEEecC-c
Confidence            99999999999987541         1    1224555553110  0010                      000111 1


Q ss_pred             EEEecCCCEEEEeEeCCC-CCc-eEEEEECCccCCC--------CCC-----CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PVK-TISWMKDGKPVPD--------HNE-----PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~~~~--------~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..+..|+.++|.|.+.+. |.+ .+.|++++..+..        .++     +.|.|.....++ |.|+|.|.|....
T Consensus       143 ~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          143 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             ----------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             ccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            134568999999999886 766 9999999876421        111     235666666667 9999999997543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.74  E-value=3.8e-19  Score=132.05  Aligned_cols=169  Identities=17%  Similarity=0.228  Sum_probs=98.7

Q ss_pred             cCCCcccCCCCceeEE--ecCCCeEEEEEEecc---------eeeeecccCcceec---cccCCceEEEEeeEEEEeecc
Q psy3045          11 FKAPTFSSVSDIIRFK--KPGGESFALLCEAQE---------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAK   76 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~--v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~   76 (267)
                      ..+|.+...+  ....  +.+|++++|.|.+.+         +.|++++.......   ..............|.|.+++
T Consensus         7 ~~~p~v~~~p--p~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   84 (218)
T 2rgs_A            7 EGGPSVFIFP--PNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQD   84 (218)
T ss_dssp             --CCEEEEEC--CCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred             CCCCEEEEEC--cCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHH
Confidence            3456666655  3434  889999999999752         89999642211100   001111122234679999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.|..+.......+  .........+....                      ..... ....|+.+.|.|
T Consensus        85 ~~D~g~Y~C~~~~~~~~~~~~~~v--~~~~~~~~~P~v~~----------------------~~~~~-~~~~g~~~~L~C  139 (218)
T 2rgs_A           85 WMSGKEFKCKVNNKDLPSPIERTI--SKIKGLVRAPQVYI----------------------LPPPA-EQLSRKDVSLTC  139 (218)
T ss_dssp             HHTTCCEEEEEEETTCSSCEEEEE--CCCCCCCBCCEEEE----------------------ECCCG-GGTTSSEEEEEE
T ss_pred             cCCCCeEEEEEECCcCCCcceEEE--eecCCCCCCCEEEE----------------------ECCCh-HHhcCCceEEEE
Confidence            999999999999886643111111  11001111111110                      00000 112489999999


Q ss_pred             EeCC-CCCc-eEEEEECCccCCCC--------CCCe------EEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         157 KYEG-NPVK-TISWMKDGKPVPDH--------NEPV------FRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       157 ~~~~-~p~~-~~~W~~~~~~~~~~--------~~~~------l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.| .|.+ .+.|+++|..+...        ....      |.+.....+|.|.|+|.|.|....
T Consensus       140 ~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          140 LVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            9998 4655 99999999876421        1222      333333344689999999998754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.73  E-value=6.8e-17  Score=118.83  Aligned_cols=119  Identities=13%  Similarity=0.256  Sum_probs=92.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------------------------CCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------------------------~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .+.+|+.+.|.|...+.+.+.+.|++++.....                         ..+..|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~   89 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (208)
T ss_dssp             EEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             eeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEE
Confidence            788899999999988888889999987542210                         1235799999999999999999


Q ss_pred             EEcCC-CCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045         200 IRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE  266 (267)
Q Consensus       200 ~~~~~-~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~  266 (267)
                      +.+.. +.......+.|......|.+......  +.+|+.+.|.|.+.+.| |.+.|+++|..+..+.
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~  154 (208)
T 3r4d_A           90 MTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE  154 (208)
T ss_dssp             EECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCS
T ss_pred             EEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCC
Confidence            99985 44455666777654445666665544  78899999999999866 7999999999987543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=3.2e-17  Score=120.89  Aligned_cols=125  Identities=17%  Similarity=0.321  Sum_probs=91.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC--------------CC-------CCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~--------------~~-------~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++  ..+              ..       .....|.|.+++.+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            45568899999999999999888899999843  221              00       11237999999999999999


Q ss_pred             EEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcCCC
Q psy3045         198 CVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       198 C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~~~  265 (267)
                      |.+.+..+.... ...+.|.....+|.+...+....+.+|+.+.|.|.+.|. |++ .|.|+++|+.+..+
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~  157 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDG  157 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTT
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCC
Confidence            999987653222 335666543346776664433334579999999999974 444 89999999988654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.73  E-value=2.2e-17  Score=122.23  Aligned_cols=160  Identities=16%  Similarity=0.251  Sum_probs=100.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ..+.+.+|++++|.|.+.+       +.|+++..+.....            ......|+...      +.+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            5678999999999999874       99999643321110            01123455432      34899999999


Q ss_pred             CCCeeEEEEEEcCCCc---cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          78 EDSGKYLCVVNNSVGG---ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      +|+|.|+|.+.+..+.   ....+.|.|....  ...|...                      ...+ ...+..|+.+.|
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~----------------------~~~~-~~~~~~g~~v~L  142 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ--TTAPSVY----------------------PLAP-GCGDTTSSTVTL  142 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSSC--CBCCCEE----------------------EECC-CSSCCCCSSEEE
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCCC--CCCCeEE----------------------eccC-ChhhccCCcEEE
Confidence            9999999999876421   1223566665311  0111111                      0001 112456999999


Q ss_pred             EeEeCCC-CCc-eEEEEECCccCCCCC------CCeEE----eccCCCCCCeEEEEEEEcCCCCce
Q psy3045         155 TCKYEGN-PVK-TISWMKDGKPVPDHN------EPVFR----IDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       155 ~C~~~~~-p~~-~~~W~~~~~~~~~~~------~~~l~----i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .|.+.+. |.+ .+.|++++..+....      ...+.    +.....++ |.|+|.|.|..+...
T Consensus       143 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~  207 (215)
T 1c5d_H          143 GCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTK  207 (215)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEE
T ss_pred             EEEEeeeEcCCcEEEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCcc
Confidence            9999986 777 999999987643110      11211    23333355 999999999876544

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.72  E-value=7.9e-17  Score=122.21  Aligned_cols=170  Identities=21%  Similarity=0.334  Sum_probs=104.9

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceecc-----------ccCCceEEEE-----eeEEEEee
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA-----------VPLNDRVKQV-----SGTLIIKE   74 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~-----------~~~~~~~~~~-----~~~l~i~~   74 (267)
                      .+...+  ..+.+.+|++++|.|.+..    +.|++...+......           .....|+...     +.+|.|.+
T Consensus         5 ~v~q~p--~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            5 GITQSP--KYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             CEECSC--SEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             cceEcC--CeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            444444  6889999999999999865    999996433211100           0123455442     35899999


Q ss_pred             cccCCCeeEEEEEEcCCC---ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC
Q psy3045          75 AKVEDSGKYLCVVNNSVG---GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP  151 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~  151 (267)
                      ++.+|+|.|+|.+.+...   .......|.|.........|....                      ..+....+..|+.
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~----------------------~~~~~~~~~~g~~  140 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAV----------------------FEPSEAEISHTQK  140 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEE----------------------ECCCHHHHHHHSE
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEE----------------------ECCChhhhccCCc
Confidence            999999999999988521   111223566654221111221110                      0011112336899


Q ss_pred             EEEEeEeCCC-CC-ceEEEEECCccCCCC--------------CCC------eEEeccCCCC-CCeEEEEEEEcCCCCce
Q psy3045         152 AQFTCKYEGN-PV-KTISWMKDGKPVPDH--------------NEP------VFRIDSVRKE-DKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       152 v~l~C~~~~~-p~-~~~~W~~~~~~~~~~--------------~~~------~l~i~~~~~~-d~g~y~C~~~~~~~~~~  208 (267)
                      +.|.|.+.+. |. +.+.|+++|..+...              ...      .|.|...... +.|.|+|.+.|......
T Consensus       141 ~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          141 ATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             eEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            9999999885 64 599999998766421              111      2555554443 57899999999865443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.72  E-value=5.6e-17  Score=119.80  Aligned_cols=124  Identities=15%  Similarity=0.288  Sum_probs=92.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cC--------------C-------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PV--------------P-------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~--------------~-------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++.  ..              .       ......|.|.+++.+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            445588899999999999999889999998431  11              0       012347999999999999999


Q ss_pred             EEEEcCCCC-ceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         198 CVIRNEQES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       198 C~~~~~~~~-~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      |.+.+..+. ......+.|.....+|.+...+....+..|+.+.|.|.+.|.+++  .+.|+++|+.+..
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  157 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRD  157 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCC
Confidence            999886532 222345666444467777776655556678889999999986653  8999999998865

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.71  E-value=4.2e-18  Score=133.97  Aligned_cols=157  Identities=15%  Similarity=0.220  Sum_probs=99.7

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceecc-----ccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVA-----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ....+.+|+++.|.|.+.+         +.|++++. ......     .....++ ...+.|.|.++..+|+|.|+|.+.
T Consensus       121 ~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g-~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~G~Y~C~a~  198 (323)
T 2wqr_A          121 SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG-KPVNHSTRKEEKQRNGTL-TVTSTLPVGTRDWIEGETYQCRVT  198 (323)
T ss_dssp             CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTC-CCCCCCCCEEEECTTSCE-EEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCC-cccccccCCCccCCCCCE-EEEEEEEECHHHccCCCCEEEEEE
Confidence            4456889999999999754         67999632 111110     0112222 245689999999999999999999


Q ss_pred             cCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC-ceE
Q psy3045          89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTI  166 (267)
Q Consensus        89 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~  166 (267)
                      |..+....  .+.|.........+.....                      .+.. ....|+.+.|.|.+.+. |. ..+
T Consensus       199 n~~~~~~~--~~~v~~~~~~~~~P~v~~~----------------------~~~~-~~~~g~~~~l~C~~~g~~p~~~~v  253 (323)
T 2wqr_A          199 HPHLPRAL--MRSTTKTSGPRAAPEVYAF----------------------ATPE-WPGSRDKRTLACLIQNFMPEDISV  253 (323)
T ss_dssp             CTTSSSCE--EEEECCCCSCCBCCEEEEE----------------------ECCC-CTTCTTEEEEEEEEEEEBSSCCEE
T ss_pred             CCCCCCCe--eeEEEccCCCCCCCEEEEe----------------------CCCh-HHhcCCcEEEEEEeeeeeCCCcEE
Confidence            87644322  2333211001111111100                      0000 11238999999999884 43 389


Q ss_pred             EEEECCccCCCC-----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         167 SWMKDGKPVPDH-----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       167 ~W~~~~~~~~~~-----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .|+++|..+...           +     .+.|.|..+..+|.|.|+|.|.|....
T Consensus       254 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          254 QWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            999999887532           1     135788888888999999999998765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=7.4e-17  Score=120.66  Aligned_cols=162  Identities=17%  Similarity=0.293  Sum_probs=101.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc------------ccCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA------------VPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~------------~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ..+.+.+|++++|.|.+.+       +.|++...+......            .....|+...      ..+|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (230)
T 1ypz_F            9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (230)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCCh
Confidence            6789999999999999864       899986433211100            0134565543      24899999999


Q ss_pred             CCCeeEEEEEEcC--CCc--cEEEEEEEEEeccc-c--ccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCC
Q psy3045          78 EDSGKYLCVVNNS--VGG--ESVETVLTVTAPLA-A--GVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGR  150 (267)
Q Consensus        78 ~d~G~Y~C~~~~~--~~~--~~~~~~l~V~~~~~-~--~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~  150 (267)
                      +|+|.|.|.+.+.  ...  ....+.|.|..... .  ...+..                      ....+....+..|+
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~----------------------~v~~p~~~~v~~g~  146 (230)
T 1ypz_F           89 EDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKP----------------------TIFLPSVAETNLHK  146 (230)
T ss_dssp             GGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCC----------------------CEECCCHHHHHHHS
T ss_pred             hhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCc----------------------eEECCCchhhccCC
Confidence            9999999999874  111  11234566652110 0  000000                      00011111345689


Q ss_pred             CEEEEeEeCCC-CC-ceEEEEE-CCccCCCC--------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         151 PAQFTCKYEGN-PV-KTISWMK-DGKPVPDH--------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       151 ~v~l~C~~~~~-p~-~~~~W~~-~~~~~~~~--------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .++|.|.+.+. |. +.+.|++ +|..+...        +     .+.|.|..... + |.|+|.|.|......
T Consensus       147 ~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          147 TGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG  218 (230)
T ss_dssp             CEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT
T ss_pred             cceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc
Confidence            99999999876 64 6999999 88766432        1     13467766664 4 999999999876543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.71  E-value=1.1e-16  Score=113.90  Aligned_cols=117  Identities=18%  Similarity=0.342  Sum_probs=89.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCC-CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR  218 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  218 (267)
                      .+....+.+|+.+.|.|.+.+.| .+.+.|++++..+... ...+.+.+++.+|+|.|+|.+.+.....  ...+.+.  
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-~~~~~~~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~--   84 (170)
T 3ry4_A           10 EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-TQPSYRFKANNNDSGEYTCQTGQTSLSD--PVHLTVL--   84 (170)
T ss_dssp             ESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-CSSEEEEECCGGGCEEEEEEETTSBCCC--CEEEEEE--
T ss_pred             CCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-ccceEEEecccccCeEEEEEEeCCCceE--eEEEEEE--
Confidence            34444788999999999999886 6799999999988654 4556778899999999999999754433  4455554  


Q ss_pred             cCCCeeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEcC
Q psy3045         219 FDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  263 (267)
Q Consensus       219 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l~  263 (267)
                       .++.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.
T Consensus        85 -~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (170)
T 3ry4_A           85 -FEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK  128 (170)
T ss_dssp             -CCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred             -CCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence             234433333 44678999999999995 56668999999998764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.71  E-value=4.3e-17  Score=122.61  Aligned_cols=162  Identities=22%  Similarity=0.336  Sum_probs=99.9

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecc-----------ccCCceEEE-----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA-----------VPLNDRVKQ-----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~-----------~~~~~~~~~-----~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|.+..    +.|+++..+......           ..+..|+..     .+.+|.|.+++.+|+|.
T Consensus         7 ~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   86 (238)
T 1bec_A            7 RNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV   86 (238)
T ss_dssp             SEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred             CeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence            6789999999999999865    999996433211100           012344433     23589999999999999


Q ss_pred             EEEEEEcCCC---c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          83 YLCVVNNSVG---G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        83 Y~C~~~~~~~---~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      |+|.+.+..+   .  ......|.|.........+....                      ..+....+..|+.+.|.|.
T Consensus        87 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~----------------------~~~~~~~~~~g~~~~L~C~  144 (238)
T 1bec_A           87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSL----------------------FEPSKAEIANKQKATLVCL  144 (238)
T ss_dssp             EEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEE----------------------ECCCSTTCSSSCSCSEEEE
T ss_pred             EEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEE----------------------ECCChHHcccCCceEEEEE
Confidence            9999998642   1  11234566664321111221110                      0111113456999999999


Q ss_pred             eCCC-CC-ceEEEEECCccCCCCC----------CCeE------EeccCCCCC-CeEEEEEEEcCCCC
Q psy3045         158 YEGN-PV-KTISWMKDGKPVPDHN----------EPVF------RIDSVRKED-KGMYQCVIRNEQES  206 (267)
Q Consensus       158 ~~~~-p~-~~~~W~~~~~~~~~~~----------~~~l------~i~~~~~~d-~g~y~C~~~~~~~~  206 (267)
                      +.+. |. +.+.|+++|..+....          ...+      .|......| .|.|+|.|.|....
T Consensus       145 ~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          145 ARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             EEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             EeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            9986 64 4999999998764321          1222      222222223 67899999997543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.71  E-value=2.4e-16  Score=114.77  Aligned_cols=114  Identities=19%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             EEEecCCCEEEEeEeCCCCCc--eEEEEECCccCCC----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVK--TISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~--~~~W~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      ..+..|+++.|.|.+ +.|.|  .|.|++.+..+..    .....|.|.+++.+|+|.|.|.+.+..+....+..|.|. 
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~-   94 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY-   94 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEE-
Confidence            478899999999999 88777  9999987655521    234679999999999999999999988776667777776 


Q ss_pred             ccCCCee-ecCCceeEEecCCcEEEEEEeecC-CC----CcEEEEECCEEcCC
Q psy3045         218 RFDPPVI-KESFSDETLNPGPNYYFKCIASGN-PT----PEISWYLDGKKLVN  264 (267)
Q Consensus       218 ~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~i~W~~~~~~l~~  264 (267)
                        .+|.. ...+.  .+.+|+.+ |.|.+.|. |.    +.|.|||||+.|..
T Consensus        95 --~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~  142 (210)
T 1gsm_A           95 --AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEG  142 (210)
T ss_dssp             --BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             --ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccc
Confidence              44433 22332  56778888 99999985 64    38999999999853

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.70  E-value=7.8e-17  Score=117.94  Aligned_cols=116  Identities=27%  Similarity=0.426  Sum_probs=87.8

Q ss_pred             EEecCCCEEEEeEeCC----CCCceEEEEECCccCC--------------------CCCCCeEEeccCCCCCCeEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEG----NPVKTISWMKDGKPVP--------------------DHNEPVFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~----~p~~~~~W~~~~~~~~--------------------~~~~~~l~i~~~~~~d~g~y~C~~  200 (267)
                      .+..|+++.|.|.+.+    .|.+.+.|++++..+.                    ......|.|.+++.+|+|.|+|.+
T Consensus         5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   84 (201)
T 1dr9_A            5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVV   84 (201)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEE
T ss_pred             EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEE
Confidence            6788999999999853    3567999999887651                    123578999999999999999999


Q ss_pred             EcCCCCce-----EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEcCC
Q psy3045         201 RNEQESAQ-----ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       201 ~~~~~~~~-----~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l~~  264 (267)
                      .+..+...     ..+.|.|......|.+...    ....|+.+.|.|.+. |.|.|.|.|+++|+.+..
T Consensus        85 ~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~  150 (201)
T 1dr9_A           85 LKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNA  150 (201)
T ss_dssp             EECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             EcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECcc
Confidence            99765543     3555666543333444331    123588899999995 999999999999988764

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.70  E-value=4.5e-18  Score=127.35  Aligned_cols=169  Identities=12%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             ccCCCcccC-CCCceeEEecCCCeEEEEEEecc--------eeeeecccCc-ceecc---ccCCceEEEEeeEEEEeecc
Q psy3045          10 GFKAPTFSS-VSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGS-SRKVA---VPLNDRVKQVSGTLIIKEAK   76 (267)
Q Consensus        10 ~~~~P~~~~-~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~-~~~~~---~~~~~~~~~~~~~l~i~~~~   76 (267)
                      ...+|.+.. .|  ....+.+|++++|.|.+.+        +.|++++... .....   ...+..+ .....|.|.++.
T Consensus         9 ~~~~P~v~~~~p--~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~-~~~s~L~I~~~~   85 (231)
T 2w59_A            9 SCSPIQLYAIPP--SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTY-SASSAVPVSTQD   85 (231)
T ss_dssp             ---CCEEEEECC--CHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCE-EEEEEEECCHHH
T ss_pred             CCCCCEEEEeCc--ChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcE-EEEEEEEecchh
Confidence            344676553 33  5567889999999999753        7899864432 11000   0111222 245679999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC  156 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  156 (267)
                      .+|+|.|+|.+.+..+....  .+.|.........+....                      ..+.... ..++.+.|.|
T Consensus        86 ~~D~g~Y~C~~~~~~~~~~~--~~~v~~~~~~~~~P~v~v----------------------~~~~~~~-~~~~~~~L~C  140 (231)
T 2w59_A           86 WLSGERFTCTVQHEELPLPL--SKSVYRNTGPTTPPLIYP----------------------FAPHPEE-LSLSRVTLSC  140 (231)
T ss_dssp             HHTTCCEEEEEECTTCSSCE--EEEECCCCSCCBCCEEEE----------------------ECCCGGG-GGSSEEEEEE
T ss_pred             ccCCCEEEEEEEcCCCCCce--EEEEecCCCCCcCCEEEE----------------------eCCCHHH-hccCceEEEE
Confidence            99999999999987754332  233322110001111110                      0000001 1245699999


Q ss_pred             EeCCC-C-CceEEEEECCccCCCC-------------------C-C-----CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         157 KYEGN-P-VKTISWMKDGKPVPDH-------------------N-E-----PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       157 ~~~~~-p-~~~~~W~~~~~~~~~~-------------------~-~-----~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.++ | .+.+.|++||..+...                   + .     +.|.|.....+|.|.|+|.|.|....
T Consensus       141 ~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          141 LVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             EEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            99986 4 4799999999876421                   1 1     23556666667799999999998754

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.70  E-value=2.3e-16  Score=113.77  Aligned_cols=105  Identities=25%  Similarity=0.563  Sum_probs=84.8

Q ss_pred             EEecCCCEEEEeEeCCCCCc--eEEEEECCccCCCCC----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc
Q psy3045         145 TIDFGRPAQFTCKYEGNPVK--TISWMKDGKPVPDHN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR  218 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  218 (267)
                      .+.+|+.+.|.|.+.+.+.+  .+.|++++..+....    ...|.+.  ..+|+|.|+|.+.|.   ......+.|.  
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~--   81 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLH--   81 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEEC--
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEe--
Confidence            67889999999999887766  999999998875432    2345555  688999999999983   2345566665  


Q ss_pred             cCCCeeecCCceeEEecCCcEEEEEEeecCC-CCcEEEEE
Q psy3045         219 FDPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYL  257 (267)
Q Consensus       219 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~  257 (267)
                       .+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++
T Consensus        82 -~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~  120 (184)
T 3b5h_A           82 -GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYK  120 (184)
T ss_dssp             -CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEE
T ss_pred             -cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEE
Confidence             577777777777889999999999999999 78999999

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.70  E-value=2.2e-16  Score=119.73  Aligned_cols=117  Identities=12%  Similarity=0.219  Sum_probs=91.1

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCC----------CCCCCeEEeccCCCCCCeEEEEEEEcCCC-----Cce
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE-----SAQ  208 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-----~~~  208 (267)
                      ..+.+|++++|.|.+.+ +.+.+.|+|++..+.          ......|.|.+++.+|+|.|+|.+.+...     ...
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S   94 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS   94 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence            36889999999999874 467899999987652          12346799999999999999999986431     223


Q ss_pred             EEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         209 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       209 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      ..+.|.|...+.+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.
T Consensus        95 ~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  147 (257)
T 1b6u_A           95 DPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHE  147 (257)
T ss_dssp             CCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCE
T ss_pred             CCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccC
Confidence            456677766556788877665 367899999999999875 47999999997654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.70  E-value=1e-16  Score=118.83  Aligned_cols=122  Identities=17%  Similarity=0.397  Sum_probs=88.7

Q ss_pred             eEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccC--------------C-----------CCCCCeEEeccCCCCCCe
Q psy3045         143 VQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPV--------------P-----------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~--------------~-----------~~~~~~l~i~~~~~~d~g  194 (267)
                      ...+.+|+++.|.|.+.+. |.+.+.|+++.  ...              .           ......|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            5588899999999999988 88999999832  110              0           012345999999999999


Q ss_pred             EEEEEEEcCCC-----CceEEEEEEEeccc-CCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCC
Q psy3045         195 MYQCVIRNEQE-----SAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       195 ~y~C~~~~~~~-----~~~~~~~l~v~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~  264 (267)
                      .|.|.+.+..+     .......|.|.... .+|.+...+.......|+.+.|.|.+.| .|++ .+.|+++|+.+..
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcC
Confidence            99999998765     22223456665322 4566665444444556889999999998 5666 8999999998865

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.70  E-value=2.6e-16  Score=114.46  Aligned_cols=122  Identities=13%  Similarity=0.285  Sum_probs=88.3

Q ss_pred             CceEEEecCCCEEEEeEeCC-CCCceEEEEECCccCC----C--------------------CCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVP----D--------------------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~----~--------------------~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|+++.|.|.+.+ .+.+.+.|++++..+.    .                    ..+..|.|.+++.+|+|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            34457889999999999875 3557999999865321    0                    124679999999999999


Q ss_pred             EEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC-cEEEEEEeecC-CCCcEEEEECCEEcCC
Q psy3045         196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASGN-PTPEISWYLDGKKLVN  264 (267)
Q Consensus       196 y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~l~~  264 (267)
                      |.|.+.+..+.....+.|.|......|.+....  .....|. .+.|.|.+.|. |.|.|.|+++|+.+..
T Consensus        85 Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~  153 (193)
T 2if7_A           85 YRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS  153 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES
T ss_pred             EEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC
Confidence            999999988766666677775432234444433  1233455 79999999985 4789999999987643

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=122.36  Aligned_cols=154  Identities=20%  Similarity=0.340  Sum_probs=85.8

Q ss_pred             cccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          75 AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      ..+.|.+.|.|.+.+..|.......+.|...                                   +....+.+|++++|
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~-----------------------------------p~~v~v~~G~~v~L   47 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQT-----------------------------------PRYLVKGQGQKAKM   47 (270)
T ss_dssp             -------------------------CCCEEE-----------------------------------CSEEEEETTSCEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEeC-----------------------------------CCeEEEcCCCCEEE
Confidence            3577899999999887665433333333221                                   22337888999999


Q ss_pred             EeEeCCCCCceEEEEECC--cc------------------------C--CCCCCCeEEeccCCCCCCeEEEEEEEcCCC-
Q psy3045         155 TCKYEGNPVKTISWMKDG--KP------------------------V--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQE-  205 (267)
Q Consensus       155 ~C~~~~~p~~~~~W~~~~--~~------------------------~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-  205 (267)
                      .|.+.+ +.+.+.|+|..  ..                        +  .......|.|.+++.+|+|.|.|.+.+... 
T Consensus        48 ~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~  126 (270)
T 3qib_D           48 RCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQ  126 (270)
T ss_dssp             EEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTC
T ss_pred             EEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCc
Confidence            999865 66799999822  10                        0  012346899999999999999999986421 


Q ss_pred             ---CceEEEEEEEec---ccCCCeeec-CCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCC
Q psy3045         206 ---SAQASGELKLGG---RFDPPVIKE-SFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       206 ---~~~~~~~l~v~~---~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~  264 (267)
                         .......+.|..   ...+|.+.. .+....+..|+.+.|.|.+.| .|.+ .+.|+++|+.+..
T Consensus       127 ~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          127 DTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             CCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             cceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence               111233455543   122455443 233334556999999999998 6666 8999999998864

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.70  E-value=1.1e-16  Score=118.05  Aligned_cols=120  Identities=14%  Similarity=0.235  Sum_probs=89.5

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      ...+.+|+.+.|.|.+.  +.+.+.|+++  +..+.                     ......|.|.+++.+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            55888999999999988  8889999994  22211                     01234699999999999999999


Q ss_pred             EEcCCC--CceEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEECCEEcCC
Q psy3045         200 IRNEQE--SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLDGKKLVN  264 (267)
Q Consensus       200 ~~~~~~--~~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~l~~  264 (267)
                      +.+..+  .......+.|... ..+|.+...+....+.+|+.+.|.|.+.|.+  .+.+.|+++|+.+..
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            999876  2333455666522 2467776655444455799999999999864  468999999998854

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.69  E-value=3.8e-16  Score=132.36  Aligned_cols=156  Identities=21%  Similarity=0.367  Sum_probs=107.1

Q ss_pred             eeEEecCCCeEEEEEEe-cc-----eeeeecccCcceecc------ccCCceEE-EEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVA------VPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~------~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ....+.+|++++|.|.+ .+     +.|++++........      ..+..|.. ..+++|.|.+++.+|+|.|+|.+.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            56889999999999999 44     999997431111000      01122222 2345899999999999999999999


Q ss_pred             CCCcc-EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCC-EEEEeEeCC-CCCceE
Q psy3045          90 SVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRP-AQFTCKYEG-NPVKTI  166 (267)
Q Consensus        90 ~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~-v~l~C~~~~-~p~~~~  166 (267)
                      ..+.. ...+.|.|...+..   +...                         .....+..|+. +.|.|.+.+ .|.+.+
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~---p~i~-------------------------~~~~~~~~~~~~~~l~C~~~~~~P~~~i  505 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGK---PEIV-------------------------DSASELTAGVPNKVGTCVSEGSYPAGTL  505 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCC---CEEE-------------------------SCCSEECTTSCEEEEEEEEEEEBSCCEE
T ss_pred             CCCceeEEEEEEEEEcCCCC---CEEE-------------------------cCCcccccCCceeEEEEECCCCCCCCeE
Confidence            88876 77788888764431   1111                         00113445555 466999988 589999


Q ss_pred             EEEECCccCCCCCC--------------------CeEEeccCC-CCCCeEEEEEEEcCCCC
Q psy3045         167 SWMKDGKPVPDHNE--------------------PVFRIDSVR-KEDKGMYQCVIRNEQES  206 (267)
Q Consensus       167 ~W~~~~~~~~~~~~--------------------~~l~i~~~~-~~d~g~y~C~~~~~~~~  206 (267)
                      .|++|+..+.....                    +.|.|..+. .++.|.|+|.|+|....
T Consensus       506 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          506 SWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            99999988753211                    357788777 44478999999998643

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.69  E-value=3.9e-17  Score=122.33  Aligned_cols=166  Identities=16%  Similarity=0.233  Sum_probs=99.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------e--eeeecccCcceec---------------cccCCceEEEE------eeEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-------N--MWFKFIEGSSRKV---------------AVPLNDRVKQV------SGTLII   72 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~--~W~~~~~~~~~~~---------------~~~~~~~~~~~------~~~l~i   72 (267)
                      ..+.+.+|++|+|.|.+.+       +  .|++...+.....               ......|+...      ..+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            4568999999999999864       5  9998533221110               01123455432      236999


Q ss_pred             eecccCCCeeEEEEEEcCCC--------ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceE
Q psy3045          73 KEAKVEDSGKYLCVVNNSVG--------GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ  144 (267)
Q Consensus        73 ~~~~~~d~G~Y~C~~~~~~~--------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  144 (267)
                      .+++.+|+|.|.|.+.+..+        .......|.|....  ...+...                       ......
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~-----------------------~~~~~~  142 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS--TKGPSVF-----------------------PLAPSS  142 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC--CBCCEEE-----------------------EECC--
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC--CCCCEEE-----------------------Eecccc
Confidence            99999999999999986521        11222345554211  1111111                       001111


Q ss_pred             EEecCCCEEEEeEeCCC-C-CceEEEEECCccCC--------CCCC-----CeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         145 TIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVP--------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~--------~~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+..|+.++|.|.+.+. | ...+.|++++..+.        ..+.     +.|.|......| |.|+|.|.|..+....
T Consensus       143 ~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~  221 (232)
T 3qhz_H          143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  221 (232)
T ss_dssp             -----CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEE
T ss_pred             cccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccE
Confidence            44569999999999875 3 34788999886432        1111     357788777788 9999999998766554


Q ss_pred             EEEEE
Q psy3045         210 SGELK  214 (267)
Q Consensus       210 ~~~l~  214 (267)
                      ...+.
T Consensus       222 ~~~l~  226 (232)
T 3qhz_H          222 DKRVE  226 (232)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            44443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.69  E-value=1.3e-16  Score=117.83  Aligned_cols=124  Identities=15%  Similarity=0.327  Sum_probs=88.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCC---CceEEEEECC--ccC--------------CC-------CCCCeEEeccCCCCCCe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~--~~~--------------~~-------~~~~~l~i~~~~~~d~g  194 (267)
                      +....+.+|+++.|.|.+.+.|   .+.+.|++++  ..+              ..       .....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            4455889999999999999877   4789999863  221              00       12247999999999999


Q ss_pred             EEEEEEEcCCCCc-eEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         195 MYQCVIRNEQESA-QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       195 ~y~C~~~~~~~~~-~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      .|.|.+.+..+.. .....+.|... ..+|.+...+.......|+.+.|.|.+.|.+++  .|.|+++|+.+..
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            9999999876432 12334555322 246776654443344578999999999986543  8999999998864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.69  E-value=1.7e-16  Score=119.13  Aligned_cols=124  Identities=13%  Similarity=0.277  Sum_probs=91.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++.  ...                     ......|.|.+++.+|+|.|.
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY  110 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence            445588899999999999988888999998431  110                     012356999999999999999


Q ss_pred             EEEEcCCCCc-eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecC-C-CCcEEEEECCEEcCC
Q psy3045         198 CVIRNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISWYLDGKKLVN  264 (267)
Q Consensus       198 C~~~~~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~l~~  264 (267)
                      |.+.+..+.. .....+.|.....+|.+...+....+.+|+.+.|.|.+.+. | .+.+.|+++|..+..
T Consensus       111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  180 (237)
T ss_dssp             EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence            9998865421 22345566544567777665544445568899999999984 4 479999999998864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.68  E-value=3.6e-16  Score=115.75  Aligned_cols=125  Identities=13%  Similarity=0.236  Sum_probs=87.7

Q ss_pred             CceEEEecCCCEEEEeEe-CCCC-CceEEEEECCc--cCC----------C-----------CCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKY-EGNP-VKTISWMKDGK--PVP----------D-----------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~-~~~p-~~~~~W~~~~~--~~~----------~-----------~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|+++.|.|.+ .+.+ .+.+.|++++.  .+.          .           .....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            445688999999999995 4443 57999999542  210          0           112379999999999999


Q ss_pred             EEEEEEcCCCC--ceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCCC
Q psy3045         196 YQCVIRNEQES--AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       196 y~C~~~~~~~~--~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~~  265 (267)
                      |.|.+.+..+.  ......+.|.....+|.+...+.......|+.+.|.|.+.| .|++ .|.|+++|+.+..+
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCC
Confidence            99999997651  12234556654335677665333223346889999999998 4554 89999999988654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=2.8e-16  Score=115.54  Aligned_cols=151  Identities=23%  Similarity=0.309  Sum_probs=96.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccc------cCCceEEEE-------eeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAV------PLNDRVKQV-------SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~------~~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++++|.|.+.+    +.|++...+.......      ....|+...       ..+|.|.+++.+|+|.|+|
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (207)
T 1ypz_E            9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC   88 (207)
T ss_dssp             SEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            6789999999999999987    9999964332111110      123444432       2489999999999999999


Q ss_pred             EEEcCCC---------c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEE
Q psy3045          86 VVNNSVG---------G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQF  154 (267)
Q Consensus        86 ~~~~~~~---------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l  154 (267)
                      .+.+..+         .  ....+.|.|.........|..                              .+..+ .+.|
T Consensus        89 ~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v------------------------------~~~~~-~~~l  137 (207)
T 1ypz_E           89 AADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSV------------------------------FIMKN-GTNV  137 (207)
T ss_dssp             EEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEE------------------------------EEEEE-TTEE
T ss_pred             EEecCCcccccccccceeeecCccEEEEccCCCCCCCCeE------------------------------EEeCC-CCeE
Confidence            9987642         1  112356666643221112211                              11112 3799


Q ss_pred             EeEeCCC-CC-ceEEEEECCccCCCC-------CCCeEEeccCCC-CCCeEEEEEEEcCCC
Q psy3045         155 TCKYEGN-PV-KTISWMKDGKPVPDH-------NEPVFRIDSVRK-EDKGMYQCVIRNEQE  205 (267)
Q Consensus       155 ~C~~~~~-p~-~~~~W~~~~~~~~~~-------~~~~l~i~~~~~-~d~g~y~C~~~~~~~  205 (267)
                      .|.+.+. |. +.+.|+++ ..+...       ....+.+..... ++.|.|+|.+.|..+
T Consensus       138 ~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          138 ACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             EEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             EEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            9999875 54 79999998 655321       224444444443 678999999999764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.68  E-value=3.1e-16  Score=118.56  Aligned_cols=118  Identities=17%  Similarity=0.311  Sum_probs=85.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCce-----EEEEECCccCC---------------------------CCCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKT-----ISWMKDGKPVP---------------------------DHNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~-----~~W~~~~~~~~---------------------------~~~~~~l~i~~~  188 (267)
                      +....+..|+++.|.|.+.+.|.+.     +.|++++....                           ......|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3445788999999999998877654     99999643321                           012345999999


Q ss_pred             CCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEc
Q psy3045         189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKL  262 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l  262 (267)
                      +.+|+|.|+|.+.+..+.......|.|.   .+|.+...+.. ....|+.+.|.|.+.| .|.| .|.|+++|+.+
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~---~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVV---ASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE---BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEe---cCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            9999999999999987766666777776   46776665543 3456788889999998 7888 99999999643

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.68  E-value=7e-18  Score=126.82  Aligned_cols=156  Identities=17%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             ecCCCeEEEEEEecc---------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          27 KPGGESFALLCEAQE---------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        27 v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      +.+|++++|.|.+.+         +.|++++.......   ..............|.|.++..+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            789999999999752         89999642211100   001111222345689999999999999999999987754


Q ss_pred             EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC-ceEEEEECC
Q psy3045          95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTISWMKDG  172 (267)
Q Consensus        95 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~  172 (267)
                      .....+.  ........+....                      ..... ....|+.+.|.|.+.|. |. ..+.|++||
T Consensus       109 ~~~~~v~--~~~~~~~~P~v~v----------------------~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  163 (239)
T 1i1c_A          109 PIEKSIS--KPEGTPRGPQVYT----------------------MAPPK-EEMTQSQVSITCMVKGFYPPDIYTEWKMNG  163 (239)
T ss_dssp             CEEEEEC--CCSSCCBCCEEEE----------------------ECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CcEEEEe--cCCCCCcCCEEEE----------------------ECCCh-HHhcCCcEEEEEEEeeeECCCeEEEEEECC
Confidence            2222221  1011111111110                      00000 11247889999999985 54 489999999


Q ss_pred             ccCCCC--------CCCe------EEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         173 KPVPDH--------NEPV------FRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       173 ~~~~~~--------~~~~------l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ..+...        ....      |.+.....++.|.|+|.|.|.....
T Consensus       164 ~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          164 QPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN  212 (239)
T ss_dssp             EECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence            877431        1122      3333333446899999999987543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=3.7e-16  Score=117.57  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCCeEEeccCCCCCCeEEEEEEEcCCCC--ceEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES--AQASGELK  214 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~  214 (267)
                      .+.+|++++|.|.+.+ +...+.|+|++..+.        ......|.|.+++.+|+|.|+|.+.+..+.  ....+.|.
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~   95 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   95 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence            6889999999999865 356899999987542        234568999999999999999999876432  23356666


Q ss_pred             EecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       215 v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      |...+.+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|+.+.
T Consensus        96 V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  142 (242)
T 1p6f_A           96 VTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSH  142 (242)
T ss_dssp             EECCSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCE
T ss_pred             eecccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccC
Confidence            765455777776553 468899999999998754 46999999997653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=4.6e-17  Score=129.29  Aligned_cols=117  Identities=16%  Similarity=0.332  Sum_probs=94.8

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCC-------CCCCCeEEeccCCCCCCe-EEEEEEEcCCCCceEEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------DHNEPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~-------~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l  213 (267)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.       ......|.|.++..+|+| .|+|.|.|..+.......+
T Consensus       166 ~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l  245 (347)
T 2ifg_A          166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV  245 (347)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECC
T ss_pred             CceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEE
Confidence            34478889999999999999999999999987643       224578999999999999 9999999998777666655


Q ss_pred             EEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045         214 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       214 ~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~  265 (267)
                      .|.   .+|.+    ......+|+.+.|.|.+.|.|.|.|.|+++|+.+..+
T Consensus       246 ~V~---~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~  290 (347)
T 2ifg_A          246 NVS---FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET  290 (347)
T ss_dssp             CCB---EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             EEc---CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCC
Confidence            554   35554    1123457999999999999999999999999998754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.67  E-value=1.7e-15  Score=112.50  Aligned_cols=119  Identities=17%  Similarity=0.354  Sum_probs=85.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-----CceEEEEECCccC---------C------------------CCCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDGKPV---------P------------------DHNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~~~~---------~------------------~~~~~~l~i~~~  188 (267)
                      +....+..|+++.|.|.+.+.|     ...+.|++++..+         .                  ......|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            3444788899999999987765     3489999964211         0                  001247999999


Q ss_pred             CCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEEC-CEEcC
Q psy3045         189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD-GKKLV  263 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~l~  263 (267)
                      +.+|+|.|+|.+.+ .+.......|.|......|...   ....+.+|+.+.|.|.+.|.|.|.+.|+++ |..+.
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence            99999999999999 5555556677776322222211   112567899999999999999999999998 65554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.67  E-value=3.4e-16  Score=115.43  Aligned_cols=115  Identities=20%  Similarity=0.359  Sum_probs=88.1

Q ss_pred             ceEEEecCCCEEEEeEeCCCC----CceEEEEEC----------------CccCCC-----------------CCCCeEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNP----VKTISWMKD----------------GKPVPD-----------------HNEPVFR  184 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~----------------~~~~~~-----------------~~~~~l~  184 (267)
                      ....+.+|+.+.|.|.+.+.+    .+.+.|+++                +..+..                 .....|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            344788999999999998876    469999983                322210                 1246799


Q ss_pred             eccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEECC
Q psy3045         185 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDG  259 (267)
Q Consensus       185 i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~  259 (267)
                      |.+++.+|+|.|+|.+.+..+.......|.|..   +|.+........+.+|+.+.|.|.+ .+.|.|.+.|++++
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~  160 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS  160 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC---CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEc---CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence            999999999999999999887777777777763   3443333333357789999999999 89999999999954

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.67  E-value=4.3e-16  Score=115.12  Aligned_cols=119  Identities=20%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             ceEEEecC--CCEEEEeEeCCCCCceEEEEEC---CccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-
Q psy3045         142 TVQTIDFG--RPAQFTCKYEGNPVKTISWMKD---GKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-  209 (267)
Q Consensus       142 ~~~~~~~g--~~v~l~C~~~~~p~~~~~W~~~---~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-  209 (267)
                      ....+.+|  +.+.|.|.+.+ |.+.+.|+++   +..+...      ....|.|.+++.+|+|.|+|.|.|..+.... 
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~   93 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI   93 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECC
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEE
Confidence            45588899  99999999976 7789999884   5554432      3467999999999999999999985443222 


Q ss_pred             EEEEEEecccCCCeeecCC-ceeEEecCCcEEEEEEeecCCC--CcEEEEECCEEc
Q psy3045         210 SGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKL  262 (267)
Q Consensus       210 ~~~l~v~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~l  262 (267)
                      .+.+.+.. ..+|.+...+ ....+.+|+.+.|.|.+.|.|.  +.+.|+++|+.+
T Consensus        94 ~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~  148 (213)
T 2x1w_L           94 MYIVVVVG-YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH  148 (213)
T ss_dssp             CEEEEECB-CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSC
T ss_pred             EEEEEEeC-CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCcc
Confidence            24555533 2344444444 3348899999999999998654  479999998764

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.67  E-value=2e-16  Score=117.42  Aligned_cols=120  Identities=18%  Similarity=0.384  Sum_probs=87.6

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC------------------C----------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP------------------D----------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~------------------~----------~~~~~l~i~~~~~  190 (267)
                      ...+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                  .          .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (219)
T 1c1e_H            9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN   88 (219)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            34788999999999998875  679999997  33221                  0          1125799999999


Q ss_pred             CCCeEEEEEEEcCCCCc----eEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEc
Q psy3045         191 EDKGMYQCVIRNEQESA----QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKL  262 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~~~----~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l  262 (267)
                      +|+|.|.|.+.+..+..    .....+.|... ..+|.+........+.+|+.+.|.|.+.| .|.| .|.|+++|..+
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H           89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             ccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence            99999999999876321    12345566531 23465554333335678999999999998 8988 99999999764

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.67  E-value=1.3e-16  Score=120.64  Aligned_cols=164  Identities=19%  Similarity=0.255  Sum_probs=98.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......             .....|+...      ..+|.|.+++
T Consensus         7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   86 (248)
T 3u2s_H            7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR   86 (248)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            5788999999999999853       999986433221111             1223455432      2369999999


Q ss_pred             cCCCeeEEEEEEcCCC----------------------ccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCC
Q psy3045          77 VEDSGKYLCVVNNSVG----------------------GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP  134 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~----------------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  134 (267)
                      .+|+|.|.|.+.+..+                      .....+.|.|...  ....+...                   
T Consensus        87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~--~~~~P~v~-------------------  145 (248)
T 3u2s_H           87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA--STKGPSVF-------------------  145 (248)
T ss_dssp             GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC--CCBCCEEE-------------------
T ss_pred             HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc--CCCCCEEE-------------------
Confidence            9999999999986311                      0111233344311  00111111                   


Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCC-C-CceEEEEECCccCC--------CCC-----CCeEEeccCCCCCCeEEEEE
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVP--------DHN-----EPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~--------~~~-----~~~l~i~~~~~~d~g~y~C~  199 (267)
                          ..+....+..|+.++|.|.+.+. | ...+.|++++..+.        ..+     .+.|.+.....++ |.|+|.
T Consensus       146 ----~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~  220 (248)
T 3u2s_H          146 ----PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICN  220 (248)
T ss_dssp             ----EECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEE
T ss_pred             ----EeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEE
Confidence                01111234568999999999874 5 45899999886432        111     1356777777777 999999


Q ss_pred             EEcCCCCceEEEE
Q psy3045         200 IRNEQESAQASGE  212 (267)
Q Consensus       200 ~~~~~~~~~~~~~  212 (267)
                      |.|..........
T Consensus       221 v~h~~~~~~~~~~  233 (248)
T 3u2s_H          221 VNHKPSNTKVDKK  233 (248)
T ss_dssp             EEEGGGTEEEEEE
T ss_pred             EEECCCCcceEEE
Confidence            9998765544433

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.67  E-value=1.2e-17  Score=123.01  Aligned_cols=154  Identities=16%  Similarity=0.274  Sum_probs=84.1

Q ss_pred             cCCCeEEEEEEecc---------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          28 PGGESFALLCEAQE---------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        28 ~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      .+|+++.|.|.+.+         +.|++++........   .............|.|......|+|.|+|.+.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            79999999999743         789996432111000   001111111122344444444559999999999877542


Q ss_pred             EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC-ceEEEEECCc
Q psy3045          96 VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTISWMKDGK  173 (267)
Q Consensus        96 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~  173 (267)
                      ....+.+.  ......+....                      ..+.. ....|+.+.|.|.+.|. |. +.+.|+++|.
T Consensus        96 ~~~~v~~~--~~~~~~P~v~~----------------------~~~~~-~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~  150 (207)
T 1l6x_A           96 IEKTISKA--KGQPREPQVYT----------------------LPPSR-DELTKNQVSLTCLVKGFYPSDIAVEWESNGQ  150 (207)
T ss_dssp             EEEEECCC--CSCCBCCEEEE----------------------ECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             eEEEeccC--CCCCcCCEEEE----------------------ECCCh-HHhcCCcEEEEEEEeCeECCCeEEEEEECCe
Confidence            22222110  01111111110                      00000 11235669999999985 54 4999999998


Q ss_pred             cCCCC--------CCCe------EEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         174 PVPDH--------NEPV------FRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       174 ~~~~~--------~~~~------l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+...        ....      |.+.....+|.|.|+|.|.|....
T Consensus       151 ~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          151 PENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            76421        1222      333333445789999999998643

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.66  E-value=6.5e-16  Score=115.18  Aligned_cols=113  Identities=20%  Similarity=0.358  Sum_probs=82.6

Q ss_pred             EEEecCCCEEEEeEeCCCCCc---eEEEEECCccCC-----------C------------------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVK---TISWMKDGKPVP-----------D------------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~---~~~W~~~~~~~~-----------~------------------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|+++.|.|.+.+.+.+   .+.|+|++....           .                  .....|.|.+++.+
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   93 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS   93 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH
Confidence            367889999999998765533   799999764321           0                  01347999999999


Q ss_pred             CCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeec-CCCCcEEEEECCEE
Q psy3045         192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKK  261 (267)
Q Consensus       192 d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~  261 (267)
                      |+|.|+|.|.|..+.......+.+.     +..........+.+|..+.|.|.+.| .|.|.|.|++++..
T Consensus        94 D~G~Y~C~a~n~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~  159 (226)
T 4f80_A           94 DSGKYLCYFQDGDFYEKALVELKVA-----ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE  159 (226)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE-----BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             HCeeEEEEEECCCcEEEEEEEEeec-----cceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence            9999999999987765555444443     12222233456788999999999987 59999999996543

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.66  E-value=8.1e-16  Score=115.02  Aligned_cols=165  Identities=18%  Similarity=0.286  Sum_probs=102.9

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......             .....|+...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (230)
T 3n9g_H            8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR   87 (230)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            4678999999999999853       999985433221111             1123455432      2359999999


Q ss_pred             cCCCeeEEEEEEcCCC-----cc---EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045          77 VEDSGKYLCVVNNSVG-----GE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF  148 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~-----~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  148 (267)
                      .+|+|.|+|.+.+..+     ..   ...+.|.|...+  ...+....                      . .....+..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~----------------------~-~~~~~~~~  142 (230)
T 3n9g_H           88 SEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS--TKGPSVFP----------------------L-APSSKSTS  142 (230)
T ss_dssp             GGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC--CBCCEEEE----------------------E-CCCCCCCT
T ss_pred             hhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC--CCCCEEEe----------------------c-CCCccccC
Confidence            9999999999987531     11   122345554211  11111110                      0 11113457


Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      |+.+.|.|.+.+. | .+.+.|  ++..+...          +     .+.|.|.....+| |.|+|.|.|..+......
T Consensus       143 g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~  219 (230)
T 3n9g_H          143 GGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  219 (230)
T ss_dssp             TCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEE
T ss_pred             CCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEE
Confidence            8999999999875 4 457999  66554321          1     1368888888888 999999999876555444


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .+.+
T Consensus       220 ~~~v  223 (230)
T 3n9g_H          220 RVEP  223 (230)
T ss_dssp             ECCC
T ss_pred             EccC
Confidence            4443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=1.7e-16  Score=117.14  Aligned_cols=125  Identities=15%  Similarity=0.357  Sum_probs=89.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC--------------CC-------CCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~--------------~~-------~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+.++|.|.+.+.|.+.+.|++++  ..+              ..       .....|.|.+++.+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            44558889999999999888877789999853  222              00       12247999999999999999


Q ss_pred             EEEEcCCCCc---eEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecC-CC-CcEEEEECCEEcCCC
Q psy3045         198 CVIRNEQESA---QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVNA  265 (267)
Q Consensus       198 C~~~~~~~~~---~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~l~~~  265 (267)
                      |.+.|.....   .....+.|... ..+|.+...+....+.+|+.+.|.|.+.|. |+ +.|.|+++|+.+..+
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            9999732211   11234555322 256777665544445679999999999987 54 799999999988643

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.66  E-value=4.8e-16  Score=117.89  Aligned_cols=125  Identities=20%  Similarity=0.361  Sum_probs=89.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-----CceEEEEECCc--cC--------------CC-------CCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDGK--PV--------------PD-------HNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~~--~~--------------~~-------~~~~~l~i~~~~~~d  192 (267)
                      +....+.+|++++|.|.+.+.+     .+.+.|++++.  .+              ..       .....|.|.+++.+|
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            4455789999999999998887     58999999642  11              00       112379999999999


Q ss_pred             CeEEEEEEEcCCCCc-eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcCCC
Q psy3045         193 KGMYQCVIRNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVNA  265 (267)
Q Consensus       193 ~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~~~  265 (267)
                      +|.|.|.+.+..+.. .....+.|.....+|.+...+....+.+|+.+.|.|.+.|. |++ .|.|+++|+.+..+
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  196 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  196 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCC
Confidence            999999999875432 12235666543346776654433334578999999999984 444 79999999987643

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.66  E-value=2.7e-16  Score=101.49  Aligned_cols=87  Identities=17%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      .||.|...+  .++.+.+|+++.|.|.+.+     +.|++++.....    ....++..    ...+|.|.+++.+|+|.
T Consensus         4 ~PP~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   77 (100)
T 3knb_A            4 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS----QEQGRFHIENTDDLTTLIIMDVQKQDGGL   77 (100)
T ss_dssp             EEEEECCCC--SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCT----TGGGTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEeCC--CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeee----eccceeeeecccceEEEEEcCCCccCCEE
Confidence            478998877  7899999999999999998     999996432211    11122222    23579999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEe
Q psy3045          83 YLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |+|.|.|..|..+..+.|.|..
T Consensus        78 Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           78 YTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEEE
Confidence            9999999999988888888763

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=110.97  Aligned_cols=121  Identities=18%  Similarity=0.341  Sum_probs=89.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCc---eEEEEECCccCCC------------------------------CCCCeEEecc
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVK---TISWMKDGKPVPD------------------------------HNEPVFRIDS  187 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~---~~~W~~~~~~~~~------------------------------~~~~~l~i~~  187 (267)
                      +....+..|+++.|.|.+.+.|.+   .+.|+|++..+..                              ....+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            345588899999999999887754   5899998765421                              1235699999


Q ss_pred             CCCCCCeEEEEEEEcCCCCceEE-EEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         188 VRKEDKGMYQCVIRNEQESAQAS-GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       188 ~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                      ++.+|+|.|.|.+.+..+..... ..+.+.  ..++..........+..|..+.|.|.+.|.|+|.|.|+++|..+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~  160 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVL--VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTT  160 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEE--BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEe--eeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccc
Confidence            99999999999998866544433 233332  233333334445567789999999999999999999999987664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.65  E-value=5.1e-16  Score=111.97  Aligned_cols=108  Identities=18%  Similarity=0.272  Sum_probs=83.9

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCcc--CC------------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKP--VP------------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~--~~------------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..  +.                        ......|.|.+++.+|+|.|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            3788999999999999888899999998753  10                        112455999999999999999


Q ss_pred             EEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       198 C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      |.+.+..+    ...+.|..      +.. +....+.+|+.+.|.|.+.+.|.|.+.|+++|..+
T Consensus        85 C~~~~~~~----~~~l~V~~------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  138 (184)
T 2ny1_B           85 CEVEDQKE----EVQLLVFG------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN  138 (184)
T ss_dssp             EEETTEEE----EEEEEEEE------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEEEcCCC----cEEEEEEE------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc
Confidence            99988643    34444431      112 23347889999999999999999999999998653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.65  E-value=1.2e-14  Score=107.33  Aligned_cols=194  Identities=20%  Similarity=0.280  Sum_probs=125.5

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ....+..|+.++|.|.+.+         ++|+|++..            +......|.+..+...|+|.|+|.+.+..|.
T Consensus        10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~------------IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gc   77 (304)
T 3shs_A           10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQP------------HENNTATLTVADATSENAGSYKVTVQDTDTM   77 (304)
T ss_dssp             SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEE------------CSCCSSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred             CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCcc------------ccCCcceEEeeeccccCCeEEEEEEEECCCC
Confidence            5567889999999999754         999996321            1112347889999999999999999998776


Q ss_pred             cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe--CC-CC-----Cce
Q psy3045          94 ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY--EG-NP-----VKT  165 (267)
Q Consensus        94 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~--~~-~p-----~~~  165 (267)
                      ......+.|.....+.     ..+                     ..+....+..|..+.|.+.+  .| .+     ...
T Consensus        78 s~tSs~VtVT~~a~l~-----i~i---------------------t~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yT  131 (304)
T 3shs_A           78 TSVESEVFLMEEAELI-----VNI---------------------TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELH  131 (304)
T ss_dssp             CEEECCCEEECBCCEE-----EEE---------------------SSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCE
T ss_pred             eeeeeeEEEeccCcee-----EEe---------------------cCCCceeccCCCeEEEEEEEeccCCCCcccCCCce
Confidence            5444444444322110     000                     01222244557788888877  54 33     469


Q ss_pred             EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe
Q psy3045         166 ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA  245 (267)
Q Consensus       166 ~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~  245 (267)
                      +.|++|+..+.  ....+++......++|.|+|++.+..+....+....+.... .+.-........+..|+.+.|...+
T Consensus       132 YQWyKngt~Is--gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~  208 (304)
T 3shs_A          132 YSWSKGEDVID--TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT-MNVDQDVVESKTVALGNEISLNYVV  208 (304)
T ss_dssp             EEEEETTEEEE--SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE-EEEEECCCSEEEEETTSCEEECCEE
T ss_pred             eEEeeCCeEcc--CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc-cccchhheEeehhhcCcEEEEEEEE
Confidence            99999998874  34578888888899999999999987644444444333211 1111112234467889999887654


Q ss_pred             e--------cCCCC--cEEEEE
Q psy3045         246 S--------GNPTP--EISWYL  257 (267)
Q Consensus       246 ~--------~~p~~--~i~W~~  257 (267)
                      .        |.|..  ++-||.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~  230 (304)
T 3shs_A          209 SEDIVGDSSGMPNLTIKYNWYL  230 (304)
T ss_dssp             EEECCSCCTTCCEEEEEEEEEE
T ss_pred             eeccccCCCCCCceEEEEEEEE
Confidence            2        34433  678883

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.65  E-value=5.9e-17  Score=120.21  Aligned_cols=119  Identities=15%  Similarity=0.249  Sum_probs=85.5

Q ss_pred             EecCCCEEEEeEeCCC---C-CceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGN---P-VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~---p-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +.+|+++.|.|.+.+.   | .+.+.|++++..+...              ....|.|..+..+|+|.|+|.+.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            6789999999999876   3 3799999998765432              12368888889999999999999987654


Q ss_pred             eEEEEEEE-ecccCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCC
Q psy3045         208 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       208 ~~~~~l~v-~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~  264 (267)
                      .....+.. .....+|.+...+......+|+.+.|.|.+.| .|++ .|.|+++|..+..
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  162 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN  162 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccC
Confidence            22222211 11235676655443322235999999999998 5665 9999999998743

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.65  E-value=5.7e-17  Score=119.29  Aligned_cols=119  Identities=15%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             EecCCCEEEEeEeCCCC----CceEEEEECCccCCCC---------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGNP----VKTISWMKDGKPVPDH---------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~~~~~---------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +.+|+++.|.|.+.+.+    ...+.|++++..+...         .     ...|.|.+++.+|+|.|+|.|.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998774    3499999998765421         0     1368888889999999999999987754


Q ss_pred             eEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcCC
Q psy3045         208 QASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  264 (267)
Q Consensus       208 ~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~~  264 (267)
                      .....+.+. ....+|.+...+.......|+.+.|.|.+.|. |++ .+.|++||+.+..
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  154 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAEN  154 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSC
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccC
Confidence            333333220 12356776554433223368999999999985 443 8999999998754

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.65  E-value=2e-16  Score=119.01  Aligned_cols=165  Identities=16%  Similarity=0.227  Sum_probs=100.0

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceecc------------------ccCCceEEEE------eeE
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVA------------------VPLNDRVKQV------SGT   69 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~------------------~~~~~~~~~~------~~~   69 (267)
                      ..+.+.+|++|+|.|.+.+         +.|++...+......                  .....|+...      ..+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            4678999999999999853         899986433221110                  1123455432      246


Q ss_pred             EEEeecccCCCeeEEEEEEcCCCc-------------cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcc
Q psy3045          70 LIIKEAKVEDSGKYLCVVNNSVGG-------------ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA  136 (267)
Q Consensus        70 l~i~~~~~~d~G~Y~C~~~~~~~~-------------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  136 (267)
                      |.|.+++.+|+|.|+|.+.+..+.             ......|.|...  ....+...                     
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~--~~~~P~v~---------------------  144 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA--STKGPSVF---------------------  144 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC--CCBCCEEE---------------------
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC--CCcCCEEE---------------------
Confidence            999999999999999999764310             011123444321  01111111                     


Q ss_pred             cccCCceEEEecCCCEEEEeEeCCC-CC-ceEEEEECCccCC--------CCC-----CCeEEeccCCCCCCeEEEEEEE
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTISWMKDGKPVP--------DHN-----EPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~--------~~~-----~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                        ..+....+..|+.+.|.|.+.+. |. ..+.|++++..+.        ..+     .+.|.|.....+| |.|+|.|.
T Consensus       145 --~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~  221 (239)
T 3tv3_H          145 --PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  221 (239)
T ss_dssp             --EECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEE
T ss_pred             --EECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEE
Confidence              00111134468999999999874 53 3689999886432        111     1357787777788 99999999


Q ss_pred             cCCCCceEEEEE
Q psy3045         202 NEQESAQASGEL  213 (267)
Q Consensus       202 ~~~~~~~~~~~l  213 (267)
                      |..+.......+
T Consensus       222 h~~~~~~~~~~l  233 (239)
T 3tv3_H          222 HKPSNTKVDKRV  233 (239)
T ss_dssp             EGGGTEEEEEEC
T ss_pred             ECCCCceEEEEe
Confidence            987654444333

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.65  E-value=5.6e-16  Score=117.02  Aligned_cols=124  Identities=19%  Similarity=0.363  Sum_probs=88.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEE----------------CCccCCC-------------CCCCeEEeccCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK----------------DGKPVPD-------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~----------------~~~~~~~-------------~~~~~l~i~~~~~~  191 (267)
                      +....+.+|+++.|.|.+.+.+.+.+.|+|                ++.....             .....|.|.+++.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            445588899999999999998889999998                2221111             12347999999999


Q ss_pred             CCeEEEEEEEcCCC----CceEEEEEEEec---ccCCCeeec-CCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEE
Q psy3045         192 DKGMYQCVIRNEQE----SAQASGELKLGG---RFDPPVIKE-SFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKK  261 (267)
Q Consensus       192 d~g~y~C~~~~~~~----~~~~~~~l~v~~---~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~  261 (267)
                      |+|.|.|.+.+..+    .......+.|..   ...+|.+.. .+....+.+|+.+.|.|.+.|.|++  .+.|+++|+.
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  167 (246)
T 4dzb_B           88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  167 (246)
T ss_dssp             GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence            99999999987542    111233455543   223555543 3344456679999999999987665  8999999998


Q ss_pred             cCC
Q psy3045         262 LVN  264 (267)
Q Consensus       262 l~~  264 (267)
                      |..
T Consensus       168 l~~  170 (246)
T 4dzb_B          168 VHS  170 (246)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            865

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.3e-15  Score=115.10  Aligned_cols=118  Identities=18%  Similarity=0.385  Sum_probs=86.6

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECCc--cC-------------------C---------CCCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDGK--PV-------------------P---------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~--~~-------------------~---------~~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.|  .+.+.|+++..  .+                   .         .....+|.|.+++.+
T Consensus        12 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   91 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHH
Confidence            4788999999999999887  67899998431  10                   0         011246999999999


Q ss_pred             CCeEEEEEEEcCCCC--ceEEEEEEEecc------------cCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEE
Q psy3045         192 DKGMYQCVIRNEQES--AQASGELKLGGR------------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL  257 (267)
Q Consensus       192 d~g~y~C~~~~~~~~--~~~~~~l~v~~~------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~  257 (267)
                      |+|.|.|.+.+..+.  ......|.|...            ..++.+...+....+.+|+.+.|.|.+.+.|.+.+.|||
T Consensus        92 D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  171 (247)
T 2ghw_B           92 DTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQ  171 (247)
T ss_dssp             GCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             HCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEE
Confidence            999999999987321  112335566532            124555556667788999999999999999999999999


Q ss_pred             --CCEE
Q psy3045         258 --DGKK  261 (267)
Q Consensus       258 --~~~~  261 (267)
                        +|..
T Consensus       172 ~~~g~~  177 (247)
T 2ghw_B          172 QKPGQA  177 (247)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence              5553

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.65  E-value=6.1e-16  Score=110.16  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=82.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC-------------------CCCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~-------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+..|++++|.|.+.+ |.+.+.|++++..+.                   ...+.+|.|.+++.+|+|.|.|.+.+..+
T Consensus         6 ~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~   84 (171)
T 1ccz_A            6 YGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD   84 (171)
T ss_dssp             EEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             EEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC
Confidence            6788999999999844 788999999875321                   01347899999999999999999998776


Q ss_pred             CceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcC
Q psy3045         206 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       206 ~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~  263 (267)
                        ...+.|.|......|.+.....        ...|.|.+.+.|.|.+.|+++|..+.
T Consensus        85 --~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~  132 (171)
T 1ccz_A           85 --TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLR  132 (171)
T ss_dssp             --CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEE
T ss_pred             --cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECc
Confidence              5666777765434455443221        13799999999999999999998875

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.64  E-value=6.8e-16  Score=100.83  Aligned_cols=79  Identities=23%  Similarity=0.375  Sum_probs=68.1

Q ss_pred             ccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       138 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ...+....+.+|+.+.|.|.+.|.|.+.+.|++|+..+..+.         ...|.|.++..+|+|.|+|.|.|..|...
T Consensus        17 ~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   96 (107)
T 3knb_B           17 LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAY   96 (107)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEE
Confidence            344556689999999999999999999999999999886542         24799999999999999999999999888


Q ss_pred             EEEEEEEe
Q psy3045         209 ASGELKLG  216 (267)
Q Consensus       209 ~~~~l~v~  216 (267)
                      .++.|.|.
T Consensus        97 ~~~~l~V~  104 (107)
T 3knb_B           97 AAAAVTVL  104 (107)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.64  E-value=2.3e-15  Score=108.09  Aligned_cols=111  Identities=22%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             EEEecCCCEEEEeEeC--CCCCceEEEEE--CCccCC----------C------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         144 QTIDFGRPAQFTCKYE--GNPVKTISWMK--DGKPVP----------D------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~--~~p~~~~~W~~--~~~~~~----------~------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .....|+++.|.|...  +.+.+.|.|++  ++..+.          .      ..+.+|.|.+++.+|+|.|+|.+.|.
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~   88 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT   88 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeC
Confidence            4778899999999543  34567999999  876651          1      13468999999999999999999998


Q ss_pred             CCCceE--EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEc
Q psy3045         204 QESAQA--SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  262 (267)
Q Consensus       204 ~~~~~~--~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l  262 (267)
                      .+....  .+.|.|.....+|.+..        .+..+.|.|.+.+.|.+.|.|+++|+.+
T Consensus        89 ~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           89 KGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             TSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             CCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC
Confidence            776543  45566654334454433        2347899999999999999999999876

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=3e-15  Score=112.56  Aligned_cols=118  Identities=22%  Similarity=0.417  Sum_probs=86.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCC----CceEEEEECC--ccCC----------C-----------CCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP----VKTISWMKDG--KPVP----------D-----------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~~--~~~~----------~-----------~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|+.+.|.|.+.+.|    .+.+.|++++  ..+.          .           .....|.|.+++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            4455889999999999999988    7899999963  2110          0           1123799999999999


Q ss_pred             eEEEEEEEcCCCC-ceEEEEEEEecccC---CCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEEC
Q psy3045         194 GMYQCVIRNEQES-AQASGELKLGGRFD---PPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD  258 (267)
Q Consensus       194 g~y~C~~~~~~~~-~~~~~~l~v~~~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~  258 (267)
                      |.|.|.+.+..+. ......+.|.....   ++.+...+....+.+|+.+.|.|.+.+.|.  +.+.|+|+
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            9999999987543 23345566654221   223334455667899999999999999874  59999995

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.63  E-value=9.1e-16  Score=99.01  Aligned_cols=78  Identities=24%  Similarity=0.496  Sum_probs=67.2

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|++|+..+...           ....|.|.++..+|+|.|+|.|.|..|..
T Consensus        10 ~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   89 (100)
T 3knb_A           10 ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD   89 (100)
T ss_dssp             CCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEE
Confidence            3455668999999999999999999999999999888643           22479999999999999999999999988


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.|.|+
T Consensus        90 ~~~~~l~V~   98 (100)
T 3knb_A           90 SATVNIHIR   98 (100)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888775

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.63  E-value=8.9e-16  Score=100.28  Aligned_cols=87  Identities=22%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      ..||.|...+  .++.+.+|+++.|.|.+.+     +.|++++...      ....++..    ...+|.|.+++.+|+|
T Consensus        11 ~~pP~f~~~p--~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (107)
T 3knb_B           11 GSPPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL------AASERLSFPADGAEHGLLLTAALPTDAG   82 (107)
T ss_dssp             CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC------CCCSSEECCEETTEEEEEESSCCGGGCE
T ss_pred             CCCCEEEeCC--CcEEEeCCCcEEEEEEEEEecCCEEEEEECcccc------cceeeEEEeecCceEEEEEecCChhhCE
Confidence            3479999888  7899999999999999998     9999964321      12223221    2357999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEec
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      .|+|.|.|..|.....+.|.|..+
T Consensus        83 ~Y~C~a~N~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           83 VYVCRARNAAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             EEEEEEEECCCEEEEEEEEEEEcC
Confidence            999999999999888888888764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.63  E-value=2.9e-15  Score=113.80  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=98.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      +.+|+|.+++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            3567999999999999853       99998533321111             11233455432      2359999999


Q ss_pred             cCCCeeEEEEEEcCCC---------c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045          77 VEDSGKYLCVVNNSVG---------G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT  145 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~---------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  145 (267)
                      .+|+|.|+|.+.+..+         .  ....+.|.|...+  ...+...                      .. .....
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~----------------------~~-~~~~~  165 (256)
T 3sob_H          111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS--TKGPSVF----------------------PL-APSSK  165 (256)
T ss_dssp             GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC--CBCCEEE----------------------EE-CCC--
T ss_pred             cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC--CCCCEEE----------------------EE-CCCcc
Confidence            9999999999986431         1  1122345554211  1111111                      00 11113


Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      +.+|+.++|.|.+.+. | +..+.|  ++..+...          +     .+.|.|.....+| |.|+|.+.|......
T Consensus       166 ~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~  242 (256)
T 3sob_H          166 STSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  242 (256)
T ss_dssp             ---TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             cccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcc
Confidence            4579999999998874 4 458999  55544321          1     1367788888888 999999999876554


Q ss_pred             EEEEE
Q psy3045         209 ASGEL  213 (267)
Q Consensus       209 ~~~~l  213 (267)
                      ....+
T Consensus       243 ~~~~~  247 (256)
T 3sob_H          243 VDKKV  247 (256)
T ss_dssp             EEEEC
T ss_pred             eEEEe
Confidence            44443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.63  E-value=1.3e-16  Score=119.52  Aligned_cols=125  Identities=16%  Similarity=0.323  Sum_probs=71.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cC-----------C--CC--------CCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PV-----------P--DH--------NEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~-----------~--~~--------~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++.  .+           .  ..        ....|.|.+++.+|+|.|.
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  109 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY  109 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence            344478889999999999888777899998542  11           0  00        1126999999999999999


Q ss_pred             EEEEcCCCCc-eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCC-C-cEEEEECCEEcCCC
Q psy3045         198 CVIRNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-P-EISWYLDGKKLVNA  265 (267)
Q Consensus       198 C~~~~~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W~~~~~~l~~~  265 (267)
                      |.+.+..+.. .....+.|.....+|.+...+......+|+.+.|.|.+.|.++ + .+.|+++|+.+..+
T Consensus       110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            9998865432 1123455543334677666443333457999999999998544 3 79999999887543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.63  E-value=5.4e-15  Score=111.02  Aligned_cols=116  Identities=14%  Similarity=0.318  Sum_probs=84.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--c-----------------cCC--------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--K-----------------PVP--------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~-----------------~~~--------~~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|++++|.|. .+.|.+.+.|+++.  .                 .+.        ......|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            44558899999999999 67788999999951  1                 011        11245799999999999


Q ss_pred             eEEEEEEEcCCCCc-----eEEEEEEEecccCCC-----------eeecCCceeEEecCCcEEEEEEeecCCCCcEEEEE
Q psy3045         194 GMYQCVIRNEQESA-----QASGELKLGGRFDPP-----------VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL  257 (267)
Q Consensus       194 g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~p-----------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~  257 (267)
                      |.|.|.+.+..+..     .....+.|..  .++           .+...+....+.+|+.+.|.|.+.+.|.+.+.|||
T Consensus        86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~--~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k  163 (238)
T 2p1y_A           86 SVYFCASGDLGQTNERLFFGHGTKLSVLG--SADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQ  163 (238)
T ss_dssp             EEEEEEEEC------CEEECCCEEEEEEC--CCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEE
T ss_pred             eeEEEEEEeCCCccccceeCCCeEEEEec--cCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEE
Confidence            99999999875421     1123455543  222           55555667789999999999999999999999999


Q ss_pred             CC
Q psy3045         258 DG  259 (267)
Q Consensus       258 ~~  259 (267)
                      ++
T Consensus       164 ~~  165 (238)
T 2p1y_A          164 QF  165 (238)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.63  E-value=4.9e-15  Score=109.33  Aligned_cols=119  Identities=21%  Similarity=0.342  Sum_probs=86.3

Q ss_pred             CceEEEecCCCEEEEeEeCCC-------CCceEEEEECCcc------CC---------C-------------CCCCeEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-------PVKTISWMKDGKP------VP---------D-------------HNEPVFRI  185 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-------p~~~~~W~~~~~~------~~---------~-------------~~~~~l~i  185 (267)
                      +....+.+|+.+.|.|.+.+.       +.+.+.|++++..      +.         .             ....+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            445588899999999998754       5679999997642      10         0             11347999


Q ss_pred             ccCCCCCCeEEEEEEEcCCCCc----eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecC----CCCcEEEEE
Q psy3045         186 DSVRKEDKGMYQCVIRNEQESA----QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN----PTPEISWYL  257 (267)
Q Consensus       186 ~~~~~~d~g~y~C~~~~~~~~~----~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~  257 (267)
                      .+++.+|+|.|.|.+.+..+..    .....|.|.....+|.+....   .+.+|+.+.|.|.+.+.    |.|.+.|++
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~---~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~  163 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE---PLESGRPTRLSCSLPGSCEAGPPLTFSWTG  163 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C---CCCTTCCEEEEEECTTCCSCSSCCEEEEES
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc---cccCCCeEEEEEEeccCCCCCCCceEEEeC
Confidence            9999999999999999875221    124566666544456665422   36789999999999874    788999999


Q ss_pred             CCEEc
Q psy3045         258 DGKKL  262 (267)
Q Consensus       258 ~~~~l  262 (267)
                      +|..+
T Consensus       164 ~~~~~  168 (214)
T 2zg1_A          164 NALSP  168 (214)
T ss_dssp             STTSS
T ss_pred             CCCcc
Confidence            98654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.62  E-value=4e-15  Score=123.05  Aligned_cols=155  Identities=15%  Similarity=0.261  Sum_probs=96.7

Q ss_pred             EecCCCeEEEEEEecc--------eeeeecccCccee--ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045          26 KKPGGESFALLCEAQE--------NMWFKFIEGSSRK--VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES   95 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (267)
                      .+.+|+++.|.|.+.+        +.| ++.......  .............+.|.|.++..+|+|.|+|.+.|..+...
T Consensus       258 ~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          258 DLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             HhccCCceEEEEEEEcccCCCceEEEE-CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence            3689999999999865        789 432111000  00001111122456799999999999999999999887754


Q ss_pred             EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-C-CceEEEEECCc
Q psy3045          96 VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-P-VKTISWMKDGK  173 (267)
Q Consensus        96 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~  173 (267)
                      ....+.+..   ....+...                      ...+....+..|+.+.|.|.+.+. | .+.+.|+++|.
T Consensus       337 ~~~~v~~~~---~~~~P~v~----------------------~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~  391 (475)
T 1iga_A          337 LTATLSKSG---NTFRPEVH----------------------LLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQ  391 (475)
T ss_pred             eEEEeecCC---CCCCCeEE----------------------EECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCE
Confidence            433333211   00111111                      001111135678999999999986 4 35999999998


Q ss_pred             cCCCC-------------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         174 PVPDH-------------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       174 ~~~~~-------------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+...             ..      +.|.+.....+|.|.|+|.|.|....
T Consensus       392 ~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          392 ELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             ECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            76432             11      23556666677899999999998644

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=121.68  Aligned_cols=154  Identities=14%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             ecCCCeEEEEEEecc---------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          27 KPGGESFALLCEAQE---------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        27 v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      +..|++++|.|.+.+         +.|++++.......   ..............|.|..+..+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            789999999999865         67999752211110   111122223345579999999999999999999876643


Q ss_pred             EEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-C-CceEEEEECC
Q psy3045          95 SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-P-VKTISWMKDG  172 (267)
Q Consensus        95 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~  172 (267)
                      .....+.+.  ......+...                       ..+.......|+.++|.|.+.++ | .+.|.|++||
T Consensus       260 ~~~~~v~~~--~~~~~~P~v~-----------------------v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  314 (376)
T 2aty_A          260 PIEKTISKT--KGRPKAPQLY-----------------------TIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNG  314 (376)
T ss_pred             ceEEEEcCC--CCCCcCCeEE-----------------------eeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECC
Confidence            322222110  0101111111                       00111123348899999999986 3 5699999999


Q ss_pred             ccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         173 KPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       173 ~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ..+...        ..      +.|.+.....+|.|.|+|.|.|...
T Consensus       315 ~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          315 QPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            876421        11      2356666666778999999999764

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=114.75  Aligned_cols=126  Identities=17%  Similarity=0.377  Sum_probs=88.2

Q ss_pred             ccCCceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccC------------------------C--CCCCCeEEeccCC
Q psy3045         138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPV------------------------P--DHNEPVFRIDSVR  189 (267)
Q Consensus       138 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~------------------------~--~~~~~~l~i~~~~  189 (267)
                      ...+....+.+|++++|.|.+. .+.+.+.|+|.  +...                        .  ......|.|.+++
T Consensus        30 ~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (268)
T 3pl6_D           30 SQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE  108 (268)
T ss_dssp             BCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred             EeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence            3445566889999999999976 56789999982  2111                        0  1124579999999


Q ss_pred             CCCCeEEEEEEEcC--CCCceEEEEEEEec---ccCCCeeec-CCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEE
Q psy3045         190 KEDKGMYQCVIRNE--QESAQASGELKLGG---RFDPPVIKE-SFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKK  261 (267)
Q Consensus       190 ~~d~g~y~C~~~~~--~~~~~~~~~l~v~~---~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~  261 (267)
                      .+|+|.|.|.+.+.  .........+.|..   ...+|.+.. .+....+.+|+.+.|.|.+.|.+++  .+.|+++|+.
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~  188 (268)
T 3pl6_D          109 RGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  188 (268)
T ss_dssp             GGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred             cccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence            99999999999974  22222234455553   223565443 3444455669999999999986654  8999999998


Q ss_pred             cCC
Q psy3045         262 LVN  264 (267)
Q Consensus       262 l~~  264 (267)
                      +..
T Consensus       189 l~~  191 (268)
T 3pl6_D          189 VHS  191 (268)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            854

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.61  E-value=2e-15  Score=110.68  Aligned_cols=109  Identities=22%  Similarity=0.375  Sum_probs=77.5

Q ss_pred             EecCCCEEEEeEeCCCCCceEEEEECCccCCC--CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec------
Q psy3045         146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG------  217 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~------  217 (267)
                      +.+|+++.|.|.+   |.+.+.|+|+|..+..  .....|.|..++.+|+|.|+|.+.+... .  .+.+.+..      
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~~~v~v~~~~~~~~   88 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS-K--PLQVYYRMGSADDA   88 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSSCC-C--CEEEEEEC------
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCCC-e--eEEEEEEEeccccc
Confidence            4579999999998   7789999999988753  3567899999999999999999755322 1  23333320      


Q ss_pred             ----------------------ccCCCeeecCCceeEEe-cCCcEEEEEEeecCCCCcEEEEECCEEcCC
Q psy3045         218 ----------------------RFDPPVIKESFSDETLN-PGPNYYFKCIASGNPTPEISWYLDGKKLVN  264 (267)
Q Consensus       218 ----------------------~~~~p~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~  264 (267)
                                            ...++.+...+ . .+. +|+.+.|.|.  +.|.|.+.|+++|..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           89 KKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-Y-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             ------------------------------CCC-C-EEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             cccccccccccccccccccccccccccceecCC-c-eeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence                                  00022222222 2 344 8999999998  789999999999998754

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.61  E-value=6.9e-15  Score=111.74  Aligned_cols=117  Identities=16%  Similarity=0.346  Sum_probs=87.8

Q ss_pred             ceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVR  189 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~  189 (267)
                      ....+.+|++++|.|.+.+.|  .+.+.|++++  ..+                   ..         .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence            345788999999999998875  6799999842  211                   00         112479999999


Q ss_pred             CCCCeEEEEEEEcCCCC---c--eEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC-----cEEEEE--
Q psy3045         190 KEDKGMYQCVIRNEQES---A--QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-----EISWYL--  257 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~~---~--~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~i~W~~--  257 (267)
                      .+|+|.|.|.+.+..+.   .  .....|.|.   .+|.+...+....+.+|+.++|.|.+.+.|++     .+.|||  
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~---~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS---SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCEEEEEC---CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCceeeeec---ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence            99999999999997552   1  123455554   45666666777789999999999999998875     999999  


Q ss_pred             CCEE
Q psy3045         258 DGKK  261 (267)
Q Consensus       258 ~~~~  261 (267)
                      +|+.
T Consensus       165 ~g~~  168 (256)
T 1nqb_A          165 PGQS  168 (256)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            6654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.61  E-value=3.3e-15  Score=111.38  Aligned_cols=158  Identities=19%  Similarity=0.315  Sum_probs=96.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (226)
T 3mlr_H            8 GGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ   87 (226)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred             CCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            4678999999999999844       99998643322111             11123444432      2469999999


Q ss_pred             cCCCeeEEEEEEcCCCc---------cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEe
Q psy3045          77 VEDSGKYLCVVNNSVGG---------ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTID  147 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~---------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~  147 (267)
                      .+|+|.|+|.+.+..+.         -...+.|.|...+  ...|....                       .+....+.
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--~~~P~i~~-----------------------~~~~~~~~  142 (226)
T 3mlr_H           88 ASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT--TKGPSVFP-----------------------LAPSSKST  142 (226)
T ss_dssp             GGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC--CBCCEEEE-----------------------EEEEECST
T ss_pred             cccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC--CCCCcEEE-----------------------ecCccccc
Confidence            99999999999764210         0112234443211  11111110                       01111345


Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCC----------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPD----------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~----------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .|+.+.|.|.+.+. | .+.+.|  ++..+..          .+     .+.|.|.....+| |.|+|.|.|..+...
T Consensus       143 ~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  217 (226)
T 3mlr_H          143 SGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  217 (226)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             CCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence            78999999999875 4 468999  5444321          11     1367788888888 999999999875543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.61  E-value=2.6e-15  Score=111.58  Aligned_cols=118  Identities=15%  Similarity=0.352  Sum_probs=85.2

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC---------------------CC---------CCCCeEEeccCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV---------------------PD---------HNEPVFRIDSVRK  190 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~---------------------~~---------~~~~~l~i~~~~~  190 (267)
                      .+.+|+++.|.|.+.+.+  .+.+.|++++  ..+                     ..         .....|.|.+++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   90 (222)
T 1q9r_B           11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (222)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCc
Confidence            788899999999998765  6799999853  211                     00         1124799999999


Q ss_pred             CCCeEEEEEEEcCCC-----CceEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         191 EDKGMYQCVIRNEQE-----SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      +|+|.|.|.+.+..+     .......+.|... ..+|.+........+.+|+.+.|.|.+.|. |.| .+.|+++|+.+
T Consensus        91 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  170 (222)
T 1q9r_B           91 EDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  170 (222)
T ss_dssp             GGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             ccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEc
Confidence            999999999998653     1222345666531 235665544333345689999999999985 888 99999999765

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=9.8e-16  Score=114.75  Aligned_cols=124  Identities=16%  Similarity=0.266  Sum_probs=85.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-Cc-eEEEEECC--ccC----------C---C--------CCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-VK-TISWMKDG--KPV----------P---D--------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-~~-~~~W~~~~--~~~----------~---~--------~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|+++.|.|.+.+.+ .+ .+.|++++  ..+          .   .        .....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            4445788999999999998764 34 79999863  221          0   0        012379999999999999


Q ss_pred             EEEEEEcCCCC---ceEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEcCC
Q psy3045         196 YQCVIRNEQES---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  264 (267)
Q Consensus       196 y~C~~~~~~~~---~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l~~  264 (267)
                      |.|.+.+..+.   ......+.|... ..+|.+...+......+|+.+.|.|.+.|.+++  .+.|++||+.+..
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  180 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKA  180 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCS
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCC
Confidence            99999998762   111233444211 135555543333334468899999999986543  8999999998854

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.60  E-value=1.4e-14  Score=122.72  Aligned_cols=123  Identities=24%  Similarity=0.404  Sum_probs=94.4

Q ss_pred             CceEEEecCCCEEEEeEe-CCCCCceEEEEECCccCC------------------CCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVP------------------DHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~------------------~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      .....+..|++++|.|.+ .+.|.+.+.|++++..+.                  .....+|.|.+++.+|+|.|+|.+.
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence            345678899999999998 678889999999876321                  0123579999999999999999999


Q ss_pred             cCCCCc-eEEEEEEEecccCCCeeecCCceeEEecCCcE-EEEEEeec-CCCCcEEEEECCEEcCCC
Q psy3045         202 NEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNY-YFKCIASG-NPTPEISWYLDGKKLVNA  265 (267)
Q Consensus       202 ~~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~~-~p~~~i~W~~~~~~l~~~  265 (267)
                      +..+.. .....|.|......|.+.....  .+.+|... .|.|.+.+ .|.|.|.|++||+.|...
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~  517 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN  517 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC
Confidence            988776 5667777765444555554433  35556554 56999998 699999999999998643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=2.6e-15  Score=114.20  Aligned_cols=117  Identities=18%  Similarity=0.297  Sum_probs=84.5

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------------------CC---------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------------------PD---------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------------------~~---------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.+.+.|  .+.+.|++++  ..+                  ..         .....|.|.+++.+|+
T Consensus        11 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   90 (257)
T 1f3r_B           11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (257)
T ss_dssp             EECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCC
T ss_pred             cccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccC
Confidence            688899999999998875  6799999852  211                  00         1124799999999999


Q ss_pred             eEEEEEEEcCCC-------Cc--eEEEEEEEeccc------------CCCeeecCCceeEEecCCcEEEEEEeecCCCCc
Q psy3045         194 GMYQCVIRNEQE-------SA--QASGELKLGGRF------------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPE  252 (267)
Q Consensus       194 g~y~C~~~~~~~-------~~--~~~~~l~v~~~~------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  252 (267)
                      |.|.|.+.+..+       ..  .....|.|....            .++.+...+....+.+|+.++|.|.+.+.|.+.
T Consensus        91 G~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  170 (257)
T 1f3r_B           91 GTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNY  170 (257)
T ss_dssp             EEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTC
T ss_pred             EEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCc
Confidence            999999999753       11  123355565321            112334445566788999999999999999899


Q ss_pred             EEEEE--CCEE
Q psy3045         253 ISWYL--DGKK  261 (267)
Q Consensus       253 i~W~~--~~~~  261 (267)
                      +.|||  +|+.
T Consensus       171 v~W~k~~~g~~  181 (257)
T 1f3r_B          171 LAWYQQKLGEA  181 (257)
T ss_dssp             EEEEEECTTSC
T ss_pred             EEEEEECCCCC
Confidence            99999  5654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.60  E-value=1.2e-15  Score=112.44  Aligned_cols=118  Identities=16%  Similarity=0.355  Sum_probs=84.6

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------------------CC---------CCCCeEEeccCCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------------------PD---------HNEPVFRIDSVRKED  192 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------------------~~---------~~~~~l~i~~~~~~d  192 (267)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+|++  ...                  ..         .....|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence            3788899999999998875  4799999853  211                  00         012389999999999


Q ss_pred             CeEEEEEEEcCCCCceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         193 KGMYQCVIRNEQESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       193 ~g~y~C~~~~~~~~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      +|.|.|.+.+.. .......+.|.. ...+|.+...+....+.+|+.+.|.|.+.|. |.| .+.|+++|..+
T Consensus        90 ~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H           90 TATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             CEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence            999999999863 122234555542 1235665544433456789999999999987 878 99999998754

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.60  E-value=4.1e-16  Score=117.15  Aligned_cols=119  Identities=15%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             EecCCCEEEEeEeCCC---CCc-eEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGN---PVK-TISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~---p~~-~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +.+|+.++|.|.+.+.   |.+ .+.|++++..+...              ....|.|..+..+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6689999999999876   655 99999988665321              11368888888999999999999987754


Q ss_pred             eEEEEEEE-ecccCCCeeecCCceeEEecCCcEEEEEEeecC-CC-CcEEEEECCEEcCC
Q psy3045         208 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  264 (267)
Q Consensus       208 ~~~~~l~v-~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~l~~  264 (267)
                      .....+.+ .....+|.+...+.......|+.+.|.|.+.|+ |+ ..|.|++||+.+..
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  168 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN  168 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCC
Confidence            33333322 112356766654433223358889999999985 44 38999999998753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.60  E-value=9.5e-15  Score=111.60  Aligned_cols=112  Identities=19%  Similarity=0.382  Sum_probs=84.6

Q ss_pred             CceEEEecCCCEEEEeEeC---CCCCceEEEEECCccCCC-----------------------------CCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYE---GNPVKTISWMKDGKPVPD-----------------------------HNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~---~~p~~~~~W~~~~~~~~~-----------------------------~~~~~l~i~~~  188 (267)
                      +....+.+|+.+.|.|.+.   +.+.+.+.|++++.....                             .....|.|.++
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   91 (268)
T 3mj6_A           12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV   91 (268)
T ss_dssp             CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred             CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence            4455888999999999987   667789999996543211                             12377999999


Q ss_pred             CCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe---ecCCCCcEEEEEC
Q psy3045         189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLD  258 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~W~~~  258 (267)
                      +.+|+|.|+|.+.+..+.......+.+.+...      .+....+.+|+.+.|.|.+   .+.|.+.+.|+++
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           92 QKADEGIYTCEIRLKNESMVMKKPVELWVLPE------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CGGGCEEEEEEEEETTCCCEEEEEEEEEEECC------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             CHhHCEEEEEEEEecCCcceEEEEEEEEEecc------CCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            99999999999998765554444444443212      2345678899999999999   5778899999994

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.60  E-value=9e-15  Score=115.70  Aligned_cols=162  Identities=16%  Similarity=0.242  Sum_probs=100.6

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEec-----------------c--eeeeecccCcceeccc----------c-CCce--
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEAQ-----------------E--NMWFKFIEGSSRKVAV----------P-LNDR--   62 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~~-----------------~--~~W~~~~~~~~~~~~~----------~-~~~~--   62 (267)
                      .|....+...+.+.+|++++|.|.+.                 .  +.|++...+.......          . ...+  
T Consensus       158 ~f~V~tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~  237 (401)
T 3f8u_B          158 VLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVA  237 (401)
T ss_dssp             EEEEEESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEE
T ss_pred             EEEEeCCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEE
Confidence            35544444678999999999999864                 2  8999863331110000          0 0011  


Q ss_pred             -----------EEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeec
Q psy3045          63 -----------VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI  131 (267)
Q Consensus        63 -----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  131 (267)
                                 ....+.+|+|.+++.+|+|.|+|.+.+..+.....+.|.|..++.....+..                 
T Consensus       238 f~~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-----------------  300 (401)
T 3f8u_B          238 FAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-----------------  300 (401)
T ss_dssp             EEEESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-----------------
T ss_pred             EEeecccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-----------------
Confidence                       2235679999999999999999999988776666777777764432211110                 


Q ss_pred             CCCcccccCCceEEEecCC-CEEEEeEeCCC-CC--ceEEEE-ECCc---c--CC---------CCCC------CeEEec
Q psy3045         132 SPPLAAGVEPTVQTIDFGR-PAQFTCKYEGN-PV--KTISWM-KDGK---P--VP---------DHNE------PVFRID  186 (267)
Q Consensus       132 ~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~-p~--~~~~W~-~~~~---~--~~---------~~~~------~~l~i~  186 (267)
                                 ...+..|+ .++|.|.+.+. |.  +.+.|. +++.   .  ..         ...+      +.|.+.
T Consensus       301 -----------~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~  369 (401)
T 3f8u_B          301 -----------LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP  369 (401)
T ss_dssp             -----------CCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECC
T ss_pred             -----------ceeecCCCccEEEEEEecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEc
Confidence                       00134576 79999999885 55  799995 7652   1  11         0111      223333


Q ss_pred             cCCCC-CCeEEEEEEEcCC
Q psy3045         187 SVRKE-DKGMYQCVIRNEQ  204 (267)
Q Consensus       187 ~~~~~-d~g~y~C~~~~~~  204 (267)
                      ..+.+ +.+.|+|.+.|..
T Consensus       370 ~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          370 PVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             CCCGGGTTCEEEEEEECTT
T ss_pred             cCccccCCCEEEEEEEcCC
Confidence            33222 3459999999976

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.59  E-value=1.6e-14  Score=103.75  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=81.8

Q ss_pred             eEEEecCCCEEEEeEeCC-CCCceEEEEEC-CccC-------------CC--------CCCCeEEeccCCCCCCeEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEG-NPVKTISWMKD-GKPV-------------PD--------HNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~-~~~~-------------~~--------~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      ...+.+|++++|.|.+.+ .+.+.+.|+|+ +..+             ..        ..+.+|.|.+++.+|+|.|+|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~   87 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR   87 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence            447889999999999754 34679999994 2111             00        2346799999999999999999


Q ss_pred             EEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEECCEEcC
Q psy3045         200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  263 (267)
Q Consensus       200 ~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~l~  263 (267)
                      +.+.. .....+.|.|......|.+..        .+..+.|.|.+ .| |.|.|.|+++|..+.
T Consensus        88 v~~~~-~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           88 MLHET-EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             EESSS-EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             EEcCC-eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence            98876 445566777764333344432        34669999999 56 889999999998763

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.59  E-value=4.3e-16  Score=116.87  Aligned_cols=118  Identities=17%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             EecCCCEEEEeEeCCCC----CceEEEEECCccCCCC---------CC-----CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGNP----VKTISWMKDGKPVPDH---------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~~~~~---------~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +..|+.+.|.|.+.++.    ...++|+++|..+...         +.     +.|.|.....+|.|.|+|.|.|..+..
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            44599999999999864    3489999999876421         11     346666556667899999999987643


Q ss_pred             eEEEEEEE-ecccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcC
Q psy3045         208 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  263 (267)
Q Consensus       208 ~~~~~l~v-~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~  263 (267)
                      .....+.+ .....+|.+...+.......|+.+.|.|.+.|+ |++ .+.|++||+.+.
T Consensus       116 ~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~  174 (240)
T 4acp_A          116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  174 (240)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECC
Confidence            33333321 112356776665443333458999999999985 544 799999999875

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.59  E-value=8.8e-16  Score=114.86  Aligned_cols=121  Identities=13%  Similarity=0.223  Sum_probs=83.1

Q ss_pred             EEEecCCCEEEEeEeCCC-CC-c-eEEEEECCccC-CCC--------CC-----CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PV-K-TISWMKDGKPV-PDH--------NE-----PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~-~-~~~W~~~~~~~-~~~--------~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..+..|+.++|.|.+.+. |. + .+.|+++|..+ ...        +.     ..|.|..+..+|.|.|+|.+.|..+.
T Consensus        23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  102 (231)
T 2w59_A           23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP  102 (231)
T ss_dssp             HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence            356689999999999885 63 4 99999999877 321        11     25888888889999999999998765


Q ss_pred             ceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEEcCC
Q psy3045         207 AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  264 (267)
Q Consensus       207 ~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~l~~  264 (267)
                      ......+.+.. ...+|.+...........+..+.|.|.+.|+++  +.|.|++||+.+..
T Consensus       103 ~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  163 (231)
T 2w59_A          103 LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPA  163 (231)
T ss_dssp             SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCC
Confidence            33333332210 123565544322111123567999999998643  68999999998854

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.59  E-value=1e-14  Score=109.96  Aligned_cols=123  Identities=24%  Similarity=0.417  Sum_probs=85.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--------------Ccc------------CC--CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--------------GKP------------VP--DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--------------~~~------------~~--~~~~~~l~i~~~~~~d  192 (267)
                      +....+.+|+++.|.| ..+.+.+.+.|+|.              +..            +.  ......|.|.+++.+|
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   87 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED   87 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence            4455888999999999 66778889999981              110            00  1123489999999999


Q ss_pred             CeEEEEEEEcCC----CCceEEEEEEEec---ccCCCeeec-CCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         193 KGMYQCVIRNEQ----ESAQASGELKLGG---RFDPPVIKE-SFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       193 ~g~y~C~~~~~~----~~~~~~~~l~v~~---~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      +|.|.|.+.+..    ........+.|..   ...+|.+.. .+....+.+|+.+.|.|.+.|. |++ .+.|+++|+.+
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l  167 (245)
T 4ei6_B           88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (245)
T ss_dssp             CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence            999999998532    1222234455543   113555443 3344445679999999999984 444 89999999988


Q ss_pred             CC
Q psy3045         263 VN  264 (267)
Q Consensus       263 ~~  264 (267)
                      ..
T Consensus       168 ~~  169 (245)
T 4ei6_B          168 HS  169 (245)
T ss_dssp             CT
T ss_pred             CC
Confidence            65

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.59  E-value=3e-14  Score=108.24  Aligned_cols=118  Identities=17%  Similarity=0.320  Sum_probs=87.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC------------------------CCCCCCeEEeccCCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV------------------------PDHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~------------------------~~~~~~~l~i~~~~~~d~  193 (267)
                      .+....+.+|++++|.|.+.+.+.+.+.|++..  ...                        .......|.|.++..+|+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            345568899999999999988899999999842  111                        011234699999999999


Q ss_pred             eEEEEEEEcCCCCce----EEEEEEEec-----------------ccCCCeeecCCceeEEecCCcEEEEEEeecCCCCc
Q psy3045         194 GMYQCVIRNEQESAQ----ASGELKLGG-----------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE  252 (267)
Q Consensus       194 g~y~C~~~~~~~~~~----~~~~l~v~~-----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  252 (267)
                      |.|.|.+.+..+...    ....|.|..                 ...+|.+...+....+.+|+.++|.|.+.+. .+.
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~  167 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY  167 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence            999999998754221    133555553                 2246677777888888899999999999877 679


Q ss_pred             EEEEEC
Q psy3045         253 ISWYLD  258 (267)
Q Consensus       253 i~W~~~  258 (267)
                      +.|||.
T Consensus       168 v~W~k~  173 (256)
T 3tf7_C          168 MYWYRQ  173 (256)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999983

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.59  E-value=3.6e-15  Score=118.27  Aligned_cols=120  Identities=17%  Similarity=0.335  Sum_probs=86.8

Q ss_pred             eEEEecCCCEEEEeEeCCC--CCceEEEEEC--CccCC------------------C----------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGN--PVKTISWMKD--GKPVP------------------D----------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~--~~~~~------------------~----------~~~~~l~i~~~~~  190 (267)
                      ...+.+|+.+.|.|.+.+.  +.+.+.|+|+  +..+.                  .          .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS   88 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            3478899999999999876  3678999986  33220                  0          1124799999999


Q ss_pred             CCCeEEEEEEEcCCCCceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CC-CcEEEEECCEEc
Q psy3045         191 EDKGMYQCVIRNEQESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKL  262 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~l  262 (267)
                      +|+|.|.|.+.+..+.......|.|.. ...+|.+...+....+.+|+.+.|.|.+.|. |. +.|.|+++|..+
T Consensus        89 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  163 (344)
T 1za6_B           89 EDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS  163 (344)
T ss_dssp             GGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred             ccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence            999999999998544333445666652 2245555543333346789999999999987 54 699999999763

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=2.5e-14  Score=110.25  Aligned_cols=120  Identities=17%  Similarity=0.359  Sum_probs=87.2

Q ss_pred             ceEEEecCCCEEEEeEeCCCC--CceEEEEECCc--cC-------------------C---------CCCCCeEEeccCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNP--VKTISWMKDGK--PV-------------------P---------DHNEPVFRIDSVR  189 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~--~~-------------------~---------~~~~~~l~i~~~~  189 (267)
                      ....+.+|++++|.|.+.+.+  .+.+.|+|++.  .+                   .         ......|.|.+++
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  113 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT  113 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence            345788999999999998775  57999998541  11                   0         0112579999999


Q ss_pred             CCCCeEEEEEEEcCCCC---ce--EEEEEEEeccc------------CCCeeecCCceeEEecCCcEEEEEEeecCCCCc
Q psy3045         190 KEDKGMYQCVIRNEQES---AQ--ASGELKLGGRF------------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPE  252 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~~---~~--~~~~l~v~~~~------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  252 (267)
                      .+|+|.|.|.+.+..+.   ..  ....+.|....            .++.+...+....+.+|++++|.|.+.+.+ +.
T Consensus       114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~  192 (282)
T 1qok_A          114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY  192 (282)
T ss_dssp             GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC
T ss_pred             hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce
Confidence            99999999999998651   11  22355565321            234555566677889999999999999998 99


Q ss_pred             EEEEE--CCEEc
Q psy3045         253 ISWYL--DGKKL  262 (267)
Q Consensus       253 i~W~~--~~~~l  262 (267)
                      +.|||  +|+.+
T Consensus       193 v~W~k~~~g~~~  204 (282)
T 1qok_A          193 MHWFQQKPGTSP  204 (282)
T ss_dssp             CEEEEECTTSCC
T ss_pred             EEEEEECCCCCc
Confidence            99999  66543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=97.20  Aligned_cols=101  Identities=27%  Similarity=0.408  Sum_probs=78.3

Q ss_pred             ccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       136 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...       ....|.|.++..+|+|.|+|.|.|..|...
T Consensus        10 ~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (118)
T 2eo9_A           10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT   89 (118)
T ss_dssp             CCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEE
T ss_pred             EEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEE
Confidence            3344556668999999999999999999999999999887542       246799999999999999999999999888


Q ss_pred             EEEEEEEecccCCCeeecCCceeEEecCC
Q psy3045         209 ASGELKLGGRFDPPVIKESFSDETLNPGP  237 (267)
Q Consensus       209 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~  237 (267)
                      ....|.|... ..|.+...+.+..+.+|.
T Consensus        90 ~~~~l~V~~~-~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           90 WSAYIEVQEF-GVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             EECCEEEECC-SCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEEEEeC-CCCccCCCCCCCccCCCC
Confidence            7888888753 234444445555555553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.58  E-value=9.8e-15  Score=108.87  Aligned_cols=121  Identities=15%  Similarity=0.325  Sum_probs=81.0

Q ss_pred             ceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVR  189 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~  189 (267)
                      ....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+                   ..         .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            445788999999999998876  6799999854  211                   00         123579999999


Q ss_pred             CCCCeEEEEEEEcCCCC-ceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         190 KEDKGMYQCVIRNEQES-AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~~-~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      .+|+|.|.|.+.+.... ......|.|.. ...+|.+........+.+|+.+.|.|.+.|. |.+ .+.|+++|..+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             cccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            99999999999985321 11223566653 1234555543323356789999999999985 766 99999999764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.58  E-value=2.2e-14  Score=108.53  Aligned_cols=119  Identities=17%  Similarity=0.329  Sum_probs=83.7

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccC----------------C-------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV----------------P-------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~----------------~-------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .+....+.+|+.++|.|.+.+.|.+.+.|+++....                .       ......|.|.++..+|+|.|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTY   89 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEE
Confidence            345567899999999999999998899999853110                0       01123799999999999999


Q ss_pred             EEEEEcCCCCce-EEEEEEEecc----------------cCCCeeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEE
Q psy3045         197 QCVIRNEQESAQ-ASGELKLGGR----------------FDPPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYL  257 (267)
Q Consensus       197 ~C~~~~~~~~~~-~~~~l~v~~~----------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~  257 (267)
                      .|.+.+..+... ....+.|...                ..++.+...+....+.+|+.+.|.|.+.+.+  .+.+.|||
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k  169 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVK  169 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEE
Confidence            999998654321 2334555431                0122333344556788999999999999877  67999999


Q ss_pred             C
Q psy3045         258 D  258 (267)
Q Consensus       258 ~  258 (267)
                      +
T Consensus       170 ~  170 (250)
T 3esu_F          170 Q  170 (250)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.58  E-value=1.6e-14  Score=110.98  Aligned_cols=119  Identities=18%  Similarity=0.312  Sum_probs=83.7

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCcc-----CC----------C--------CCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP-----VP----------D--------HNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~-----~~----------~--------~~~~~l~i~~~~~~d~g~y  196 (267)
                      .+....+.+|++++|.|.+.+.|.+.+.|++++..     +.          .        .....|.|.++..+|+|.|
T Consensus        18 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   97 (276)
T 3auv_A           18 SPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY   97 (276)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEE
Confidence            34556889999999999999988889999986421     00          0        1123799999999999999


Q ss_pred             EEEEEcCCCC-ceEEEEEEEeccc-----------CCCeeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEEC
Q psy3045         197 QCVIRNEQES-AQASGELKLGGRF-----------DPPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  258 (267)
Q Consensus       197 ~C~~~~~~~~-~~~~~~l~v~~~~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  258 (267)
                      .|.+.+..+. ......+.|....           .++.....+....+.+|+.+.|.|.+.+.+  .+.+.|||+
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence            9999987543 2222345554321           112222334566889999999999999877  479999996

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=1.2e-14  Score=109.32  Aligned_cols=123  Identities=20%  Similarity=0.371  Sum_probs=85.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--c-----------------------CC--CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--P-----------------------VP--DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~-----------------------~~--~~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|+++.|.|.+.+ +.+.+.|+|...  .                       +.  ......|.|.+++.+|+
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   87 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   87 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence            44558899999999999875 777999998211  0                       00  11245799999999999


Q ss_pred             eEEEEEEEcCC---CCceEEEEEEEec---ccCCCeeec-CCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEEcCC
Q psy3045         194 GMYQCVIRNEQ---ESAQASGELKLGG---RFDPPVIKE-SFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  264 (267)
Q Consensus       194 g~y~C~~~~~~---~~~~~~~~l~v~~---~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~l~~  264 (267)
                      |.|.|.+.+..   ........+.+..   ...+|.+.. .+....+.+|+.+.|.|.+.| .|.+ .+.|+++|+.+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~  167 (240)
T 3q5y_A           88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  167 (240)
T ss_dssp             EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence            99999998321   1122234455543   224565553 334445567899999999998 5556 7999999998864

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=3e-14  Score=94.29  Aligned_cols=83  Identities=24%  Similarity=0.290  Sum_probs=69.9

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.|.|..+..
T Consensus        10 i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   89 (114)
T 2cqv_A           10 IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR   89 (114)
T ss_dssp             ESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE
T ss_pred             EEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcE
Confidence            3345566689999999999999999999999999998886432         3579999999999999999999999988


Q ss_pred             eEEEEEEEeccc
Q psy3045         208 QASGELKLGGRF  219 (267)
Q Consensus       208 ~~~~~l~v~~~~  219 (267)
                      ...+.|.|....
T Consensus        90 ~~~~~l~V~~~p  101 (114)
T 2cqv_A           90 QAQVNLTVVDKP  101 (114)
T ss_dssp             ECCEEEEEECSC
T ss_pred             EEEEEEEEECCC
Confidence            888888887543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.58  E-value=2.3e-14  Score=109.05  Aligned_cols=119  Identities=14%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC----------------------------CCCCCCeEEeccCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV----------------------------PDHNEPVFRIDSVRK  190 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~----------------------------~~~~~~~l~i~~~~~  190 (267)
                      +....+.+|++++|.|.+.+.+.+.+.|++..  ...                            .......|.|.+++.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   88 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE   88 (259)
T ss_dssp             --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred             CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence            44558899999999999998888899999831  111                            011235699999999


Q ss_pred             CCCeEEEEEEEcCCCC---ceEEEEEEEecccC--------------CCeeecCCceeEEecCCcEEEEEEeecC-CCCc
Q psy3045         191 EDKGMYQCVIRNEQES---AQASGELKLGGRFD--------------PPVIKESFSDETLNPGPNYYFKCIASGN-PTPE  252 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~--------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~  252 (267)
                      +|+|.|.|.+.+..+.   ......|.|.....              +|.+...+....+.+|+++.|.|.+.+. +.+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  168 (259)
T 3omz_A           89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY  168 (259)
T ss_dssp             GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred             ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence            9999999999987652   22234555553211              3566667777889999999999999875 7789


Q ss_pred             EEEEECC
Q psy3045         253 ISWYLDG  259 (267)
Q Consensus       253 i~W~~~~  259 (267)
                      +.|||++
T Consensus       169 v~W~k~~  175 (259)
T 3omz_A          169 IFWYKRL  175 (259)
T ss_dssp             EEEEEEC
T ss_pred             EEEeeeC
Confidence            9999843

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.58  E-value=2.7e-15  Score=111.37  Aligned_cols=117  Identities=21%  Similarity=0.444  Sum_probs=85.4

Q ss_pred             EEecCCCEEEEeEeCCCCC-----ceEEEEECCccC---------------CC----------CCCCeEEeccCCCCCCe
Q psy3045         145 TIDFGRPAQFTCKYEGNPV-----KTISWMKDGKPV---------------PD----------HNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~-----~~~~W~~~~~~~---------------~~----------~~~~~l~i~~~~~~d~g  194 (267)
                      .+.+|+++.|.|.+.+.+.     +.+.|++++...               ..          .....|.|.+++.+|+|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   85 (222)
T 4i0k_A            6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEG   85 (222)
T ss_dssp             CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCS
T ss_pred             EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCE
Confidence            5778999999999887653     789999987543               00          01567999999999999


Q ss_pred             EEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEe-ecCCCCcEEEEE-CCEEcC
Q psy3045         195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYL-DGKKLV  263 (267)
Q Consensus       195 ~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~-~~~~l~  263 (267)
                      .|+|.+.+.. .......+.|.....+|.+...+. ..+.+|+.+.|.|.+ .+.|.+.+.|++ +|..+.
T Consensus        86 ~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~  154 (222)
T 4i0k_A           86 SYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPN-KDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT  154 (222)
T ss_dssp             CEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             EEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCC-ceecCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence            9999999863 334455566655445567666553 367889999999999 789999999999 555443

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.58  E-value=1.5e-14  Score=109.89  Aligned_cols=115  Identities=19%  Similarity=0.371  Sum_probs=84.0

Q ss_pred             EEEecCCCEEEEeEeCCC--CCceEEEEECCc--cCC---------------------------CCCCCeEEeccCCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN--PVKTISWMKDGK--PVP---------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~--~~~---------------------------~~~~~~l~i~~~~~~d  192 (267)
                      ..+.+|++++|.|.+.+.  +.+.+.|++...  ...                           ......|.|.+++.+|
T Consensus        18 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           18 SLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             SEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            368899999999998874  478999998431  100                           0112369999999999


Q ss_pred             CeEEEEEEEcCCCC----ceEEEEEEEecc-----------cCCCeeecCCceeEEecCCcEEEEEEeecCCCC-cEEEE
Q psy3045         193 KGMYQCVIRNEQES----AQASGELKLGGR-----------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWY  256 (267)
Q Consensus       193 ~g~y~C~~~~~~~~----~~~~~~l~v~~~-----------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~  256 (267)
                      +|.|.|.+.+..+.    ......+.|...           ..++.+...+....+.+|++++|.|.+.+.+.+ .+.||
T Consensus        98 sG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~  177 (257)
T 3gkz_A           98 TATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWY  177 (257)
T ss_dssp             CEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEE
T ss_pred             CEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEE
Confidence            99999999986211    122345556542           124666777777889999999999999998887 99999


Q ss_pred             EC
Q psy3045         257 LD  258 (267)
Q Consensus       257 ~~  258 (267)
                      |+
T Consensus       178 k~  179 (257)
T 3gkz_A          178 QQ  179 (257)
T ss_dssp             EE
T ss_pred             EE
Confidence            83

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=6.2e-14  Score=104.45  Aligned_cols=150  Identities=16%  Similarity=0.246  Sum_probs=94.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc--------ccCCceEEEE------eeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA--------VPLNDRVKQV------SGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~--------~~~~~~~~~~------~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++++|.|.+.+       +.|++...+......        .....|+...      ..+|.|.+++.+|+|
T Consensus         9 ~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg   88 (229)
T 1hxm_A            9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG   88 (229)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             CEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCe
Confidence            6789999999999999873       899986443211110        1124555543      248999999999999


Q ss_pred             eEEEEEEcCCC------c--cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEE
Q psy3045          82 KYLCVVNNSVG------G--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQ  153 (267)
Q Consensus        82 ~Y~C~~~~~~~------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~  153 (267)
                      .|+|.+.+..+      .  -...+.|.|.........|...                              +.. ..+.
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~------------------------------~~~-~~~~  137 (229)
T 1hxm_A           89 SYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVF------------------------------VMK-NGTN  137 (229)
T ss_dssp             EEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEE------------------------------EEE-ETTE
T ss_pred             EEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEE------------------------------EcC-CCCe
Confidence            99999987531      1  1123456665422211122211                              111 2358


Q ss_pred             EEeEeCCC-CC-ceEEEEECCccCCCC-------CCCeEEeccCC-CCCCeEEEEEEEcCC
Q psy3045         154 FTCKYEGN-PV-KTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQ  204 (267)
Q Consensus       154 l~C~~~~~-p~-~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~  204 (267)
                      |.|.+.+. |. ..+.|+++ ..+...       ....+.+.... .++.|.|+|.+.|..
T Consensus       138 L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~  197 (229)
T 1hxm_A          138 VACLVKEFYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN  197 (229)
T ss_dssp             EEEEEESCBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             EEEEEEEEeCCCEEEEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCC
Confidence            99999886 54 38999998 665321       22344443333 367889999999976

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.57  E-value=4e-14  Score=100.84  Aligned_cols=146  Identities=16%  Similarity=0.212  Sum_probs=94.3

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      +...|.+|+++.|.|.+..     +.|....+.    ... ...+  .....|.|.+++. | |.|.|.+..........
T Consensus         7 ~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~----~~~-~~~~--~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~   77 (185)
T 1iam_A            7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK----KEL-LLPG--NNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAK   77 (185)
T ss_dssp             SEEEEETTEEEEEEEEECSSSCSEEEEECSSCE----EEE-CSSS--SSEEEEEEEEECS-C-BCCEEEEECSSCEEEEE
T ss_pred             CCcEEeCCCCEEEEEEccCCCCccceEEeeCCC----ccE-eccC--CceeEEEEEecCc-C-CEEEEEEECCCCceEEE
Confidence            5678999999999999975     556431000    000 0111  1224688999973 4 99999997654456777


Q ss_pred             EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CCc--eEEEEECCcc
Q psy3045          98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVK--TISWMKDGKP  174 (267)
Q Consensus        98 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~~~~~~  174 (267)
                      +.|.|..+|..      ..+                      .+....+.+|+.++|.|.+.+. |..  .|+||+++..
T Consensus        78 ~~l~V~~~P~~------v~i----------------------~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~  129 (185)
T 1iam_A           78 TFLTVYWTPER------VEL----------------------APLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE  129 (185)
T ss_dssp             CEEEEEBCCSE------EEE----------------------CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE
T ss_pred             EEEEEeCCCCC------CEE----------------------ccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEE
Confidence            77887764331      111                      1111257889999999999885 543  5899999987


Q ss_pred             CCC------CCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         175 VPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       175 ~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +..      ..+.++++.....+|...|+|.|.+..+
T Consensus       130 l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          130 LKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             cccccCCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            743      1123556554444444499999998875

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.57  E-value=2.9e-14  Score=108.30  Aligned_cols=119  Identities=18%  Similarity=0.379  Sum_probs=87.2

Q ss_pred             cCCceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccCC----------------------------CCCCCeEEec
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPVP----------------------------DHNEPVFRID  186 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~  186 (267)
                      ..+....+.+|++++|.|.+.+.  +.+.+.|++..  ..+.                            ......|.|.
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   90 (256)
T 3juy_B           11 VQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   90 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEEC
Confidence            34556689999999999998874  57799999742  1110                            0112469999


Q ss_pred             cCCCCCCeEEEEEEEcC------------CCCceEEEEEEEecccC------------CCeeecCCceeEEecCCcEEEE
Q psy3045         187 SVRKEDKGMYQCVIRNE------------QESAQASGELKLGGRFD------------PPVIKESFSDETLNPGPNYYFK  242 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~~------------~~~~~~~~~l~v~~~~~------------~p~~~~~~~~~~~~~g~~~~l~  242 (267)
                      +++.+|+|.|.|.+.+.            .........|.|.....            ++.+...+....+.+|++++|.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  170 (256)
T 3juy_B           91 SLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFS  170 (256)
T ss_dssp             SCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEE
T ss_pred             CCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEE
Confidence            99999999999999986            22222344566654211            4566666777889999999999


Q ss_pred             EEeecCCC-CcEEEEE
Q psy3045         243 CIASGNPT-PEISWYL  257 (267)
Q Consensus       243 C~~~~~p~-~~i~W~~  257 (267)
                      |.+.+.+. +.+.|||
T Consensus       171 C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          171 CRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             EEESSCCTTCCEEEEE
T ss_pred             EEECCCcCCeeEEEEE
Confidence            99998876 8999998

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=1e-14  Score=112.20  Aligned_cols=126  Identities=19%  Similarity=0.382  Sum_probs=88.3

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC--------------C----C---------CCCCeEEeccCC
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV--------------P----D---------HNEPVFRIDSVR  189 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~--------------~----~---------~~~~~l~i~~~~  189 (267)
                      ..+....+.+|+++.|.|.+.+.+.+.+.|++++  ...              .    .         .....|.|.+++
T Consensus        29 ~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (279)
T 2wbj_D           29 QHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAH  108 (279)
T ss_dssp             EECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCC
T ss_pred             eCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCC
Confidence            3355668999999999999988888899999864  110              0    0         112379999999


Q ss_pred             CCCCeEEEEEEEcCCC----C--ceEEEEEEEecc---cCCCeeecC-CceeEEecCCcEEEEEEeecC-CC-CcEEEEE
Q psy3045         190 KEDKGMYQCVIRNEQE----S--AQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PT-PEISWYL  257 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~----~--~~~~~~l~v~~~---~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~  257 (267)
                      .+|+|.|.|.+.+..+    .  ......+.|...   ..+|.+... +....+.+|+.+.|.|.+.|. |+ +.|.|++
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  188 (279)
T 2wbj_D          109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  188 (279)
T ss_dssp             GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE
T ss_pred             ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEE
Confidence            9999999999998421    1  112234556532   135655543 333344578999999999987 43 5999999


Q ss_pred             CCEEcCC
Q psy3045         258 DGKKLVN  264 (267)
Q Consensus       258 ~~~~l~~  264 (267)
                      ||+.+..
T Consensus       189 ~g~~l~~  195 (279)
T 2wbj_D          189 NGKEVHS  195 (279)
T ss_dssp             TTEECCT
T ss_pred             CCEECCC
Confidence            9998864

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.57  E-value=8.2e-15  Score=109.37  Aligned_cols=119  Identities=18%  Similarity=0.363  Sum_probs=82.8

Q ss_pred             EEEecCCCEEEEeEeCCCCC----ceEEEEECC--ccCC---------------------------CCCCCeEEeccCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNPV----KTISWMKDG--KPVP---------------------------DHNEPVFRIDSVRK  190 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~----~~~~W~~~~--~~~~---------------------------~~~~~~l~i~~~~~  190 (267)
                      ..+.+|++++|.|.+.+.+.    +.+.|+|+.  ..+.                           ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (228)
T 3bae_H           10 GLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDT   89 (228)
T ss_dssp             SEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCc
Confidence            37889999999999988764    889999852  2210                           00125799999999


Q ss_pred             CCCeEEEEEEEcCCC------C---ceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEEC
Q psy3045         191 EDKGMYQCVIRNEQE------S---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLD  258 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~------~---~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~  258 (267)
                      +|+|.|.|.+.+..+      .   ......|.|.. ...+|.+........+.+|+.+.|.|.+.|. |.| .+.|+++
T Consensus        90 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~  169 (228)
T 3bae_H           90 ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  169 (228)
T ss_dssp             GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeC
Confidence            999999999998654      1   11224566653 2235665543333346789999999999986 777 9999999


Q ss_pred             CEEc
Q psy3045         259 GKKL  262 (267)
Q Consensus       259 ~~~l  262 (267)
                      |..+
T Consensus       170 ~~~~  173 (228)
T 3bae_H          170 SLSS  173 (228)
T ss_dssp             TCCT
T ss_pred             Cccc
Confidence            8753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.57  E-value=2.8e-14  Score=108.39  Aligned_cols=115  Identities=17%  Similarity=0.325  Sum_probs=85.2

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC----------------------------CCCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                            ......|.|.++..+
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (256)
T 3umt_A           12 ELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE   91 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc
Confidence            4688999999999998865  6799999843  1110                            011234999999999


Q ss_pred             CCeEEEEEEEcC----CCCceEEEEEEEecc------------c-CCCeeecCCceeEEecCCcEEEEEEeecCCCCcEE
Q psy3045         192 DKGMYQCVIRNE----QESAQASGELKLGGR------------F-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS  254 (267)
Q Consensus       192 d~g~y~C~~~~~----~~~~~~~~~l~v~~~------------~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  254 (267)
                      |+|.|.|.+.+.    .........|.|...            . .+|.+...+....+.+|+.++|.|.+.+.|.+.+.
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~  171 (256)
T 3umt_A           92 DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLN  171 (256)
T ss_dssp             GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEE
T ss_pred             cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEE
Confidence            999999999987    222223445656531            0 15667777777889999999999999999888999


Q ss_pred             EEEC
Q psy3045         255 WYLD  258 (267)
Q Consensus       255 W~~~  258 (267)
                      |||+
T Consensus       172 W~k~  175 (256)
T 3umt_A          172 WLQQ  175 (256)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9984

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.57  E-value=4e-14  Score=106.90  Aligned_cols=118  Identities=18%  Similarity=0.338  Sum_probs=82.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-----CceEEEEECC--ccCC-------------C--------CCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDG--KPVP-------------D--------HNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~--~~~~-------------~--------~~~~~l~i~~~~~~d  192 (267)
                      +....+.+|++++|.|.+.+.+     .+.+.|++++  ..+.             .        .....|.|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            4455889999999999998887     6899999853  2110             0        112479999999999


Q ss_pred             CeEEEEEEEcCCCC-ceEEEEEEEecccC----------CCeeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEEC
Q psy3045         193 KGMYQCVIRNEQES-AQASGELKLGGRFD----------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  258 (267)
Q Consensus       193 ~g~y~C~~~~~~~~-~~~~~~l~v~~~~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  258 (267)
                      +|.|.|.+.+..+. ......|.|.....          ++.....+....+.+|+.++|.|.+.+.+  .+.+.|||+
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            99999999987543 11234556653211          22222233334688999999999999875  469999996

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.57  E-value=1e-14  Score=108.57  Aligned_cols=119  Identities=13%  Similarity=0.298  Sum_probs=84.1

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                   ..         .....|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (225)
T 1op3_H           10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (225)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            4788999999999998776  6789999853  211                   00         11247999999999


Q ss_pred             CCeEEEEEEEcCCC-----C---ceEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCE
Q psy3045         192 DKGMYQCVIRNEQE-----S---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGK  260 (267)
Q Consensus       192 d~g~y~C~~~~~~~-----~---~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~  260 (267)
                      |+|.|.|.+.+..+     .   ......|.|... ..+|.+........+.+|+.+.|.|.+.|. |.| .|.|+++|.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  169 (225)
T 1op3_H           90 DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  169 (225)
T ss_dssp             GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSC
T ss_pred             hCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCC
Confidence            99999999998754     1   112345666531 234555432222235689999999999986 766 999999997


Q ss_pred             Ec
Q psy3045         261 KL  262 (267)
Q Consensus       261 ~l  262 (267)
                      .+
T Consensus       170 ~~  171 (225)
T 1op3_H          170 TS  171 (225)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.57  E-value=3.5e-14  Score=106.91  Aligned_cols=118  Identities=17%  Similarity=0.309  Sum_probs=82.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC--------------C-------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV--------------P-------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~--------------~-------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      +....+.+|++++|.|.+.+.|.+.+.|+++.  ..+              .       ......|.|.++..+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            44558899999999999999888899999853  111              0       012347999999999999999


Q ss_pred             EEEEcCCCCc-eEEEEEEEecccC----------CCeeecCCceeEEecCCcEEEEEEeecCC--CCcEEEEEC
Q psy3045         198 CVIRNEQESA-QASGELKLGGRFD----------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  258 (267)
Q Consensus       198 C~~~~~~~~~-~~~~~l~v~~~~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  258 (267)
                      |.+.+..+.. .....|.|.....          ++.....+....+.+|++++|.|.+.+.|  .+.+.|+|+
T Consensus        88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            9999875321 1233455543111          11122222334688999999999999876  478999984

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.56  E-value=1.1e-14  Score=107.63  Aligned_cols=119  Identities=15%  Similarity=0.366  Sum_probs=84.4

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC---------------------------CCCCCeEEeccCCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP---------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~---------------------------~~~~~~l~i~~~~~~d  192 (267)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+.                           ......|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            3788999999999998764  5789999853  2110                           0012379999999999


Q ss_pred             CeEEEEEEEcCCCC---ceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         193 KGMYQCVIRNEQES---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       193 ~g~y~C~~~~~~~~---~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      +|.|.|.+.+..+.   ......|.|.. ...+|.+...+....+.+|+.+.|.|.+.|. |.| .+.|+++|..+
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           90 TAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             CEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             CEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999986421   12234566652 2234655543323345789999999999986 777 99999998754

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=2.2e-14  Score=95.38  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=74.1

Q ss_pred             CCcccccCCceEEEecCCCEEEEeEeCCC---CCceEEEEECCc---------cCCCC---------CCCeEEeccCCCC
Q psy3045         133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDGK---------PVPDH---------NEPVFRIDSVRKE  191 (267)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~---------~~~~~---------~~~~l~i~~~~~~  191 (267)
                      +...+...+....+.+|++++|.|.+.+.   |.|.|.|||+..         .+...         ....|.|.++...
T Consensus         6 ~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             cccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence            34445566777799999999999998764   789999999742         11100         1367999999999


Q ss_pred             CCeEEEEEEEcCCCCceEEEEEEEec-ccCCCeeecCC
Q psy3045         192 DKGMYQCVIRNEQESAQASGELKLGG-RFDPPVIKESF  228 (267)
Q Consensus       192 d~g~y~C~~~~~~~~~~~~~~l~v~~-~~~~p~~~~~~  228 (267)
                      |+|.|+|+|.|..+..+.++.|.|.+ ....|.+.+.|
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~i~~  123 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGP  123 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEECCCCSCCCCCCSC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEEecc
Confidence            99999999999999888899999986 44456665554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=3.7e-14  Score=106.54  Aligned_cols=123  Identities=17%  Similarity=0.386  Sum_probs=86.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cC-----------------C--------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PV-----------------P--------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~-----------------~--------~~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|+++.|.|.+. .+.+.+.|+|++.  .+                 .        ......|.|.+++.+|+
T Consensus         6 p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            4455889999999999985 4578999998641  10                 0        01224799999999999


Q ss_pred             eEEEEEEEcCCC---C--ceEEEEEEEecc---cCCCeeecC-CceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         194 GMYQCVIRNEQE---S--AQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       194 g~y~C~~~~~~~---~--~~~~~~l~v~~~---~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      |.|.|.+.+..+   .  ......|.|...   ..+|.+... +....+.+|+.+.|.|.+.|. |.+ .+.|++||+.+
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~  164 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  164 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence            999999998642   1  112234556532   135665543 333445679999999999986 655 99999999987


Q ss_pred             CC
Q psy3045         263 VN  264 (267)
Q Consensus       263 ~~  264 (267)
                      ..
T Consensus       165 ~~  166 (238)
T 1bec_A          165 HS  166 (238)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=5.6e-14  Score=92.99  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=72.2

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDS   80 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~   80 (267)
                      +..||.|...+  ..+.+.+|+++.|.|.+.+     +.|++++...      ....++...    ...|.|.+++.+|+
T Consensus         4 ~~~pp~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~   75 (114)
T 2cqv_A            4 GSSGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI------QESEHMKVENSENGSKLTILAARQEHC   75 (114)
T ss_dssp             CCCCCEESCCC--CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBC------CCSSSEEEEECSSEEEEEETTCCTTTC
T ss_pred             CCCCCEEEeCC--CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEEC------cCCCCEEEEEcCCEEEEEECCCChhcC
Confidence            34579998877  7899999999999999988     9999964322      122233333    56899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.|+|.+.|..|.....+.|.|...+.
T Consensus        76 G~Y~C~a~N~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           76 GCYTLLVENKLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             EEEEEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEEEEEECCCcEEEEEEEEEECCCC
Confidence            999999999999888888888887554

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.56  E-value=6.2e-16  Score=116.00  Aligned_cols=167  Identities=16%  Similarity=0.256  Sum_probs=93.1

Q ss_pred             CCcccCCCCceeEE-ecCCCeEEEEEEecc---------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCC
Q psy3045          13 APTFSSVSDIIRFK-KPGGESFALLCEAQE---------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        13 ~P~~~~~~~~~~~~-v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      +|.+.+.+. .... +..|+++.|.|.+.+         +.|++++........   ....+......+.|.|......|
T Consensus        22 ~P~v~i~~p-s~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d  100 (240)
T 4acp_A           22 GPSVFLFPP-KPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN  100 (240)
T ss_dssp             -CEEEEECC-CHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHH
T ss_pred             CCEEEEECc-ChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccC
Confidence            454444432 3334 567999999999885         789997432211110   01112222334578888888888


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE  159 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  159 (267)
                      .|.|+|.+.+..+.......+...  ......+....                      ..+. .....|+.+.|.|.+.
T Consensus       101 ~~~YtC~v~h~~~~~~~~~~i~~~--~~~~~~P~V~v----------------------~~~~-~~~~~g~~~~L~C~~~  155 (240)
T 4acp_A          101 GKEYKCKVSNKALPAPIEKTISKA--KGQPREPQVYT----------------------LPPS-RDELTKNQVSLTCLVK  155 (240)
T ss_dssp             TCCEEEEEECC----CEEEEECCC--CSCCBCCEEEE----------------------ECCC-GGGGGSSEEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCcccccccccc--CCCCCCCEEEE----------------------ECCC-hHHhcCCceEEEEEEe
Confidence            999999999977543222222110  00111111110                      0000 0122378899999999


Q ss_pred             CC-CC-ceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         160 GN-PV-KTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       160 ~~-p~-~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ++ |. ..+.|+++|..+...        .+      +.|.+.....++.|.|+|.|.|..-
T Consensus       156 gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            85 54 489999999876421        11      2344444444578999999999764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.56  E-value=2.2e-14  Score=106.68  Aligned_cols=120  Identities=18%  Similarity=0.375  Sum_probs=84.2

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+|+.  ..+                   ..         .....|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           10 GVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            3788999999999988765  4789999853  111                   00         01247999999999


Q ss_pred             CCeEEEEEEEcCCC---C---ceEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEE-CCEE
Q psy3045         192 DKGMYQCVIRNEQE---S---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYL-DGKK  261 (267)
Q Consensus       192 d~g~y~C~~~~~~~---~---~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~-~~~~  261 (267)
                      |+|.|.|.+.+..+   .   ......|.|.. ...+|.+........+.+|+.+.|.|.+.|. |.| .+.|++ +|+.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSD  169 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCB
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCc
Confidence            99999999998652   1   11223566652 2235555532222245689999999999987 777 999999 9987


Q ss_pred             cC
Q psy3045         262 LV  263 (267)
Q Consensus       262 l~  263 (267)
                      +.
T Consensus       170 l~  171 (223)
T 1dee_B          170 IS  171 (223)
T ss_dssp             CS
T ss_pred             cc
Confidence            74

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.56  E-value=1.3e-14  Score=107.72  Aligned_cols=119  Identities=16%  Similarity=0.382  Sum_probs=85.4

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEECC--cc---C------------------CC---------CCCCeEEeccC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KP---V------------------PD---------HNEPVFRIDSV  188 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~---~------------------~~---------~~~~~l~i~~~  188 (267)
                      ...+.+|+++.|.|.+.+.+  .+.+.|+|++  ..   +                  ..         .....|.|.++
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            34788999999999998766  6799999853  11   0                  00         01237999999


Q ss_pred             CCCCCeEEEEEEEcCCCCc-e--EEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEE
Q psy3045         189 RKEDKGMYQCVIRNEQESA-Q--ASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  261 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~~~-~--~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~  261 (267)
                      +.+|+|.|.|.+.+..+.. .  ....+.|.. ...+|.+...+....+.+|+.+.|.|.+.|. |.| .+.|+++|..
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  167 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS  167 (220)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence            9999999999999875321 1  234555653 1245665544433346789999999999987 888 9999998863

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.56  E-value=3.6e-16  Score=115.62  Aligned_cols=157  Identities=15%  Similarity=0.265  Sum_probs=93.0

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceecc--c-cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVA--V-PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~--~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ....+.+|++++|.|.+.+        +.| ++.........  . ....++ .....|.|.++...|+|.|+|.+.+..
T Consensus        12 ~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~g~Y~C~~~~~~   89 (214)
T 1ow0_A           12 ALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTAAYPE   89 (214)
T ss_dssp             CHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCC-CEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             ChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcE-EEEEEEEEeHHHcCCCCeEEEEEecCC
Confidence            5667899999999999865        789 53222111000  0 111222 245678999999999999999999876


Q ss_pred             CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CC-ceEEEE
Q psy3045          92 GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PV-KTISWM  169 (267)
Q Consensus        92 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~  169 (267)
                      +.......+.+   ......+....                      ..+....+..|+.+.|.|.+.|. |. +.+.|+
T Consensus        90 ~~~~~~~~i~~---~~~~~~P~v~~----------------------~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  144 (214)
T 1ow0_A           90 SKTPLTATLSK---SGNTFRPEVHL----------------------LPPPSEELALNELVTLTCLARGFSPKDVLVRWL  144 (214)
T ss_dssp             CSSCEEEEEEC---CSSCCCCEEEE----------------------ECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEE
T ss_pred             CCCceeEeecc---CCCCCCCEEEe----------------------cCCCHHHhccCCceEEEEEEeeeECCCcEEEEE
Confidence            64332223321   01111111110                      00111124568889999999985 53 599999


Q ss_pred             ECCccCCCC-------------CCCeEE------eccCCCCCCeEEEEEEEcCCCC
Q psy3045         170 KDGKPVPDH-------------NEPVFR------IDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       170 ~~~~~~~~~-------------~~~~l~------i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +||..+...             ...++.      +.....++.|.|+|.|.|....
T Consensus       145 k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          145 QGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             ETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            999876432             122222      2222223478999999997643

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.56  E-value=3.1e-14  Score=93.29  Aligned_cols=77  Identities=29%  Similarity=0.530  Sum_probs=59.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|.++..+|+|.|+|.|.|..|.......+
T Consensus        17 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   96 (108)
T 3kvq_A           17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF   96 (108)
T ss_dssp             CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEE
T ss_pred             CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEE
Confidence            34458889999999999999999999999999887543       35789999999999999999999999998888888


Q ss_pred             EEec
Q psy3045         214 KLGG  217 (267)
Q Consensus       214 ~v~~  217 (267)
                      .|..
T Consensus        97 ~V~~  100 (108)
T 3kvq_A           97 IIEG  100 (108)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8874

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.55  E-value=3.4e-14  Score=107.68  Aligned_cols=118  Identities=17%  Similarity=0.295  Sum_probs=85.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------C---------CCCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------P---------DHNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~---------~~~~~~l~i~~~  188 (267)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+                   .         ......|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            3445788999999999998854  6799999821  110                   0         011234999999


Q ss_pred             CCCCCeEEEEEEEcCCCCc-eEEEEEEEec------------ccCCCeeecCCceeEEecCCcEEEEEEeecCCCC----
Q psy3045         189 RKEDKGMYQCVIRNEQESA-QASGELKLGG------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP----  251 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----  251 (267)
                      +.+|+|.|.|.+.+..+.. .....+.|..            ...+|.+...+....+.+|+++.|.|.+.+.+.+    
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  167 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNS  167 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCc
Confidence            9999999999999865443 2344555552            1135666777777889999999999999998877    


Q ss_pred             cEEEEEC
Q psy3045         252 EISWYLD  258 (267)
Q Consensus       252 ~i~W~~~  258 (267)
                      .+.|||+
T Consensus       168 ~v~W~r~  174 (253)
T 3uzq_A          168 FMHWYQQ  174 (253)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            9999984

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.55  E-value=2.3e-14  Score=91.26  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=63.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++  ..+...       ....|.|.++..+|+|.|+|.|.|..|....++
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF   88 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEE
Confidence            44568899999999999999999999999999  776433       235799999999999999999999999877777


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .|.|
T Consensus        89 ~l~V   92 (93)
T 1wit_A           89 EVIV   92 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.55  E-value=2.4e-14  Score=106.27  Aligned_cols=118  Identities=18%  Similarity=0.317  Sum_probs=84.7

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------------------CC---------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------------------~~---------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                   ..         .....|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence            4788999999999998765  5789999853  110                   00         11247999999999


Q ss_pred             CCeEEEEEEEcCCCC---ceEEEEEEEecc-cCCCeeecCCceeEEecCCcEEEEEEeecC-CC--CcEEEEECCEEc
Q psy3045         192 DKGMYQCVIRNEQES---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT--PEISWYLDGKKL  262 (267)
Q Consensus       192 d~g~y~C~~~~~~~~---~~~~~~l~v~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~~~~~l  262 (267)
                      |+|.|.|.+.+..+.   ......|.|... ..+|.+...+ ...+.+|+.+.|.|.+.+. |.  +.+.|+++|..+
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H           90 DTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             GCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             hCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            999999999986532   112345666531 2356665544 3345789999999999986 76  699999999764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=7.6e-14  Score=91.74  Aligned_cols=82  Identities=27%  Similarity=0.449  Sum_probs=68.4

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++..+|+|.|+|.|.|..+
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   90 (110)
T 2dm2_A           11 FEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQG   90 (110)
T ss_dssp             BSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTC
T ss_pred             EEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCC
Confidence            3344556689999999999999999999999999998876421           12699999999999999999999999


Q ss_pred             CceEEEEEEEecc
Q psy3045         206 SAQASGELKLGGR  218 (267)
Q Consensus       206 ~~~~~~~l~v~~~  218 (267)
                      .......|.|...
T Consensus        91 ~~~~~~~l~V~~~  103 (110)
T 2dm2_A           91 RISCTGRLMVQAV  103 (110)
T ss_dssp             CEEECCCEEEECC
T ss_pred             eEEEEEEEEEECC
Confidence            8887788888653

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.54  E-value=8.1e-15  Score=107.73  Aligned_cols=118  Identities=18%  Similarity=0.331  Sum_probs=77.2

Q ss_pred             ecCCCEEEEeEeCCCC----CceEEEEECCccCCCC--------CCCeEEec---cCCC---CCCeEEEEEEEcCCCCce
Q psy3045         147 DFGRPAQFTCKYEGNP----VKTISWMKDGKPVPDH--------NEPVFRID---SVRK---EDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~p----~~~~~W~~~~~~~~~~--------~~~~l~i~---~~~~---~d~g~y~C~~~~~~~~~~  208 (267)
                      ..|+.+.|.|.+.+.+    .+.+.|++++..+...        ....+.+.   .+..   +|+|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6799999999998865    3499999999765422        12233332   1333   349999999999877643


Q ss_pred             EEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcCC
Q psy3045         209 ASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  264 (267)
Q Consensus       209 ~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~~  264 (267)
                      ....+.+. ....+|.+...+.......|..+.|.|.+.|. |++ .|.|++||+.+..
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  154 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  154 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccC
Confidence            33333220 12346666554332222356679999999985 443 8999999998753

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.54  E-value=5e-14  Score=89.23  Aligned_cols=76  Identities=25%  Similarity=0.530  Sum_probs=64.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKL  215 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v  215 (267)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......|.|.++..+|+|.|+|.|.|..+... ....+.|
T Consensus         9 ~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A            9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             CCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEE
Confidence            344557889999999999999999999999999998888888999999999999999999999987543 2344544

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.53  E-value=2.8e-14  Score=108.59  Aligned_cols=121  Identities=16%  Similarity=0.322  Sum_probs=84.0

Q ss_pred             ceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC------------------C----------CCCCeEEeccCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP------------------D----------HNEPVFRIDSVR  189 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~------------------~----------~~~~~l~i~~~~  189 (267)
                      ....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                  .          .....|.|.+++
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   93 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT   93 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence            445788999999999998776  6789999863  2110                  0          012479999999


Q ss_pred             CCCCeEEEEEEEcCCCCc---eEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEc
Q psy3045         190 KEDKGMYQCVIRNEQESA---QASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  262 (267)
Q Consensus       190 ~~d~g~y~C~~~~~~~~~---~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l  262 (267)
                      .+|+|.|.|.+.+..+..   .....|.|.. ...+|.+........+.+|+.+.|.|.+.+. |.+ .|.|+++|..+
T Consensus        94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            999999999999864211   1223566653 1234555543322346789999999999985 766 99999998765

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=5.2e-14  Score=93.59  Aligned_cols=90  Identities=19%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcce---eccccCCceE----EEEeeEEEEeeccc
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSR---KVAVPLNDRV----KQVSGTLIIKEAKV   77 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~---~~~~~~~~~~----~~~~~~l~i~~~~~   77 (267)
                      .|.|...|  .++.+.+|++++|.|.+.+        |.|+|+..-...   ...+.+...+    .....+|+|.+++.
T Consensus         7 ~~~F~~~P--~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   84 (126)
T 2dav_A            7 GILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD   84 (126)
T ss_dssp             SCSCCSCC--CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred             ccEEEEcC--CCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc
Confidence            47888888  8999999999999999853        999995210000   0001111011    11257899999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      .|+|.|+|.+.|..+..+..+.|+|..
T Consensus        85 ~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           85 NFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             TSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             ccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999998899999999987

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=3.1e-14  Score=107.91  Aligned_cols=123  Identities=17%  Similarity=0.378  Sum_probs=83.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccC------------------------C-CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPV------------------------P-DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~------------------------~-~~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|++++|.|.+.+.+.+.+.|+|..  ...                        . ..... |.|.+++.+|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~Ds   86 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQG   86 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSC
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhC
Confidence            34558889999999999888888899999821  110                        0 00112 99999999999


Q ss_pred             eEEEEEEEcCCC---C---ceEEEEEEEec---ccCCCeeecC-CceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEE
Q psy3045         194 GMYQCVIRNEQE---S---AQASGELKLGG---RFDPPVIKES-FSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKK  261 (267)
Q Consensus       194 g~y~C~~~~~~~---~---~~~~~~l~v~~---~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~  261 (267)
                      |.|.|.+.+..+   .   ......+.+..   ...+|.+... +....+..|+.+.|.|.+.| .|++ .+.|+++|+.
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  166 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE
Confidence            999999986543   1   11123455542   1234554432 22223345789999999998 5666 8999999998


Q ss_pred             cCC
Q psy3045         262 LVN  264 (267)
Q Consensus       262 l~~  264 (267)
                      +..
T Consensus       167 l~~  169 (253)
T 3to4_D          167 VHS  169 (253)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            864

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.8e-14  Score=93.22  Aligned_cols=91  Identities=18%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcce---eccccC----CceEEEEeeEEEEeeccc
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSR---KVAVPL----NDRVKQVSGTLIIKEAKV   77 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~---~~~~~~----~~~~~~~~~~l~i~~~~~   77 (267)
                      ++.|...|  .++.+.+|++++|.|.+.+        |.|+|+......   ...+.+    .........+|+|.+++.
T Consensus        12 ~~~f~~~P--~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   89 (118)
T 2edn_A           12 TGVFLKKP--DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL   89 (118)
T ss_dssp             SSSCSBCC--CCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred             cceEEECC--CCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh
Confidence            45777777  8999999999999999853        999996211100   000111    111112357899999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEec
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      .|+|.|+|.+.|..|..+..+.|.|..+
T Consensus        90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           90 GDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999999999988763

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.52  E-value=1.3e-13  Score=104.41  Aligned_cols=124  Identities=17%  Similarity=0.378  Sum_probs=86.1

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCc--c-----------------CC--------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--P-----------------VP--------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~-----------------~~--------~~~~~~l~i~~~~~~d  192 (267)
                      .+....+.+|+++.|.|.+. .+.+.+.|+++..  .                 ..        ......|.|.+++.+|
T Consensus         9 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   87 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   87 (252)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence            34556889999999999985 4577999998531  1                 00        0123579999999999


Q ss_pred             CeEEEEEEEcCC---CCceEEEEEEEecc---cCCCeeecC-CceeEEecCCcEEEEEEeecC-CCC-cEEEEECCEEcC
Q psy3045         193 KGMYQCVIRNEQ---ESAQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  263 (267)
Q Consensus       193 ~g~y~C~~~~~~---~~~~~~~~l~v~~~---~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~l~  263 (267)
                      +|.|.|.+.+..   ........+.|...   ..+|.+... +....+.+|+.+.|.|.+.|. |.+ .+.|++||+.+.
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            999999999862   11112234555431   246666543 333345578999999999985 654 999999999876


Q ss_pred             C
Q psy3045         264 N  264 (267)
Q Consensus       264 ~  264 (267)
                      .
T Consensus       168 ~  168 (252)
T 1oga_E          168 S  168 (252)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.52  E-value=1.4e-13  Score=101.85  Aligned_cols=118  Identities=17%  Similarity=0.340  Sum_probs=82.9

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCc---eEEEEECCccCC--------------------------------CCCCCeEEec
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVK---TISWMKDGKPVP--------------------------------DHNEPVFRID  186 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~---~~~W~~~~~~~~--------------------------------~~~~~~l~i~  186 (267)
                      ....+..|++++|.|.+.+.+.+   .+.|+|++..+.                                .....+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            34578889999999999887654   489999764321                                0123579999


Q ss_pred             cCCCCCCeEEEEEEEcCCCCceEEE-EEEEecccCCCeeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEc
Q psy3045         187 SVRKEDKGMYQCVIRNEQESAQASG-ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL  262 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~~~~~~~~~~-~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l  262 (267)
                      +++.+|+|.|.|.+.+..+...... .+.+.   .+|.....+.......++...+.|.+. +.|++.+.|++++..+
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~  163 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVI---AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE  163 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEE---BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeee---cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence            9999999999999998766544433 23332   345444444444556677777777664 6788899999987654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=104.79  Aligned_cols=116  Identities=20%  Similarity=0.345  Sum_probs=80.9

Q ss_pred             ceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccCC------------C---------CCCCeEEeccCCCCCCeEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPVP------------D---------HNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~~------------~---------~~~~~l~i~~~~~~d~g~y  196 (267)
                      ....+.+|++++|.|.+.+.  +.+.+.|+|+.  ....            .         .....|.|.+++.+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            34588999999999999876  77899999853  1110            0         0123699999999999999


Q ss_pred             EEEEEcCCCCc---eEEEEEEEecccC------------------CCeeecCCceeEEecCCcEEEEEEeecCC--CCcE
Q psy3045         197 QCVIRNEQESA---QASGELKLGGRFD------------------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEI  253 (267)
Q Consensus       197 ~C~~~~~~~~~---~~~~~l~v~~~~~------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i  253 (267)
                      .|.+.+..+..   .....|.|.....                  ++.+... ....+.+|+.++|.|.+.+.+  .+.+
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v  168 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES-GGGLVQPGGSLRLSCAASGFTFSSYAM  168 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEE-CCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC-CCeEEcCCCeEEEEEEEeCCcccccEE
Confidence            99999865321   1234555543211                  1133333 334588999999999999877  6799


Q ss_pred             EEEEC
Q psy3045         254 SWYLD  258 (267)
Q Consensus       254 ~W~~~  258 (267)
                      .|||+
T Consensus       169 ~W~r~  173 (256)
T 3ux9_B          169 SWVRQ  173 (256)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=5.3e-14  Score=90.59  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..|....+
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   91 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEE
Confidence            445588999999999999999999999999998876432          2369999999999999999999999888877


Q ss_pred             EEEEEe
Q psy3045         211 GELKLG  216 (267)
Q Consensus       211 ~~l~v~  216 (267)
                      ..|.|.
T Consensus        92 ~~l~V~   97 (99)
T 1g1c_A           92 AFLLVQ   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.52  E-value=5.6e-14  Score=89.40  Aligned_cols=87  Identities=22%  Similarity=0.237  Sum_probs=65.5

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+|.|...+  ....+.+|+.+.|.|.+.+     +.|++++.+......  ...........|.|.++..+|+|.|+|.
T Consensus         1 ~~P~i~~~~--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCCEECCCC--CEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCCeEEcCC--CceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEE
Confidence            368887766  7899999999999999998     999996411221111  1111112346799999999999999999


Q ss_pred             EEcCCCccEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTV  102 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V  102 (267)
                      |.|..|..+..+.|.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEE
Confidence            9999998877777766

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.51  E-value=1.6e-13  Score=104.64  Aligned_cols=117  Identities=20%  Similarity=0.315  Sum_probs=82.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCC------CceEEEEECC--ccCC-------------C--------CCCCeEEeccCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP------VKTISWMKDG--KPVP-------------D--------HNEPVFRIDSVRKE  191 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p------~~~~~W~~~~--~~~~-------------~--------~~~~~l~i~~~~~~  191 (267)
                      +....+.+|++++|.|.+.+.+      .+.+.|+++.  ..+.             .        .....|.|.++..+
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            4556889999999999998887      6799999852  2210             0        11247999999999


Q ss_pred             CCeEEEEEEEcCCCC-ceEEEEEEEecccC---------------CC--eeecCCceeEEecCCcEEEEEEeecCCC--C
Q psy3045         192 DKGMYQCVIRNEQES-AQASGELKLGGRFD---------------PP--VIKESFSDETLNPGPNYYFKCIASGNPT--P  251 (267)
Q Consensus       192 d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~---------------~p--~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~  251 (267)
                      |+|.|.|.+.+..+. ......|.|.....               +|  .+...+ ...+.+|++++|.|.+.+.+.  +
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C~~~~~~~~~~  170 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSG-PEVVKTGASVKISCKASGYSFTGY  170 (264)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECC-CEEECTTCCEEEEEEEESSCGGGS
T ss_pred             HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCC-CEEEcCCCcEEEEEEEeCCccCCe
Confidence            999999999986532 11234556653210               12  222223 347889999999999998874  7


Q ss_pred             cEEEEEC
Q psy3045         252 EISWYLD  258 (267)
Q Consensus       252 ~i~W~~~  258 (267)
                      .+.|||+
T Consensus       171 ~v~W~r~  177 (264)
T 2gjj_A          171 FINWVKK  177 (264)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999986

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=7.3e-14  Score=90.12  Aligned_cols=76  Identities=29%  Similarity=0.502  Sum_probs=64.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC----------CeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----------PVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~----------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....          ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT   91 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence            4455888999999999999999999999999987754321          379999999999999999999999888777


Q ss_pred             EEEEEe
Q psy3045         211 GELKLG  216 (267)
Q Consensus       211 ~~l~v~  216 (267)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (100)
T 2kdg_A           92 VQLDVL   97 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777775

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=7.8e-14  Score=92.56  Aligned_cols=91  Identities=29%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE-----eeEEEEeecccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV-----SGTLIIKEAKVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d   79 (267)
                      ...+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++.....     ...++...     ..+|.|.+++.+|
T Consensus        12 ~~~~p~f~~~p--~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D   84 (116)
T 2kkq_A           12 HKRAPMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF-----NTDRISLYQDNTGRVTLLIKDVNKKD   84 (116)
T ss_dssp             CCBCCCBSSCC--CCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCC-----CBTTEEEEECTTCEEEEEEEEECGGG
T ss_pred             CCCCCeEEeCC--CcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcC-----CCCeEEEEeCCCCeEEEEECCCCccc
Confidence            45679999888  7899999999999999987     999996322110     12233221     2289999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      +|.|+|.+.|..|.....+.|.|...+.
T Consensus        85 ~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           85 AGWYTVSAVNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCSC
T ss_pred             CEEEEEEEEcCCCeEEEEEEEEEeCCCC
Confidence            9999999999999888888898887654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.51  E-value=1e-13  Score=103.63  Aligned_cols=120  Identities=17%  Similarity=0.297  Sum_probs=79.1

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------------------CC---------CCCCeEEeccCCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------------------PD---------HNEPVFRIDSVRKED  192 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------------------~~---------~~~~~l~i~~~~~~d  192 (267)
                      ..+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..         .....|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            3788899999999988764  5789999853  211                  00         012379999999999


Q ss_pred             CeEEEEEEEcCCC--C----ceEEEEEEEec-ccCCCeeecCCceeEEecC-CcEEEEEEeecC-CCC-cEEEEE-CCEE
Q psy3045         193 KGMYQCVIRNEQE--S----AQASGELKLGG-RFDPPVIKESFSDETLNPG-PNYYFKCIASGN-PTP-EISWYL-DGKK  261 (267)
Q Consensus       193 ~g~y~C~~~~~~~--~----~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~i~W~~-~~~~  261 (267)
                      +|.|.|.+.+..+  .    ......|.|.. ...+|.+........+..| +.+.|.|.+.+. |.+ .+.|++ ||+.
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD  169 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCc
Confidence            9999999984221  1    11234566654 2234655532222234578 999999999986 776 999999 9987


Q ss_pred             cC
Q psy3045         262 LV  263 (267)
Q Consensus       262 l~  263 (267)
                      +.
T Consensus       170 l~  171 (232)
T 1dn0_B          170 IS  171 (232)
T ss_dssp             EC
T ss_pred             ee
Confidence            64

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.51  E-value=1e-13  Score=88.57  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=68.4

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..||.|...+  ....+.+|+++.|.|.+.+    +.|++++..      +....++...+..|.|.+++.+|+|.|+|.
T Consensus         7 ~~pp~~~~~~--~~~~v~~G~~v~l~C~~~g~pp~i~W~k~g~~------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            7 AQPWGVPVEV--ESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQ------LVESNRTRITGEEVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             SCSCCBTTBB--CCEEECTTSCEEEECCEESSCCEEEEEBTTBC------CCCCSSEEECSSEEEESSCCGGGSEEEEEE
T ss_pred             CCCCEEEcCc--ceEEEcCCCeEEEEEECCCCCCceEEEECCEe------cCCCCCEEEeCCEEEECCCChHHCEEEEEE
Confidence            4578888777  7899999999999999988    999996332      222345555577999999999999999999


Q ss_pred             EEcCCCccEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTV  102 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V  102 (267)
                      +.|..|.....+.|.|
T Consensus        79 a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           79 TSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             eccCCCcEEEEEEEEE
Confidence            9999988777777765

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=88.90  Aligned_cols=78  Identities=29%  Similarity=0.582  Sum_probs=66.8

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..       .....|.|.++..+|+|.|+|.|.|..+.....+
T Consensus        13 ~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   92 (100)
T 2edj_A           13 QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSA   92 (100)
T ss_dssp             ECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCE
T ss_pred             eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEE
Confidence            345566888999999999999999999999999987752       2346799999999999999999999998888788


Q ss_pred             EEEEe
Q psy3045         212 ELKLG  216 (267)
Q Consensus       212 ~l~v~  216 (267)
                      .|.|.
T Consensus        93 ~l~V~   97 (100)
T 2edj_A           93 VLDVT   97 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88775

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.51  E-value=6.6e-14  Score=103.90  Aligned_cols=118  Identities=20%  Similarity=0.479  Sum_probs=82.2

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEECCcc--CC------C------------------------CCCCeEEeccC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDGKP--VP------D------------------------HNEPVFRIDSV  188 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~~--~~------~------------------------~~~~~l~i~~~  188 (267)
                      ...+.+|++++|.|.+.+.+  .+.+.|++....  ..      .                        .....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            34788999999999988753  679999974311  00      0                        01235999999


Q ss_pred             CCCCCeEEEEEEEcCC--CCceEEEEEEEe-cccCCCeee-cCCceeEEecCCcEEEEEEeec-CCC-C-cEEEEECCEE
Q psy3045         189 RKEDKGMYQCVIRNEQ--ESAQASGELKLG-GRFDPPVIK-ESFSDETLNPGPNYYFKCIASG-NPT-P-EISWYLDGKK  261 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~--~~~~~~~~l~v~-~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~i~W~~~~~~  261 (267)
                      +.+|+|.|.|.+.+..  ........+.|. ....+|.+. ..+.. . .+|+.+.|.|.+.+ .|. + .+.|+++|+.
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~  166 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS-T-QPDGNVVIACLVQGFFPQEPLSVTWSESGQG  166 (221)
T ss_dssp             CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS-C-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred             CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc-c-ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence            9999999999999864  122233455664 223456555 22322 2 68999999999998 665 4 8999999976


Q ss_pred             c
Q psy3045         262 L  262 (267)
Q Consensus       262 l  262 (267)
                      +
T Consensus       167 ~  167 (221)
T 3m8o_H          167 V  167 (221)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.51  E-value=8.6e-15  Score=112.40  Aligned_cols=158  Identities=11%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             EecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc----
Q psy3045          26 KKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG----   93 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----   93 (267)
                      .+.+|+.++|.|.+.+        +.|+|++.......  ....   ..+..|.+......|.+.|+|+|.+..+.    
T Consensus        97 ~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~--~~~~---~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~  171 (291)
T 1mq8_A           97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP--AVGE---PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE  171 (291)
T ss_dssp             BCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE--CCBT---TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSC
T ss_pred             cccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc--CCCC---CceEEEEeeeeeccCCceEEEEEEecCCccCCc
Confidence            4889999999999998        79999643221111  1111   12345666666555666999999987552    


Q ss_pred             ----cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc---eE
Q psy3045          94 ----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK---TI  166 (267)
Q Consensus        94 ----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~---~~  166 (267)
                          .+....|.|..+|......                          ..+  ..+.+|+.+.|.|.+.|.+++   .+
T Consensus       172 l~~~~s~~~~L~V~~~P~~~~~~--------------------------~~p--~~l~eG~~v~l~C~~~g~~P~~~~~v  223 (291)
T 1mq8_A          172 LFENTSAPYQLQTFVLPATPPQL--------------------------VSP--RVLEVDTQGTVVCSLDGLFPVSEAQV  223 (291)
T ss_dssp             EEEECCCCEECBC-------------------------------------------------------------------
T ss_pred             cccccccceEEEEEecCCCCcee--------------------------cCC--cCccCCCeEEEEEEcCCCCCCcccEE
Confidence                1333455555443211110                          001  156789999999999987543   69


Q ss_pred             EEEECCccCCCC---CCCeEEeccC---CCC--CCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         167 SWMKDGKPVPDH---NEPVFRIDSV---RKE--DKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       167 ~W~~~~~~~~~~---~~~~l~i~~~---~~~--d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .|+++|..+...   .+..+.+...   ..+  +.+.|+|.+.+..........+.|.
T Consensus       224 ~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~  281 (291)
T 1mq8_A          224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY  281 (291)
T ss_dssp             ----------------------------------------------------------
T ss_pred             EEEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence            999999887632   2233333322   233  3567789998765555556666664

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.50  E-value=4.3e-13  Score=87.75  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEE----------EEeeEEEEee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVK----------QVSGTLIIKE   74 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~   74 (267)
                      .|.|...|  .++.+.+|++++|.|.+.+        +.|+|++.   .........++.          ....+|.|.+
T Consensus         4 ~p~f~~~p--~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (108)
T 3cx2_A            4 IGLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW---VDLSSKVGQHLQLHDSYDRASKVYLFELHITD   78 (108)
T ss_dssp             CCSCSBCC--CCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTT---EEGGGGCBTTEEEEEEEETTTTEEEEEEEECS
T ss_pred             ccEEEeCC--CcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCc---ccccccCCceEEEeeEEecccccceEEEEEec
Confidence            47888887  7899999999999999975        88999531   101101111222          1256899999


Q ss_pred             cccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          75 AKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      ++.+|+|.|+|.+.|..|..+..+.|.|.
T Consensus        79 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           79 AQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999998888888875

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.50  E-value=1.9e-13  Score=87.24  Aligned_cols=80  Identities=19%  Similarity=0.392  Sum_probs=65.9

Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      ..+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+...     ....|.|.++..+|+|.|+|.|.|..|....
T Consensus        10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   88 (95)
T 2ckn_A           10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTT   88 (95)
T ss_dssp             CCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEE
T ss_pred             CEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEE
Confidence            3344455667899999999999999887 799999999887643     2468999999999999999999999887776


Q ss_pred             EEEEEE
Q psy3045         210 SGELKL  215 (267)
Q Consensus       210 ~~~l~v  215 (267)
                      .+.+.|
T Consensus        89 ~~~l~V   94 (95)
T 2ckn_A           89 YFSVNV   94 (95)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666655

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=91.41  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=69.8

Q ss_pred             CcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEc
Q psy3045         134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       134 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++..+|+|.|+|.|.|
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   94 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN   94 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            3445556667799999999999999999999999999998875321           12799999999999999999999


Q ss_pred             CCCCceEEEEEEEec
Q psy3045         203 EQESAQASGELKLGG  217 (267)
Q Consensus       203 ~~~~~~~~~~l~v~~  217 (267)
                      ..|.....+.|.|..
T Consensus        95 ~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           95 EAGVTTCNTRLDVTA  109 (116)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEeC
Confidence            998887788887764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3e-14  Score=91.24  Aligned_cols=77  Identities=31%  Similarity=0.633  Sum_probs=64.2

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......|.|.++..+|+|.|+|.+.|..+....+..+.+
T Consensus        15 ~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v   91 (96)
T 2ens_A           15 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI   91 (96)
T ss_dssp             EESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEE
T ss_pred             ECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence            33444578899999999999999989999999999998888899999999999999999999997655444443443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=6e-14  Score=90.36  Aligned_cols=92  Identities=27%  Similarity=0.333  Sum_probs=70.2

Q ss_pred             CCCcccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccC
Q psy3045           4 SDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE   78 (267)
Q Consensus         4 ~~~~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   78 (267)
                      .+.......||.|...+  ....+.+|+++.|.|.+.+     +.|++++.....     ...........|.|.++..+
T Consensus         2 ss~~~~~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~-----~~~~~~~~~~~L~i~~v~~~   74 (99)
T 2yr3_A            2 SSGSSGMEVAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY-----ARSTCEAGVAELHIQDALPE   74 (99)
T ss_dssp             CCCCSCCCEEEEEEECC--CCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSS-----CCCEEETTEEEEEECSCCTT
T ss_pred             CCccCCcccCCceeecC--CCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcc-----cceEeeCCeEEEEECCCChh
Confidence            34555566789998887  7889999999999999987     999996432211     11122223468999999999


Q ss_pred             CCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          79 DSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      |+|.|+|.+.|..|.....+.|.|
T Consensus        75 D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           75 DHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             CCBCEEEEEECSSCEEEEECCEEE
T ss_pred             hCEEEEEEEEECCCeEEEEEEEEE
Confidence            999999999999998777766665

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.50  E-value=8.6e-14  Score=89.60  Aligned_cols=76  Identities=24%  Similarity=0.473  Sum_probs=64.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC----------CeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----------PVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~----------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....          ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE   91 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEE
Confidence            3445788999999999999999999999999988764321          269999999999999999999999888777


Q ss_pred             EEEEEe
Q psy3045         211 GELKLG  216 (267)
Q Consensus       211 ~~l~v~  216 (267)
                      ..|.|.
T Consensus        92 ~~l~V~   97 (99)
T 1u2h_A           92 ARLEVR   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777765

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.49  E-value=2.2e-15  Score=111.37  Aligned_cols=123  Identities=17%  Similarity=0.280  Sum_probs=83.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCC---ceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPV---KTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~---~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      +....+.+|+.++|.|.+.+.++   +.+.|  ++..+...              ....|.|..+..+|+|.|.|.+.|.
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~   88 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP   88 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence            44446778999999999998754   68999  44443210              1124666667778999999999998


Q ss_pred             CCCceEEEEEEEecccCCCeeecCC-ceeEEecCCcEEEEEEeecC-CC-CcEEEEECCEEcCCC
Q psy3045         204 QESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVNA  265 (267)
Q Consensus       204 ~~~~~~~~~l~v~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~l~~~  265 (267)
                      .+.......+.......+|.+...+ ....+..|..+.|.|.+.|+ |+ +.|.|+|||+.+..+
T Consensus        89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  153 (214)
T 1ow0_A           89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  153 (214)
T ss_dssp             SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence            7654433333321223567665433 22235678899999999985 43 499999999987643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=1.7e-13  Score=89.77  Aligned_cols=82  Identities=13%  Similarity=0.212  Sum_probs=64.9

Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCCCC---ceEEEEECCccCCC------------------CCCCeEEeccCCCCCC
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPV---KTISWMKDGKPVPD------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~~~W~~~~~~~~~------------------~~~~~l~i~~~~~~d~  193 (267)
                      +.+...+....+.+|++++|.|.+.|.|.   +.+.|+|++.....                  .....|.|.+++.+|+
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence            44455566778999999999999999887   99999997621100                  0135799999999999


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEe
Q psy3045         194 GMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       194 g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |.|+|.|.|..|....++.|.|.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           85 GSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999988888887764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.49  E-value=4.3e-14  Score=107.19  Aligned_cols=119  Identities=16%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEECCc--cC-------------------CC---------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKDGK--PV-------------------PD---------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~--~~-------------------~~---------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.+  .+.+.|+++..  .+                   ..         .....|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (257)
T 3bn9_D           10 GLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE   89 (257)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             EEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            4788999999999998765  67899998531  11                   00         11247999999999


Q ss_pred             CCeEEEEEEEcCCCC---------c----eEEEEEEEec-ccCCCeeecCCceeEEecCCcEEEEEEeecC-CCC-cEEE
Q psy3045         192 DKGMYQCVIRNEQES---------A----QASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISW  255 (267)
Q Consensus       192 d~g~y~C~~~~~~~~---------~----~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W  255 (267)
                      |+|.|.|.+.+..+.         .    .....|.|.. ...+|.+........+.+|+.+.|.|.+.|. |.| .|.|
T Consensus        90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W  169 (257)
T 3bn9_D           90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  169 (257)
T ss_dssp             GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEE
T ss_pred             hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEE
Confidence            999999999987541         1    1223566653 2235666544333346789999999999986 777 9999


Q ss_pred             EECCEEc
Q psy3045         256 YLDGKKL  262 (267)
Q Consensus       256 ~~~~~~l  262 (267)
                      +++|..+
T Consensus       170 ~k~g~~~  176 (257)
T 3bn9_D          170 NSGALTS  176 (257)
T ss_dssp             TTTTCCS
T ss_pred             eeCCCcC
Confidence            9999764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=90.63  Aligned_cols=92  Identities=23%  Similarity=0.324  Sum_probs=72.1

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y   83 (267)
                      ...||.|...+  ....+.+|+++.|.|.+.+     +.|++++....     ....++. ..+++|.|.+++.+|+|.|
T Consensus         5 ~~~pP~i~~~p--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y   77 (118)
T 2eo9_A            5 SSGPPVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVS-----TQDSRIKQLENGVLQIRYAKLGDTGRY   77 (118)
T ss_dssp             CCCSCCCSBCC--CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCC-----TTSTTEEEEETTEEEEESCCGGGCCCE
T ss_pred             CCCCCEEEcCC--CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECc-----CCCCeEEEccCCEEEEccCCcCCCEEE
Confidence            34578898877  7899999999999999987     99999633211     1122332 3456899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEecccc
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLAA  108 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~~  108 (267)
                      +|.+.|..|.....+.|.|...+.+
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           78 TCIASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEEEECSSCEEEEECCEEEECCSCC
T ss_pred             EEEEEcCCCcEEEEEEEEEEeCCCC
Confidence            9999999998888888888876543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.49  E-value=9.6e-14  Score=90.08  Aligned_cols=77  Identities=18%  Similarity=0.398  Sum_probs=66.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.|.|..|......
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   94 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA   94 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEE
Confidence            345588899999999999999999999999998876542         24699999999999999999999999888888


Q ss_pred             EEEEec
Q psy3045         212 ELKLGG  217 (267)
Q Consensus       212 ~l~v~~  217 (267)
                      .|.|..
T Consensus        95 ~l~V~~  100 (103)
T 3qp3_A           95 TLDVTG  100 (103)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            887753

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.49  E-value=5.9e-14  Score=107.22  Aligned_cols=159  Identities=19%  Similarity=0.335  Sum_probs=94.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+.....             ......|+...      +.+|.|.+++
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            3578999999999999853       99998643321111             11123455432      2469999999


Q ss_pred             cCCCeeEEEEEEcCC------C-----------cc-E-------EEEEEEEEeccccccCCceEEEeCCCceEEEEEeec
Q psy3045          77 VEDSGKYLCVVNNSV------G-----------GE-S-------VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI  131 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~------~-----------~~-~-------~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  131 (267)
                      .+|+|.|+|.+.+..      +           .. .       ..+.|.|...  ....+.                  
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--~~~~P~------------------  170 (267)
T 3u1s_H          111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--STKGPS------------------  170 (267)
T ss_dssp             GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC--CCBCCE------------------
T ss_pred             hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC--CCCCCE------------------
Confidence            999999999996210      0           00 0       0122333210  001111                  


Q ss_pred             CCCcccccCCceEEEecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------C-----CCeEEeccCCCCCCe
Q psy3045         132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------N-----EPVFRIDSVRKEDKG  194 (267)
Q Consensus       132 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~-----~~~l~i~~~~~~d~g  194 (267)
                          .....+.. ....|+.++|.|.+.+. | .+.+.|  ++..+...          +     .+.|.+.....+| +
T Consensus       171 ----v~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~  242 (267)
T 3u1s_H          171 ----VFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-Q  242 (267)
T ss_dssp             ----EEEECCCG-GGEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-C
T ss_pred             ----EEEecCCc-ccCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-C
Confidence                11011111 22468999999998874 5 568999  66554321          1     1357777777778 9


Q ss_pred             EEEEEEEcCCCCceE
Q psy3045         195 MYQCVIRNEQESAQA  209 (267)
Q Consensus       195 ~y~C~~~~~~~~~~~  209 (267)
                      .|+|.+.|.......
T Consensus       243 ~ytC~v~h~~~~~~~  257 (267)
T 3u1s_H          243 TYICNVNHKPSNTKV  257 (267)
T ss_dssp             CCEEEEEEGGGTEEE
T ss_pred             EEEEEEEECCCCcce
Confidence            999999998754433

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=93.17  Aligned_cols=81  Identities=30%  Similarity=0.521  Sum_probs=68.4

Q ss_pred             ccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       138 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..+..
T Consensus        13 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   92 (110)
T 2dm3_A           13 LQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQN   92 (110)
T ss_dssp             EECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEE
T ss_pred             EeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEE
Confidence            344556689999999999999999999999999998876432          2479999999999999999999999988


Q ss_pred             eEEEEEEEecc
Q psy3045         208 QASGELKLGGR  218 (267)
Q Consensus       208 ~~~~~l~v~~~  218 (267)
                      ..++.|.|...
T Consensus        93 ~~~~~l~V~~~  103 (110)
T 2dm3_A           93 SFSLELVVAAK  103 (110)
T ss_dssp             EECCEEEEECC
T ss_pred             EEEEEEEEeCC
Confidence            77888888753

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=8.1e-14  Score=89.74  Aligned_cols=75  Identities=23%  Similarity=0.455  Sum_probs=63.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....      ...|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   97 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT   97 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEE
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            344578899999999999999999999999998876432      35799999999999999999999998877666665


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      |
T Consensus        98 V   98 (99)
T 2yr3_A           98 V   98 (99)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.49  E-value=3.8e-13  Score=86.19  Aligned_cols=77  Identities=18%  Similarity=0.405  Sum_probs=65.5

Q ss_pred             CceEEEecCCCEEEEeEeCCC-CCceEEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.+. |.+.+.|++++..+.....         ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   87 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY   87 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence            445688999999999999997 8899999999987764321         379999999999999999999999988888


Q ss_pred             EEEEEec
Q psy3045         211 GELKLGG  217 (267)
Q Consensus       211 ~~l~v~~  217 (267)
                      ..|.|..
T Consensus        88 ~~l~V~~   94 (97)
T 2bk8_A           88 AELFVKG   94 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEEe
Confidence            8877753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.8e-13  Score=109.12  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+.+|+.+.|.|.+.| |.+.+.|++++..+....         .+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~  331 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSV  331 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEE
Confidence            34558899999999999998 989999999776543221         35799999999999999999999988888787


Q ss_pred             EEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEE
Q psy3045         212 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS  254 (267)
Q Consensus       212 ~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  254 (267)
                      .+.|..   .+           .+|..+.|.|.+.|.|.|.|.
T Consensus       332 ~l~V~~---~~-----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          332 ELKVYN---FT-----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEES---SC-----------CC-------------------
T ss_pred             EEEEEe---ee-----------ccCCceEEEEEeCCCCCCccc
Confidence            777742   11           568899999999999999764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=2.1e-13  Score=102.61  Aligned_cols=123  Identities=16%  Similarity=0.298  Sum_probs=83.4

Q ss_pred             CceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccC------------------CCC----------CCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPV------------------PDH----------NEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~------------------~~~----------~~~~l~i~~~  188 (267)
                      +....+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+                  ...          ....|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence            445588899999999998775  56799999843  211                  000          1346999999


Q ss_pred             CCCCCeEEEEEEEcCCC-C------ceEEEEEEEecccC----CCeeecC-CceeEEecCCcEEEEEEeecC-CC-CcEE
Q psy3045         189 RKEDKGMYQCVIRNEQE-S------AQASGELKLGGRFD----PPVIKES-FSDETLNPGPNYYFKCIASGN-PT-PEIS  254 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~~-~------~~~~~~l~v~~~~~----~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~i~  254 (267)
                      +.+|+|.|.|.+.+... .      ......|.|.....    +|...+. +....+.+|+.+.|.|.+.|. |. +.+.
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~  167 (242)
T 1hxm_B           88 EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIH  167 (242)
T ss_dssp             CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEE
T ss_pred             CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEE
Confidence            99999999999987631 1      11134566653211    2332222 333345679999999999986 64 6999


Q ss_pred             EEECCE-EcC
Q psy3045         255 WYLDGK-KLV  263 (267)
Q Consensus       255 W~~~~~-~l~  263 (267)
                      |+++|. .+.
T Consensus       168 W~~~~~~~l~  177 (242)
T 1hxm_B          168 WEEKKSNTIL  177 (242)
T ss_dssp             EEESSSCCCC
T ss_pred             EEcCCCEeec
Confidence            999997 553

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=110.10  Aligned_cols=119  Identities=13%  Similarity=0.192  Sum_probs=86.9

Q ss_pred             EecCCCEEEEeEeCCC---C-CceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGN---P-VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~---p-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +..|+.++|.|.+.+.   | ...|.|++++..+...              ....|.|..+..+|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6789999999999887   3 2379999998665211              12368888999999999999999987644


Q ss_pred             eEEEEEEE-ecccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEEcCC
Q psy3045         208 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  264 (267)
Q Consensus       208 ~~~~~l~v-~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~l~~  264 (267)
                      .....+.+ .....+|.+.+.+.......|+.+.|.|.+.|+++  +.|.|+|||+.+..
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  319 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN  319 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCC
Confidence            33333322 11235777777665555556899999999999644  48999999998743

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.48  E-value=1.1e-13  Score=104.94  Aligned_cols=118  Identities=17%  Similarity=0.366  Sum_probs=79.5

Q ss_pred             EEEecCCCEEEEeEeCCC--CCceEEEEECCc--c---C---C-C---------------------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN--PVKTISWMKDGK--P---V---P-D---------------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~--~---~---~-~---------------------~~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.+.+.  +...+.|+|...  .   +   . .                     .....|.|.+++.+
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (253)
T 3liz_H           10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE   89 (253)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            478899999999998763  366899998431  1   0   0 0                     01234999999999


Q ss_pred             CCeEEEEEEEcCC----CCceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeec-CCCC-cEEEEECCEE
Q psy3045         192 DKGMYQCVIRNEQ----ESAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKK  261 (267)
Q Consensus       192 d~g~y~C~~~~~~----~~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~  261 (267)
                      |+|.|.|.+.+..    ........+.|. ....+|.+........+..|+.+.|.|.+.+ .|.+ .+.|+++|..
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             GCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             hCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence            9999999998752    112223456664 3335676664444445667999999999998 6666 8999999873

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3e-13  Score=87.11  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             CCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      +++.+...+....+.+|+.+.|.|.+  .|.+.+.|+|+|..+..+.         ...|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            34555566677799999999999999  7888999999999886442         247999999999999999999997


Q ss_pred             CCCceEEEEEEEe
Q psy3045         204 QESAQASGELKLG  216 (267)
Q Consensus       204 ~~~~~~~~~l~v~  216 (267)
                        ....++.|.|.
T Consensus        84 --~~~~~a~L~V~   94 (100)
T 2yuz_A           84 --NVTLPAKVHVI   94 (100)
T ss_dssp             --CCCEEEEEEEE
T ss_pred             --CeeEEEEEEEe
Confidence              44567777776

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=87.93  Aligned_cols=76  Identities=28%  Similarity=0.497  Sum_probs=64.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC---------CeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~---------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|.++..+|+|.|+|.|.|..+....+.
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~   92 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC   92 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            4455888999999999999999999999999988764422         3699999999999999999999998887777


Q ss_pred             EEEEe
Q psy3045         212 ELKLG  216 (267)
Q Consensus       212 ~l~v~  216 (267)
                      .|.|.
T Consensus        93 ~l~V~   97 (99)
T 3puc_A           93 KLTIK   97 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77765

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=90.78  Aligned_cols=91  Identities=23%  Similarity=0.266  Sum_probs=70.3

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE-----eeEEEEeecccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV-----SGTLIIKEAKVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d   79 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....  .   ...++...     ...|.|.+++.+|
T Consensus         5 ~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~--~---~~~~~~~~~~~~~~~~L~i~~v~~~D   77 (110)
T 2dm2_A            5 SSGAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS--P---KSDHYTIQRDLDGTCSLHTTASTLDD   77 (110)
T ss_dssp             CSCCCCBSSCC--CCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCC--T---TCSSEEEEECTTCEEEEEESSCCTTT
T ss_pred             CCCCCEEEecC--cCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECC--C---CCCeEEEEECCCcEEEEEECCCChhh
Confidence            34578898887  7889999999999999987     99999633211  1   12222221     2379999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      +|.|+|.+.|..|.....+.|.|...+.
T Consensus        78 ~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           78 DGNYTIMAANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             CSCCEEEEECTTCCEEECCCEEEECCSC
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEECCCC
Confidence            9999999999999988888888886543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=87.63  Aligned_cols=89  Identities=28%  Similarity=0.336  Sum_probs=69.0

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y   83 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....     ....++. ..+++|.|.+++.+|+|.|
T Consensus         5 ~~~~P~i~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y   77 (100)
T 2edj_A            5 SSGPPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-----GRDPRATIQEQGTLQIKNLRISDTGTY   77 (100)
T ss_dssp             CCSSCEEEECC--CCEEEESSSEEEECCEEECSSCCEEEEEESSSEES-----SSCSSCEECTTCCEEEESCCTTTCCEE
T ss_pred             CCCCCEEEeCc--CCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECC-----CCCCCEEEcCCCEEEEccCCcccCEEE
Confidence            35678898877  7889999999999999987     99999632111     0112222 2345799999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEec
Q psy3045          84 LCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      +|.+.|..|.....+.|.|.++
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           78 TCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EEEEECSSCCCBCCEEEEEESC
T ss_pred             EEEEEcCCCCEEEEEEEEEecC
Confidence            9999999998888888888753

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.46  E-value=4.5e-13  Score=103.63  Aligned_cols=116  Identities=18%  Similarity=0.356  Sum_probs=83.6

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------------------C---------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------------------D---------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------------------~---------~~~~~l~i~~~~~  190 (267)
                      ...+.+|++++|.|.+.+.+  .+.+.|+++.  ..+.                   .         .....|.|.+++.
T Consensus        31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  110 (291)
T 2gki_A           31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS  110 (291)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred             cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence            45788999999999998776  5789999853  1110                   0         0124699999999


Q ss_pred             CCCeEEEEEEEcCC-CCce----EEEEEEEecc-------------cCCCeeecCCceeEEecCCcEEEEEEeecCCCC-
Q psy3045         191 EDKGMYQCVIRNEQ-ESAQ----ASGELKLGGR-------------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-  251 (267)
Q Consensus       191 ~d~g~y~C~~~~~~-~~~~----~~~~l~v~~~-------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-  251 (267)
                      +|+|.|.|.+.+.. +...    ....|.|...             ..++.+...+....+.+|+.++|.|.+.+.+.+ 
T Consensus       111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  190 (291)
T 2gki_A          111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNS  190 (291)
T ss_dssp             GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEET
T ss_pred             HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccc
Confidence            99999999999874 2111    1234555430             113455556667789999999999999988876 


Q ss_pred             -----cEEEEEC
Q psy3045         252 -----EISWYLD  258 (267)
Q Consensus       252 -----~i~W~~~  258 (267)
                           .+.|||+
T Consensus       191 ~~~~~~v~W~k~  202 (291)
T 2gki_A          191 RTRKNYLAWYQQ  202 (291)
T ss_dssp             TTTEECEEEEEE
T ss_pred             cccceeEEEEEE
Confidence                 8999996

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.46  E-value=1.6e-12  Score=95.98  Aligned_cols=115  Identities=21%  Similarity=0.316  Sum_probs=87.0

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++..+|.|.|+|.|.|..|.....
T Consensus        26 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  105 (215)
T 3mtr_A           26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE  105 (215)
T ss_dssp             SEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEE
T ss_pred             ceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEE
Confidence            34578899999999999999999999999998886542           3679999999999999999999999988888


Q ss_pred             EEEEEecccCCCeeecCCceeEEecCCcEEEEEEee----cCCCC--cEEEEECCEE
Q psy3045         211 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS----GNPTP--EISWYLDGKK  261 (267)
Q Consensus       211 ~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~i~W~~~~~~  261 (267)
                      ..+.+.....+|....     ....+..+.|.|...    +.|..  .+.|.+++..
T Consensus       106 ~~l~v~~~P~~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~  157 (215)
T 3mtr_A          106 FILVQADTPSSPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE  157 (215)
T ss_dssp             EEEEECCCCCCCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC
T ss_pred             EEEEECCCCCCCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCC
Confidence            8888765433443221     123467788998743    22333  4788887753

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.46  E-value=4.8e-13  Score=96.04  Aligned_cols=152  Identities=9%  Similarity=0.058  Sum_probs=96.7

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      .+.+.|  ....|.+|+++.|+|.+.-     +.|.-..+.    ...  ..  ......+.|.+++ +|++.|.|.+..
T Consensus         4 ~v~v~P--~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~----~~~--~~--g~~~~~~~ls~vs-~d~~~~~C~~~c   72 (196)
T 3bn3_B            4 WADLQP--RVAFVERGGSLWLNCSTNCPRPERGGLETSLRR----NGT--QR--GLRWLARQLVDIR-EPETQPVCFFRC   72 (196)
T ss_dssp             CEEEES--SEEEEETTEEEEEEEEECCSSCSEEEEECSSEE----EEE--EE--ETTEEEEEEEEEC-SSEECCEEEEEE
T ss_pred             EEEEcC--CCcEEcCCCeEEEEEeCCCCCCCccEEEEccCC----eeE--cc--ccCceEEEEEEEc-cCCCceEEEEEC
Confidence            445555  6788999999999999875     566431100    000  00  0012248899998 888889999876


Q ss_pred             CCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC-CCc--eE
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVK--TI  166 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~  166 (267)
                      ........+.|.|..+|.....   .                         +....+.+|+.++|.|.+.+. |..  .+
T Consensus        73 ~~~~~~~~v~l~Vy~~P~~v~i---~-------------------------~~~~~~~~G~~~tL~C~v~~~~P~~~L~i  124 (196)
T 3bn3_B           73 ARRTLQARGLIRTFQRPDRVEL---M-------------------------PLPPWQPVGENFTLSCRVPGAGPRASLTL  124 (196)
T ss_dssp             TTEEEEEECEEEEEBCCCCCEE---C-------------------------CCCSSEETTSEEEEEEEETTCBCGGGEEE
T ss_pred             CCCceEEEEEEEEecCCCcCEE---c-------------------------cCCccccCCCcEEEEEEeCCccCCCCcEE
Confidence            5555677788888775432111   0                         111136779999999999876 544  48


Q ss_pred             EEEECCccCCCC-----C-C-----CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         167 SWMKDGKPVPDH-----N-E-----PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       167 ~W~~~~~~~~~~-----~-~-----~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .|++++..+...     . .     ..+.+.....++...|+|.|.+..+
T Consensus       125 ~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          125 TLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             EEEeCCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            999998776321     1 1     3444544444444499999998765

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.46  E-value=2.5e-13  Score=88.13  Aligned_cols=87  Identities=23%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      ..+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++...      ....++..    ...+|.|.+++.+|+|
T Consensus         6 ~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G   77 (103)
T 3qp3_A            6 DHAPRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL------QESSKIHYTNTSGVLTLEILDCHTDDSG   77 (103)
T ss_dssp             CEEEEEEECC--CCEEEETTCCEEEEEEEEEESCCEEEEEETTEEC------CCCSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCCCEEEeCC--cceEEeCCCeEEEEEEEEecCCCEEEEEECCEEC------CCCCCEEEEECCCEEEEEEcCCCcccCE
Confidence            4478888877  7889999999999999977     9999963221      11223222    2247999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEec
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      .|+|.+.|..|.......|.|...
T Consensus        78 ~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           78 TYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEECC
Confidence            999999999999888888888753

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=2.6e-13  Score=87.34  Aligned_cols=86  Identities=21%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-----EEeeEEEEeecccCCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-----QVSGTLIIKEAKVEDS   80 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~   80 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....      ...+..     .....|.|.+++.+|+
T Consensus         3 ~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~D~   74 (99)
T 1g1c_A            3 MEAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE------RSDRIYWYWPEDNVCELVIRDVTGEDS   74 (99)
T ss_dssp             CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC------CCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCCceEecC--cceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECC------CCCCEEEEEcCCCEEEEEECCCCcCCC
Confidence            3568888777  7889999999999999987     99999643211      122221     1234799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |.|+|.+.|..|.....+.|.|..
T Consensus        75 G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           75 ASIMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCcEEEEEEEEEec
Confidence            999999999999888888887764

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.45  E-value=9e-14  Score=90.67  Aligned_cols=80  Identities=29%  Similarity=0.590  Sum_probs=67.8

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.|.|..|..
T Consensus        17 i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   96 (106)
T 1nct_A           17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   96 (106)
T ss_dssp             EEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBC
T ss_pred             EEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeE
Confidence            3445566689999999999999999999999999998876432         3579999999999999999999999988


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.|.|.
T Consensus        97 ~~~~~l~V~  105 (106)
T 1nct_A           97 EAEFTLTIQ  105 (106)
T ss_dssp             CEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            878777763

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.6e-13  Score=87.41  Aligned_cols=87  Identities=23%  Similarity=0.263  Sum_probs=66.3

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCe
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSG   81 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G   81 (267)
                      +..||.|...+  .+..+.+|+++.|.|.+ .    +.|++++..      +....++...    ...|.|.++..+|+|
T Consensus         4 ~~~p~~~~~~~--~~~~v~~G~~v~l~C~v-~p~p~v~W~k~g~~------l~~~~r~~i~~~~~~~~L~I~~v~~~D~G   74 (100)
T 2yuz_A            4 GSSGLKILTPL--TDQTVNLGKEICLKCEI-SENIPGKWTKNGLP------VQESDRLKVVQKGRIHKLVIANALTEDEG   74 (100)
T ss_dssp             SSCCCCCSBCC--CCEEEETTSCCCEEEEC-SSCCCEEEEETTEE------CCCCSSEEEEECSSEEEEEESSCCGGGCS
T ss_pred             CCCCCEEeccC--CceEEcCCCCEEEEEEe-CCCCeEEEEECCEE------CCCCCcEEEEEeCCEEEEEECCCChhhCE
Confidence            34578888877  78999999999999999 6    999996332      1223333322    247999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      .|+|.+.|.  ..+....|.|.++|.
T Consensus        75 ~Y~C~a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           75 DYVFAPDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             EEEEEESSS--CCCEEEEEEEECCSC
T ss_pred             EEEEEEcCC--CeeEEEEEEEeCCCC
Confidence            999999987  556777888877553

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=9.5e-13  Score=84.49  Aligned_cols=77  Identities=22%  Similarity=0.366  Sum_probs=62.7

Q ss_pred             CCceEEEecCCCEEEEeEeC-CCCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++......    ....|.|.++..+|+|.|+|.+.|..+....+..|.
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   95 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH   95 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEE
Confidence            34555889999999999998 6888999999975443222    256899999999999999999999998877777776


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      |.
T Consensus        96 V~   97 (98)
T 1gl4_B           96 VQ   97 (98)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.45  E-value=5.1e-13  Score=102.08  Aligned_cols=118  Identities=17%  Similarity=0.331  Sum_probs=79.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-----CceEEEEECC--ccCC-------------C--------CCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDG--KPVP-------------D--------HNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~--~~~~-------------~--------~~~~~l~i~~~~~~d  192 (267)
                      +....+.+|++++|.|.+.+.+     .+.+.|++++  ..+.             .        .....|.|.+++.+|
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  101 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED  101 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence            4555788999999999998876     4799999853  2110             0        122479999999999


Q ss_pred             CeEEEEEEEcCCCC-ceEEEEEEEecccC------CCe--------------eecCCceeEEecCCcEEEEEEeecCCC-
Q psy3045         193 KGMYQCVIRNEQES-AQASGELKLGGRFD------PPV--------------IKESFSDETLNPGPNYYFKCIASGNPT-  250 (267)
Q Consensus       193 ~g~y~C~~~~~~~~-~~~~~~l~v~~~~~------~p~--------------~~~~~~~~~~~~g~~~~l~C~~~~~p~-  250 (267)
                      +|.|.|.+.+..+. ......|.|.....      +|.              ....+....+.+|+.++|.|.+.+.++ 
T Consensus       102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~  181 (268)
T 1x9q_A          102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG  181 (268)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence            99999999987432 11223444443110      111              122234567889999999999998764 


Q ss_pred             -CcEEEEEC
Q psy3045         251 -PEISWYLD  258 (267)
Q Consensus       251 -~~i~W~~~  258 (267)
                       +.+.||++
T Consensus       182 ~~~v~W~k~  190 (268)
T 1x9q_A          182 HYWMNWVRQ  190 (268)
T ss_dssp             GCEEEEEEE
T ss_pred             ccEEEEEEe
Confidence             78999985

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.45  E-value=3.5e-13  Score=86.87  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-E--eeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-V--SGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~--~~~l~i~~~~~~d~G~Y   83 (267)
                      .||.|...+  ....+.+|+++.|.|.+.+     +.|++++....  ..  ...+... .  ...|.|.+++..|+|.|
T Consensus         4 ~~P~~~~~p--~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~--~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   77 (100)
T 2kdg_A            4 GPPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ--SD--DLHKMIVSEKGLHSLIFEVVRASDAGAY   77 (100)
T ss_dssp             EEEECCCCC--CCEEEETTCCEEEEEECEEESCCEEEEEETTEEEC--CC--SSSCEEEETTTEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEeCC--CCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECc--CC--CcEEEEEcCCCeEEEEECCCCcccCEEE
Confidence            468888777  7889999999999999987     99999632111  11  1111111 1  24899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEe
Q psy3045          84 LCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|.+.|..|.....+.|.|..
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           78 ACVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEEe
Confidence            999999999888888888865

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.44  E-value=3.6e-13  Score=88.12  Aligned_cols=89  Identities=27%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE--EEEeeEEEEeecccCCCee
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV--KQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~   82 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....      ...+.  ...+..|.|.+++.+|+|.
T Consensus         7 ~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A            7 ERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV------EDSGIVLKDGNRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             ----CCCBSCC--CCEEEETTCCEEEECBCC----CCEEEEESSSBCC------CBTTEEEETTTTEEEECSCCGGGCEE
T ss_pred             ccCCCceecCC--CCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcc------cCCCeEEeCCCcEEEEeecCcccCEE
Confidence            45678898877  7899999999999999987     99999643221      12222  2234689999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEecc
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      |+|.+.|..|.....+.|.|...+
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC--
T ss_pred             EEEEEEeCCCceEEEEEEEEeCCC
Confidence            999999999998888899888654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.44  E-value=5.6e-13  Score=82.68  Aligned_cols=69  Identities=20%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ...+.+|+.+.|.|.+.+ |.+.+.|+|||.++..+.         ...|.|.++..+|+|.|+|.|.|    ...++.|
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l   79 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLV   79 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEE
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEE
Confidence            457889999999999866 888999999999886542         35799999999999999999855    3456667


Q ss_pred             EEe
Q psy3045         214 KLG  216 (267)
Q Consensus       214 ~v~  216 (267)
                      .|.
T Consensus        80 ~V~   82 (84)
T 2lu7_A           80 SVE   82 (84)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            664

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=5.9e-13  Score=84.43  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE--E--eeEEEEeecccCCCee
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ--V--SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~   82 (267)
                      ..+|.|...+  .+..+.+|+++.|.|.+.+    +.|++++..      +....++..  .  ..+|.|.+++.+|+|.
T Consensus         3 ~~~~~~~~~~--~~~~v~~G~~v~l~C~v~~~~~~v~W~k~g~~------i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~   74 (93)
T 1waa_A            3 MALIEVEKPL--YGVEVFVGETAHFEIELSEPDVHGQWKLKGQP------LAASPDCEIIEDGKKHILILHNCQLGMTGE   74 (93)
T ss_dssp             CCCCCEEECC--CCEEEETTSCEEEEEEESSSSCCCEEEETTEE------CCCBTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCCcEeeccC--cceEEeCCCCEEEEEEECCCCCeEEEEECCEE------CcCCCCEEEEEECCEEEEEECCCChhhCEE
Confidence            4578888887  7899999999999999987    999996331      122233322  2  2489999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEe
Q psy3045          83 YLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |+|.+.|.    .....|.|.+
T Consensus        75 Y~C~a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           75 VSFQAANT----KSAANLKVKE   92 (93)
T ss_dssp             EEEEETTE----EEEEEEEEEC
T ss_pred             EEEEECCC----cEEEEEEEEc
Confidence            99999763    3556666653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=9.8e-13  Score=87.52  Aligned_cols=75  Identities=19%  Similarity=0.414  Sum_probs=64.5

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ....|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l  111 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI  111 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence            4457889999999999999999999999999887532        13459999999999999999999999988778877


Q ss_pred             EEe
Q psy3045         214 KLG  216 (267)
Q Consensus       214 ~v~  216 (267)
                      .|.
T Consensus       112 ~V~  114 (118)
T 2e7c_A          112 RVV  114 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4.1e-13  Score=88.25  Aligned_cols=83  Identities=17%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCC---CCceEEEEECCcc-CCC------------C-----CCCeEEeccCCCCCC
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDGKP-VPD------------H-----NEPVFRIDSVRKEDK  193 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~~-~~~------------~-----~~~~l~i~~~~~~d~  193 (267)
                      ..+...+....+.+|++++|.|.+.+.   |.|.|.|||+... +..            .     ....|.|.++...|+
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   92 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR   92 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence            345556677789999999999998764   7889999997421 110            0     136799999999999


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEec
Q psy3045         194 GMYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       194 g~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      |.|+|+|.|..+..+..+.|.|..
T Consensus        93 G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           93 GYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             SCEEEEEECSSCEEEEEECCEEEC
T ss_pred             EEEEEEEEEcCCcEEEEEEEEEEc
Confidence            999999999999888888888863

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.43  E-value=4.7e-13  Score=86.28  Aligned_cols=74  Identities=30%  Similarity=0.582  Sum_probs=62.4

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.++..+|+|.|+|.|.|..|....++
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            3457889999999999999999999999999877542          124799999999999999999999998877666


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .|.|
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.43  E-value=5.2e-13  Score=93.25  Aligned_cols=74  Identities=30%  Similarity=0.515  Sum_probs=64.5

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        50 ~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  129 (154)
T 1fhg_A           50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE  129 (154)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEE
Confidence            3478899999999999999999999999998876432          247999999999999999999999998888888


Q ss_pred             EEEe
Q psy3045         213 LKLG  216 (267)
Q Consensus       213 l~v~  216 (267)
                      |.|.
T Consensus       130 l~V~  133 (154)
T 1fhg_A          130 LLVE  133 (154)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8886

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=84.27  Aligned_cols=74  Identities=19%  Similarity=0.437  Sum_probs=61.3

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      ....+.+|+.+.|.|.+.+.| +.+.|++++..+....     ...|.|.++..+|+|.|+|.|.|..+.....+.+.|.
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   89 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS   89 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBC
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEe
Confidence            344678899999999999876 6999999998875432     4589999999999999999999998877666666554

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.42  E-value=5.5e-13  Score=88.57  Aligned_cols=69  Identities=16%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      .+..+.|.|.+.|.|.|.++|+|||.++..+.                ...|.|..+...|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            46789999999999999999999999886532                24689999999999999999999999888777


Q ss_pred             EEEEe
Q psy3045         212 ELKLG  216 (267)
Q Consensus       212 ~l~v~  216 (267)
                      .+.+.
T Consensus        94 ~l~v~   98 (126)
T 1he7_A           94 MAAFM   98 (126)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            77665

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=1.2e-12  Score=84.90  Aligned_cols=83  Identities=23%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCc--eEEEE----eeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLND--RVKQV----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~d~G~   82 (267)
                      |+.|...+  .++.+.+|+++.|.|.+.+    +.|++++...      ....  ++...    ...|.|.+++.+|+|.
T Consensus         7 p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~l------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   78 (103)
T 1x44_A            7 GIMVTKQL--EDTTAYCGERVELECEVSEDDANVKWFKNGEEI------IPGPKSRYRIRVEGKKHILIIEGATKADAAE   78 (103)
T ss_dssp             SCCCSBCC--CCEEEETTEEEEEEEECSSSSCCCEEEETTEEC------CCSTTCSEEEEEETTEEEEEEEEECTTTCSE
T ss_pred             CceeeccC--CCEEEECCCCEEEEEEecCCCCeEEEEECCEEC------CCCCceEEEEEEcCCEEEEEECCCCcccCEE
Confidence            44577776  7889999999999999987    9999964321      1111  22221    2589999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |+|.+.|    ......|.|...+.
T Consensus        79 Y~C~a~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           79 YSVMTTG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EEEEETT----EEEEEEEEEECCCS
T ss_pred             EEEEECC----CcEEEEEEEeCCCC
Confidence            9999976    46667777776543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.41  E-value=3.2e-13  Score=86.88  Aligned_cols=86  Identities=23%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      .||.|...+  ....+.+|+++.|.|.+.+     +.|++++....     ....++..    ...+|.|.+++.+|+|.
T Consensus         4 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (99)
T 1u2h_A            4 APPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR-----PDQRRFAEEAEGGLCRLRILAAERGDAGF   76 (99)
T ss_dssp             EEEEEEECC--CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECC-----CBTTEEEEECGGGEEEEEESSCCGGGCEE
T ss_pred             CCCEEEEcC--CceEecCCCEEEEEEEEEEcCCCEEEEEECCEECC-----CCCCEEEEECCCCEEEEEEccCCcCCCEE
Confidence            468888777  6789999999999999987     99999633111     11122221    12379999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEe
Q psy3045          83 YLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |+|.+.|..|.....+.|.|.+
T Consensus        77 Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           77 YTCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCceeEEEEEEEEC
Confidence            9999999999888888888764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.41  E-value=1.8e-12  Score=83.23  Aligned_cols=83  Identities=19%  Similarity=0.372  Sum_probs=63.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEec-c-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      +|.+...+ +....+.+|+++.|.|.+. +     +.|++++.+..       ..+....+++|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~-------~~~~~~~~~~L~i~~v~~~D~G~Y~C~   80 (98)
T 1gl4_B            9 PIMVTVEE-QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL-------PSRAMDFNGILTIRNVQPSDAGTYVCT   80 (98)
T ss_dssp             CEEEEECS-CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC-------CTTEEEETTEEEECSCCGGGCEEEEEE
T ss_pred             CcEEEEeC-CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC-------CceeecCCCEEEEeCCChhhCEEEEEE
Confidence            44444433 2678999999999999998 4     99999643221       122334556899999999999999999


Q ss_pred             EEcCCCccEEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTVT  103 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~  103 (267)
                      +.|..|.....+.|.|.
T Consensus        81 a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           81 GSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EECSSCEEEEEEEEEEC
T ss_pred             ecCCCCccccEEEEEEe
Confidence            99999988887777764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.41  E-value=6.9e-13  Score=85.29  Aligned_cols=85  Identities=24%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~   82 (267)
                      .+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++..      +....++...    ...|.|.++..+|+|.
T Consensus         5 ~~P~i~~~~--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (99)
T 3puc_A            5 SKPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA------ITQGGKYKLSEDKGGFFLEIHKTDTSDSGL   76 (99)
T ss_dssp             EEEEEEECC--CCEEEESSSCEEEEEEEEEESCCEEEEEETTEE------CCSSSSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEecC--ccEEEeCCCcEEEEEEEEecCCCEEEEEECCEE------CcCCCCEEEEEeCCEEEEEECCCCcccCEE
Confidence            467888777  7889999999999999987     999996321      1122333322    2379999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEe
Q psy3045          83 YLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |+|.+.|..|.......|.|..
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           77 YTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEeEEEEEEEEe
Confidence            9999999999888888887753

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.6e-12  Score=84.22  Aligned_cols=80  Identities=16%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC-----------CeEEeccCCCCCCeEEEEEEE
Q psy3045         133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~-----------~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      +|..+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+.....           ..|.|.++..+|+|.|+|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            3444555666778999999999999977 6789999999988765431           478999999999999999998


Q ss_pred             cCCCCceEEEEEEEec
Q psy3045         202 NEQESAQASGELKLGG  217 (267)
Q Consensus       202 ~~~~~~~~~~~l~v~~  217 (267)
                      |    ...+..|.|..
T Consensus        85 n----~~~~~~l~V~~   96 (103)
T 1x44_A           85 G----GQSSAKLSVDL   96 (103)
T ss_dssp             T----EEEEEEEEEEC
T ss_pred             C----CcEEEEEEEeC
Confidence            7    35566677764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.41  E-value=4.4e-13  Score=89.75  Aligned_cols=82  Identities=15%  Similarity=0.297  Sum_probs=63.0

Q ss_pred             EEEecCCCEEEEeEeCCC--CCceEEEEECCccCCC-----C------------CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN--PVKTISWMKDGKPVPD-----H------------NEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~~~~~-----~------------~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ..+.+|+.+.|.|.+.+.  |.+.+.|++++..+..     .            ....|.|.++..+|+|.|+|.|.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            367889999999999884  4578999998875421     0            23479999999999999999999999


Q ss_pred             CCceEEEEEEEecccCCCeeecCC
Q psy3045         205 ESAQASGELKLGGRFDPPVIKESF  228 (267)
Q Consensus       205 ~~~~~~~~l~v~~~~~~p~~~~~~  228 (267)
                      +....+..|.|.   .+|.+...+
T Consensus        98 g~~~~~~~l~V~---~~p~i~~~p  118 (122)
T 3s35_X           98 MTKKNSTFVRVH---EKPFVAFGS  118 (122)
T ss_dssp             CEEEEEEEEEEE---EEECC----
T ss_pred             CceEEEEEEEEe---ccCeEEeec
Confidence            988888888876   456665544

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.40  E-value=1.6e-12  Score=84.94  Aligned_cols=91  Identities=13%  Similarity=0.223  Sum_probs=65.5

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEE-----EeeEEEEeecccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQ-----VSGTLIIKEAKVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~d   79 (267)
                      .+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++.....  ........|+..     ...+|.|.+++.+|
T Consensus         5 ~~p~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 3m45_A            5 GSQGQFPLT--QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSD   82 (108)
T ss_dssp             ---CCCEEC--CCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred             cCCCccccC--CeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhH
Confidence            356677666  7899999999999999988     999985331100  001112334443     35689999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEec
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      +|.|+|.+.+ .+..+..+.|.|..+
T Consensus        83 ~G~Y~C~~~n-~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           83 EGQYTCSLFT-MPVKTSKAYLTVLGV  107 (108)
T ss_dssp             CEEEEEEECS-SSCEEEEEEEEEECC
T ss_pred             CeEEEEEEEc-CCCcEEEEEEEEEcC
Confidence            9999999999 777788888888764

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.40  E-value=1.8e-12  Score=82.15  Aligned_cols=78  Identities=14%  Similarity=0.214  Sum_probs=60.9

Q ss_pred             CcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       134 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.+...+....+.+|+.+.|.|.+.+ +.+.+.|+|||.++..+.         ...|.|.++..+|+|.|+|.|.|. 
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~-   82 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT-   82 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE-
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC-
Confidence            334445566678999999999999976 457899999999886532         247999999999999999999874 


Q ss_pred             CCceEEEEEEEe
Q psy3045         205 ESAQASGELKLG  216 (267)
Q Consensus       205 ~~~~~~~~l~v~  216 (267)
                         ..+..|.|.
T Consensus        83 ---~~sa~L~V~   91 (93)
T 1waa_A           83 ---KSAANLKVK   91 (93)
T ss_dssp             ---EEEEEEEEE
T ss_pred             ---cEEEEEEEE
Confidence               345566664

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=9.3e-13  Score=98.30  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             CceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccC-----------------CCC----------CCCeEEeccCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPV-----------------PDH----------NEPVFRIDSVR  189 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~-----------------~~~----------~~~~l~i~~~~  189 (267)
                      +....+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+                 ...          ....|.|.+++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (230)
T 1ypz_F            8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (230)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence            455588899999999998764  56789999843  111                 000          12379999999


Q ss_pred             CCCCeEEEEEEEcC--CCC--ceEEEEEEEeccc------CCCeeec-CCceeEEecCCcEEEEEEeecC-CC-CcEEEE
Q psy3045         190 KEDKGMYQCVIRNE--QES--AQASGELKLGGRF------DPPVIKE-SFSDETLNPGPNYYFKCIASGN-PT-PEISWY  256 (267)
Q Consensus       190 ~~d~g~y~C~~~~~--~~~--~~~~~~l~v~~~~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~  256 (267)
                      .+|+|.|.|.+.+.  ...  ......|.|....      .+|...+ .+....+.+|+.+.|.|.+.|. |. +.+.|+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~  167 (230)
T 1ypz_F           88 EEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWK  167 (230)
T ss_dssp             GGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEE
T ss_pred             hhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEE
Confidence            99999999999874  111  1122355554110      1222221 2333345568999999999986 65 599999


Q ss_pred             E-CCEEcC
Q psy3045         257 L-DGKKLV  263 (267)
Q Consensus       257 ~-~~~~l~  263 (267)
                      + ||+.+.
T Consensus       168 ~~~g~~l~  175 (230)
T 1ypz_F          168 EKDGNTIL  175 (230)
T ss_dssp             CTTSSCBC
T ss_pred             ccCCeEcc
Confidence            9 887664

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.39  E-value=3.3e-12  Score=85.47  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCC------ceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLN------DRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+.+.+|+++.|.|.+.+       +.|++++............      .......++|.|.+++.+|+|.|+|.+.|
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            4568999999999999975       7999964322110000111      11123456899999999999999999999


Q ss_pred             CCCccEEEEEEEEEeccccccCC
Q psy3045          90 SVGGESVETVLTVTAPLAAGVEP  112 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~~~~~~  112 (267)
                      ..|.....+.|.|.+.+.+...+
T Consensus        96 ~~g~~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             SSCEEEEEEEEEEEEEECC----
T ss_pred             CCCceEEEEEEEEeccCeEEeec
Confidence            99998899999999877655544

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.39  E-value=4.2e-13  Score=87.47  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=67.5

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCe
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSG   81 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G   81 (267)
                      ..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++...      ....++...    +.+|.|.+++..|+|
T Consensus        12 ~~~~~i~~~p--~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (106)
T 1nct_A           12 TLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL------STSARHQVTTTKYKSTFEISSVQASDEG   83 (106)
T ss_dssp             SCCCEEEECC--CCEEESSSSCEECCEEEECSSCCBCCBCSSSSCC------TTCSSEEEEECSSEEEEEECCCCSSCCS
T ss_pred             CCCCEEEECC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEEC------CCCCCEEEEECCCEEEEEECcCCchhCE
Confidence            3468888887  7899999999999999987     9999964321      123333322    468999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEE
Q psy3045          82 KYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      .|+|.+.|..|.....+.|.|.
T Consensus        84 ~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           84 NYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EEEECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEEEEeCCCeEEEEEEEEEE
Confidence            9999999999988888887764

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.39  E-value=2.8e-12  Score=81.78  Aligned_cols=75  Identities=21%  Similarity=0.418  Sum_probs=62.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +....+.+|+.+.|.|.+.+  .+.+.|++++..+....     ...|.|.++..+|+|.|+|.|.|..+.....+.+.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   85 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNV   85 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEE
Confidence            44557889999999999887  46999999998876543     468999999999999999999999987777777777


Q ss_pred             ec
Q psy3045         216 GG  217 (267)
Q Consensus       216 ~~  217 (267)
                      ..
T Consensus        86 ~~   87 (95)
T 4hwu_A           86 TD   87 (95)
T ss_dssp             CC
T ss_pred             eC
Confidence            53

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.39  E-value=1.3e-12  Score=84.62  Aligned_cols=70  Identities=14%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             ecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC----------Ce----EEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045         147 DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----------PV----FRIDSVRKEDKGMYQCVIRNEQESAQASGE  212 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~----------~~----l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  212 (267)
                      ..+..+.|.|.+.|.|.|.+.|+++|..+..+..          ..    |.|.++..+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            3477899999999999999999999988765431          22    999999999999999999999998888877


Q ss_pred             EEEe
Q psy3045         213 LKLG  216 (267)
Q Consensus       213 l~v~  216 (267)
                      |.|.
T Consensus        94 l~V~   97 (103)
T 1wwb_X           94 AHFM   97 (103)
T ss_dssp             ECCS
T ss_pred             EEEC
Confidence            7765

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.39  E-value=5e-12  Score=93.44  Aligned_cols=119  Identities=16%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             EEEecCCCEEEEeEeCCC-C---CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEeccc
Q psy3045         144 QTIDFGRPAQFTCKYEGN-P---VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF  219 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p---~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  219 (267)
                      ..+..|+.++|.|.+.+. |   +..+.|+|++.++.. ....|.+......++|.|+|.+.+..+....+..+.+... 
T Consensus        12 ~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~-   89 (304)
T 3shs_A           12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE-   89 (304)
T ss_dssp             SSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECB-
T ss_pred             ccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEecc-
Confidence            367789999999997644 5   458999999988764 5568999999999999999999998776655555555432 


Q ss_pred             CCCeeec-CCceeEEecCCcEEEEEEe--e-cCC-----CCcEEEEECCEEcCC
Q psy3045         220 DPPVIKE-SFSDETLNPGPNYYFKCIA--S-GNP-----TPEISWYLDGKKLVN  264 (267)
Q Consensus       220 ~~p~~~~-~~~~~~~~~g~~~~l~C~~--~-~~p-----~~~i~W~~~~~~l~~  264 (267)
                      ..+.+.. .|.+..+..|..+.|.+.+  . |.|     ...+.|++||..+..
T Consensus        90 a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg  143 (304)
T 3shs_A           90 AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT  143 (304)
T ss_dssp             CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES
T ss_pred             CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC
Confidence            1223322 3445555677889999887  4 344     359999999988753

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.38  E-value=2.5e-12  Score=89.77  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE-----eeEEEEeecccCC
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV-----SGTLIIKEAKVED   79 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d   79 (267)
                      ...+|.|...+  ....+.+|+++.|.|.+.+     +.|++++...      ....++...     ...|.|.+++..|
T Consensus        38 v~~~P~~~~~~--~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D  109 (154)
T 1fhg_A           38 PHVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV------KESRHFQIDYDEEGNCSLTISEVCGDD  109 (154)
T ss_dssp             CCEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC------CCSSSEEEEECTTCEEEEEESSCCGGG
T ss_pred             CCCCCeEEccC--CcEEEeCCCeEEEEEEEEEecCCEEEEEECCEEC------CCCCcEEEEECCCCeEEEEECCCChhc
Confidence            34578888877  6799999999999999987     9999964321      122333322     3589999999999


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEecccc
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTAPLAA  108 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~  108 (267)
                      +|.|+|.+.|..|.....+.|.|...+..
T Consensus       110 ~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          110 DAKYTCKAVNSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEeCcCcC
Confidence            99999999999999888888998876543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.38  E-value=3.6e-12  Score=98.01  Aligned_cols=116  Identities=14%  Similarity=0.253  Sum_probs=81.0

Q ss_pred             CceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccCC----------------------------CCCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPVP----------------------------DHNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~~~  188 (267)
                      +....+.+|++++|.|.+.+.  +.+.+.|++..  ..+.                            ......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            344478899999999998875  56789999743  1110                            011247999999


Q ss_pred             CCCCCeEEEEEEEcC---------CCCceEEEEEEEec------------ccCCCeeecCCceeEEecCCcEEEEEEeec
Q psy3045         189 RKEDKGMYQCVIRNE---------QESAQASGELKLGG------------RFDPPVIKESFSDETLNPGPNYYFKCIASG  247 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~---------~~~~~~~~~l~v~~------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  247 (267)
                      ..+|+|.|.|.+.+.         .........|.|..            ...++.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999886         11112233455543            012455555555 78899999999999988


Q ss_pred             -CC-CCcEEEEE
Q psy3045         248 -NP-TPEISWYL  257 (267)
Q Consensus       248 -~p-~~~i~W~~  257 (267)
                       .+ .+.+.|||
T Consensus       166 ~~~~~~~v~W~r  177 (280)
T 3fku_X          166 NNVGNQGAAWLQ  177 (280)
T ss_dssp             CCCCTTCCEEEE
T ss_pred             CCCCCceEEEEE
Confidence             44 37999997

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.38  E-value=1.2e-12  Score=84.40  Aligned_cols=89  Identities=22%  Similarity=0.352  Sum_probs=64.0

Q ss_pred             CCCcccCCCC--ceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCC-ceEEEEeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSD--IIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLN-DRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~--~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .||.|...+.  .....+.+|+++.|.|.+.+     +.|++++....  ...... ........+|.|.+++..|+|.|
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   80 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNY   80 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECC--GGGSTTCCEEEGGGTEEEECSCCGGGCEEE
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcc--cccccccEEEecCeEEEEEccCCcCCCEEE
Confidence            3577775442  25688999999999999987     99999633221  111111 12222345899999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEE
Q psy3045          84 LCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V  102 (267)
                      +|.+.|..|.....+.|.|
T Consensus        81 ~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           81 TCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEEE
Confidence            9999999988777777765

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-12  Score=85.65  Aligned_cols=91  Identities=20%  Similarity=0.237  Sum_probs=69.6

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE---EeeEEEEeecccCCCee
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ---VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~   82 (267)
                      ..+|.|...+  ..+.+.+|+++.|.|.+.+     +.|++++......    .......   ...+|.|.+++.+|+|.
T Consensus         7 ~~~P~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A            7 GFRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD----SAHKMLVRENGVHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CCCCEEEECC--CEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC----SSEEEEECTTSCEEEEESSCCGGGCSB
T ss_pred             CCCCcEEeCC--CcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC----CceEEEEecCCeEEEEEeeCCcccCEE
Confidence            4578898887  7899999999999999987     9999963321110    0111111   12489999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |+|.+.|..|.....+.|.|...+.
T Consensus        81 Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           81 YTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             BCEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEECCCCEEEEEEEEEEeCCCC
Confidence            9999999999888888888887554

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.37  E-value=3.2e-12  Score=81.50  Aligned_cols=77  Identities=29%  Similarity=0.364  Sum_probs=63.7

Q ss_pred             eeEEecCCCeEEEEEEecc---eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE---NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV   99 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   99 (267)
                      ....+.+|+++.|.|.+.+   +.|++++.      .+....++...+..|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus         9 ~~~~v~~G~~~~l~C~~~~~p~v~W~k~g~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   82 (95)
T 4hwu_A            9 EAYVVAPGESLELQCMLKDAAVISWTKDGV------HLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFM   82 (95)
T ss_dssp             EEEEECTTSCEEEECCCCTTCEEEEEETTE------EECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CcEEECCCCEEEEEEEeCCCCEEEEEECCE------ECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEE
Confidence            6789999999999999988   99999632      12233555566779999999999999999999999988888888


Q ss_pred             EEEEec
Q psy3045         100 LTVTAP  105 (267)
Q Consensus       100 l~V~~~  105 (267)
                      |.|.++
T Consensus        83 l~V~~~   88 (95)
T 4hwu_A           83 VNVTDA   88 (95)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            888764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.37  E-value=4.2e-12  Score=80.00  Aligned_cols=58  Identities=21%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+.+|+.+.|.|.+.+ |.+.+.|+|||.++..+.         ...|.|.++..+|+|.|+|.|.|.
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            4568999999999865 778899999999987543         246999999999999999998664

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.6e-12  Score=85.40  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             CCCcccCCC-CceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVS-DIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~-~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y   83 (267)
                      .+|.|.... ....+.+.+|+++.|.|.+.+     +.|++++....     .....+..  ....|.|.++..+|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-----TSRVHVRTSDFDTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-----CSSCEEEECSSEEEEEESSCCTTTCEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-----CCcEEEEECCCeEEEEECCCChhcCEEE
Confidence            367775431 126789999999999999988     99999643221     01111111  245699999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEecc
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      +|.+.|..|.....+.|.|...|
T Consensus        95 ~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           95 ELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEEEEEEEcCC
Confidence            99999999988888888887643

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.36  E-value=4e-12  Score=80.10  Aligned_cols=71  Identities=18%  Similarity=0.338  Sum_probs=50.0

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceE--EEE--eeEEEEeecccCCCeeEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRV--KQV--SGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~   84 (267)
                      ||.|........+.+.+|+++.|.|.+.+    +.|+|++....      ...++  ...  ..+|.|.++..+|+|.|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~p~~~v~W~k~g~~i~------~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVE------ESDFVVLENEGPHRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSCTTSCCEEEETTSCCC------CCSSCEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECCCCcEEEEEECCEEee------eeeeeeEEecCCeEEEEeCCCChhhcEEEE
Confidence            56665554323456679999999999977    99999743221      12222  222  247999999999999999


Q ss_pred             EEEEc
Q psy3045          85 CVVNN   89 (267)
Q Consensus        85 C~~~~   89 (267)
                      |.|.|
T Consensus        78 C~a~n   82 (91)
T 2lvc_A           78 CVAGD   82 (91)
T ss_dssp             EECSS
T ss_pred             EEEcc
Confidence            99854

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=4.3e-12  Score=82.17  Aligned_cols=79  Identities=19%  Similarity=0.381  Sum_probs=62.2

Q ss_pred             CcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       134 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....         ...|.|.++..+|+|.|+|.+.|  
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--   84 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--   84 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--
Confidence            333444555678999999999999987 778899999998885432         23699999999999999999998  


Q ss_pred             CCceEEEEEEEec
Q psy3045         205 ESAQASGELKLGG  217 (267)
Q Consensus       205 ~~~~~~~~l~v~~  217 (267)
                        ...++.|.|..
T Consensus        85 --~~~~~~l~V~~   95 (103)
T 2edf_A           85 --SKSTASLHVEE   95 (103)
T ss_dssp             --CEEEEEEEECC
T ss_pred             --CCcEEEEEEeC
Confidence              25566677754

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.35  E-value=1.9e-12  Score=97.23  Aligned_cols=119  Identities=14%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             EEEecCCCEEEEeEeCCCC----CceEEEEECCc--cC------C------C---------------------CCCCeEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNP----VKTISWMKDGK--PV------P------D---------------------HNEPVFR  184 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p----~~~~~W~~~~~--~~------~------~---------------------~~~~~l~  184 (267)
                      ..+.+|++++|.|.+.+.+    ...+.|++...  .+      .      .                     .....|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   89 (239)
T 3tv3_H           10 TLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK   89 (239)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence            3788899999999987654    44899998421  10      0      0                     1123599


Q ss_pred             eccCCCCCCeEEEEEEEcCCC-------------CceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecC-C
Q psy3045         185 IDSVRKEDKGMYQCVIRNEQE-------------SAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-P  249 (267)
Q Consensus       185 i~~~~~~d~g~y~C~~~~~~~-------------~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p  249 (267)
                      |.+++.+|+|.|.|.+.+..+             .......+.|. ....+|.+........+..|+.+.|.|.+.+. |
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence            999999999999999986531             01112245553 22345666644444455679999999999984 4


Q ss_pred             CC-cEEEEECCEEc
Q psy3045         250 TP-EISWYLDGKKL  262 (267)
Q Consensus       250 ~~-~i~W~~~~~~l  262 (267)
                      ++ .+.|+++|..+
T Consensus       170 ~~~~v~W~~~g~~~  183 (239)
T 3tv3_H          170 EPVTVSWNSGALTS  183 (239)
T ss_dssp             SCCEEEEGGGTBCT
T ss_pred             CCeEEEEEECCccC
Confidence            44 58899998643

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=5.3e-12  Score=81.86  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      ..+|.|...+  .+..+.+|++++|.|.+.+      +.|++++....      ...++..    ...+|.|.+++.+|+
T Consensus         6 ~~p~~~~~~~--~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~------~~~r~~~~~~~~~~~L~I~~v~~~D~   77 (104)
T 2eny_A            6 SGHVGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG------SSSRFQATRQGRKYILVVREAAPSDA   77 (104)
T ss_dssp             CCCCCCSBCC--CCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCS------BCSSCEEEEETTEEEEEECSCCTTTC
T ss_pred             cCCCEEEecC--CCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECC------CCCCEEEEEcCCEEEEEECCCCHHHC
Confidence            3457787777  7899999999999999886      88999643221      1222222    234799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.|+|.+.+    ......|.|..++.
T Consensus        78 G~Y~C~a~~----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           78 GEVVFSVRG----LTSKASLIVRERSG  100 (104)
T ss_dssp             SCEEEEETT----EEEEECEEEECCCS
T ss_pred             EEEEEEECC----eeEEEEEEEeCCCc
Confidence            999999843    45677888877543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.35  E-value=1.9e-12  Score=96.67  Aligned_cols=117  Identities=13%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             EEecCCCEEEEeEeCCCC--Cce--EEEEECCc--cC--------CC----------------------CCCCeEEeccC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKT--ISWMKDGK--PV--------PD----------------------HNEPVFRIDSV  188 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~--~~W~~~~~--~~--------~~----------------------~~~~~l~i~~~  188 (267)
                      .+.+|++++|.|...+.+  ...  +.|++...  ..        ..                      .....|.|.++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (232)
T 3qhz_H           11 LVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNM   90 (232)
T ss_dssp             EECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             EECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcC
Confidence            688899999999987542  233  49997421  00        00                      11235999999


Q ss_pred             CCCCCeEEEEEEEcCC--------CCceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCCC--cEEEEE
Q psy3045         189 RKEDKGMYQCVIRNEQ--------ESAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYL  257 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~--------~~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~  257 (267)
                      +.+|+|.|.|.+.+..        ........+.|. ....+|.+........+..|+.+.|.|.+.+.+++  .+.|++
T Consensus        91 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~  170 (232)
T 3qhz_H           91 DPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  170 (232)
T ss_dssp             CGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEE
Confidence            9999999999998752        111223345554 22346666643334456679999999999985543  688999


Q ss_pred             CCEE
Q psy3045         258 DGKK  261 (267)
Q Consensus       258 ~~~~  261 (267)
                      +|..
T Consensus       171 ~g~~  174 (232)
T 3qhz_H          171 GALT  174 (232)
T ss_dssp             GTBC
T ss_pred             CCEe
Confidence            9864

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=82.53  Aligned_cols=85  Identities=21%  Similarity=0.296  Sum_probs=64.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCee
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~   82 (267)
                      ..||.|...+  .+..+.+|+++.|.|.+.+    +.|++++...      ....++...    ...|.|.+++.+|+|.
T Consensus         6 ~~pp~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (103)
T 2edf_A            6 SGPAAIIKPL--EDQWVAPGEDVELRCELSRAGTPVHWLKDRKAI------RKSQKYDVVCEGTMAMLVIRGASLKDAGE   77 (103)
T ss_dssp             CCCCCEEECC--CCEEECTTSCEEECCEESSSSCCCCEEESSCBC------CCSSSEEEEEETTEEEEEESSCCTTTCSE
T ss_pred             CCCcEEEecC--CccEEcCCCCEEEEEEEeCCCCcEEEEECCEEc------cCCCCEEEEECCCEEEEEECCCCcccCEE
Confidence            3467887777  6899999999999999987    9999964322      122233322    3479999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          83 YLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |+|.+.|    ....+.|.|...+.
T Consensus        78 Y~C~a~n----~~~~~~l~V~~~p~   98 (103)
T 2edf_A           78 YTCEVEA----SKSTASLHVEEKAS   98 (103)
T ss_dssp             EEEECSS----CEEEEEEEECCCSS
T ss_pred             EEEEEcc----CCcEEEEEEeCCCC
Confidence            9999988    36677777776554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=2.1e-12  Score=102.92  Aligned_cols=102  Identities=18%  Similarity=0.289  Sum_probs=63.2

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      .++.+.+|+++.|.|.+.+    +.|++++.....  ......++...+++|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus       254 ~~v~v~~G~~~~l~C~~~gp~p~i~W~~~~~~~~~--~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~  331 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL--SQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSV  331 (361)
T ss_dssp             CCCEEETTCCEEECCCCSSTTCEEEEECTTSCBCC--SCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred             cCceecCCCeEEEEeEeeCCCCeEEEEeCCCeeEe--ecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEE
Confidence            5679999999999999987    999995332111  1112234444667899999999999999999999988888888


Q ss_pred             EEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceE
Q psy3045          99 VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI  166 (267)
Q Consensus        99 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~  166 (267)
                      .+.|...                                        ...|+.+.|.|.+.|.|.|.+
T Consensus       332 ~l~V~~~----------------------------------------~~~g~~~~l~C~~~g~P~P~i  359 (361)
T 2xot_A          332 ELKVYNF----------------------------------------TLHGHHDTLNAAADPWSHPQF  359 (361)
T ss_dssp             EEEEESS----------------------------------------CCC------------------
T ss_pred             EEEEEee----------------------------------------eccCCceEEEEEeCCCCCCcc
Confidence            8888542                                        134778999999999988865

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.34  E-value=2.4e-12  Score=97.19  Aligned_cols=119  Identities=15%  Similarity=0.319  Sum_probs=76.1

Q ss_pred             eEEEecCCCEEEEeEeCCC--CCceEEEEECCcc--C------C-C---------------------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGN--PVKTISWMKDGKP--V------P-D---------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~~--~------~-~---------------------~~~~~l~i~~~~~  190 (267)
                      ...+.+|++++|.|...+.  +...+.|++....  +      . .                     .....|.|.+++.
T Consensus         8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (248)
T 3u2s_H            8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV   87 (248)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence            3478899999999998753  3568999974211  0      0 0                     0123599999999


Q ss_pred             CCCeEEEEEEEcCCC----------------------CceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeec
Q psy3045         191 EDKGMYQCVIRNEQE----------------------SAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASG  247 (267)
Q Consensus       191 ~d~g~y~C~~~~~~~----------------------~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  247 (267)
                      +|+|.|.|.+.+..+                      .......+.|. ....+|.+........+..|+.+.|.|.+.+
T Consensus        88 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~  167 (248)
T 3u2s_H           88 EDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  167 (248)
T ss_dssp             GGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEE
T ss_pred             HHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEee
Confidence            999999999986410                      11112345554 2234566664444445567999999999997


Q ss_pred             C-C-CCcEEEEECCEE
Q psy3045         248 N-P-TPEISWYLDGKK  261 (267)
Q Consensus       248 ~-p-~~~i~W~~~~~~  261 (267)
                      . | ++.+.|+++|..
T Consensus       168 ~~P~~~~v~W~~~g~~  183 (248)
T 3u2s_H          168 YFPEPVTVSWNSGALT  183 (248)
T ss_dssp             EBSSCCEEEEGGGTBC
T ss_pred             EECCCeEEEEeECCcc
Confidence            4 4 247999999864

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.34  E-value=9.7e-12  Score=80.03  Aligned_cols=86  Identities=19%  Similarity=0.310  Sum_probs=63.2

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCe
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      +..+|.|...+. ....+.+|+++.|.|.+..    +.|++++....      ...++..    ....|.|.+++.+|+|
T Consensus         4 g~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~p~~~v~W~k~g~~i~------~~~~~~~~~~~~~~~L~I~~~~~~D~G   76 (100)
T 2yuv_A            4 GSSGAAFAKILD-PAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIR------PSTKYIFEHKGCQRILFINNCQMTDDS   76 (100)
T ss_dssp             SSSSCCEEECCC-SCEEECTTEEEEEEEEESCTTSCEEEEESSCBCC------CBTTEEEEEETTEEEEEEEEECTTTCC
T ss_pred             CCCCCeEEecCC-CccEEcCCCcEEEEEEecCCCceEEEEECCEECC------CCCCEEEEecCCEEEEEEcCCCcCcCE
Confidence            446788987772 2378999999999999876    99999643221      1223222    1247999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEecc
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      .|+|.+    +.......|.|..++
T Consensus        77 ~Y~C~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           77 EYYVTA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EEEEEE----TTEEEEEEEEECCSC
T ss_pred             EEEEEE----CCceEEEEEEEecCC
Confidence            999999    556777788887654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.34  E-value=1.5e-11  Score=78.39  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE--E--EeeEEEEeecccCCCee
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK--Q--VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~--~--~~~~l~i~~~~~~d~G~   82 (267)
                      ...|.|...+  .+..+.+|+++.|.|.+..    +.|++++...  .    ...++.  .  ...+|.|.+++.+|+|.
T Consensus         6 ~~~~~~~~~~--~~~~v~~G~~v~l~C~~~~p~~~v~W~k~~~~l--~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (95)
T 2k1m_A            6 KPVSAFSKKP--RSVEVAAGSPAVFEAETERAGVKVRWQRGGSDI--S----ASNKYGLATEGTRHTLTVREVGPADQGS   77 (95)
T ss_dssp             CCCCCCSBCC--CCEEEETTSCEEEEEECSSSSCCCEEECSSSEE--C----SSTTCEEEEETTEEEEEESSCCTTCCSE
T ss_pred             CCCCeeEeCC--CcEEEeCCCcEEEEEEeCCCCCeEEEEECCEEC--C----CCCcEEEEEcCCEEEEEEcCCCcccCEE
Confidence            3457888777  7899999999999999944    9999963321  1    112222  1  22479999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEE
Q psy3045          83 YLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      |+|.+    |.......|.|.
T Consensus        78 Y~C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           78 YAVIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EEEEE----TTEEEEEEEEEE
T ss_pred             EEEEE----CCceEEEEEEEe
Confidence            99999    445566666664

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=5.7e-12  Score=81.75  Aligned_cols=69  Identities=16%  Similarity=0.330  Sum_probs=56.7

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ..+.+|+.+.|.|.+.+.|.+ +.|++++..+...         ....|.|.++..+|+|.|+|.+.|..+    .+.+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~----~~~l~   94 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA----FFGVT   94 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC----CEEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE----EEEEE
Confidence            578899999999999999888 9999999887643         234799999999999999999998743    44555


Q ss_pred             Eec
Q psy3045         215 LGG  217 (267)
Q Consensus       215 v~~  217 (267)
                      |..
T Consensus        95 V~~   97 (104)
T 2e6p_A           95 VQD   97 (104)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.33  E-value=5e-12  Score=83.00  Aligned_cols=81  Identities=27%  Similarity=0.503  Sum_probs=62.1

Q ss_pred             cccccCCceEEEecCCCEEEEeEeCCC--CCceEEEEECCccCCCCC-----------------CCeEEeccCCCCCCeE
Q psy3045         135 LAAGVEPTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDGKPVPDHN-----------------EPVFRIDSVRKEDKGM  195 (267)
Q Consensus       135 ~~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~~~~~~~-----------------~~~l~i~~~~~~d~g~  195 (267)
                      +.+...+....+.+|+.+.|.|.+.+.  +.+.+.|++++..+....                 ...|.|.++..+|+|.
T Consensus        11 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   90 (112)
T 3so5_A           11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGX   90 (112)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEE
T ss_pred             CeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCe
Confidence            334444556688999999999998854  467999999998775431                 3689999999999999


Q ss_pred             EEEEEEcCCCCc-eEEEEEEE
Q psy3045         196 YQCVIRNEQESA-QASGELKL  215 (267)
Q Consensus       196 y~C~~~~~~~~~-~~~~~l~v  215 (267)
                      |+|.|.|..|.. ...+.|.|
T Consensus        91 Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           91 YQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEeCCCcEEEeEEEEEe
Confidence            999999988763 34444443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.32  E-value=3.5e-11  Score=85.70  Aligned_cols=119  Identities=15%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEE--CCccC-CC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPV-PD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~--~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +....+.+|+++.|.|.+....+..+.|.-  ++..+ .. .....|.|.+++.  .|.|.|.+.......+....+.|.
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~--~g~y~C~~~c~~~~~~~~~~l~V~   83 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPDGQSTAKTFLTVY   83 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS--CBCCEEEEECSSCEEEEECEEEEE
T ss_pred             CCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCc--CCEEEEEEECCCCceEEEEEEEEe
Confidence            344578999999999998643333466642  11112 11 1225688888873  399999997765555556666665


Q ss_pred             cccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEEEECCEEcC
Q psy3045         217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLDGKKLV  263 (267)
Q Consensus       217 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~l~  263 (267)
                      .  .|..+.+.+....+.+|+.++|.|.+.|..++   .|.|||+++.+.
T Consensus        84 ~--~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~  131 (185)
T 1iam_A           84 W--TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK  131 (185)
T ss_dssp             B--CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             C--CCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcc
Confidence            3  45556666655568999999999999985554   489999999875

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=84.78  Aligned_cols=89  Identities=21%  Similarity=0.228  Sum_probs=60.4

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeE
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y   83 (267)
                      ...||.|...+  .+..+.+|+++.|.|.+.+    +.|++++............-++..  ....|.|.++..+|+|.|
T Consensus         5 ~~~p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   82 (101)
T 2edk_A            5 SSGPVLIVTPL--EDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY   82 (101)
T ss_dssp             CCCCCCEEECC--CCEEEESSCCCBCCEEESCSSCCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBE
T ss_pred             ccCCCEEEecC--CceEEcCCCCEEEEEEEeCCCCEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEE
Confidence            34567888777  6899999999999999988    999996432211110000112222  234799999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEe
Q psy3045          84 LCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|.+.|    ......|.|.+
T Consensus        83 ~C~a~n----~~~~~~l~V~~   99 (101)
T 2edk_A           83 QVITNG----GQCEAELIVEE   99 (101)
T ss_dssp             EEECSS----CEECCBEEEEC
T ss_pred             EEEEcC----CcEEEEEEEeC
Confidence            999976    33444566654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.32  E-value=5.9e-12  Score=82.00  Aligned_cols=78  Identities=26%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             ccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       136 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+....         ...|.|.++..+|+|.|+|.|.|..  
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~--   86 (106)
T 2dlt_A           10 EVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA--   86 (106)
T ss_dssp             CEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSC--
T ss_pred             EEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCC--
Confidence            34445566789999999999999988877 99999998876432         2479999999999999999999983  


Q ss_pred             ceEEEEEEEe
Q psy3045         207 AQASGELKLG  216 (267)
Q Consensus       207 ~~~~~~l~v~  216 (267)
                      ...+..+.|.
T Consensus        87 ~~~~~~l~V~   96 (106)
T 2dlt_A           87 LSLSAKLNFL   96 (106)
T ss_dssp             CCCCBCEEEE
T ss_pred             ceEEEEEEEE
Confidence            3334445543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=78.84  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=59.5

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE--E--eeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ--V--SGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      .+..+.+|+++.|.|.+.+      +.|++++..      +....++..  .  ...|.|.+++.+|+|.|+|.+.|..|
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQ------LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEE------CCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEE------CcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            6889999999999999885      999996331      112233322  2  23899999999999999999999999


Q ss_pred             ccEEEEEEEEEe
Q psy3045          93 GESVETVLTVTA  104 (267)
Q Consensus        93 ~~~~~~~l~V~~  104 (267)
                      .....+.|.|.+
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            888888887754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.32  E-value=2e-11  Score=79.73  Aligned_cols=84  Identities=25%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc---eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeE
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE---NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..||.|...+  .+..+.+|+++.|.|.+.+   +.|++++...      ....++..    ....|.|.+++.+|+|.|
T Consensus         6 ~~pp~~~~~~--~~~~v~~G~~v~l~C~~~~~p~v~W~k~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (108)
T 2dm7_A            6 SGPARFTQDL--KTKEASEGATATLQCELSKVAPVEWKKGPETL------RDGGRYSLKQDGTRCELQIHDLSVADAGEY   77 (108)
T ss_dssp             CCCCCBCSCC--BCCEEETTSCEEEEEEBSSSCCCEEESSSSBC------CSSSSCEEEEETTEEEEEESSCCTTTCSEE
T ss_pred             CCCCeeeecC--CcEEEeCCCcEEEEEEeCCCCeeEEEECCEEC------CCCCCEEEEecCCEEEEEECCCCcccCEEE
Confidence            4578898877  7899999999999999988   9999964321      11223222    123699999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEecc
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      +|.+.    .......|.|...+
T Consensus        78 ~C~a~----n~~~~~~l~V~~~p   96 (108)
T 2dm7_A           78 SCMCG----QERTSATLTVRALP   96 (108)
T ss_dssp             EEEET----TEEEEEECEEECCC
T ss_pred             EEEEc----CCEEEEEEEEecCC
Confidence            99993    34666777777644

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.32  E-value=6.4e-12  Score=82.47  Aligned_cols=90  Identities=20%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec-----cccC-CceEEEEeeEEEEeeccc
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-----AVPL-NDRVKQVSGTLIIKEAKV   77 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-----~~~~-~~~~~~~~~~l~i~~~~~   77 (267)
                      ..+|.|...+  ....+.+|++++|.|.+.+       +.|++++.......     .... ..........|.|.+++.
T Consensus         8 ~~~P~i~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            8 FPXPQITVQP--ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             CCSCEEEECC--CCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCCeEEeCC--CCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccc
Confidence            3468888877  6789999999999999883       89999643211100     0000 011122347899999999


Q ss_pred             CCCeeEEEEEEcCCCc-cEEEEEEEE
Q psy3045          78 EDSGKYLCVVNNSVGG-ESVETVLTV  102 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~-~~~~~~l~V  102 (267)
                      .|+|.|+|.+.|..|. .+..+.|.|
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999999887 445666655

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-12  Score=82.05  Aligned_cols=82  Identities=23%  Similarity=0.319  Sum_probs=61.1

Q ss_pred             ccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCee
Q psy3045           8 PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus         8 ~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +.+..+|.|...+  ....+.+|+++.|.|.+.+     +.|++++....      ..     .+..|.|.+++.+|+|.
T Consensus         5 ~~~~~~~~i~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~------~~-----~~~~L~i~~v~~~d~G~   71 (96)
T 2ens_A            5 SSGLEEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP------LP-----PSPVLILPEIGPQDQGT   71 (96)
T ss_dssp             CCCCCSCCCEEES--TTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCS------SC-----CCSEEEEESCCTTTCEE
T ss_pred             CCCCCCCEEEECC--CCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECc------CC-----CCCEEEECCCCcccCEE
Confidence            3456678888777  6778999999999999987     99999633211      11     24589999999999999


Q ss_pred             EEEEEEcCCCccE--EEEEEEE
Q psy3045          83 YLCVVNNSVGGES--VETVLTV  102 (267)
Q Consensus        83 Y~C~~~~~~~~~~--~~~~l~V  102 (267)
                      |+|.+.|..+...  ..+.|.|
T Consensus        72 Y~C~a~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           72 YSCVATHSSHGPQESRAVSISI   93 (96)
T ss_dssp             EECEECCSSCCCEECCCEEEEE
T ss_pred             EEEEEEeCCCCcEEEEEEEEEE
Confidence            9999999766533  3344444

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6e-12  Score=83.23  Aligned_cols=76  Identities=17%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..+          ....|.|.++..+|+|.|+|.+    +.
T Consensus        16 ~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~   91 (115)
T 2cr6_A           16 IIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GD   91 (115)
T ss_dssp             EEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TT
T ss_pred             EeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CC
Confidence            334455668999999999999999998999999999876432          2347999999999999999994    44


Q ss_pred             ceEEEEEEEe
Q psy3045         207 AQASGELKLG  216 (267)
Q Consensus       207 ~~~~~~l~v~  216 (267)
                      ...++.|.|.
T Consensus        92 ~~~~~~L~V~  101 (115)
T 2cr6_A           92 QRASAALRVT  101 (115)
T ss_dssp             EECCEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            4556677776

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.2e-12  Score=81.17  Aligned_cols=78  Identities=19%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      ..+.+.+|+++.|.|.+.+    +.|++++..      +....++...+..|.|.+++..|+|.|+|.+.|..|.....+
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~pp~i~W~k~g~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   84 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQ------LAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYF   84 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSCCEEEEEESSSB------CCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             cCeEEeCCCcEEEEEEecCCCCeEEEEECCEE------CCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence            6778999999999999987    999996421      222334444567899999999999999999999998887777


Q ss_pred             EEEEEecc
Q psy3045          99 VLTVTAPL  106 (267)
Q Consensus        99 ~l~V~~~~  106 (267)
                      .|.|...+
T Consensus        85 ~l~V~~~~   92 (99)
T 2cr3_A           85 SVNVSDAL   92 (99)
T ss_dssp             EECBCSCC
T ss_pred             EEEEecCC
Confidence            77776543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=82.90  Aligned_cols=78  Identities=21%  Similarity=0.377  Sum_probs=60.3

Q ss_pred             CcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-------------CCeEEeccCCCCCCeEEEEEE
Q psy3045         134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------------EPVFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       134 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------------~~~l~i~~~~~~d~g~y~C~~  200 (267)
                      ++.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+....             ...|.|.++..+|+|.|+|.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            33344455567899999999999999888 8999999998876543             136999999999999999999


Q ss_pred             EcCCCCceEEEEEEEe
Q psy3045         201 RNEQESAQASGELKLG  216 (267)
Q Consensus       201 ~~~~~~~~~~~~l~v~  216 (267)
                      .|.    ..+..+.|.
T Consensus        87 ~n~----~~~~~l~V~   98 (101)
T 2edk_A           87 NGG----QCEAELIVE   98 (101)
T ss_dssp             SSC----EECCBEEEE
T ss_pred             cCC----cEEEEEEEe
Confidence            872    334445554

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.31  E-value=2e-11  Score=80.41  Aligned_cols=84  Identities=29%  Similarity=0.362  Sum_probs=63.7

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc---eeeeecccCcceeccccCCceEEEE-e---eEEEEeecccCCCeeEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE---NMWFKFIEGSSRKVAVPLNDRVKQV-S---GTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~d~G~Y~   84 (267)
                      .||.|...+  .+..+.+|+++.|.|.+.+   +.|++++...      ....++... +   ..|.|.+++.+|+|.|+
T Consensus        18 ~pp~~~~~~--~~~~v~~G~~v~l~C~~~~~p~v~W~k~~~~l------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
T 2edh_A           18 LPIKFTEGL--RNEEATEGATAVLRCELSKMAPVEWWKGHETL------RDGDRHSLRQDGARCELQIRGLVAEDAGEYL   89 (113)
T ss_dssp             SCCCEEECC--CCCEECTTSCEEEEEEESSCCCCEEEESSSBC------CCSSSEEEEEETTEEEEEECSCCSTTCEEEE
T ss_pred             CCCcccccC--CceEEeCCCeEEEEEEECCCCcEEEEECCEEC------CCCCcEEEEECCCEEEEEECCCChhhCEEEE
Confidence            356887766  6889999999999999988   9999964321      222333322 2   37999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccc
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.+    +.......|.|...+.
T Consensus        90 C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           90 CMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             EEE----TTEEEEEEEEECCCCC
T ss_pred             EEe----CCCCEEEEEEEeCCCC
Confidence            999    5667778888876554

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-11  Score=79.64  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             CCcccccCCceEEEecCCCEEEEeEeCCCCC-ceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEc
Q psy3045         133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      ++..+...+....+.+|+.+.|.|.+.+.|. +.+.|+++|..+..+.         ...|.|.++..+|+|.|+|.+.+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            3444555666778999999999999998774 4899999999886432         24799999999999999999854


Q ss_pred             CCCCceEEEEEEEec
Q psy3045         203 EQESAQASGELKLGG  217 (267)
Q Consensus       203 ~~~~~~~~~~l~v~~  217 (267)
                          ...++.|.|..
T Consensus        87 ----~~~~a~L~V~~   97 (104)
T 2eny_A           87 ----LTSKASLIVRE   97 (104)
T ss_dssp             ----EEEEECEEEEC
T ss_pred             ----eeEEEEEEEeC
Confidence                35667777763

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.30  E-value=4.9e-12  Score=78.40  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=53.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      .++.+.+|+++.|.|.+.+    +.|+|++..      +....++..    ....|.|.+++.+|+|.|+|.|.+    .
T Consensus         4 t~v~~~~G~~v~l~C~vs~p~p~v~W~k~g~~------l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~   73 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSGPGGPVRWYKDGER------LASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----D   73 (84)
T ss_dssp             CCEEECTTSCEEEECCCSCCSTTCEEEETTEE------CCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----T
T ss_pred             eEEEEecCCCEEEEEEECCCCcEEEEEECCEE------ccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----E
Confidence            5789999999999999977    999996432      122233322    234799999999999999999743    4


Q ss_pred             EEEEEEEEEe
Q psy3045          95 SVETVLTVTA  104 (267)
Q Consensus        95 ~~~~~l~V~~  104 (267)
                      ...+.|.|.+
T Consensus        74 ~~~a~l~V~e   83 (84)
T 2lu7_A           74 SRIFLVSVEE   83 (84)
T ss_dssp             CEEEEEEECC
T ss_pred             EEEEEEEEEC
Confidence            5666777654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.30  E-value=4.4e-11  Score=104.07  Aligned_cols=177  Identities=17%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             CCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccC-CCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          29 GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE-DSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        29 ~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      .+.++.|.|.+.+     +.|.+++....       .    .....+.|..+... .++.|.|.+.+..|..... .+.+
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~-------~----~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~  157 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTR-------T----WNRAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKV  157 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCS-------S----CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEE
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCC-------c----eeEEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEe
Confidence            3568999999988     99999643211       0    01224555544222 2478888776666542211 1112


Q ss_pred             EeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEE-EE--ECCccCCCC-
Q psy3045         103 TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS-WM--KDGKPVPDH-  178 (267)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~-W~--~~~~~~~~~-  178 (267)
                      ..... .                      .+|. +. .+.+..+..|+++.|.|.+.|.|.+.+. |+  +++..+... 
T Consensus       158 ~~~~~-~----------------------~~p~-~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~  212 (731)
T 2v5y_A          158 LGHPC-T----------------------RTPH-FL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE  212 (731)
T ss_dssp             ESSCC-S----------------------SSCE-EC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE
T ss_pred             eeccc-c----------------------cccc-cc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc
Confidence            11100 0                      0111 11 2335588899999999999999988887 77  577665321 


Q ss_pred             --------CCCeEEeccCCCCCCeEEEEEEEcCCCC-ceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee
Q psy3045         179 --------NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS  246 (267)
Q Consensus       179 --------~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  246 (267)
                              ....|.|.++...|.|.|+|.|.|..|. ......+.+..   +|.....+... ......+.|.|...
T Consensus       213 ~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~---~P~~~~~p~~~-~~~~~~v~l~w~~~  285 (731)
T 2v5y_A          213 IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE---PPVPIAPPQLA-SVGATYLWIQLNAN  285 (731)
T ss_dssp             EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEEC---CCCBSSCCEEE-EECSSCEEEECCCS
T ss_pred             eEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEec---CCCCCCCccee-ccCCceEEEEeCCc
Confidence                    1358999999999999999999999886 45556676653   44333333222 23456788888763

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.30  E-value=6.5e-12  Score=85.81  Aligned_cols=72  Identities=26%  Similarity=0.494  Sum_probs=59.7

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------------------CCCeEEeccCCCCCCe
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------------------NEPVFRIDSVRKEDKG  194 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~~~~d~g  194 (267)
                      +...+....+.+|+++.|.|.+.+.|.+.+.|++++..+...                      ....|.|.++..+|+|
T Consensus        24 ~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  103 (137)
T 3qr2_A           24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTG  103 (137)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCE
T ss_pred             EEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCE
Confidence            334455668889999999999999999999999988765321                      2358999999999999


Q ss_pred             EEEEEEEcCCCCce
Q psy3045         195 MYQCVIRNEQESAQ  208 (267)
Q Consensus       195 ~y~C~~~~~~~~~~  208 (267)
                      .|+|.|.|..|...
T Consensus       104 ~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A          104 TYECRASNDPDRNH  117 (137)
T ss_dssp             EEEEEEECCTTSSS
T ss_pred             EEEEEEEecCCccc
Confidence            99999999988764

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.30  E-value=3.7e-11  Score=76.48  Aligned_cols=75  Identities=20%  Similarity=0.377  Sum_probs=58.9

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..+.         ...|.|.++..+|+|.|+|.+    +..
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~   85 (95)
T 2k1m_A           11 FSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSS   85 (95)
T ss_dssp             CSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTE
T ss_pred             eEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCc
Confidence            3445566789999999999999 77888999999998875432         246999999999999999999    344


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.|.|.
T Consensus        86 ~~~~~l~V~   94 (95)
T 2k1m_A           86 KVKFDLKVI   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            555666553

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.30  E-value=3.1e-10  Score=82.66  Aligned_cols=171  Identities=19%  Similarity=0.257  Sum_probs=97.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE------eeEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ...+.+|+++.|.|.+.+       +.|.+...+...             ........|+...      ...|.+.+++.
T Consensus         9 ~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~   88 (254)
T 4f9p_D            9 AEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTS   88 (254)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCC
Confidence            457899999999999988       788886433321             1112234454332      13588999999


Q ss_pred             CCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE
Q psy3045          78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK  157 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  157 (267)
                      +|++.|+|........--.-+.++|.....  ..+.......+      +.........+...+....+.+|+.++|.|.
T Consensus        89 eDTAvYYCAr~~~~d~WGqGT~VTVSSast--~~ps~~~l~~~------~sgGSgsdivltQsP~slsvs~G~~vtlsC~  160 (254)
T 4f9p_D           89 DDSAVYFCARSDYGAYWGQGTLVTVSAAGG--GGSGGGGSGGG------GSGGGGSDIVLTQSPVTLSVTPGDSVSLSCR  160 (254)
T ss_dssp             GGCEEEECEESSSCCEECCCEEEEECC---------------------------CCSCCEEEECSEEEECTTCEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCcCCCEEEEEeCCCC--cCCCCCCCccc------cccccccccccccCCceeEEcCCCcEeeEEE
Confidence            999999997643221111223444432111  00000000000      0000111122334456668899999999999


Q ss_pred             eCCCCCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         158 YEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       158 ~~~~p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      ++..-...+.||+.  |+...                     .+...+|+|..++.+|.+.|.|...+
T Consensus       161 ~S~~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~  228 (254)
T 4f9p_D          161 ASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSN  228 (254)
T ss_dssp             ESSCCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECS
T ss_pred             ccCcccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecC
Confidence            87554446889873  22210                     01224699999999999999997543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=8.9e-12  Score=80.81  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=60.7

Q ss_pred             cCCCcccCCCCc-eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeE
Q psy3045          11 FKAPTFSSVSDI-IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        11 ~~~P~~~~~~~~-~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+|.+...+.. ..+.+.+|+++.|.|.+.+    +.|++++.....  .  ...++..  ....|.|.+++.+|+|.|
T Consensus         5 ~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~v~W~k~g~~~~~--~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEE--S--ELLVVKMDGRKHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             CSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCCCEEEETTEECCC--B--TTBEEEEETTEEEEEESSCCTTTCEEE
T ss_pred             CCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCccEEeeCCEECCC--C--CCEEEEeCCCEEEEEECCCChhhCEEE
Confidence            446777666621 1278999999999999988    999996432111  1  1111221  235799999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEeccc
Q psy3045          84 LCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      +|.+.|..+    .+.|.|.+++.
T Consensus        81 ~C~a~n~~~----~~~l~V~~~P~  100 (104)
T 2e6p_A           81 ECRTEGVSA----FFGVTVQDPSG  100 (104)
T ss_dssp             EEECSSCCC----CEEEEEECCCC
T ss_pred             EEEECCceE----EEEEEEcCCCC
Confidence            999988643    45667766543

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.29  E-value=4e-11  Score=87.77  Aligned_cols=167  Identities=19%  Similarity=0.320  Sum_probs=95.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+..|++|+|.|....     +.|++...+......+.        ..+|+..    +..+|+|..++.+|++.|.|
T Consensus         9 ~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~A~YyC   88 (259)
T 4f9l_D            9 SSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDIATYYC   88 (259)
T ss_dssp             SBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhCEEEEE
Confidence            5778899999999998755     88998755543322221        2234543    23479999999999999999


Q ss_pred             EEEcCCCcc-EEEEEEEEEec---cccc-cCCceEEEe--CCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe
Q psy3045          86 VVNNSVGGE-SVETVLTVTAP---LAAG-VEPTVQTID--FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY  158 (267)
Q Consensus        86 ~~~~~~~~~-~~~~~l~V~~~---~~~~-~~~~~~~~~--~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  158 (267)
                      ...+..... -.-+.|.|...   +... ..+......  ....++|             .+..-..+.+|++++|.|.+
T Consensus        89 ~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL-------------~eSG~~lvkPG~Sl~LSC~a  155 (259)
T 4f9l_D           89 QQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQL-------------QESGAELVKPGASVKLSCKA  155 (259)
T ss_dssp             EECSSSSCCBCCCCEECBCCC----------------------CCCE-------------EEECCCEEESSSCEEEEEEE
T ss_pred             eecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceE-------------EeECCCEECCCCcEEEEEee
Confidence            876443110 00112222210   0000 000000000  0001111             11112268889999999999


Q ss_pred             CCCC--CceEEEEEC--CccC------C-C---------------------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         159 EGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       159 ~~~p--~~~~~W~~~--~~~~------~-~---------------------~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .|+.  .-.+.|+|.  |+-+      . .                     .+...|.+..++.+|.+.|.|....
T Consensus       156 SG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~~  231 (259)
T 4f9l_D          156 SGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRED  231 (259)
T ss_dssp             ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eCCCcccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEeC
Confidence            9875  346889873  2221      1 0                     0123577889999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.004
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.003
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	7e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.003
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.004
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	7e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.004
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.003
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	0.002
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	8e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-05
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	2e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	4e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.004
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	8e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	9e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-04
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	1e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	8e-04
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	5e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	6e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	6e-04
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	7e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	8e-04
d1jbja2	100	b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fra	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.004
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 5e-13
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
           +E  +  +      +F C   GNP+ T+ W+K+GK              +      ++SV
Sbjct: 10  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 69

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
              DKG Y CV+ NE  S   +  L 
Sbjct: 70  VPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 28  PGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82
           P   +    C A  N      W K  +   ++  +       Q   +LI++     D G 
Sbjct: 18  PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPSDKGN 76

Query: 83  YLCVVNNSVGGESVETVLTV 102
           Y CVV N  G  +    L V
Sbjct: 77  YTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            +      E      +       F+C A GNP P + W  +GK+     R
Sbjct: 3   YWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 51

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
            P  Q +  G   +   K  G    T +WMK  K +            N     I + R+
Sbjct: 6   FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ 65

Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
           E  G Y  ++ N+  S QA   L +  + DPP
Sbjct: 66  EHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           GES  L  +          W KF +       + + +   +    L I  A+ E  G Y 
Sbjct: 15  GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS--ENGSKLTILAARQEHCGCYT 72

Query: 85  CVVNNSVGGESVETVLTVTAP 105
            +V N +G    +  LTV   
Sbjct: 73  LLVENKLGSRQAQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
           P I +   D+ +  G +       +G      +W    K++
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI 41

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.5 bits (133), Expect = 6e-11
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----EPVFRIDS 187
           S P        V  +  G+     CK  G P   + W  + KP+        +    I  
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKG 60

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELK 214
           V+  DKG Y C   NE         ++
Sbjct: 61  VKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.7 bits (110), Expect = 9e-08
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 13  APTFSSV-SDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLI 71
           AP +      +I  K+  G+   + C+         +   S         R       L+
Sbjct: 2   APKYEQKPEKVIVVKQ--GQDVTIPCKVTGLPAPNVV--WSHNAKPLSGGRATVTDSGLV 57

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
           IK  K  D G Y C   N  G +  ET++ V
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
           P   ++      +  G +    C  +G P P + W  + K
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 42

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRK 190
             PT Q    G  A   C    +   TI W   G+ V                +I  ++K
Sbjct: 6   NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 65

Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
            D+G Y+C  R          ++++
Sbjct: 66  TDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQEN--MWFKFIEGSSRKVAVPLNDRVKQVSGTLI 71
             F +      FK+  GE   ++C+   +      +       +       +   +  L 
Sbjct: 2   LMFKNAPTPQEFKE--GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 59

Query: 72  IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           I+  K  D G Y C       GE     + V 
Sbjct: 60  IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVR 189
            P      P       G+     C   GNPV  I W K           +EP+  I +V 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVD 63

Query: 190 KEDKGMYQCVIRNEQESAQASGEL 213
            ED+G Y+C   N +      G +
Sbjct: 64  FEDEGTYECEAENIKGRDTYQGRI 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G+   L C A  N   +      RK+      +       L I+    ED G Y C   N
Sbjct: 20  GQMVTLECFAFGNPVPQI---KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 76

Query: 90  SVGGESVETVLTVTA 104
             G ++ +  + + A
Sbjct: 77  IKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.6 bits (81), Expect = 9e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 221 PPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWY 256
            P IK  F +D     G     +C A GNP P+I W 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVR 189
            +P   T+  G  A+F+C  +G PV T++W++ G+ +             +  F I SV+
Sbjct: 4   TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 63

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
             D+G Y  V+ N +   +A   L 
Sbjct: 64  ASDEGNYSVVVENSEGKQEAEFTLT 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
           GES    C+             +G     +        +   T  I   +  D G Y  V
Sbjct: 14  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 73

Query: 87  VNNSVGGESVETVLTV 102
           V NS G +  E  LT+
Sbjct: 74  VENSEGKQEAEFTLTI 89

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------- 181
           P + A       T + G+     C  +G P  T+SW KDG+P+ +  E            
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
              I +V K D+  Y C+  N+     AS  LK
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 14  PTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSG 68
           PT  +   I+      G+S  L+C+A         W K  E    +            S 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
            L I+     D  +Y+C+  N  G +     L V A
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 221 PPVI--KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
           PP +  ++S  + T N G +    C A G P P +SW  DG
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 43

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 23/104 (22%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------------- 176
           P L AG+ P   +   G   +F CK   +    I W+K  +                   
Sbjct: 5   PILQAGL-PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 177 ------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                 D    V  I +V  ED G Y C+  N    +  S  L 
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 30  GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS-----------GTLIIK 73
           G     +C+          W K +E +  K        +K +              L I+
Sbjct: 20  GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 79

Query: 74  EAKVEDSGKYLCVVNNSVGGESVETVLTV 102
               ED+G+Y C+  NS+G       LTV
Sbjct: 80  NVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 221 PPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
            P+++    ++ +   G +  F C    +  P I W    +K 
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 46

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKG 194
             T    D G   +++C   G P   + W++DG+P+   N         R   +  ED G
Sbjct: 7   VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSG 66

Query: 195 MYQCVIRNEQESAQASGELK 214
           MYQCV  N+  +  AS EL 
Sbjct: 67  MYQCVAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G      C A        +        +   +R++   G L   +  +EDSG Y CV  N
Sbjct: 16  GSDLRWSCVASGKPRPA-VRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAEN 74

Query: 90  SVGGESVETVLTVTA 104
             G       LTV A
Sbjct: 75  KHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 256
           P   +  +D   + G +  + C+ASG P P + W 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 36

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVR 189
           V+P    +  G+ A F C+   +    ++W KD              + N+    I+ V+
Sbjct: 6   VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVK 65

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDP 221
            +DKG Y    +N   + +    L +    +P
Sbjct: 66  GDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 30  GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
           G+S    C    +   +     +    K +V    R       L I   K +D G+Y   
Sbjct: 16  GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 75

Query: 87  VNNSVGGESVETVLTVT 103
             NS G +     L VT
Sbjct: 76  AKNSYGTKEEIVFLNVT 92

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKED 192
           P L     P   T          C+  GNP+  +  +KD         P+    +V ++ 
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD----GTFPLPIGESVTVTRDL 58

Query: 193 KGMYQCVIRNEQESAQASGELK 214
           +G Y C  R+ Q        + 
Sbjct: 59  EGTYLCRARSTQGEVTREVTVN 80

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 10/89 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID----------SVR 189
               QT+  G  A F  +  G P     W K+G  +   +   +              V 
Sbjct: 10  RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 69

Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGR 218
            ED         N      +   L +  +
Sbjct: 70  GEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
            P I E    +T+  G + +F+    G P PE  WY +G K+  ++R
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR 50

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 6/97 (6%)

Query: 12  KAPTFSSVSDIIRFKKPGGESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS 67
           +AP            +  G                  +        +         +   
Sbjct: 3   EAPKIFERIQSQTVGQ--GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 68  GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
             L+I++   EDS   +    N  G  S    L V A
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVR 189
           P   T+  G+P +  C  EG     I W+KDG  V + ++               + SV 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 190 KEDKGMYQCVIRNEQESAQAS 210
           + D G Y C + +  E+  + 
Sbjct: 63  RSDAGRYWCQVEDGGETEISQ 83

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 30  GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
           G+   L C  +        W K          + +    +   G L +K  +  D+G+Y 
Sbjct: 11  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 70

Query: 85  CVVNNSVG-GESVETVLTVT 103
           C V +      S    LTV 
Sbjct: 71  CQVEDGGETEISQPVWLTVE 90

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 24/101 (23%)

Query: 139 VEPTVQTIDF------GRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR------- 184
           V P+  TI        G  A  TC  ++G+P    SW KDG  +   +    R       
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 185 ----------IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
                      D V   D G Y C  +N   +A  S    +
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 12/79 (15%)

Query: 144 QTIDFGRPAQFTC------KYEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKE 191
           Q +         C      K E N +  + W KD KP+   N           + +V ++
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 68

Query: 192 DKGMYQCVIRNEQESAQAS 210
            +G Y C         Q  
Sbjct: 69  HRGNYTCHASYTYLGKQYP 87

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
           N     V   LI+     +  G Y C  + +  G+       +        +PT
Sbjct: 50  NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEP----VFRIDS 187
           P +    E   Q++  G    F C     +P  T+ W +               +  I +
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 60

Query: 188 VRKEDKGMYQCVIRNEQESAQASGELK 214
           V+  D G Y C   N     Q +  L 
Sbjct: 61  VQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G     +C A+       +   +R     L  R    +G L I+  +  D+G Y+C  +N
Sbjct: 17  GADVTFICTAKSKSPAYTLV-WTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSN 75

Query: 90  SVGGESVETVLTV 102
               +     L V
Sbjct: 76  MFAMDQGTATLHV 88

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID----------SV 188
                  +  G  A+F CK EG P   + W KD  PV +        D           V
Sbjct: 13  KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 72

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
             +D   Y C   N    A  + EL 
Sbjct: 73  CGDDDAKYTCKAVNSLGEATCTAELL 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 13  APTFSSVSDIIRFKKPGGESFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSG 68
            P F+     +   +  G +    C+ +        +   +   ++      D  ++ + 
Sbjct: 8   KPYFTKTILDMEVVE--GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
           +L I E   +D  KY C   NS+G  +    L V
Sbjct: 66  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 141 PTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPDHNEP--------------VF 183
           PT+  ++        C     +GNP   + W  +G  + +                    
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
           ++D+    + G Y  + +NE    +             P I
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF---MGWPGI 102

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP-----------VPDHNEPVFRIDSV 188
           +    T   G   +  C+        + W K+G+              +  + +  I+  
Sbjct: 6   QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 64

Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
            K D   Y  +    Q SA+ S +LK
Sbjct: 65  TKADAAEYSVMTTGGQSSAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 30  GESFALLCEAQ----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
           GE   L CE         WFK  E            RV+     LII+ A   D+ +Y  
Sbjct: 15  GERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSV 74

Query: 86  VVNNSVGGESVETVLTV 102
           +             L+V
Sbjct: 75  MTTGGQS----SAKLSV 87

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 17/94 (18%)

Query: 139 VEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP----------------DHNEP 181
                 +   G  A  TC   +G+P    +W KDG  +P                +    
Sbjct: 7   TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG 66

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
               D +   D G Y C  RN   +   S  +++
Sbjct: 67  ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQV-----------SGTLIIKEAKVE 78
           G    L C  Q+             + +P N +  +            +G L+       
Sbjct: 17  GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 76

Query: 79  DSGKYLCVVNNSVGGESVETVLTVTA 104
           D+G+Y C   N  G       + + A
Sbjct: 77  DTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-07
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 139 VEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
           VEP    +    P Q +C+        TI W +    +         ++        M+ 
Sbjct: 6   VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFS 65

Query: 198 CVIRNE 203
           C   N 
Sbjct: 66  CEAHNL 71

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 9/112 (8%)

Query: 112 PTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD 171
           P    +  G   +        P      +  +   +           E            
Sbjct: 16  PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75

Query: 172 GKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                           +  +F ++   KED+G+Y   ++N     Q +  +K
Sbjct: 76  KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
              ++ A+ ED G Y   V N VG + V   + V
Sbjct: 95  IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 9/104 (8%), Positives = 26/104 (25%), Gaps = 8/104 (7%)

Query: 111 EPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK 170
            P    +  G    F+ +   +  L          + + +        +    + +    
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKP------PVVKWFKGKWVDLSSKVG--QHLQLHD 61

Query: 171 DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
                         I   +    G Y+C +  + +   ++  L 
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 12/80 (15%), Positives = 25/80 (31%)

Query: 27  KPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
               +   +     + +      G   ++    +   K     L I +A+   +G Y C 
Sbjct: 31  ASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCE 90

Query: 87  VNNSVGGESVETVLTVTAPL 106
           V+     +     LTV   +
Sbjct: 91  VSTKDKFDCSNFNLTVHEAM 110

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 22/105 (20%)

Query: 141 PTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPDHN----------------EP 181
           P    +         C     +G P  ++ W+ +G  + + +                  
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
             R++     + G Y  +  N    A AS         D P    
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFEFN 105

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
            G L + +    ++G Y  +  N  G  S   +      
Sbjct: 62  HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 7/72 (9%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPV------FRIDSVRKE 191
           V   V T   G     TC         T+ W+        H            + SV+  
Sbjct: 11  VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLH 70

Query: 192 DKGMYQCVIRNE 203
           D G Y C     
Sbjct: 71  DSGNYSCYRAGR 82

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 6   LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQ 65
           L P     P       ++      G+S  L C   E      +    RK A   +     
Sbjct: 1   LAPRR--CPAQEVARGVLTSLP--GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA 56

Query: 66  VSGT-LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
             G  L+++  ++ DSG Y C       G +V  ++ V
Sbjct: 57  GMGRRLLLRSVQLHDSGNYSCYRAGRPAG-TVHLLVDV 93

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 1   MVGSDLK-PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPL 59
           +VG + + P        ++  ++  ++ P      L    ++    +  E   R     L
Sbjct: 15  LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGR--TELL 72

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
            + + +    L I+  +  D G Y C   +    E     L V  P
Sbjct: 73  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 12/128 (9%)

Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
             V  P      P    +  G  A+  C+               ++        +    +
Sbjct: 3   FRVIGP----GHPIRALV--GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKD 56

Query: 160 GNPVKTISWMKDGKPV---PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216
            +  +   +    + +       +   RI +VR  D+G Y C  R+     +A+ ELK+ 
Sbjct: 57  QDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV- 115

Query: 217 GRFDPPVI 224
              DP   
Sbjct: 116 --EDPFYW 121

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 14/81 (17%), Positives = 19/81 (23%), Gaps = 9/81 (11%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVR 189
            +P         P    C  EGN        K                 +E        +
Sbjct: 7   DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQ 66

Query: 190 KEDKGMYQCVIRNEQESAQAS 210
             D+G YQC        A + 
Sbjct: 67  ASDEGHYQCFAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 12  KAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPL---NDRVKQVSG 68
           K P        + F++       L C  + N             +      N  +++  G
Sbjct: 1   KYPVLKDQPAEVLFRE--NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 58

Query: 69  TLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVT 103
           +L+    +  D G Y C      G  S   +    T
Sbjct: 59  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 15/86 (17%)

Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVP--------------DHNEPVFR 184
             +  +I  G P +  C  +    +  ++W K                    + +  +  
Sbjct: 9   RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILH 68

Query: 185 IDSVRKEDKGMYQCVIRNEQESAQAS 210
            + V   D G Y+C    +    ++ 
Sbjct: 69  FEPVLPNDNGSYRCSANFQSNLIESH 94

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 111 EPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK 170
           +P   T+  G    F  K +    L     PT++                   K +   +
Sbjct: 6   KPQGGTVKVGEDITFIAKVKAEDLLRK---PTIKWFKG-----KWMDLASKAGKHLQLKE 57

Query: 171 DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
             +          +I   +    G Y+C +  + +    S +L+
Sbjct: 58  TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 62  RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
             +  +  + I +AK   +G Y C V      +S    L V   
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 105

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 8e-06
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------------DHNEPVFRID 186
           +      ++ G+ A F C   G  V        G  V                   F + 
Sbjct: 6   LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 65

Query: 187 SVRKEDKGMYQCVIRNEQESAQAS 210
           +  K D G Y+C+IR E     ++
Sbjct: 66  NTTKRDAGKYRCMIRTEGGVGISN 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 12  KAPTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQ 65
           + P F  + ++       G+     C A         +W + I+     +        ++
Sbjct: 1   RTPHFLRIQNVEVNA---GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 57

Query: 66  VSGTLIIKEAKVEDSGKYLCVVNNSVG-GESVETVLTV 102
              +  +      D+GKY C++    G G S    L V
Sbjct: 58  FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 139 VEPTVQTIDFG---RPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDS 187
            +P       G        TC+   NP  T  W  +G  +    +  +R         + 
Sbjct: 9   EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNP 68

Query: 188 VRKEDKGMYQCVIRNEQESA 207
           V+ +D G YQCV  N + + 
Sbjct: 69  VKAKDAGSYQCVATNARGTV 88

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 22/68 (32%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           +EP   ++         C+   +P    +     + +       + ID+    D G Y+C
Sbjct: 10  LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRC 69

Query: 199 VIRNEQES 206
                  S
Sbjct: 70  QTNLSTLS 77

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 140 EPTVQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDHNEPVFRID---------SVR 189
           E  +            C         TI+W KD    P   E   RI            +
Sbjct: 8   EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 67

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
            ED G Y CV+RN     +     K
Sbjct: 68  VEDSGHYYCVVRNSSYCLRIKISAK 92

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 28  PGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
              E     C    N       W+K    +          R+ Q    L    AKVEDSG
Sbjct: 15  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ--ASRIHQHKEKLWFVPAKVEDSG 72

Query: 82  KYLCVVNNSVGGESVETVLTV 102
            Y CVV NS     ++     
Sbjct: 73  HYYCVVRNSSYCLRIKISAKF 93

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 15/94 (15%)

Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP------ 181
           K E  P               G      C Y  NP+   ++ K+GK V  + E       
Sbjct: 1   KGEPVPQYV----SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN 56

Query: 182 -----VFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
                     +   ED+G+Y C + N     Q  
Sbjct: 57  RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 8e-05
 Identities = 13/71 (18%), Positives = 22/71 (30%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           + P    I  G     TC        + +       + +       I + + ED G Y+C
Sbjct: 6   LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKC 65

Query: 199 VIRNEQESAQA 209
             +   ES   
Sbjct: 66  QHQQVNESEPV 76

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 8e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 11/78 (14%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK 190
                +  G   + T +   +    + W+K+G+ +              +    I     
Sbjct: 13  EPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL 71

Query: 191 EDKGMYQCVIRNEQESAQ 208
            D   YQCV+  E+ S +
Sbjct: 72  ADDAAYQCVVGGEKCSTE 89

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           +G L IK    +DSG Y   V ++ G   +   L + 
Sbjct: 59  NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 95

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 23/105 (21%), Gaps = 28/105 (26%)

Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------------------HN 179
                +D G   Q  C   G       W  +G  + +                       
Sbjct: 9   NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 68

Query: 180 EPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGELKLGGRFDPPV 223
             V  I  +        + C  +N      A  +L        PV
Sbjct: 69  ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI------YPV 107

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 1   MVGSDLK-PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSR-KVAVP 58
            VGS +     F +  + S      ++         +          +I+     K  + 
Sbjct: 12  AVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQ 71

Query: 59  LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS--VGGESVETVLTVT 103
                    G+++I      D+G + C V N   + G++ +  L V 
Sbjct: 72  WVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
            DRV   S  +       +D+G+Y C+V+   G    E  + +T
Sbjct: 57  ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP----------------VPDHNEPV 182
              + + I+ G  A   CK E  P  T                                 
Sbjct: 7   AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSE 66

Query: 183 FRIDSVRKEDK-GMYQCVIRNEQESAQASGELK 214
             I+++  E   G Y+C   + + S QA   L+
Sbjct: 67  LHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW---------MKDGKPVPDHNEPVFRIDSVR 189
                  I  G        + G P  T +W           +       +       S +
Sbjct: 7   TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAK 66

Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
           + D G Y+  ++NE    +A  E+ 
Sbjct: 67  RADSGNYKLKVKNELGEDEAIFEVI 91

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 14/92 (15%)

Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVPDHNE--------- 180
           PP    +      +  G+     C+          T+   +  + +              
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 181 --PVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
               F   + R++    + C+   +  S   +
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLMSRGGN 92

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 9/88 (10%)

Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVPDHN------EPV 182
             P    + P       G+     C+ EG       T+  ++  K +          E  
Sbjct: 2   WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQAS 210
             +   R      + C    +       
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGLE 89

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 5/42 (11%), Positives = 13/42 (30%)

Query: 65  QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
               T  +   +     ++ C     +  + +E     +AP 
Sbjct: 57  PAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY 98

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN 179
           G   + TC       +    + + Q    G    F  K            +      D  
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW---DQG 65

Query: 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
                I +++ ED   Y C + +++E  Q
Sbjct: 66  NFPLIIKNLKIEDSDTYICEVEDQKEEVQ 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 141 PTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVP-------------DHNEPVFR 184
           P V +++        C      GNP  T+ W+ +G+P+              + +E    
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65

Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
            +     + G Y  + +N   +A  +          P 
Sbjct: 66  FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 103

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 6e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%)

Query: 30  GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
           G +  L C  + N+   F +  +  +              L+I      DSG Y C+   
Sbjct: 12  GGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 71

Query: 90  SVGGESVETVLTV 102
            V  ++V  V+  
Sbjct: 72  RVKNKTVFQVVAK 84

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 7e-04
 Identities = 10/68 (14%), Positives = 16/68 (23%)

Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
           +EP    +        TC+   +P            +   +            D G Y C
Sbjct: 9   LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTC 68

Query: 199 VIRNEQES 206
                  S
Sbjct: 69  QTGQTSLS 76

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 42  NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101
           +  +       +      ++ +K    ++ +   ++ D G Y C V  + G  + +  L 
Sbjct: 62  DKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121

Query: 102 V 102
           V
Sbjct: 122 V 122

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-DSVRKEDKGMYQCVIRNEQESA 207
           G   + TC  + +  + + W K+G+ +P  ++    + D    ED G Y C      ++ 
Sbjct: 14  GTSVELTCPLDSD--ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 60  NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
              +  VSG+L I      D  +Y     N     +++  L V
Sbjct: 52  RVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 67  SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
           + +++I   +  D G Y CVV            L   
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 10/74 (13%)

Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKG 194
             +  G  A F  +    P     W   G+P+             + +  + + +    G
Sbjct: 11  VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTG 69

Query: 195 MYQCVIRNEQESAQ 208
                  N + +A 
Sbjct: 70  EVSFQAANAKSAAN 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.61
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.61
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.59
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.56
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.55
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.54
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.54
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.53
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.51
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.51
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.51
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.51
d2avga1	110	Cardiac myosin binding protein C, different domain	99.51
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.49
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.49
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.49
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.47
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.46
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.46
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.46
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.46
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.44
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.44
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.44
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.44
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.43
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.43
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.43
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.43
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.43
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.43
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.42
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.42
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.41
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.41
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.41
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.41
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.4
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.4
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.4
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.39
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.39
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.39
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.37
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.36
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.35
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.35
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.34
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.34
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.33
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.33
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.33
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.32
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.31
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.3
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.28
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.27
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.26
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.24
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.24
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.22
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.21
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.2
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.18
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.17
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.17
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.12
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.12
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.06
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.06
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.05
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.05
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.04
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.03
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.02
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.02
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.01
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.97
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.89
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.89
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.87
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.86
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.85
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.85
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.82
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.77
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.75
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.75
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.74
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.73
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.72
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.71
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.7
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.69
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.68
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.68
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.68
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.67
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.66
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.66
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.66
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.66
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.65
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.65
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.65
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.64
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.63
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.63
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.63
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.63
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.62
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.61
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.6
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.6
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.6
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.6
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.59
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.59
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.58
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.58
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.58
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.57
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.57
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.57
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.57
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.56
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.56
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.56
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.56
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.56
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.55
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.55
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.55
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.55
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.55
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.55
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.55
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.53
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.52
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.52
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.51
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.51
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.51
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.5
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.5
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.5
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.5
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.49
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.48
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.47
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.47
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.47
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.45
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.44
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.44
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.44
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.43
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.43
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.42
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.42
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.42
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.41
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.41
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.39
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.39
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.37
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.35
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.35
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.34
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.34
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.32
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.3
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.26
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.25
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.24
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.23
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.23
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.22
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.22
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.21
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.21
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.21
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.21
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.21
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.2
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.2
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.18
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.17
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.17
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.17
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.16
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.16
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.16
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.15
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.15
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.15
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.14
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.13
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.12
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.12
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.11
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.11
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.11
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.11
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.11
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.1
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.1
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.09
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.09
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.09
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.09
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.08
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.08
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.08
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.08
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.07
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.06
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.06
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.06
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.05
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.05
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.05
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.05
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.04
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.03
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.02
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.02
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.02
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.02
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.02
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.02
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.02
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.01
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.01
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.0
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.0
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.99
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.99
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.99
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.99
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.99
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.98
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.98
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.98
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.97
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.97
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.97
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.96
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.95
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.95
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.95
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.95
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.94
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.93
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.93
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.92
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.92
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.91
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.91
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.91
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.9
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.9
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.89
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.87
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.87
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.87
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.87
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.86
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.86
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.85
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.84
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.84
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.84
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.84
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.83
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.83
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.82
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.82
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.82
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.81
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.81
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.81
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.8
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.79
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.79
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.78
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.77
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.77
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.76
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.75
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.74
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.73
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.73
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.72
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.71
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.7
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.69
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.68
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.67
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.66
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.66
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.66
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.65
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.64
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.64
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.64
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.64
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.63
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.62
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.62
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.61
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.6
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.6
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.57
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.54
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.54
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.53
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.53
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.52
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.52
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.5
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.49
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.48
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.47
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.46
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.46
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.46
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.45
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.44
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.44
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.44
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.39
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.39
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.37
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.37
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.37
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.36
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.36
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.35
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.33
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.32
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.31
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.29
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.28
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.28
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.28
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.28
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.28
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	97.26
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.23
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.21
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.21
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.2
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.18
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.17

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.3e-16  Score=97.79  Aligned_cols=83  Identities=28%  Similarity=0.413  Sum_probs=71.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.|.|..|....++
T Consensus         7 p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   86 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV   86 (101)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCE
T ss_pred             CCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEE
Confidence            455688999999999999999999999999999886532         35799999999999999999999999988888


Q ss_pred             EEEEecccCCCe
Q psy3045         212 ELKLGGRFDPPV  223 (267)
Q Consensus       212 ~l~v~~~~~~p~  223 (267)
                      .|.|.....+|.
T Consensus        87 ~l~V~~~P~pP~   98 (101)
T d2cqva1          87 NLTVVDKPDPPA   98 (101)
T ss_dssp             EEEEECSCSCCC
T ss_pred             EEEEEecCCCcC
Confidence            898876544443

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=4.3e-16  Score=96.55  Aligned_cols=77  Identities=32%  Similarity=0.638  Sum_probs=67.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      .+.+..+..|+++.|.|.+.|.|.|.+.|++||.++..+.     ...|.|.++..+|+|.|+|.|.|..|....+..|.
T Consensus         7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (89)
T d1cs6a4           7 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT   86 (89)
T ss_dssp             CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEE
Confidence            3455688999999999999999999999999999887543     46899999999999999999999999888888877


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      |+
T Consensus        87 V~   88 (89)
T d1cs6a4          87 VQ   88 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=9.5e-16  Score=95.50  Aligned_cols=76  Identities=28%  Similarity=0.465  Sum_probs=64.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++.....   .....|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            4556888999999999999999999999997765432   246789999999999999999999999988877777764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.61  E-value=7.3e-16  Score=96.08  Aligned_cols=78  Identities=29%  Similarity=0.622  Sum_probs=67.5

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      ..|....+.+|+++.|.|.+.|.|.|.+.|++++..+...         ....|.|.++..+|+|.|+|.|.|..|....
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   83 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE
Confidence            3456668999999999999999999999999999988643         3467999999999999999999999999888


Q ss_pred             EEEEEEe
Q psy3045         210 SGELKLG  216 (267)
Q Consensus       210 ~~~l~v~  216 (267)
                      ++.|.|+
T Consensus        84 ~~~l~V~   90 (91)
T d1tnna_          84 EFTLTIQ   90 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            8777664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=93.20  Aligned_cols=77  Identities=21%  Similarity=0.370  Sum_probs=63.8

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKL  215 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v  215 (267)
                      ..+....+.+|+.+.|.|.+.|.|.| ++.|+|||..+.......+.|.....+|+|.|+|.|.|..|...+ ...+.|
T Consensus         6 ~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2           6 VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             ECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            34556688999999999999999977 999999999998777777888888889999999999999985432 455544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.5e-15  Score=95.11  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=66.7

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------CCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      ..+....+..|+++.|.|.+.|.|.|.+.|++++..+..+.         ...|.|.++..+|+|.|+|.|.|..|....
T Consensus         7 ~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~   86 (93)
T d1wiua_           7 TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA   86 (93)
T ss_dssp             CCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEE
T ss_pred             eCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEE
Confidence            34456689999999999999999999999999998876532         357999999999999999999999998888


Q ss_pred             EEEEEE
Q psy3045         210 SGELKL  215 (267)
Q Consensus       210 ~~~l~v  215 (267)
                      ++.|.|
T Consensus        87 ~~~l~V   92 (93)
T d1wiua_          87 IFEVIV   92 (93)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877766

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=1.1e-15  Score=94.76  Aligned_cols=73  Identities=25%  Similarity=0.512  Sum_probs=63.5

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++.++..+    ....|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            347788999999999999999999999999998654    2467999999999999999999999988777776665

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.1e-15  Score=96.42  Aligned_cols=78  Identities=22%  Similarity=0.405  Sum_probs=66.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..+         ....|.|.++..+|+|.|+|.|.|..|....+
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   86 (97)
T d1koaa1           7 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI   86 (97)
T ss_dssp             CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred             eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence            345558899999999999999999999999999887543         23469999999999999999999999988888


Q ss_pred             EEEEEec
Q psy3045         211 GELKLGG  217 (267)
Q Consensus       211 ~~l~v~~  217 (267)
                      +.|.|..
T Consensus        87 ~~l~V~~   93 (97)
T d1koaa1          87 VFLNVTR   93 (97)
T ss_dssp             ECCEEEC
T ss_pred             EEEEEee
Confidence            8887764

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=2.1e-15  Score=93.41  Aligned_cols=82  Identities=26%  Similarity=0.401  Sum_probs=69.3

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      |.|...+  .+..+.+|+++.|.|.+.+     +.|++++.      .+....++...++.|.|.++..+|+|.|+|.+.
T Consensus         2 P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~------~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           2 PDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ------PLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEECC--CCEEEETTCCEEEECEEEEESCCEEEEEETTE------ECCCCSSEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEEC--CCEEECCCCcEEEEEEEEEEcCCEEEEEEeec------cccccceeeeeeeeEEEEeecccCCEEEEEEEE
Confidence            6788777  7899999999999999998     99999632      233345666677899999999999999999999


Q ss_pred             cCCCccEEEEEEEEE
Q psy3045          89 NSVGGESVETVLTVT  103 (267)
Q Consensus        89 ~~~~~~~~~~~l~V~  103 (267)
                      |..|.......|.|.
T Consensus        74 N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          74 NKHGTVYASAELTVQ   88 (89)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999988888888875

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1e-15  Score=97.27  Aligned_cols=93  Identities=24%  Similarity=0.352  Sum_probs=68.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .||.|...+.....++..|+++.|.|.+.+     +.|++++...................++|.|.+++.+|+|.|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            368887766545678899999999999998     999996432211111111111122346899999999999999999


Q ss_pred             EEcCCCccEEEEEEEEEe
Q psy3045          87 VNNSVGGESVETVLTVTA  104 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~~  104 (267)
                      |.|..|..+..+.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999988888888864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.59  E-value=2.1e-15  Score=96.14  Aligned_cols=77  Identities=29%  Similarity=0.478  Sum_probs=66.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++|+..+..+.          ...|.|.++..+|.|.|+|.|.|..|....
T Consensus        14 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   93 (102)
T d1fhga_          14 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC   93 (102)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE
Confidence            3455688899999999999999999999999998886432          357999999999999999999999998888


Q ss_pred             EEEEEEe
Q psy3045         210 SGELKLG  216 (267)
Q Consensus       210 ~~~l~v~  216 (267)
                      ++.|.|.
T Consensus        94 ~~~L~V~  100 (102)
T d1fhga_          94 TAELLVE  100 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888775

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=95.40  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++|+..+..+.          ...|.|.++..+|+|.|+|.|.|..|....+
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            445588899999999999999999999999999886542          2479999999999999999999999998888


Q ss_pred             EEEEEe
Q psy3045         211 GELKLG  216 (267)
Q Consensus       211 ~~l~v~  216 (267)
                      ..|.|.
T Consensus        91 ~~L~V~   96 (98)
T d1g1ca_          91 AFLLVQ   96 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=5.4e-15  Score=91.74  Aligned_cols=75  Identities=21%  Similarity=0.364  Sum_probs=64.2

Q ss_pred             CceEEEecCCCEEEEeEeC-CCCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +....+.+|+++.|.|.+. +.|.+.+.|++++..+...    ....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            4556889999999999987 5678899999998877543    3578999999999999999999999998877777766

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=3.2e-15  Score=92.56  Aligned_cols=82  Identities=23%  Similarity=0.389  Sum_probs=66.7

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +|.|...+. ..+.+.+|+++.|.|.+.+     +.|++++...       ...+....+..|.|.++...|+|.|+|.|
T Consensus         2 aP~f~~~p~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   73 (89)
T d1biha4           2 APKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-------SGGRATVTDSGLVIKGVKNGDKGYYGCRA   73 (89)
T ss_dssp             EEEEEECCC-SEEEECTTSCEEEECEEEEESCCCCEEEETTEEC-------CSSSEEEETTEEEESSCCSTTCEEEEEEE
T ss_pred             CCeEEECCC-CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccC-------ccccEEEeeeeEEECCCChhhCEEEEEEE
Confidence            578887763 5678999999999999998     9999963321       13345556678999999999999999999


Q ss_pred             EcCCCccEEEEEEEE
Q psy3045          88 NNSVGGESVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V  102 (267)
                      .|..|.....+.|.|
T Consensus        74 ~N~~G~~~~~~~l~V   88 (89)
T d1biha4          74 TNEHGDKYFETLVQV   88 (89)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999998888887776

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.3e-15  Score=94.41  Aligned_cols=86  Identities=26%  Similarity=0.363  Sum_probs=69.0

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      |.|...+  .+..+.+|+++.|.|.+.+     +.|++++...      ....++.    ....+|.|.++..+|+|.|+
T Consensus         1 P~~~~~p--~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   72 (101)
T d2cqva1           1 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI------QESEHMKVENSENGSKLTILAARQEHCGCYT   72 (101)
T ss_dssp             CEESCCC--CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBC------CCSSSEEEEECSSEEEEEETTCCTTTCEEEE
T ss_pred             CeEEeeC--CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceee------ccCCcEEEEEecceeEEEEeeCCcccCEEEE
Confidence            6777776  7899999999999999998     9999964322      1222222    13357999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccc
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.+.|..|..+..+.|.|.+.|.
T Consensus        73 C~a~N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          73 LLVENKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEECCCEEEEEEEEEEEecCC
Confidence            99999999999899999987654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=2e-15  Score=95.25  Aligned_cols=89  Identities=24%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .|.|...+  .+..+.+|+++.|.|.+.+     +.|++++....  ....+..+.......|.|.++...|+|.|+|.|
T Consensus         1 ~P~f~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   76 (97)
T d1koaa1           1 QPRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRA   76 (97)
T ss_dssp             SCEEEECC--CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECC--SBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEE
T ss_pred             CCEEEEeC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccc--eeeEEEEEecCCeeEEEeCCCceecCEEEEEEE
Confidence            37888887  7889999999999999998     99999643221  111111112223457999999999999999999


Q ss_pred             EcCCCccEEEEEEEEEec
Q psy3045          88 NNSVGGESVETVLTVTAP  105 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~~~  105 (267)
                      .|..|..+..+.|.|...
T Consensus        77 ~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          77 KNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             EETTEEEEEEECCEEECS
T ss_pred             EECCCEEEEEEEEEEeec
Confidence            999999888888888754

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-14  Score=91.33  Aligned_cols=88  Identities=22%  Similarity=0.372  Sum_probs=67.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE----EeeEEEEeecc-cCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAK-VEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~-~~d~G   81 (267)
                      ||.|...+  .+..+.+|+++.|.|.+.+      +.|++++.+...........++..    ....|.|.++. ..|+|
T Consensus         2 PP~i~~~~--~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEEcC--CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            78898877  7888999999999999998      889996544433333223333332    23589999998 47999


Q ss_pred             eEEEEEEcCCCccEEEEEEEE
Q psy3045          82 KYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      .|+|.|.|..|..+..+.|.|
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999999999888888876

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.57  E-value=3.9e-15  Score=93.85  Aligned_cols=72  Identities=31%  Similarity=0.590  Sum_probs=63.1

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ..+..|+.+.|.|.+.|.|.|.+.|++||.++...          ....|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46788999999999999999999999999887532          23689999999999999999999999988777777


Q ss_pred             EE
Q psy3045         214 KL  215 (267)
Q Consensus       214 ~v  215 (267)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=6.3e-15  Score=92.17  Aligned_cols=86  Identities=23%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +|.|...+  .++.+.+|+++.|.|.+.+     +.|++++....  ...............|.|.++..+|+|.|+|.|
T Consensus         2 ~P~i~~~~--~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA--LAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCC--CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCB--CSTTSEEEEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCC--CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeece--eeeeeeecccccceeeccccccccccEEEEEEE
Confidence            68888776  7899999999999999998     99999643221  111111122223458999999999999999999


Q ss_pred             EcCCCccEEEEEEEE
Q psy3045          88 NNSVGGESVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V  102 (267)
                      .|..|..+..+.|.|
T Consensus        78 ~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          78 KNELGEDEAIFEVIV   92 (93)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999888888776

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=89.69  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             CceEEEecCCCEEEEeEeC-CCCCceEEEEECCccCCC----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      .....+..|+++.|.|.+. +.|.+.+.|++.+.++..    ...+.|.|.+++.+|+|.|+|.|.|..+..+.+..|.|
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence            3445788999999999875 778899999998877643    24578999999999999999999999988777777765

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.9e-15  Score=94.02  Aligned_cols=72  Identities=32%  Similarity=0.628  Sum_probs=62.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      .+..|+++.|.|.+.|.|.|.+.|+++|..+...           ..+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   95 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL   95 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            5667999999999999999999999999887532           34689999999999999999999999988888777


Q ss_pred             EEe
Q psy3045         214 KLG  216 (267)
Q Consensus       214 ~v~  216 (267)
                      .|.
T Consensus        96 ~V~   98 (100)
T d1qz1a3          96 KVF   98 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.9e-15  Score=90.28  Aligned_cols=71  Identities=8%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+.+|++++|.|.+.|.|.|.+.|++++..+. .....|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~-~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEE-EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeecccce-eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            68889999999999999999999999876653 345789999999999999999999999888777777765

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=5.6e-15  Score=93.35  Aligned_cols=86  Identities=21%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE---E--EeeEEEEeecccCCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK---Q--VSGTLIIKEAKVEDS   80 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~---~--~~~~l~i~~~~~~d~   80 (267)
                      .++|.|...+  .+..+.+|+.+.|.|.+.+     +.|++++...      ....+..   .  ...+|.|.++...|+
T Consensus         2 ~eaP~f~~~~--~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i------~~~~~~~~~~~~~~~~~L~I~~~~~~D~   73 (98)
T d1g1ca_           2 MEAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI------ERSDRIYWYWPEDNVCELVIRDVTGEDS   73 (98)
T ss_dssp             CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC------CCCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CcCCeEecCC--CcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEE------eeeeeeEEEeccceEEEEEeccCccccC
Confidence            3578998887  7899999999999999988     9999963321      1122211   1  234899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      |.|+|.+.|..|..+....|.|..
T Consensus        74 G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          74 ASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCcEEEEEEEEEEEE
Confidence            999999999999988888888864

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=88.81  Aligned_cols=72  Identities=14%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+...      ....|.|.++..+|+|.|+|.|.|..|..+.+..|.|.
T Consensus        12 ~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            5678999999999999999999999987765432      34679999999999999999999999988888777763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.54  E-value=7.2e-15  Score=91.42  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .||.|.... +.+..+.+|+++.|.|.+.+     +.|++++...        ..+....++.|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~i~~~~-p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~--------~~~~~~~~~~L~I~~v~~~D~G~Y~C~   73 (91)
T d1cs6a3           3 YAPSIKAKF-PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSSEPLLHIQNVDFEDEGTYECE   73 (91)
T ss_dssp             EEEEEEECC-CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCC--------SCCCSBSSSEEEECSCCGGGCEEEEEE
T ss_pred             cCCeEEeeC-CCcEEEecCCcEEEEEEEEEccCCEEEEEeccccc--------ceEeeeeeeEEEeCCCCccCCEEEEEE
Confidence            357776542 17899999999999999998     9999963321        111222345899999999999999999


Q ss_pred             EEcCCCccEEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTVT  103 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~  103 (267)
                      |.|..|.....+.|.|.
T Consensus        74 a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          74 AENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999988888888775

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.2e-14  Score=90.57  Aligned_cols=76  Identities=24%  Similarity=0.404  Sum_probs=62.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      .|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        .++.|.|.++..+|+|.|+|.|.|..+......
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~   86 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK   86 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEE
Confidence            345568999999999999999999999999999876432        346799999999999999999999876665555


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .+.|
T Consensus        87 ~i~V   90 (92)
T d1epfa2          87 DIQV   90 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.8e-14  Score=87.80  Aligned_cols=73  Identities=23%  Similarity=0.473  Sum_probs=60.0

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ....+.+|+++.|.|.+.+      +.|++++...       ...+....++.|.|.+++..|+|.|+|.|.|..|..+.
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBC-------CCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCcee-------eccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            6889999999999999974      9999964322       12234445678999999999999999999999998888


Q ss_pred             EEEEEE
Q psy3045          97 ETVLTV  102 (267)
Q Consensus        97 ~~~l~V  102 (267)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887776

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=4.6e-14  Score=88.80  Aligned_cols=74  Identities=24%  Similarity=0.405  Sum_probs=61.9

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-  209 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-  209 (267)
                      .+..+..|+++.|.|.+.|.|.+.+.|++++..+...           ....|.|.+++.+|+|.|+|.|.|..|.... 
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            3457889999999999999999999999999887532           2367999999999999999999999987653 


Q ss_pred             EEEEEE
Q psy3045         210 SGELKL  215 (267)
Q Consensus       210 ~~~l~v  215 (267)
                      +..|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6e-14  Score=86.68  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             eeEEecCCCeEEEEEEec-c-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ....+.+|+++.|.|.+. +     +.|++.+...       ...+.....+.|.|.+++.+|+|.|+|.|.|..+..+.
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~   83 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   83 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT-------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee-------eeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence            578899999999999875 3     9999853211       11222234568999999999999999999999988888


Q ss_pred             EEEEEEE
Q psy3045          97 ETVLTVT  103 (267)
Q Consensus        97 ~~~l~V~  103 (267)
                      .+.|.|+
T Consensus        84 s~~l~Vy   90 (90)
T d1gsma1          84 TVQLLVY   90 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            8888774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=89.01  Aligned_cols=76  Identities=28%  Similarity=0.527  Sum_probs=62.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCce-
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ-  208 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-  208 (267)
                      |.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            345588999999999999999999999999999886431           24689999999999999999999988653 


Q ss_pred             EEEEEEEe
Q psy3045         209 ASGELKLG  216 (267)
Q Consensus       209 ~~~~l~v~  216 (267)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            35666553

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.51  E-value=4.5e-14  Score=91.08  Aligned_cols=76  Identities=25%  Similarity=0.371  Sum_probs=62.1

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC----------------------CCCCeEEeccCCCCCCeEEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~----------------------~~~~~l~i~~~~~~d~g~y~  197 (267)
                      .|.+..+..|+++.|.|.+.|.|.|.+.|++++.....                      .....|.|.++..+|+|.|+
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   90 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT   90 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence            45677999999999999999999999999997644211                      01256999999999999999


Q ss_pred             EEEEcCCCCceEEEEEEE
Q psy3045         198 CVIRNEQESAQASGELKL  215 (267)
Q Consensus       198 C~~~~~~~~~~~~~~l~v  215 (267)
                      |.|.|..|....++.|.|
T Consensus        91 C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          91 CLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999888887765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.51  E-value=2e-14  Score=91.47  Aligned_cols=85  Identities=24%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~   80 (267)
                      ..+|.|...+  .+..+.+|+++.|.|.+.+     +.|++++...      ....+...     ...+|.|.+++..|+
T Consensus         6 ~~~P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i------~~~~~~~~~~~~~~~~~L~I~~~~~~D~   77 (102)
T d1fhga_           6 HVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV------KESRHFQIDYDEEGNCSLTISEVCGDDD   77 (102)
T ss_dssp             CEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC------CCSSSEEEEECTTCEEEEEESSCCGGGC
T ss_pred             CCCCeEEcCC--CcEEEecCCcEEEEEEEEeccCCeEEEEeeeccc------cceeeEeEEEecCceeeeEecCCCHHhC
Confidence            3578898877  7899999999999999998     9999964322      11222211     245799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEE
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      |.|+|.|.|..|.....+.|.|.
T Consensus        78 G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          78 AKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCcEEEEEEEEEEE
Confidence            99999999999998888888775

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-14  Score=89.51  Aligned_cols=82  Identities=13%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             ccccCCceEEEecCCCEEEEeEeCCCC---CceEEEEECCccCCCC------------------CCCeEEeccCCCCCCe
Q psy3045         136 AAGVEPTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDGKPVPDH------------------NEPVFRIDSVRKEDKG  194 (267)
Q Consensus       136 ~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~~~~~~~------------------~~~~l~i~~~~~~d~g  194 (267)
                      .+...+....+..|++++|.|.+.|.|   .|.+.|++++......                  ....|.|.+++.+|+|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            344456667899999999999999988   5789999987543211                  1246999999999999


Q ss_pred             EEEEEEEcCCCCceEEEEEEEec
Q psy3045         195 MYQCVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       195 ~y~C~~~~~~~~~~~~~~l~v~~  217 (267)
                      .|+|.|.|..|....++.|.|..
T Consensus        86 ~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          86 GYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEEEEECCCeEEEEEEEEEEe
Confidence            99999999999999999888863

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.3e-15  Score=88.92  Aligned_cols=72  Identities=21%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...    +.+..++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~----~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT----TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee----eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            45568889999999999999999999999999876432    2345678899999999999999988777777764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.49  E-value=1.6e-13  Score=88.43  Aligned_cols=90  Identities=22%  Similarity=0.333  Sum_probs=63.6

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCc-------e----EEEEeeEEEEeec
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLND-------R----VKQVSGTLIIKEA   75 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~-------~----~~~~~~~l~i~~~   75 (267)
                      .+|.|.... +.+.++.+|+++.|.|.+.+     +.|++++.............       .    .......|.|.++
T Consensus         3 ~~P~i~~~~-P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           3 HRPILQAGL-PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             SCCEECTTC-SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCCEEcCCC-CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            468887653 17899999999999999999     99998633211111100000       0    0123467999999


Q ss_pred             ccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045          76 KVEDSGKYLCVVNNSVGGESVETVLTV  102 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~~~~~~~~l~V  102 (267)
                      +.+|+|.|+|.|.|..|.....+.|.|
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999888888876

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.49  E-value=1.7e-14  Score=89.68  Aligned_cols=84  Identities=23%  Similarity=0.307  Sum_probs=63.1

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      |...|  .++.+.+|+++.|.|.+.+     +.|++++....  .............++|.|.++...|+|.|+|.+.|.
T Consensus         2 ii~~P--~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   77 (91)
T d1tnna_           2 ILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS--TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   77 (91)
T ss_dssp             CSBCC--CCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTC--SSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCS
T ss_pred             EEeCC--cCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccc--cccceeeeeecceeEEeecCCCHHHCEEEEEEEEEC
Confidence            44455  7899999999999999998     99999643221  111111112224568999999999999999999999


Q ss_pred             CCccEEEEEEEEE
Q psy3045          91 VGGESVETVLTVT  103 (267)
Q Consensus        91 ~~~~~~~~~l~V~  103 (267)
                      .|..+..+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1tnna_          78 EGKQEAEFTLTIQ   90 (91)
T ss_dssp             SCBCCEEEEEECC
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888777764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.1e-14  Score=89.90  Aligned_cols=86  Identities=19%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEE----------EEeeEEEEeec
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVK----------QVSGTLIIKEA   75 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~   75 (267)
                      |.|...|  .+..+.+|++++|.|.+.+        +.|++++.....   .....++.          ...+.|.|.++
T Consensus         5 ~~Fv~~P--~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   79 (110)
T d2avga1           5 GLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS---SKVGQHLQLHDSYDRASKVYLFELHITDA   79 (110)
T ss_dssp             CSEEECC--CCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCST---TTCSSSEEEEEEEETTTTEEEEEEEEESC
T ss_pred             CEeEECC--CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeec---ccCCceeEeeeeeEEecccCEEEEEEecc
Confidence            5787777  7899999999999999976        889986321111   01111111          12357999999


Q ss_pred             ccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          76 KVEDSGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +..|+|.|+|.+.|..|..+..+.|.|..
T Consensus        80 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          80 QPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            99999999999999999999999999875

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-13  Score=86.71  Aligned_cols=77  Identities=23%  Similarity=0.390  Sum_probs=61.3

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCC---------------CCCCeEEeccCC-CCCCeEEEEEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPD---------------HNEPVFRIDSVR-KEDKGMYQCVIR  201 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~---------------~~~~~l~i~~~~-~~d~g~y~C~~~  201 (267)
                      ..+....+.+|+.+.|.|.+.+.|.+ .+.|++++.....               .....|.|.++. .+|+|.|+|.|.
T Consensus         7 ~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~   86 (101)
T d3b5ha1           7 AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT   86 (101)
T ss_dssp             ESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEE
T ss_pred             EcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEE
Confidence            34556688999999999999999866 8999997644321               123578999998 579999999999


Q ss_pred             cCCCCceEEEEEEE
Q psy3045         202 NEQESAQASGELKL  215 (267)
Q Consensus       202 ~~~~~~~~~~~l~v  215 (267)
                      |..|.......|.|
T Consensus        87 N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          87 SSKGSDQAIITLRV  100 (101)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998877777765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=8.7e-14  Score=87.07  Aligned_cols=71  Identities=27%  Similarity=0.406  Sum_probs=59.8

Q ss_pred             ccCCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         138 GVEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       138 ~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ...+....+.+|+.+.|.|.+.|.|.+ .+.|++||..+...        ...+|.|.++..+|+|.|+|.|.|..|...
T Consensus         6 ~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1           6 KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             CCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            344566689999999999999999855 79999999988543        346899999999999999999999988644

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.4e-14  Score=84.80  Aligned_cols=71  Identities=20%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      +..+.+|++++|.|.+.+     +.|++++            ......+..|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~------------~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~   75 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPR------------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI   75 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTT------------CCEEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeec------------ccceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence            457899999999999999     9999852            22333456899999999999999999999999888888


Q ss_pred             EEEEEecc
Q psy3045          99 VLTVTAPL  106 (267)
Q Consensus        99 ~l~V~~~~  106 (267)
                      .|.|...+
T Consensus        76 ~v~V~~~~   83 (84)
T d2nxyb2          76 DIVVLAFQ   83 (84)
T ss_dssp             EECEECCC
T ss_pred             EEEEEecC
Confidence            88887643

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.4e-13  Score=85.66  Aligned_cols=88  Identities=22%  Similarity=0.374  Sum_probs=65.8

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcce------eccccCCceEEEEeeEEEEeecccCCCee
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR------KVAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      |.+...+  ..+.+.+|+++.|.|.+.+     +.|++++.....      ........+....+++|.|.+++.+|+|.
T Consensus         2 ~sV~t~~--~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSC--SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             CCEEccC--CcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEE
Confidence            3344444  6789999999999999998     999986443211      11223345555667789999999999999


Q ss_pred             EEEEEEcCCCccEEEEEEEEE
Q psy3045          83 YLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        83 Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      |+|.+.|..|.....+.+.|.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999987776666654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.5e-14  Score=87.42  Aligned_cols=81  Identities=22%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc-EE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~   96 (267)
                      .++.+.+|+++.|.|.+.+     +.|++++.....................|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~   83 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ   83 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence            7899999999999999988     99999643211100000000001223579999999999999999999999874 56


Q ss_pred             EEEEEEE
Q psy3045          97 ETVLTVT  103 (267)
Q Consensus        97 ~~~l~V~  103 (267)
                      .+.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1rhfa1          84 PVWLTVE   90 (91)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            6777775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=89.17  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceecc---ccCCceE----EEEeeEEEEeecccCCC
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVA---VPLNDRV----KQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~---~~~~~~~----~~~~~~l~i~~~~~~d~   80 (267)
                      |...|  .++.+.+|++++|.|.+.+        +.|++++........   +......    ......|.|.+++.+|+
T Consensus         3 F~~~P--~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1           3 FIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             CCSCC--CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EeECC--ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            55666  7899999999999999985        899996322111000   0000111    12235799999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEecc
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAPL  106 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~~  106 (267)
                      |.|+|.|.|..|..+..+.|.|...+
T Consensus        81 G~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          81 GNYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCC
T ss_pred             eEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            99999999999998888999997644

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.46  E-value=8.7e-14  Score=87.49  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=59.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCC-ceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLN-DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ....+.+|+++.|.|.+.+     +.|++++....  ...... .......++|.|.+++.+|+|.|+|.+.|..|..+.
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   90 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH   90 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECC--GGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEecc--ccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEE
Confidence            3467899999999999988     99999643221  111111 122234468999999999999999999999998888


Q ss_pred             EEEEEE
Q psy3045          97 ETVLTV  102 (267)
Q Consensus        97 ~~~l~V  102 (267)
                      .+.|.|
T Consensus        91 ~~~l~V   96 (97)
T d3dara1          91 TYHLDV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.5e-13  Score=90.37  Aligned_cols=76  Identities=21%  Similarity=0.415  Sum_probs=64.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------------------------------------CCCe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------------------------------------NEPV  182 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------------------------------------~~~~  182 (267)
                      +....+.+|+.++|.|.+.|.|.+.+.|++++..+...                                      ....
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            45668999999999999999999999999987665321                                      1246


Q ss_pred             EEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       183 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            9999999999999999999999988888777763

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.2e-13  Score=87.48  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCC---CceEEEEECCccCCC------------------CCCCeEEeccCCCCCCeEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDGKPVPD------------------HNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~~~~~~------------------~~~~~l~i~~~~~~d~g~y~  197 (267)
                      ..+.+..+..|+++.|.|.+.|.|   .|.+.|+|++.....                  .....|.|.++..+|+|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            345566899999999999999987   579999998753210                  01246999999999999999


Q ss_pred             EEEEcCCCCceEEEEEEEec
Q psy3045         198 CVIRNEQESAQASGELKLGG  217 (267)
Q Consensus       198 C~~~~~~~~~~~~~~l~v~~  217 (267)
                      |.|.|..|....++.|.|..
T Consensus        85 C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEECSSCEEEECCEEEEEC
T ss_pred             EEEEeCCCEEEEEEEEEEEc
Confidence            99999999988888888863

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=84.23  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE   97 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   97 (267)
                      ....+.+|+++.|.|.+.+     +.|+++++...     ..........+.|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~   83 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccce-----eeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEE
Confidence            4566789999999999999     99998633211     1111122244689999999999999999999999998888


Q ss_pred             EEEEEE
Q psy3045          98 TVLTVT  103 (267)
Q Consensus        98 ~~l~V~  103 (267)
                      +.|.|.
T Consensus        84 ~~v~V~   89 (90)
T d1vcaa2          84 IQVEIY   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888875

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.44  E-value=5.2e-14  Score=88.10  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=59.0

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|.|...|  .++.+.+|+++.|.|.+.+      +.|++++....  .. .........+++|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~~~p--~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~--~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN--WQ-EHNAALRKDEGSLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCC--SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCC--TT-TTTEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecC--CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeee--ee-cceeeecccceEEEEeccChhcCeEEEEE
Confidence            58888887  7899999999999999987      89999643221  11 11112223456899999999999999999


Q ss_pred             EEcCCCcc
Q psy3045          87 VNNSVGGE   94 (267)
Q Consensus        87 ~~~~~~~~   94 (267)
                      |.|..|..
T Consensus        77 a~N~~G~~   84 (94)
T d1biha1          77 AETPAGVA   84 (94)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCEE
Confidence            99999863

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.44  E-value=8.2e-14  Score=85.76  Aligned_cols=73  Identities=15%  Similarity=0.307  Sum_probs=58.7

Q ss_pred             EEEecCCCEEEEeEeCCC-CCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEe
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLG  216 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~  216 (267)
                      ..+.+|+.++|.|.+.+. |.+.+.|+||+..+.. ..+..|.|..+..+|+|.|+|.|.|..+... ....|.|+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            368899999999998754 6779999999988754 3567899999999999999999999876543 24555554

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-14  Score=90.06  Aligned_cols=73  Identities=15%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------CCCCeEEeccCCCCCCe-EEEEEEEcCCCCceEEEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+..       .....|.|.++..+|.| .|+|.|.|..|....++.|.
T Consensus        11 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          11 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            44788999999999999999999999999877643       23467999999999999 79999999999887776654


Q ss_pred             E
Q psy3045         215 L  215 (267)
Q Consensus       215 v  215 (267)
                      |
T Consensus        91 V   91 (92)
T d2ifga1          91 V   91 (92)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.44  E-value=1.2e-13  Score=86.81  Aligned_cols=80  Identities=23%  Similarity=0.309  Sum_probs=57.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc-EE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~   96 (267)
                      .+..+.+|+++.|.|.+.+     +.|++++....................+|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            5789999999999999988     99999643221111111111111123589999999999999999999999874 45


Q ss_pred             EEEEEE
Q psy3045          97 ETVLTV  102 (267)
Q Consensus        97 ~~~l~V  102 (267)
                      .+.|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            677776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=90.53  Aligned_cols=93  Identities=20%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             cCCCcccCC---CCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec-----------------------cccC
Q psy3045          11 FKAPTFSSV---SDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV-----------------------AVPL   59 (267)
Q Consensus        11 ~~~P~~~~~---~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~-----------------------~~~~   59 (267)
                      ..||+|...   ..+..+.+.+|++++|.|.+.+     +.|++++.......                       ....
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            457877532   2236889999999999999999     99998632211100                       0001


Q ss_pred             CceEE----EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          60 NDRVK----QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        60 ~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      ..++.    .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            11222    123579999999999999999999999998888888875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.44  E-value=8.3e-14  Score=85.89  Aligned_cols=73  Identities=15%  Similarity=0.310  Sum_probs=57.6

Q ss_pred             EEEecCCCEEEEeEeCC-CCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEe
Q psy3045         144 QTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLG  216 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~  216 (267)
                      ..+.+|++++|.|.+.+ .|.+.+.|++||..+.. .....|.|..+..+|+|.|+|.|.|..+... ....|.|+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            36889999999999875 46779999999988754 3457899999999999999999999876433 23445443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-13  Score=83.94  Aligned_cols=75  Identities=17%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             ccCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCce-EEEEeeEEEEeecccCCCee
Q psy3045          10 GFKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDR-VKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        10 ~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +..+|.|...+  ..+.+.+|+++.|.|.+.+      +.|+|++...      ....+ ....+.+|.|.+++.+|+|.
T Consensus         3 P~~~P~~~~~~--~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l------~~~~~~~~~~~~~L~I~~v~~~D~G~   74 (93)
T d1n26a1           3 PRRCPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA------GSHPSRWAGMGRRLLLRSVQLHDSGN   74 (93)
T ss_dssp             SSCCCCCCCCT--TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSS------SCCCEEEEEESSEEEECSCCGGGCEE
T ss_pred             CCCCCcEEeCC--CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccc------cceeeEEecCCCEEEECCCChhcCEE
Confidence            44579999887  7899999999999999887      8999964322      22223 33456789999999999999


Q ss_pred             EEEEEEcCCC
Q psy3045          83 YLCVVNNSVG   92 (267)
Q Consensus        83 Y~C~~~~~~~   92 (267)
                      |+|.+.|..+
T Consensus        75 Y~C~a~n~~~   84 (93)
T d1n26a1          75 YSCYRAGRPA   84 (93)
T ss_dssp             EEEESSSSCS
T ss_pred             EEEEECCccc
Confidence            9999976543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-13  Score=84.08  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=58.5

Q ss_pred             EEEecCCCEEEEeEeCCC-CCceEEEEECCccCCCC-CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEe
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLG  216 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~  216 (267)
                      ..+.+|+.+.|.|.+.+. +...+.|||||..+... ....|.|..++.+|+|.|.|.|.|..+... ..+.|.|.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            378899999999999765 56699999999987543 567899999999999999999999765432 23455554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.9e-13  Score=84.03  Aligned_cols=75  Identities=27%  Similarity=0.606  Sum_probs=57.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-CceEEEEEC-CccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMKD-GKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~-~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      |....+..|+++.|.|.+.|.| .+.+.|+++ +..+...           ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            4455888999999999999987 479999984 4444321           23579999999999999999999998864


Q ss_pred             e-EEEEEEE
Q psy3045         208 Q-ASGELKL  215 (267)
Q Consensus       208 ~-~~~~l~v  215 (267)
                      . .++.|.|
T Consensus        87 ~~~tv~l~V   95 (97)
T d1epfa1          87 SEATVNVKI   95 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            3 3455544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.3e-13  Score=85.67  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +.|...|  .+..+.+|+++.|.|.+.+     +.|++++....    .....++ ...+++|.|.+++..|+|.|+|.+
T Consensus         2 ~~F~~~P--~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2           2 LMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI----LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             SEEEECC--SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGG----GGCCTTEEECTTSCEEETTCCGGGCEEEEEEE
T ss_pred             cEEEEcC--CCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccc----cccceeeeeeeeeeEEECCCCHHhCEEEEEEE
Confidence            5677777  7899999999999999988     99999633221    1111222 223457999999999999999999


Q ss_pred             EcCCCccEEEEEEEEE
Q psy3045          88 NNSVGGESVETVLTVT  103 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~  103 (267)
                      .|..+.......+.|.
T Consensus        76 ~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          76 RILARGEINFKDIQVI   91 (92)
T ss_dssp             EEGGGTEEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEEE
Confidence            9987776655555553

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-13  Score=84.53  Aligned_cols=85  Identities=18%  Similarity=0.239  Sum_probs=58.4

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeee-cccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFK-FIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~-~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      +|.|.. +  .+..+.+|+++.|.|.+.+     +.|.+ ..++.....  ....++.  ...++|.|.++..+|+|.|+
T Consensus         2 ~P~f~~-~--~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   76 (96)
T d2c9aa1           2 TPHFLR-I--QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL--KEIKVTSSRRFIASFNVVNTTKRDAGKYR   76 (96)
T ss_dssp             SCEECC-C--CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCE--EEEEEEETTEEEEEEEECSCCGGGCSEEE
T ss_pred             cCeecc-c--CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecC--CceeEEEeecCceEEEECCCCHHHCeEEE
Confidence            688973 5  7899999999999999988     44333 222211100  0001111  12357999999999999999


Q ss_pred             EEEEcCCCcc-EEEEEEEE
Q psy3045          85 CVVNNSVGGE-SVETVLTV  102 (267)
Q Consensus        85 C~~~~~~~~~-~~~~~l~V  102 (267)
                      |.+.|..|.. +....|.|
T Consensus        77 C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          77 CMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            9999999975 45567766

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.5e-13  Score=83.58  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=58.6

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCC-ceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ..+....+.+|+++.|.|.+.+.|+ +++.|+|++..+...      .+..|.|.++..+|+|.|+|.|.|...   .+.
T Consensus        11 ~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~---~t~   87 (93)
T d1n26a1          11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA---GTV   87 (93)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCS---CEE
T ss_pred             eCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCccc---cEE
Confidence            3445568889999999999998764 699999999888654      246899999999999999999987542   344


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .+.|
T Consensus        88 ~l~V   91 (93)
T d1n26a1          88 HLLV   91 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=87.71  Aligned_cols=89  Identities=22%  Similarity=0.350  Sum_probs=65.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcce------eccccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR------KVAVPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ++.+...+  +.+.+.+|+++.|.|.+.+     +.|++++.....      ........+....+++|.|.+++.+|+|
T Consensus         4 ~v~V~~~~--~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (105)
T d1nbqa1           4 SVTVHSSE--PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG   81 (105)
T ss_dssp             CCEEECSC--SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCS
T ss_pred             ceEEECCC--CeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEeccccccee
Confidence            34444444  6788999999999999998     999997433221      1112233445556678999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEE
Q psy3045          82 KYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      .|+|.+.|..|.....+.|.|.
T Consensus        82 ~Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          82 TYTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEEEETTSSCEECCEEECC
T ss_pred             eEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999987766666543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.3e-13  Score=81.79  Aligned_cols=69  Identities=14%  Similarity=0.325  Sum_probs=57.8

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ..+.+|+++.|.|.+.+ +.+.+.|+++|..+...       .+..|.|.++..+|+|.|+|.|.|..+.......+
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            47889999999999988 66799999999887543       34679999999999999999999988776554443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-13  Score=87.93  Aligned_cols=71  Identities=27%  Similarity=0.572  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEeEeC-CCCCceEEEEECCccCCCC----------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         145 TIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .+..|+.+.|.|.+. |.|.+.+.|++++..+...                ....|.|.++..+|.|.|+|.|.|..|..
T Consensus        13 ~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~   92 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP   92 (104)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             EEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCce
Confidence            678899999999974 7899999999999887432                23578999999999999999999999987


Q ss_pred             eEEEEEEE
Q psy3045         208 QASGELKL  215 (267)
Q Consensus       208 ~~~~~l~v  215 (267)
                      ..+..+.+
T Consensus        93 ~~s~~v~v  100 (104)
T d1nbqa2          93 MTSNAVRM  100 (104)
T ss_dssp             EECCCBCC
T ss_pred             EEEEEEEE
Confidence            76554444

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.4e-14  Score=88.88  Aligned_cols=75  Identities=23%  Similarity=0.416  Sum_probs=61.7

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC------------C-----CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------------H-----NEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~------------~-----~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ....+.+|+++.|.|.+.+.|.|.+.|++++..+..            .     ....|.|.++..+|+|.|+|.|.|..
T Consensus        12 ~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   91 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG   91 (105)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETT
T ss_pred             CeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECC
Confidence            344788999999999999999999999997765421            0     13579999999999999999999999


Q ss_pred             CCceEEEEEEEe
Q psy3045         205 ESAQASGELKLG  216 (267)
Q Consensus       205 ~~~~~~~~l~v~  216 (267)
                      |.......+.+.
T Consensus        92 G~~~~~~~v~v~  103 (105)
T d1nbqa1          92 GNSYGEVKVKLI  103 (105)
T ss_dssp             SSCEECCEEECC
T ss_pred             CCEEEEEEEEEE
Confidence            988777666654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=4.3e-13  Score=85.21  Aligned_cols=76  Identities=17%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCC-----------------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-----------------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .....+.+|+++.|.|.+.+.|.+.+.|++++.....                 ...++|.|.++..+|+|.|+|.|.|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence            4455889999999999999999999999986654321                 02367999999999999999999999


Q ss_pred             CCCceEEEEEEEe
Q psy3045         204 QESAQASGELKLG  216 (267)
Q Consensus       204 ~~~~~~~~~l~v~  216 (267)
                      .|.......+.+.
T Consensus        88 ~g~~~~~~~v~v~  100 (102)
T d1f97a1          88 GGQNYGEVSIHLT  100 (102)
T ss_dssp             TSSSEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9988877776664

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=6.8e-13  Score=83.19  Aligned_cols=73  Identities=26%  Similarity=0.441  Sum_probs=59.6

Q ss_pred             eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELK  214 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~  214 (267)
                      +..+.+|+++.|.|.+.+ +.+.+.|++++..+...       ....|.|..+..+|.|.|+|.|.|..+...+ .+.|.
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~   90 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD   90 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEE
Confidence            347889999999999865 56799999999988654       3568999999999999999999999876543 45666


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      |.
T Consensus        91 V~   92 (96)
T d1l6za2          91 II   92 (96)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=8.8e-13  Score=82.84  Aligned_cols=77  Identities=27%  Similarity=0.397  Sum_probs=56.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ....+.+|+++.|.|.+.+      +.|++++....    .....++..     ..++|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~----~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL----SPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEE----CCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeee----eeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            5778999999999999887      99998532111    111222221     23589999999999999999999999


Q ss_pred             Ccc-EEEEEEEEE
Q psy3045          92 GGE-SVETVLTVT  103 (267)
Q Consensus        92 ~~~-~~~~~l~V~  103 (267)
                      |.. +..+.|.|.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            864 456667664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.4e-13  Score=86.41  Aligned_cols=72  Identities=28%  Similarity=0.473  Sum_probs=58.4

Q ss_pred             EEecCCCEEEEeEeC-CCCCceEEEEECCccCCCC-----------------CCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+..|+++.|.|.+. |.|.+.+.|++++..+...                 ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            577899999999985 7899999999998766321                 2357899999999999999999999988


Q ss_pred             ceEEEEEEEe
Q psy3045         207 AQASGELKLG  216 (267)
Q Consensus       207 ~~~~~~l~v~  216 (267)
                      ..++..+.+.
T Consensus        93 ~~~s~~v~l~  102 (110)
T d1f97a2          93 AMRSEAAHMD  102 (110)
T ss_dssp             CEECCCEEEE
T ss_pred             EEEEEEEEEE
Confidence            7765444443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-13  Score=85.29  Aligned_cols=77  Identities=17%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCC-CceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .+....+..|+++.|.|.+.|.| .|.++|+|++..+...              ....|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            34455889999999999999998 5899999988765311              11358999999999999999999998


Q ss_pred             CCceE-EEEEEEe
Q psy3045         205 ESAQA-SGELKLG  216 (267)
Q Consensus       205 ~~~~~-~~~l~v~  216 (267)
                      |.... +..+.|.
T Consensus        89 G~~~s~~~~l~V~  101 (104)
T d2aw2a1          89 NLIESHSTTLYVT  101 (104)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEE
Confidence            86543 5566654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.40  E-value=2.9e-13  Score=83.35  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=54.5

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~   95 (267)
                      +...+.+|++++|.|.+.+      +.|++++...          .....+..|.|.+++.+|+|.|+|.+.|..+. .+
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~----------~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR----------KYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE----------EEEEECCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEccccc----------ceeccccccEECccceeccceEEEEEEeCCCCeEE
Confidence            4567899999999999864      9999963211          11234457999999999999999999998776 34


Q ss_pred             EEEEEEEEe
Q psy3045          96 VETVLTVTA  104 (267)
Q Consensus        96 ~~~~l~V~~  104 (267)
                      ..+.|+|.+
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            567777754

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.1e-13  Score=81.88  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=57.1

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      |.|...|  .+..+.+|+++.|.|.+.+      ++|++++....      ..     ....+.|.....+|+|.|+|.|
T Consensus         2 P~f~~~P--~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~------~~-----~~~~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG------GP-----APSPSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECS------CS-----EESSEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeC--CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECC------CC-----CCcceEEecCCccccEEEEEEE
Confidence            7888888  7899999999999999988      89999632111      01     1234566677778999999999


Q ss_pred             EcCCCcc-EEEEEEEE
Q psy3045          88 NNSVGGE-SVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~-~~~~~l~V  102 (267)
                      .|..|.. +..+.|.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999863 44566655

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.5e-13  Score=85.13  Aligned_cols=71  Identities=18%  Similarity=0.360  Sum_probs=59.4

Q ss_pred             EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------------------CCeEEeccCCCCCCe-EEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------------------EPVFRIDSVRKEDKG-MYQCVIR  201 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------------------~~~l~i~~~~~~d~g-~y~C~~~  201 (267)
                      ..+..|+++.|.|.+.+.|.+.+.|+++|..+....                     .+.|.|..++.+|.| .|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            467789999999999999999999999998775321                     246999999999999 5999999


Q ss_pred             cCCCCceEEEEEE
Q psy3045         202 NEQESAQASGELK  214 (267)
Q Consensus       202 ~~~~~~~~~~~l~  214 (267)
                      |..|.....+.|.
T Consensus        92 N~~G~~~~~i~L~  104 (107)
T d1iray3          92 NTHGIDAAYIQLI  104 (107)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE
Confidence            9999876666553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.39  E-value=1.9e-13  Score=84.08  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc-E
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-S   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~   95 (267)
                      +...+.+|++++|.|.+.+      +.|+|++...          .....+..|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~----------~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSK----------KFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEE----------EEESSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccc----------cccccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            3556889999999999865      9999963211          111124579999999999999999999988763 4


Q ss_pred             EEEEEEEEe
Q psy3045          96 VETVLTVTA  104 (267)
Q Consensus        96 ~~~~l~V~~  104 (267)
                      ..+.|.|..
T Consensus        78 ~~v~l~V~~   86 (88)
T d2fcba2          78 KPVTITVQA   86 (88)
T ss_dssp             CCEEEEECC
T ss_pred             eeEEEEEeC
Confidence            566777754

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.3e-13  Score=84.09  Aligned_cols=88  Identities=22%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeE
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y   83 (267)
                      |.|...+  ....+.+|+++.|.|.+.+      +.|++++......... ......    .....|.|.++..+|+|.|
T Consensus         4 ~~fi~~~--~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   80 (104)
T d2aw2a1           4 QLYIKRQ--SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLED-RQTSWKEEKNISFFILHFEPVLPNDNGSY   80 (104)
T ss_dssp             EECCCTT--EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCS-SCEEEEECSSCEEEEEEESSCCGGGCEEE
T ss_pred             cEEEecC--CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccce-eeeeEEecCCceEEEEEEccccHHHCCeE
Confidence            4566555  7889999999999999987      9999974332211111 011111    1224699999999999999


Q ss_pred             EEEEEcCCCcc-EEEEEEEEEe
Q psy3045          84 LCVVNNSVGGE-SVETVLTVTA  104 (267)
Q Consensus        84 ~C~~~~~~~~~-~~~~~l~V~~  104 (267)
                      +|.|.|..|.. +..+.|.|.+
T Consensus        81 ~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          81 RCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEEEE
Confidence            99999998874 4567777764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=85.90  Aligned_cols=84  Identities=19%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCe-eEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG-KYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~   86 (267)
                      .|.|...+  .+..+.+|+++.|.|.+.+     +.|++++.......    ..........|.|.+++.+|.| .|+|.
T Consensus         2 ~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~~Y~C~   75 (92)
T d2ifga1           2 VPTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV----MKSGGLPSLGLTLANVTSDLNRKNVTCW   75 (92)
T ss_dssp             CCEEEEEC--CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE----CCCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCEEEEeC--CCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee----eeeeeccceeEEEccccccccceEEEEE
Confidence            47788777  6889999999999999998     99999643222111    1111224468999999999999 79999


Q ss_pred             EEcCCCccEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTV  102 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V  102 (267)
                      |.|..|.....+.|.|
T Consensus        76 a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          76 AENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEETTEECCEEECCCC
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9999998877776654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.7e-13  Score=85.07  Aligned_cols=85  Identities=24%  Similarity=0.332  Sum_probs=62.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCce--EEEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.+..    .+..+.+|++++|.|.+.+    +.|++++...      ....+  +....++|.|.+++.+|+|.|+|
T Consensus         4 ~~P~i~~----~~~~v~~g~~v~l~C~~~~~~~~v~W~~~~~~l------~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C   73 (96)
T d1l6za2           4 TQPFLQV----TNTTVKELDSVTLTCLSNDIGANIQWLFNSQSL------QLTERMTLSQNNSILRIDPIKREDAGEYQC   73 (96)
T ss_dssp             CCCCEEC----SCSEECTTSCEEEEECCCCSSCEEEEEETTEEC------CCCTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             CCCeEEc----CceEEeCCCeEEEEEccCCCCCCEEEEEeeeec------ccccceeccCCceEEEEeccchhhceEEEE
Confidence            3566653    4567899999999999888    9999964321      22222  22244689999999999999999


Q ss_pred             EEEcCCCcc-EEEEEEEEEecc
Q psy3045          86 VVNNSVGGE-SVETVLTVTAPL  106 (267)
Q Consensus        86 ~~~~~~~~~-~~~~~l~V~~~~  106 (267)
                      .|.|..|.. +..+.|.|...|
T Consensus        74 ~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          74 EISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EEESSSCCEECCCCEEEECCSC
T ss_pred             EEEeCCCCeEEEeEEEEEEcCC
Confidence            999998875 456788886654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.37  E-value=3e-13  Score=82.43  Aligned_cols=69  Identities=17%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCce-EEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +...+....+.+|++++|.|.+.+.|.+. +.|++++..+. .....|.|.++..+|+|.|+|.+.+...+
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-SSCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee-ecceeeEecCCcccCCEEEEEEccCCCcc
Confidence            44445556899999999999999988664 55677877664 45678999999999999999999875443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.8e-13  Score=83.67  Aligned_cols=69  Identities=14%  Similarity=0.288  Sum_probs=59.2

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      .++...|.|.+.|.|.|.+.|++||..+..+.              .+.|.|..++.+|.|.|+|.|.|..|....++.+
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            46777899999999999999999999886542              1469999999999999999999999988888777


Q ss_pred             EEe
Q psy3045         214 KLG  216 (267)
Q Consensus       214 ~v~  216 (267)
                      .+.
T Consensus        95 ~V~   97 (103)
T d1wwbx_          95 HFM   97 (103)
T ss_dssp             CCS
T ss_pred             EEE
Confidence            765

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=82.27  Aligned_cols=81  Identities=27%  Similarity=0.327  Sum_probs=64.5

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      ..+.+.+|+.+.|.|.+..      +.|++++...  ........++...+++|.|.+++.+|+|.|+|.+.|..|....
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT--PVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTS--BCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCccc--ccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            4678889999999998854      9999964322  2222334456667789999999999999999999999999888


Q ss_pred             EEEEEEEec
Q psy3045          97 ETVLTVTAP  105 (267)
Q Consensus        97 ~~~l~V~~~  105 (267)
                      .+.|.|...
T Consensus        88 ~~~L~V~~~   96 (101)
T d1iray1          88 KISAKFVEN   96 (101)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            899988753

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-13  Score=82.25  Aligned_cols=77  Identities=16%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +|.|.....+.++.+.+|+++.|.|.+.|     +.|++++.  ....             .+.+.+++.+|+|.|+|.|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~--~~~~-------------~~~~~~v~~~d~G~Y~C~A   66 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT--FPLP-------------IGESVTVTRDLEGTYLCRA   66 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT--EECC-------------TTSCEECCGGGCEEEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeec--ccee-------------eeeeeccccCCCCEEEEEE
Confidence            46664443336889999999999999999     99999632  1110             1234567899999999999


Q ss_pred             EcCCCccEEEEEEEEEe
Q psy3045          88 NNSVGGESVETVLTVTA  104 (267)
Q Consensus        88 ~~~~~~~~~~~~l~V~~  104 (267)
                      .|..|..+..+.|.|..
T Consensus        67 ~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          67 RSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCEEEEEEEEEEEC
Confidence            99999888888888864

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-12  Score=83.37  Aligned_cols=69  Identities=17%  Similarity=0.324  Sum_probs=57.1

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCC-------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL  215 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  215 (267)
                      +....|.|.+.|.|.|.+.|++|+..+....             .+.|.|..++.+|+|.|+|.|.|..|....++.+.|
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            3445678899999999999999999886432             245899999999999999999999998887777776


Q ss_pred             ec
Q psy3045         216 GG  217 (267)
Q Consensus       216 ~~  217 (267)
                      ..
T Consensus        97 ~~   98 (105)
T d1wwca_          97 LK   98 (105)
T ss_dssp             SC
T ss_pred             Ee
Confidence            53

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.9e-13  Score=82.83  Aligned_cols=74  Identities=24%  Similarity=0.210  Sum_probs=55.8

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES   95 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~   95 (267)
                      +...+.+|++++|.|.+.+      +.|++++....      .    ......|.|.+++.+|+|.|+|.+.|..+. .+
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~------~----~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK------Y----WYENHNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC------S----CCCSSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccc------c----ccccceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            4557889999999999866      99999632111      0    012347999999999999999999998765 35


Q ss_pred             EEEEEEEEecc
Q psy3045          96 VETVLTVTAPL  106 (267)
Q Consensus        96 ~~~~l~V~~~~  106 (267)
                      ..+.|.|...|
T Consensus        78 ~~v~i~V~~~P   88 (89)
T d1f2qa2          78 EPLNITVIKAP   88 (89)
T ss_dssp             CCEEEEEECSC
T ss_pred             eeEEEEEEeCC
Confidence            66778887654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.35  E-value=3.8e-13  Score=82.17  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|.+...|  ....+.+|++|+|.|.+.+      +.|++++...      .      ..+..|.|.+++.+|+|.|+|.
T Consensus         4 kp~i~~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~------~------~~~~~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           4 KAVLKLEP--QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLI------P------THTQPSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             BCEEEEES--CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEEC------T------TCCSSEEEEECCGGGCEEEEEE
T ss_pred             CCEEEECC--CCeEEcCCCeEEEEEEEeeccceeEEEeecccccc------c------ccccceEEeeccccCCcEEEEE
Confidence            45666666  6788999999999999887      8888853211      1      1234789999999999999999


Q ss_pred             EEcCCCccEEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTVT  103 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~  103 (267)
                      +.+..+.  ..+.|.|.
T Consensus        70 a~ns~~S--~~v~l~V~   84 (85)
T d2fcba1          70 TGQTSLS--DPVHLTVL   84 (85)
T ss_dssp             CTTSBCC--CCEEEEEE
T ss_pred             CCCCccc--ccEEEEEE
Confidence            9876443  34455553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=1.8e-12  Score=82.59  Aligned_cols=68  Identities=21%  Similarity=0.291  Sum_probs=56.6

Q ss_pred             eEEEecCCCEEEEeEe-CCCCCceEEEEECCccCCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         143 VQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..         ...+.|.|.++..+|+|.|+|.|.|..+....+
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            3478999999999997 5778999999999877532         234679999999999999999999988775543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.9e-13  Score=84.05  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=57.2

Q ss_pred             EEecCCCEE---EEeEeCCCCCceEEEEECCccCCCCC----------------CCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQ---FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~---l~C~~~~~p~~~~~W~~~~~~~~~~~----------------~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+..|....   +.|.+.|.|.|.+.|++|+..+..+.                ...|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            344455545   55589999999999999999886432                14589999999999999999999999


Q ss_pred             CceEEEEEEEe
Q psy3045         206 SAQASGELKLG  216 (267)
Q Consensus       206 ~~~~~~~l~v~  216 (267)
                      ....++.+.+.
T Consensus        88 ~~~~~i~v~v~   98 (107)
T d1he7a_          88 QASASIMAAFM   98 (107)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEEEEE
Confidence            88777777665

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=2.7e-13  Score=85.28  Aligned_cols=68  Identities=25%  Similarity=0.471  Sum_probs=54.0

Q ss_pred             CceEEEecC---CCEEEEeEeCCCCCceEEEEECCccCCCCC--------CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         141 PTVQTIDFG---RPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       141 ~~~~~~~~g---~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      +....+..|   +++.|.|.+.|.|.|.+.|++|+..+....        ...|.+..+..+|+|.|+|.|.|..|...
T Consensus        11 P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~   89 (97)
T d1cs6a1          11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVV   89 (97)
T ss_dssp             CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEE
T ss_pred             CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEE
Confidence            333355444   789999999999999999999998886432        34567777888999999999999998653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.4e-12  Score=83.98  Aligned_cols=89  Identities=26%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEec-c-----eeeeecccCcceecc----ccCCceE--EEEeeEEEEeecccC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVA----VPLNDRV--KQVSGTLIIKEAKVE   78 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~----~~~~~~~--~~~~~~l~i~~~~~~   78 (267)
                      +..|.+....     .+.+|+++.|.|.+. +     ++|++++........    .......  ....+.|.|.+++.+
T Consensus         3 P~~p~~~~~~-----~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~   77 (110)
T d1f97a2           3 PSKPTISVPS-----SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF   77 (110)
T ss_dssp             CCCCEEECCS-----EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGG
T ss_pred             CccceeCCCC-----EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCcc
Confidence            4445554433     688999999999985 4     999996332111100    0111111  123357999999999


Q ss_pred             CCeeEEEEEEcCCCccEE--EEEEEEEe
Q psy3045          79 DSGKYLCVVNNSVGGESV--ETVLTVTA  104 (267)
Q Consensus        79 d~G~Y~C~~~~~~~~~~~--~~~l~V~~  104 (267)
                      |+|.|+|.|.|..|....  .+.|.|.+
T Consensus        78 D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          78 DSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             GCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            999999999999987644  45566554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5e-13  Score=81.02  Aligned_cols=75  Identities=28%  Similarity=0.358  Sum_probs=55.4

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|.|...|  ....+.+|++++|.|.+.+      +.|++++..            +...+..|.|.+++.+|+|.|+|.
T Consensus         1 KP~It~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           1 KPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL------------SEETNSSLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEETTEE------------CSCCSSEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcC--CCeEEeCCCeEEEEEEEeeeeeecceeeeeeeee------------eecccceeEECCCChhhCCcEEEE
Confidence            47788877  6778999999999999998      667774211            111335799999999999999999


Q ss_pred             EEcCCCccEEEEEEEEE
Q psy3045          87 VNNSVGGESVETVLTVT  103 (267)
Q Consensus        87 ~~~~~~~~~~~~~l~V~  103 (267)
                      +.+...  +..+.|.|.
T Consensus        67 a~~s~~--S~~v~l~V~   81 (82)
T d1f2qa1          67 HQQVNE--SEPVYLEVF   81 (82)
T ss_dssp             CTTSSC--CCCEEEEEE
T ss_pred             ecCCCC--cccEEEEEE
Confidence            977544  334556553

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.1e-12  Score=79.02  Aligned_cols=75  Identities=25%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      .+..+.+|+++.|.|.+.+    +.|++++....  ........+..  ...+|.|.++..+|+|.|+|.+.|    ...
T Consensus         8 ~~~~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~   81 (90)
T d1x44a1           8 EDTTAYCGERVELECEVSEDDANVKWFKNGEEII--PGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS   81 (90)
T ss_dssp             CCEEEETTEEEEEEEECSSSSCCCEEEETTEECC--CSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE
T ss_pred             CCEEEeCCCcEEEEEEECCCCceEEEEEeecccC--CCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceE
Confidence            7899999999999999977    99999643221  11111112222  235899999999999999999965    344


Q ss_pred             EEEEEEE
Q psy3045          97 ETVLTVT  103 (267)
Q Consensus        97 ~~~l~V~  103 (267)
                      +..|.|.
T Consensus        82 ~a~l~V~   88 (90)
T d1x44a1          82 SAKLSVD   88 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5566664

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=79.54  Aligned_cols=65  Identities=23%  Similarity=0.391  Sum_probs=50.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      |....+.+|+.++|.|.+.+.|.+ .+.|++++..+. .....|.|..++.+|+|.|.|.|.+...+
T Consensus         8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C~a~~s~~S   73 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGEYKCQHQQVNES   73 (82)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECS-CCSSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee-cccceeEECCCChhhCCcEEEEecCCCCc
Confidence            444578899999999999998866 455678887775 45678999999999999999999876543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=78.90  Aligned_cols=73  Identities=18%  Similarity=0.369  Sum_probs=57.8

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ..+.+..+..|+++.|.|.+. .|.+.+.|++++.++..+           ....|.|.++..+|+|.|+|.|.|.    
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----
Confidence            345566899999999999984 688899999999877543           2357999999999999999999774    


Q ss_pred             eEEEEEEEe
Q psy3045         208 QASGELKLG  216 (267)
Q Consensus       208 ~~~~~l~v~  216 (267)
                      ..++.+.|.
T Consensus        80 ~~~a~l~V~   88 (90)
T d1x44a1          80 QSSAKLSVD   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            445566664

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=79.30  Aligned_cols=74  Identities=23%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.+...|  ....+.+|++++|.|.+.+      +.|++++.  .          +.....+|.|.+++.+|+|.|+|
T Consensus         4 Pkpvi~~~P--~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~--~----------~~~~~~~l~i~~~~~~d~G~Y~C   69 (84)
T d1fnla1           4 PKAVVFLEP--QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNES--L----------ISSQASSYFIDAATVNDSGEYRC   69 (84)
T ss_dssp             CCCEEEEES--CCSEEETTCCEEEEEECCCBTTBCCCEEEETTE--E----------EESSCSEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEECC--CCcEEeCCCeEEEEEEeccCCCCeEEEEeeece--e----------eeecceeeEecCCcccCCEEEEE
Confidence            347777777  6789999999999999988      66676421  1          11234579999999999999999


Q ss_pred             EEEcCCCccEEEEEEE
Q psy3045          86 VVNNSVGGESVETVLT  101 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~  101 (267)
                      .+.+...  +..+.|.
T Consensus        70 ~a~~s~~--S~~v~L~   83 (84)
T d1fnla1          70 QTNLSTL--SDPVQLE   83 (84)
T ss_dssp             ECSSSCC--CCCEEEE
T ss_pred             EccCCCc--cccEEEE
Confidence            9976544  3334444

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=79.20  Aligned_cols=69  Identities=22%  Similarity=0.450  Sum_probs=54.7

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG  211 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  211 (267)
                      ....+.+|+.+.|.|.+. .|.+.+.|++||..+..+.          ...|.|.++..+|+|.|+|.|.|.    ..++
T Consensus        14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~s~   88 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE----KCST   88 (94)
T ss_dssp             SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE----EECC
T ss_pred             CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE----EEEE
Confidence            344788999999999985 5888999999999886432          357999999999999999999764    3344


Q ss_pred             EEEE
Q psy3045         212 ELKL  215 (267)
Q Consensus       212 ~l~v  215 (267)
                      .|.|
T Consensus        89 ~l~V   92 (94)
T d1pd6a_          89 ELFV   92 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.3e-11  Score=81.35  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcce-----------eccccCCceEEE-------EeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSR-----------KVAVPLNDRVKQ-------VSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~-----------~~~~~~~~~~~~-------~~~~l~i~~~~   76 (267)
                      ..+.+.+|++|+|.|.+..        +.|++...+...           .....+..|...       .+.+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            5689999999999999754        889986322110           111112233332       24689999999


Q ss_pred             cCCCeeEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      .+|+|.|+|.+.+..+..+..+.|.|.++..
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            9999999999999887788888888887543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5e-12  Score=79.12  Aligned_cols=75  Identities=24%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEE--C-CccCCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK--D-GKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~--~-~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ..+..+.+|+++.|.|.+.|.|.|.+.|++  + +..+..         .....|.|.++..+|+|.|+|.|.|..|...
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   87 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI   87 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence            456689999999999999999877555433  2 222211         1135699999999999999999999998765


Q ss_pred             EE-EEEEE
Q psy3045         209 AS-GELKL  215 (267)
Q Consensus       209 ~~-~~l~v  215 (267)
                      .. ..|.|
T Consensus        88 s~~a~L~V   95 (96)
T d2c9aa1          88 SNYAELVV   95 (96)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            54 56665

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=2.1e-12  Score=82.17  Aligned_cols=78  Identities=21%  Similarity=0.292  Sum_probs=55.9

Q ss_pred             cccCCCCceeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEE
Q psy3045          15 TFSSVSDIIRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        15 ~~~~~~~~~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .|...+. ..+.+.+|+++.|.|.+ .+     +.|++++.....    ....+..  ..+++|.|.+++.+|+|.|+|.
T Consensus         5 ~F~~~~~-~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (105)
T d1cs6a2           5 EFSAEER-DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDLGNYSCF   79 (105)
T ss_dssp             CCCSSCC-CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBC----CCCSSEEECTTTCCEEESSCCGGGCEEEEEE
T ss_pred             cccCCCC-CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccc----cccceeeeecCCCEEeecccccccCcEEEEE
Confidence            3555552 57899999999999997 44     999996432211    1122222  2356899999999999999999


Q ss_pred             EEcCCCccEEE
Q psy3045          87 VNNSVGGESVE   97 (267)
Q Consensus        87 ~~~~~~~~~~~   97 (267)
                      |.|..|.....
T Consensus        80 a~N~~g~~~~~   90 (105)
T d1cs6a2          80 ATSHIDFITKS   90 (105)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEECCCCEEEE
Confidence            99988775544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-12  Score=79.30  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             EEEecCCCEEEEeEeC-CCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL  213 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  213 (267)
                      ....+|+.+.|.|.+. +.|.+.+.|++++..+...         ....|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L   91 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA   91 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEE
Confidence            3677899999999875 5688999999998765321         24689999999999999999999999988888888


Q ss_pred             EEec
Q psy3045         214 KLGG  217 (267)
Q Consensus       214 ~v~~  217 (267)
                      .|..
T Consensus        92 ~V~~   95 (101)
T d1iray1          92 KFVE   95 (101)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.1e-12  Score=79.00  Aligned_cols=65  Identities=23%  Similarity=0.414  Sum_probs=55.0

Q ss_pred             EEecCCCEEEEe------EeCCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         145 TIDFGRPAQFTC------KYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       145 ~~~~g~~v~l~C------~~~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+..|....|.|      .+.+.|.|.+.|++|+.++....      +..|.|.++..+|+|.|+|.|.|..+....
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~   86 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY   86 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEE
Confidence            678899999999      46788999999999999986542      468999999999999999999987765443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=78.77  Aligned_cols=70  Identities=20%  Similarity=0.372  Sum_probs=56.4

Q ss_pred             cccCCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         137 AGVEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +...+....+.+|+.++|.|.+.+.+.+ .+.|++||..+.. ....|.|..+..+|+|.|+|.+.|..++.
T Consensus         7 i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~   77 (85)
T d2fcba1           7 LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-HTQPSYRFKANNNDSGEYTCQTGQTSLSD   77 (85)
T ss_dssp             EEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-CCSSEEEEECCGGGCEEEEEECTTSBCCC
T ss_pred             EEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc-cccceEEeeccccCCcEEEEECCCCcccc
Confidence            3344555588999999999999988755 6889999988754 46789999999999999999998765443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8e-13  Score=84.25  Aligned_cols=86  Identities=22%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEec-c-----eeeeecccCcceecccc---CCce--EEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVAVP---LNDR--VKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~~~---~~~~--~~~~~~~l~i~~~~~~d~G   81 (267)
                      ||.+....  ....+.+|++++|.|.+. +     +.|++++..........   ...+  .....+.|.|.+++.+|+|
T Consensus         2 PP~~p~~~--~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G   79 (104)
T d1nbqa2           2 PPSKPTVN--IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG   79 (104)
T ss_dssp             CCCCCCCC--CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred             CCcccccC--CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence            45554444  345788999999999985 4     99999744322111111   1111  1122457999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEE
Q psy3045          82 KYLCVVNNSVGGESVETVL  100 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l  100 (267)
                      .|+|.|.|..|....+..+
T Consensus        80 ~Y~C~a~N~~G~~~~s~~v   98 (104)
T d1nbqa2          80 EYSCEARNGYGTPMTSNAV   98 (104)
T ss_dssp             CEEEEEECSSSCCEECCCB
T ss_pred             EEEEEEEECCCceEEEEEE
Confidence            9999999999987554433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.7e-12  Score=80.08  Aligned_cols=86  Identities=10%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .||.+.+.+  ....+.+|++++|.|.+.+        +.|++++.......  ...   ....+.|.|.....+|.|.|
T Consensus         3 ~P~~v~i~p--~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~--~~~---~~~~s~l~i~~~~~dd~g~y   75 (103)
T d1iama1           3 TPERVELAP--LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP--AVG---EPAEVTTTVLVRRDHHGAQF   75 (103)
T ss_dssp             CCSEEEECC--CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE--CCT---TTEEEEEEEECCSSCSSCEE
T ss_pred             CCCceEEeC--CCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc--ccc---ccceEEEEEeeehhHCCCEE
Confidence            366777777  5667899999999999987        67998633221111  111   11345789999999999999


Q ss_pred             EEEEEcCCCccEEEEEEEEEe
Q psy3045          84 LCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        84 ~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|.|.|..|.......+.+..
T Consensus        76 tC~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          76 SCRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             EEEEEEECGGGTSCEEEEECC
T ss_pred             EEEEEeCCCCccCeEeeeEcC
Confidence            999999988766666666554

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.4e-12  Score=80.73  Aligned_cols=73  Identities=14%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             EEEecCCCEEEEeEeCCC-CCc--eEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045         144 QTIDFGRPAQFTCKYEGN-PVK--TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK  214 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~-p~~--~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  214 (267)
                      ..+.+|+.++|.|.+.|. |.+  .+.|++++..+...      ..+.|.|.....+|.|.|+|.|.|..+.......+.
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~   93 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN   93 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEE
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeee
Confidence            378889999999999874 544  68899999877432      235788998899999999999999988776666666


Q ss_pred             Ee
Q psy3045         215 LG  216 (267)
Q Consensus       215 v~  216 (267)
                      +.
T Consensus        94 ~s   95 (103)
T d1iama1          94 TS   95 (103)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=1.4e-12  Score=81.92  Aligned_cols=82  Identities=27%  Similarity=0.409  Sum_probs=58.0

Q ss_pred             CCcccCCCCceeEEecCC---CeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeE
Q psy3045          13 APTFSSVSDIIRFKKPGG---ESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g---~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y   83 (267)
                      +|.|...|  .+..+.+|   +++.|.|.+.+     +.|++++....    .....++.. .+..|.|..+..+|+|.|
T Consensus         4 ~P~f~~~P--~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           4 GPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK----MGPDSRYRLVAGDLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEECC--CCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECC----CSTTSSEEEETTEEEEESCCHHHHCEEE
T ss_pred             CCEEEEeC--CCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeecc----CCCCceEEeeeeeEEEEecccccCCEEE
Confidence            58888887  56666655   79999999998     99999643221    111222222 335678888999999999


Q ss_pred             EEEEEcCCCcc-EEEEEE
Q psy3045          84 LCVVNNSVGGE-SVETVL  100 (267)
Q Consensus        84 ~C~~~~~~~~~-~~~~~l  100 (267)
                      +|.|.|..|.. +..+.|
T Consensus        78 ~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          78 QCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEETTEEEECCCEEE
T ss_pred             EEEEEECCCEEEEEEEEE
Confidence            99999999874 344444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.25  E-value=1.5e-12  Score=80.11  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=58.2

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA  209 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  209 (267)
                      .+..+..+.+|+++.|.|.+ +.|.+.+.|++||..+..+         ....|.|.++..+|+|.|+|.|.|..+    
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----   80 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----   80 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----
Confidence            34566689999999999997 4688899999999988653         346799999999999999999877533    


Q ss_pred             EEEEEEe
Q psy3045         210 SGELKLG  216 (267)
Q Consensus       210 ~~~l~v~  216 (267)
                      ++.|.|.
T Consensus        81 sa~l~V~   87 (89)
T d1tiua_          81 AANLKVK   87 (89)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            3445553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.1e-12  Score=77.22  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=55.4

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      +...+.+|+++.|.|.+.+    +.|++++......    ........+++|.|.+++.+|+|.|+|.|.|..+......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g~~~~v~W~~~g~~l~~~----~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAE----SPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEETTSCEEECCCCSCTTCEEEEEESSSBCCCC----SSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hheeEeCCCEEEEEEEeeccCCceeeecCcccceee----eeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            5678999999999999998    9999864322111    1111122345799999999999999999999888765444


Q ss_pred             EEEE
Q psy3045          99 VLTV  102 (267)
Q Consensus        99 ~l~V  102 (267)
                      .+.+
T Consensus        81 ~l~~   84 (92)
T d1olza1          81 VVAK   84 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-11  Score=75.71  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=56.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+|.|..... +.+.+.+|+++.|.|.+.+    +.|++++....  ... ....+..  ....|.|.++...|+|.|+|
T Consensus         4 ~~~~f~~~l~-~~~~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~--~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   79 (94)
T d1pd6a_           4 KSTAFQKKLE-PAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQ--MSG-SKYIFESIGAKRTLTISQCSLADDAAYQC   79 (94)
T ss_dssp             TTSSCSEECC-SEEEEETTSCEEEEEECSSSSSCCEEEESSSEEC--CCS-SSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred             CCCcEEEeCC-CCEEECcCCeEEEEEEECCCCceEEEEEcCccce--eee-eeEeeeccCCeEEeecCCCCceecEEEEE
Confidence            4577776652 4578999999999999976    99999643221  110 0111222  23579999999999999999


Q ss_pred             EEEcCCCccEEEEEEEEE
Q psy3045          86 VVNNSVGGESVETVLTVT  103 (267)
Q Consensus        86 ~~~~~~~~~~~~~~l~V~  103 (267)
                      .|.|.    .....|.|.
T Consensus        80 ~a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          80 VVGGE----KCSTELFVK   93 (94)
T ss_dssp             EETTE----EECCEEEEE
T ss_pred             EEeeE----EEEEEEEEE
Confidence            99553    344455553

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-11  Score=76.52  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=59.7

Q ss_pred             CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc----------cCCceEEEEeeEEEEeecccC
Q psy3045          14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV----------PLNDRVKQVSGTLIIKEAKVE   78 (267)
Q Consensus        14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~   78 (267)
                      |.|.... ...+.+..|+++.|.|.+.+     +.|++++.........          ..........+.|.|.+++.+
T Consensus         2 P~i~~p~-~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPA-NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECC-SEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEEC-CCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            5555433 25678899999999999999     9999863221100000          001111123457999999999


Q ss_pred             CCe-eEEEEEEcCCCccEEEEEEE
Q psy3045          79 DSG-KYLCVVNNSVGGESVETVLT  101 (267)
Q Consensus        79 d~G-~Y~C~~~~~~~~~~~~~~l~  101 (267)
                      |.| .|+|.|.|..|..+..+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999887777664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-11  Score=77.54  Aligned_cols=91  Identities=10%  Similarity=0.099  Sum_probs=59.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--CCceEEEEeeEEEEeecccCCCeeEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--LNDRVKQVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      .||.|.....     ...+....|.|.+.|     +.|++++..........  .........+.|.|.+++..|+|.|+
T Consensus         4 ~PP~i~~~~~-----~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           4 YPPRVVSLEE-----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCC-----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             cCCeeEEeCC-----CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            4677765441     224455668888887     99999643211110000  00011123457999999999999999


Q ss_pred             EEEEcCCCccEEEEEEEEEeccc
Q psy3045          85 CVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        85 C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      |.|.|..|..+..+.|.|...|.
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeCCC
Confidence            99999999998888888876554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.4e-12  Score=79.16  Aligned_cols=81  Identities=10%  Similarity=0.085  Sum_probs=52.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      ....+.+|+.++|.|.+.+        +.|++++.....................|.+.....+|.|.|+|.|.|..+..
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            4567889999999999975        88999743322222112122212234467777777777889999999988765


Q ss_pred             EEEEEEEEE
Q psy3045          95 SVETVLTVT  103 (267)
Q Consensus        95 ~~~~~l~V~  103 (267)
                      ...+.+.+.
T Consensus        90 ~~~~~~~~s   98 (106)
T d1zxqa1          90 GGNIFHKHS   98 (106)
T ss_dssp             TCCEEEEEC
T ss_pred             CCeeEeccc
Confidence            444444443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.5e-11  Score=74.51  Aligned_cols=89  Identities=12%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-----EEeeEEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-----QVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G   81 (267)
                      .||.|....     ....++.+.|.|.+.|     +.|++++...  ........+..     ...+.|.|.+++..|+|
T Consensus         3 ~pP~it~~~-----~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (103)
T d1wwbx_           3 FAPTITFLE-----SPTSDHHWCIPFTVKGNPKPALQWFYNGAIL--NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG   75 (103)
T ss_dssp             CCCCCCCCC-----CCCCCCEEEEEEEEECSSCCEEEEEETTEEE--CCCSSEEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             cCCeeEEcC-----CCccceeEEEEEEEEEeCCCEEEEEECCEEe--eeeeeeeeeecccccccceEEEEECCCCHHhCc
Confidence            467776543     2346788899999988     9999963321  11111111111     12357999999999999


Q ss_pred             eEEEEEEcCCCccEEEEEEEEEeccc
Q psy3045          82 KYLCVVNNSVGGESVETVLTVTAPLA  107 (267)
Q Consensus        82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~  107 (267)
                      .|+|.|.|..|..+..+.|.|...|.
T Consensus        76 ~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          76 DYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             eEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            99999999999999988888876553

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.4e-12  Score=79.65  Aligned_cols=71  Identities=13%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEeEeCCC-C--CceEEEEECCccCCCC---------C--CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         145 TIDFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDH---------N--EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~---------~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+.+|+.++|.|.+.|. |  .+.+.|++++..+...         .  ...|.+.....+|.|.|+|.|.|..+.....
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~   92 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGN   92 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCC
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCe
Confidence            68889999999999874 3  4589999999877421         1  2346666666777889999999987655444


Q ss_pred             EEEEE
Q psy3045         211 GELKL  215 (267)
Q Consensus       211 ~~l~v  215 (267)
                      ..+.+
T Consensus        93 ~~~~~   97 (106)
T d1zxqa1          93 IFHKH   97 (106)
T ss_dssp             EEEEE
T ss_pred             eEecc
Confidence            44444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.2e-12  Score=83.74  Aligned_cols=91  Identities=20%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCC-
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVED-   79 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-   79 (267)
                      ..||.|.. +  ....+.+|+++.|.|.+.+      +.|++++..........+.....    ...+.|.|.++...| 
T Consensus         5 ~~Pp~i~~-~--~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           5 NGPPIISS-T--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             CSSCCEEE-E--CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             ecCCEEec-C--CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence            34677653 3  5678899999999999987      88998643222111111111111    112479999999999 


Q ss_pred             CeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045          80 SGKYLCVVNNSVGGESVETVLTVTA  104 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~~~~~~~l~V~~  104 (267)
                      +|.|+|.|.|..|.++..+.|.|..
T Consensus        82 ~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          82 QTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CeEEEEEEEECCCeEEEEEEEEEEC
Confidence            6999999999999998888887764

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.12  E-value=2.9e-11  Score=77.44  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=57.1

Q ss_pred             EEecCCCEEEEeEe-CCCCCceEEEEECCccCCC-------------CCCCeEEeccCCCCCCe---EEEEEEEcCCCCc
Q psy3045         145 TIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKG---MYQCVIRNEQESA  207 (267)
Q Consensus       145 ~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~-------------~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~  207 (267)
                      .+.+|+++.|.|.+ .|.|.|.+.|++++..+..             .....|.|.+++.+|+|   .|.|.|.|..+..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            56689999999996 7899999999998766532             13568999999888766   7999999999888


Q ss_pred             eEEEEEEE
Q psy3045         208 QASGELKL  215 (267)
Q Consensus       208 ~~~~~l~v  215 (267)
                      .....+.+
T Consensus        93 ~~~~~~~~  100 (111)
T d1biha2          93 EVVLVEYE  100 (111)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEE
Confidence            76654444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.12  E-value=1.2e-11  Score=75.97  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=51.9

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET   98 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   98 (267)
                      .+..+.+|+++.|.|.+..    +.|++++....  ....+.........+|.|.+++.+|+|.|+|.+.|..+    +.
T Consensus         9 ~d~~v~~G~~~~~~c~vs~p~~~v~W~k~g~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa   82 (89)
T d1tiua_           9 YGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLT--ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AA   82 (89)
T ss_dssp             CCEEEETTSCCCEEEBCSSSSCCCBCCSSSCCCC--SSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CE
T ss_pred             cCEEEeCCCcEEEEEEECCCCcEEEEEEeeeecc--cceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EE
Confidence            7899999999999999866    99999744321  11111111111335899999999999999999866433    34


Q ss_pred             EEEEE
Q psy3045          99 VLTVT  103 (267)
Q Consensus        99 ~l~V~  103 (267)
                      .|.|.
T Consensus        83 ~l~V~   87 (89)
T d1tiua_          83 NLKVK   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.06  E-value=2.4e-10  Score=73.07  Aligned_cols=80  Identities=25%  Similarity=0.367  Sum_probs=56.0

Q ss_pred             eeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccc-cCCceEE-EEeeEEEEeecccCCCe---eEEEEEEcCC
Q psy3045          23 IRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAV-PLNDRVK-QVSGTLIIKEAKVEDSG---KYLCVVNNSV   91 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~G---~Y~C~~~~~~   91 (267)
                      ++.++.+|+++.|.|.+ .+     +.|++++......... ....++. ..+++|.|.+++..|+|   .|+|.|.|..
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            45678899999999986 55     9999975443221111 1122222 24568999999999877   7999999999


Q ss_pred             CccEEEEEEEE
Q psy3045          92 GGESVETVLTV  102 (267)
Q Consensus        92 ~~~~~~~~l~V  102 (267)
                      |.....+.+.+
T Consensus        90 g~~~~~~~~~~  100 (111)
T d1biha2          90 VDEEVVLVEYE  100 (111)
T ss_dssp             CSSCEEEEEEE
T ss_pred             CCceEEEEEEE
Confidence            98766554443

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.2e-10  Score=69.89  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             eEEecCCCeEEEEEE------ecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          24 RFKKPGGESFALLCE------AQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~------~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      ...+..|.+..|.|.      +.+     +.|++++....     ....+....++.|.|.++..+|+|.|+|.|.|..+
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLL-----LDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECC-----CCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCcccc-----CCCcEEEecCCEEEEcccccccCcEEEEEEEECcC
Confidence            457899999999993      333     99999633211     12334555667899999999999999999998877


Q ss_pred             ccE
Q psy3045          93 GES   95 (267)
Q Consensus        93 ~~~   95 (267)
                      ...
T Consensus        83 g~~   85 (103)
T d1iray2          83 GKQ   85 (103)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            643

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-10  Score=72.65  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             eeEEecCCCeEEEEE---Eecc-----eeeeecccCcceeccc-----cCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLC---EAQE-----NMWFKFIEGSSRKVAV-----PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C---~~~~-----~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      .++.+.+|....+.|   .+.|     +.|++++.........     ............|.|.++...|+|.|+|.|.|
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            455666666666555   7777     9999964321110000     00111112345799999999999999999999


Q ss_pred             CCCccEEEEEEEEEeccc
Q psy3045          90 SVGGESVETVLTVTAPLA  107 (267)
Q Consensus        90 ~~~~~~~~~~l~V~~~~~  107 (267)
                      ..|.....+.|.|..+|.
T Consensus        85 ~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          85 PFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             TTEEEEEEEEECCCSCTT
T ss_pred             CCCEEEEEEEEEEEcCCC
Confidence            999998888888877663

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=6.4e-11  Score=75.19  Aligned_cols=77  Identities=14%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             EecCCCeEEEEEEecc-----eeeeecccCcce-------------eccccCCceEEE-EeeEEEEeecccCCCeeEEEE
Q psy3045          26 KKPGGESFALLCEAQE-----NMWFKFIEGSSR-------------KVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~-------------~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      .+.+|++|.|.|....     +.|+|+......             .....+..|... .+++|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            4679999999998555     999985322111             111123445554 467999999999999999999


Q ss_pred             EEcCCCc-cEEEEEEEE
Q psy3045          87 VNNSVGG-ESVETVLTV  102 (267)
Q Consensus        87 ~~~~~~~-~~~~~~l~V  102 (267)
                      +.+..+. ....+.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            9876643 444455544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=2.7e-10  Score=71.07  Aligned_cols=81  Identities=17%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce----eccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR----KVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~----~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ..+....|++|+|.|....       +.|+++......    ........+.. ..+++|+|.+++.+|+|.|+|.+.+.
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeC
Confidence            4678889999999996322       999985321100    01111222322 34578999999999999999999998


Q ss_pred             CCcc--EEEEEEEEE
Q psy3045          91 VGGE--SVETVLTVT  103 (267)
Q Consensus        91 ~~~~--~~~~~l~V~  103 (267)
                      .|..  ...+.|.|.
T Consensus        83 ~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          83 NGTRILNKALDLRIL   97 (98)
T ss_dssp             TCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
Confidence            8875  556666664

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.5e-10  Score=70.68  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC-------------------CCCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~-------------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ....|++|+|.|... .|.+.+.|++++..+.                   ...+..|.|.+++.+|+|.|.|.+.+..+
T Consensus         6 ~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1           6 YGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             EEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             EEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc
Confidence            677899999999864 5788999999886542                   11356899999999999999999988765


Q ss_pred             Cce
Q psy3045         206 SAQ  208 (267)
Q Consensus       206 ~~~  208 (267)
                      ...
T Consensus        85 t~~   87 (93)
T d1ccza1          85 TMK   87 (93)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1e-11  Score=80.54  Aligned_cols=74  Identities=20%  Similarity=0.321  Sum_probs=60.1

Q ss_pred             eEEEecCCCEEEEeEeCCC-CCceEEEEECCccCCCCC---------------CCeEEeccCCCCC-CeEEEEEEEcCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQE  205 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d-~g~y~C~~~~~~~  205 (267)
                      ...+.+|+.+.|.|.+.+. |.+.+.|++++..+....               .+.|.|.++..+| +|.|+|.|.|..|
T Consensus        15 ~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G   94 (115)
T d2crya1          15 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG   94 (115)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCC
Confidence            3467789999999999986 466899999998775321               1468999999998 6999999999999


Q ss_pred             CceEEEEEEEe
Q psy3045         206 SAQASGELKLG  216 (267)
Q Consensus       206 ~~~~~~~l~v~  216 (267)
                      .....+.|.|.
T Consensus        95 ~~~~~~~L~V~  105 (115)
T d2crya1          95 SDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEEECCCCS
T ss_pred             eEEEEEEEEEE
Confidence            88877777665

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-10  Score=71.68  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcce------eccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSR------KVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      ..+....|++|+|.|....    +.|+++++....      ........+...  .+++|+|.+++.+|+|.|+|.+.+.
T Consensus         3 ~~v~~~~G~sVtl~c~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             cEEEEEECCCEEEEecCCCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            5788999999999998776    999996332110      111122233332  3468999999999999999999776


Q ss_pred             CCccEEEEEEEE
Q psy3045          91 VGGESVETVLTV  102 (267)
Q Consensus        91 ~~~~~~~~~l~V  102 (267)
                      .+..  ...|.|
T Consensus        83 ~~t~--~~~l~V   92 (93)
T d1ccza1          83 TDTM--KFFLYV   92 (93)
T ss_dssp             CSCE--EEEEEE
T ss_pred             CcEE--EEEEEE
Confidence            5533  344444

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.1e-10  Score=71.62  Aligned_cols=83  Identities=19%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcce--------eccccCCceEEEE------eeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSR--------KVAVPLNDRVKQV------SGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~--------~~~~~~~~~~~~~------~~~l~i~~~~~~d~   80 (267)
                      ..+.+.+|++|+|.|....        +.|++...+...        ........+....      ..+|.|.+++.+|+
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds   86 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS   86 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC
Confidence            6889999999999999764        679885322211        0111122333221      24899999999999


Q ss_pred             eeEEEEEEcCCCccEEEEEEEEEec
Q psy3045          81 GKYLCVVNNSVGGESVETVLTVTAP  105 (267)
Q Consensus        81 G~Y~C~~~~~~~~~~~~~~l~V~~~  105 (267)
                      |.|.|.+..........+.|.|.+.
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          87 GRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEEEEcCCCCceEeEEEEEECC
Confidence            9999998754444556677777653

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-09  Score=71.64  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCccee---------------ccccCCceEEE-------EeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRK---------------VAVPLNDRVKQ-------VSGTLI   71 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~---------------~~~~~~~~~~~-------~~~~l~   71 (267)
                      ..+.+.+|++++|.|.+..         +.|++...+....               ....+..|...       ...+|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            5688899999999999764         7898753221110               01122334332       134799


Q ss_pred             EeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045          72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVT  103 (267)
Q Consensus        72 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  103 (267)
                      |.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999887777777777764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=4.1e-09  Score=69.00  Aligned_cols=73  Identities=23%  Similarity=0.415  Sum_probs=53.3

Q ss_pred             EEEecCCCEEEEeEeCCC---CCceEEEEECCccCC---------------C--------------CCCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGN---PVKTISWMKDGKPVP---------------D--------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~~~~---------------~--------------~~~~~l~i~~~~~~  191 (267)
                      ..+..|++++|.|.....   ....+.|++.+....               .              ..+.+|.|.+++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            477789999999986532   345789998653210               0              01357999999999


Q ss_pred             CCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         192 DKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       192 d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      |+|.|.|.+.+..+.......|.|.
T Consensus        92 D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCeEEEEEEEECCCEEEEEEEEEEe
Confidence            9999999999987776667777775

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.3e-09  Score=66.87  Aligned_cols=87  Identities=17%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      .+|.+...|  . ..|..|++|+|.|....    +.|++++......... ...........+.|.+++..|+|.|.|..
T Consensus         6 pkPsLsa~P--~-~~V~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~-~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           6 PMPFISAKS--S-PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCCEEESS--C-SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecC--C-CceeCCCeEEEEEcCCCCCcEEEEEECCCcCceeccc-cccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            358888776  3 46889999999998777    8888864322211111 01111123357899999999999999999


Q ss_pred             EcCCCcc--EEEEEEEE
Q psy3045          88 NNSVGGE--SVETVLTV  102 (267)
Q Consensus        88 ~~~~~~~--~~~~~l~V  102 (267)
                      .++....  +..+.|.|
T Consensus        82 ~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          82 RIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             EETTTEEEECCCEEEEE
T ss_pred             ECCCcccCCCCCEEEEe
Confidence            8766532  34444444

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=6.1e-09  Score=67.43  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCccee--------------ccccCCceEEE------EeeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRK--------------VAVPLNDRVKQ------VSGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~--------------~~~~~~~~~~~------~~~~l~i~   73 (267)
                      ..+.+..|++|+|.|.+..         +.|++...+....              ....+..|+..      .+.+|.|.
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH   86 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence            6789999999999998653         8898753322110              11123345443      23479999


Q ss_pred             ecccCCCeeEEEEEEcCCCc--cEEEEEEEEE
Q psy3045          74 EAKVEDSGKYLCVVNNSVGG--ESVETVLTVT  103 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~  103 (267)
                      +++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        87 ~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             SCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999875443  3445566654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.6e-09  Score=65.28  Aligned_cols=85  Identities=15%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +|.|...|   ...|..|++|+|.|....    +.|++++............   ......+.|.+++..|+|.|+|...
T Consensus         4 KPsLsa~P---~~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~---~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (95)
T d1olla1           4 KPFIWAEP---HFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPE---RINKVKFYIPDMNSRMAGQYSCIYR   77 (95)
T ss_dssp             CCEEEEES---CSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSSCT---TCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeC---CCcccCCCcEEEEEecCCCccEEEEEECCCCcceeEEccCC---CccEEEEEEeeeecCCCceEEEEeC
Confidence            57777776   345789999999999877    7777753211111110000   1123479999999999999999987


Q ss_pred             cCCCc--cEEEEEEEEE
Q psy3045          89 NSVGG--ESVETVLTVT  103 (267)
Q Consensus        89 ~~~~~--~~~~~~l~V~  103 (267)
                      ++...  .+..+.|.|.
T Consensus        78 ~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          78 VGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             ETTEECCCCCCEEEEEE
T ss_pred             CCCCccCCCCCEEEEEe
Confidence            76543  2445556554

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=5.1e-09  Score=65.10  Aligned_cols=71  Identities=11%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             EEecCCCEEEEeEe-CCC-CCceEEEEECCccCCC----------------CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKY-EGN-PVKTISWMKDGKPVPD----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~-~~~-p~~~~~W~~~~~~~~~----------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ....|++|+|.|.. ... ....|.|++++..+..                ..+.+|.|.+++.+|+|.|+|.+.+..|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            56679999999963 222 3458999998765521                13478999999999999999999998887


Q ss_pred             ceE--EEEEEE
Q psy3045         207 AQA--SGELKL  215 (267)
Q Consensus       207 ~~~--~~~l~v  215 (267)
                      ...  ++.|.|
T Consensus        86 ~~~~~~~~L~V   96 (98)
T d1hnga1          86 RILNKALDLRI   96 (98)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            643  444544

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.85  E-value=7.5e-09  Score=66.08  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=50.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCceEEEE------eeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQV------SGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......+....++...      ...|+|.+++.+|+|.|.|.+..
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            6889999999999998864       8899865544433334444444322      24799999999999999999864

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=7.9e-09  Score=66.94  Aligned_cols=75  Identities=19%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCccee---c---------------cccCCceEEE----
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK---V---------------AVPLNDRVKQ----   65 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~---~---------------~~~~~~~~~~----   65 (267)
                      +|.+...|  +.+.+.+|++|+|.|.+..     +.|++...+....   .               ......++..    
T Consensus         1 a~~~~~~P--~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~   78 (122)
T d1nezg_           1 APELRIFP--KKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT   78 (122)
T ss_dssp             CCEEEEES--SCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred             CCceEEcC--CEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence            57888888  7899999999999999866     9999853332110   0               0011122221    


Q ss_pred             -EeeEEEEeecccCCCeeEEEEEEc
Q psy3045          66 -VSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        66 -~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                       ...+|+|.+++.+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence             124799999999999999999864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-09  Score=65.28  Aligned_cols=67  Identities=31%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcce--------eccccCCceEEE-------EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--------KVAVPLNDRVKQ-------VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--------~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~   82 (267)
                      ..+...+|++|+|.|....     +.|++...+...        .....+..|+..       .+.+|.|.+++.+|+|.
T Consensus         2 ~~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            3567889999999999887     899985332111        111122333321       23479999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |+|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999954

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3.5e-08  Score=63.00  Aligned_cols=68  Identities=16%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecc---------ccCCceEEEE------eeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVA---------VPLNDRVKQV------SGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~---------~~~~~~~~~~------~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|.+..      +.|++...+......         .....|+...      ...|.|.++..+|+|
T Consensus         7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   86 (114)
T d3bp5a1           7 AWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSG   86 (114)
T ss_dssp             SEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCe
Confidence            6889999999999998865      789986443322111         1223343321      246999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (114)
T d3bp5a1          87 IYLCGAISL   95 (114)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEeC
Confidence            999998754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.3e-08  Score=63.31  Aligned_cols=70  Identities=17%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec--------cccCCceEEE------EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV--------AVPLNDRVKQ------VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~--------~~~~~~~~~~------~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....       +.|++...+.....        ......|+..      ...+|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            5788999999999998765       67998533221110        1112233322      1247999999999999


Q ss_pred             eEEEEEEcCCC
Q psy3045          82 KYLCVVNNSVG   92 (267)
Q Consensus        82 ~Y~C~~~~~~~   92 (267)
                      .|.|.+..+..
T Consensus        84 ~Y~C~v~~~~~   94 (108)
T d1hkfa_          84 HYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99999985544

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.75  E-value=2.4e-08  Score=63.41  Aligned_cols=68  Identities=22%  Similarity=0.410  Sum_probs=46.6

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecccc--------CCceEE----EEeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVP--------LNDRVK----QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~--------~~~~~~----~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      +++.+.+|++|+|.|....      +.|++...+......+.        ...++.    .....|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            5789999999999998764      78998644332111111        011111    12357999999999999999


Q ss_pred             EEEEcC
Q psy3045          85 CVVNNS   90 (267)
Q Consensus        85 C~~~~~   90 (267)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            998643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.74  E-value=2.9e-08  Score=63.03  Aligned_cols=68  Identities=25%  Similarity=0.466  Sum_probs=49.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCceEEE------EeeEEEEeecccCCCeeEEEEEEc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQ------VSGTLIIKEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~   89 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......+....++..      ...+|.|.++..+|+|.|.|.+..
T Consensus         7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            6788999999999998754       889997544433333333333332      124799999999999999999865


Q ss_pred             C
Q psy3045          90 S   90 (267)
Q Consensus        90 ~   90 (267)
                      .
T Consensus        87 ~   87 (112)
T d1sq2n_          87 A   87 (112)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.73  E-value=7.8e-08  Score=61.57  Aligned_cols=70  Identities=20%  Similarity=0.326  Sum_probs=48.1

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccc-----------cCCceEEEE------eeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV-----------PLNDRVKQV------SGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~-----------~~~~~~~~~------~~~l~i~~~~~~d   79 (267)
                      ..+.+.+|++|+|.|....      +.|++...+......+           ....|+...      ..+|+|.+++.+|
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   87 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTED   87 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccc
Confidence            6889999999999998755      8899853322211111           122344321      2479999999999


Q ss_pred             CeeEEEEEEcCCC
Q psy3045          80 SGKYLCVVNNSVG   92 (267)
Q Consensus        80 ~G~Y~C~~~~~~~   92 (267)
                      +|.|.|.+....+
T Consensus        88 sg~YyCa~~~~~~  100 (116)
T d1tvda_          88 SATYYCAFTLPPP  100 (116)
T ss_dssp             CEEEEEEEECTTT
T ss_pred             cccceeeEecCCC
Confidence            9999999876543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.72  E-value=1.9e-08  Score=64.36  Aligned_cols=69  Identities=23%  Similarity=0.373  Sum_probs=48.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEE------EEeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVK------QVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~------~~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....++.      ....+|.|.+++.+|+|.|
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y   87 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASY   87 (114)
T ss_dssp             SEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEE
T ss_pred             CEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccc
Confidence            6889999999999999876     9999864332211100        0111121      1235799999999999999


Q ss_pred             EEEEEcCC
Q psy3045          84 LCVVNNSV   91 (267)
Q Consensus        84 ~C~~~~~~   91 (267)
                      .|.+....
T Consensus        88 ~Ca~~~~~   95 (114)
T d2cdea1          88 ICVVSDRG   95 (114)
T ss_dssp             EEEEECSC
T ss_pred             ceeeecCC
Confidence            99998643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.71  E-value=1.4e-08  Score=63.99  Aligned_cols=67  Identities=16%  Similarity=0.380  Sum_probs=47.2

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+........        ...++..    .+..|.|.++..+|+|.|.|
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyC   87 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYC   87 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEE
Confidence            6789999999999998765     88998643332211111        1223322    23579999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+.+
T Consensus        88 a~~~   91 (106)
T d1a0ql1          88 LQYY   91 (106)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            8754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.70  E-value=1.2e-08  Score=64.29  Aligned_cols=68  Identities=19%  Similarity=0.398  Sum_probs=47.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+.......        ....|+..    ...+|.|.++..+|+|.|.|
T Consensus         9 ~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYC   88 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeE
Confidence            6788999999999998865     8999863333221111        12233332    23579999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .+...
T Consensus        89 a~~~~   93 (106)
T d1i8ka_          89 LQSFN   93 (106)
T ss_dssp             EECSS
T ss_pred             ecCcc
Confidence            87543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.69  E-value=4.7e-08  Score=62.14  Aligned_cols=68  Identities=22%  Similarity=0.478  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y   83 (267)
                      +++.+.+|++|+|.|.+.+       +.|++...+........        ...++..    ....|.|.++..+|++.|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            4689999999999998765       88998644332221111        1222222    235899999999999999


Q ss_pred             EEEEEcC
Q psy3045          84 LCVVNNS   90 (267)
Q Consensus        84 ~C~~~~~   90 (267)
                      .|.....
T Consensus        88 yCA~~~~   94 (114)
T d2rhea_          88 YCAAWND   94 (114)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9998643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.68  E-value=2.4e-08  Score=62.73  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .++.+.+|++|+|.|....     +.|++...+......+.        ...++..    .+..|.|.+++.+|+|.|.|
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   88 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEE
Confidence            6888999999999999776     88998644433211111        1122221    23589999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1c5cl1          89 LQYA   92 (107)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            8754

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.8e-08  Score=63.08  Aligned_cols=74  Identities=20%  Similarity=0.378  Sum_probs=51.7

Q ss_pred             eEEEecCCCEEEEeEeCCCC----CceEEEEECCccCC--------------------C-------------CCCCeEEe
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVP--------------------D-------------HNEPVFRI  185 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~~~--------------------~-------------~~~~~l~i  185 (267)
                      ...+.+|+++.|.|.....+    ...+.|++......                    .             .....|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            34778899999999875432    33688986321110                    0             01257999


Q ss_pred             ccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         186 DSVRKEDKGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       186 ~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      .+++.+|+|.|.|.+.+..+.......|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999887766666666553

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.68  E-value=2.5e-08  Score=62.45  Aligned_cols=68  Identities=19%  Similarity=0.417  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +.+++.+|++|+|.|....     +.|++...+.......        ....++..    ....|.|.++..+|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            4788999999999999776     8899964443222111        11222221    23589999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .+...
T Consensus        86 A~~~~   90 (103)
T d8faba1          86 QAWDN   90 (103)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            87643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.67  E-value=3.3e-08  Score=62.25  Aligned_cols=68  Identities=24%  Similarity=0.410  Sum_probs=48.1

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+++.+|++|+|.|....     +.|++...+.......        ....++..    .+..|.|.++..+|+|.|.|
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEE
Confidence            6889999999999998876     9999964433221111        11223332    23589999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .+...
T Consensus        89 a~~~~   93 (107)
T d1ospl1          89 QQYWS   93 (107)
T ss_dssp             EECSS
T ss_pred             eeccC
Confidence            87643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.8e-08  Score=62.37  Aligned_cols=73  Identities=18%  Similarity=0.257  Sum_probs=49.4

Q ss_pred             ccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceec--------------cccCCceEEE----EeeEEE
Q psy3045          16 FSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKV--------------AVPLNDRVKQ----VSGTLI   71 (267)
Q Consensus        16 ~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~--------------~~~~~~~~~~----~~~~l~   71 (267)
                      +...|  .+.++.+|++|+|.|.+..      +.|++...+.....              ......|+..    ....|.
T Consensus         3 ~~~sP--~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~   80 (114)
T d1akjd_           3 FRVSP--LDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLT   80 (114)
T ss_dssp             EEEEC--CSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEE
T ss_pred             eeECC--CcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcE
Confidence            34444  6788999999999998765      88999644322110              0011223322    134799


Q ss_pred             EeecccCCCeeEEEEEEcC
Q psy3045          72 IKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        72 i~~~~~~d~G~Y~C~~~~~   90 (267)
                      |.+++.+|+|.|.|.+...
T Consensus        81 I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          81 LSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             EccCCCCCCEEEeEeEcCC
Confidence            9999999999999998743

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.66  E-value=2e-08  Score=64.36  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecccc---------CCceEEE------EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVP---------LNDRVKQ------VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~---------~~~~~~~------~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....      +.|++...+......+.         ...++..      ....|.|.+++.+|+|
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA   86 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence            6889999999999998765      78998643322211110         1112221      1247999999999999


Q ss_pred             eEEEEEEcCC
Q psy3045          82 KYLCVVNNSV   91 (267)
Q Consensus        82 ~Y~C~~~~~~   91 (267)
                      .|.|.+....
T Consensus        87 ~YyCa~~~~~   96 (115)
T d1fo0a_          87 VYFCAMRGDY   96 (115)
T ss_dssp             EEEEEEECCC
T ss_pred             cccceeecCC
Confidence            9999987543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.66  E-value=5.6e-08  Score=62.00  Aligned_cols=70  Identities=27%  Similarity=0.493  Sum_probs=48.7

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      .++.+.+|++|+|.|.+..     +.|++...+......+        ....+...      ....|.|.+++.+|+|.|
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Y   87 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATY   87 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEE
Confidence            6889999999999999877     8899854333221111        01112211      134899999999999999


Q ss_pred             EEEEEcCCC
Q psy3045          84 LCVVNNSVG   92 (267)
Q Consensus        84 ~C~~~~~~~   92 (267)
                      .|.+....+
T Consensus        88 yCa~~~~~~   96 (113)
T d2bnqd1          88 LCAVRPTSG   96 (113)
T ss_dssp             EEEEEESSS
T ss_pred             eEeEecCCC
Confidence            999975543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=3.8e-08  Score=62.05  Aligned_cols=67  Identities=25%  Similarity=0.443  Sum_probs=47.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+.......        ....++..    .+..|.|.+++.+|+|.|.|
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEE
Confidence            6889999999999999765     8999864443221111        11223322    23589999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1j1pl_          89 QQAN   92 (107)
T ss_dssp             EECS
T ss_pred             EcCC
Confidence            8754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.66  E-value=5.3e-08  Score=61.98  Aligned_cols=67  Identities=24%  Similarity=0.435  Sum_probs=46.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d   79 (267)
                      ..+.+.+|++|+|.|...+           +.|++...+........        ...++..    ....|.|.+++.+|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D   88 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED   88 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence            6889999999999997543           88999644332211111        1122222    23479999999999


Q ss_pred             CeeEEEEEEc
Q psy3045          80 SGKYLCVVNN   89 (267)
Q Consensus        80 ~G~Y~C~~~~   89 (267)
                      +|.|.|....
T Consensus        89 sa~YyCA~~~   98 (113)
T d1q9ra1          89 LAVYYCKQSY   98 (113)
T ss_dssp             CEEEEEEECS
T ss_pred             CeEEEecccC
Confidence            9999998753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.65  E-value=6.9e-08  Score=61.51  Aligned_cols=69  Identities=29%  Similarity=0.408  Sum_probs=47.7

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceE------E-------EEeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRV------K-------QVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~------~-------~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+......      .       .....|.|.++..+|+|.|.|
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            6889999999999999877    8999964333222111111100      0       123479999999999999999


Q ss_pred             EEEcCC
Q psy3045          86 VVNNSV   91 (267)
Q Consensus        86 ~~~~~~   91 (267)
                      .+....
T Consensus        89 a~~~~~   94 (113)
T d1h5ba_          89 AAEASS   94 (113)
T ss_dssp             EEECSS
T ss_pred             EecCCC
Confidence            987543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=64.81  Aligned_cols=68  Identities=22%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             eeEEecCCCeEEEEEEecc------------eeeeecccCcceec-----------cccCCceEEE------EeeEEEEe
Q psy3045          23 IRFKKPGGESFALLCEAQE------------NMWFKFIEGSSRKV-----------AVPLNDRVKQ------VSGTLIIK   73 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------------~~W~~~~~~~~~~~-----------~~~~~~~~~~------~~~~l~i~   73 (267)
                      .++++.+|++|.|.|.+..            +.|++...+.....           ......|+..      .+.+|+|.
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR   88 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence            6889999999999998742            67887522221100           1112234432      23589999


Q ss_pred             ecccCCCeeEEEEEEcC
Q psy3045          74 EAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        74 ~~~~~d~G~Y~C~~~~~   90 (267)
                      +++.+|+|.|.|.+...
T Consensus        89 ~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          89 DARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCChHHCEEEEEEEEeC
Confidence            99999999999999754

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.65  E-value=3.6e-08  Score=63.05  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecccc---------CCce--EEE----EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVP---------LNDR--VKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~---------~~~~--~~~----~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....      +.|++...+......+.         ...+  ...    ....|.|.++..+|+|
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   87 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSA   87 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCC
Confidence            6889999999999998654      78998533322211110         0011  111    1347999999999999


Q ss_pred             eEEEEEEcCC
Q psy3045          82 KYLCVVNNSV   91 (267)
Q Consensus        82 ~Y~C~~~~~~   91 (267)
                      .|.|.+....
T Consensus        88 ~YyCa~~~~~   97 (114)
T d2ak4d1          88 VYFCALSGFY   97 (114)
T ss_dssp             EEEEEEECSB
T ss_pred             CceEeCCCCC
Confidence            9999886544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.3e-08  Score=60.49  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC----------CCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS  210 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  210 (267)
                      .+..|++|+|.|... .+...+.|++++....          ......+.|.+++.+|+|.|+|...+.......+
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~S   91 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   91 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCC
Confidence            688899999999865 3456889998765311          1234679999999999999999998876543333

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=3.4e-08  Score=62.31  Aligned_cols=67  Identities=25%  Similarity=0.428  Sum_probs=46.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....++..    ....|.|.+++.+|+|.|.|
T Consensus         9 ~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyC   88 (107)
T d1kcvl1           9 KSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYC   88 (107)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEE
Confidence            6889999999999999776     9999853332211111        01222221    23579999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1kcvl1          89 GQSY   92 (107)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            8754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.63  E-value=4.3e-08  Score=61.93  Aligned_cols=67  Identities=24%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+.+.+|++|+|.|....      +.|++...+......+        ....++..    ....|.|.++..+|+|.|.
T Consensus         9 ~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (108)
T d2fx7l1           9 GTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYY   88 (108)
T ss_dssp             SEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEe
Confidence            6889999999999998754      8899864443221111        11223322    2347999999999999999


Q ss_pred             EEEEc
Q psy3045          85 CVVNN   89 (267)
Q Consensus        85 C~~~~   89 (267)
                      |.+..
T Consensus        89 Ca~~~   93 (108)
T d2fx7l1          89 CQQYG   93 (108)
T ss_dssp             EEECS
T ss_pred             eecCC
Confidence            98753

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.63  E-value=4.6e-08  Score=62.59  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=47.2

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|....     +.|+|...+......+        ....++..      ....|.|.+++.+|+|.|
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY   88 (115)
T ss_dssp             SEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence            6789999999999999876     9999864332221111        01112221      124699999999999999


Q ss_pred             EEEEEcC
Q psy3045          84 LCVVNNS   90 (267)
Q Consensus        84 ~C~~~~~   90 (267)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1lp9e1          89 YCALFLA   95 (115)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEcC
Confidence            9988654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.2e-08  Score=61.22  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc-----------cCCceEEEE------eeEEEEeecccC
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV-----------PLNDRVKQV------SGTLIIKEAKVE   78 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~-----------~~~~~~~~~------~~~l~i~~~~~~   78 (267)
                      ....+.+|++|+|.|.+.+       +.|++...+.......           ....|+...      ..+|+|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            4678899999999998764       7799863332211111           112233321      146999999999


Q ss_pred             CCeeEEEEEEcCC
Q psy3045          79 DSGKYLCVVNNSV   91 (267)
Q Consensus        79 d~G~Y~C~~~~~~   91 (267)
                      |+|.|.|.+....
T Consensus        87 Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          87 DSGLYQCVIYQPP   99 (113)
T ss_dssp             GCEEEEEEECCTT
T ss_pred             cCceEEEEEECCC
Confidence            9999999986543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=3.6e-08  Score=62.14  Aligned_cols=61  Identities=11%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------------------------CCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------------------------~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .+.+|++|.|.|.........+.|+|+......                         ..+.+|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            456899999999854444668999985532110                         1347899999999999999999


Q ss_pred             EEcCCC
Q psy3045         200 IRNEQE  205 (267)
Q Consensus       200 ~~~~~~  205 (267)
                      +.+..+
T Consensus        90 v~~~~~   95 (107)
T d1l6za1          90 MTDENY   95 (107)
T ss_dssp             EEETTE
T ss_pred             EEECCC
Confidence            987653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=6.7e-08  Score=60.77  Aligned_cols=67  Identities=22%  Similarity=0.429  Sum_probs=47.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +++.+.+|++|+|.|....     +.|++...+......+        ....++..    ....|.|.+++.+|+|.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            4688999999999999876     9999864433221111        11223332    23589999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      ....
T Consensus        88 a~~~   91 (106)
T d1lk3l1          88 QQSW   91 (106)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            7643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.60  E-value=4.6e-08  Score=61.49  Aligned_cols=67  Identities=19%  Similarity=0.391  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....++..    ....|.|.+++.+|+|.|.|
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC   87 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEee
Confidence            6889999999999999876     8899864333221111        11223322    23479999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        88 a~~~   91 (106)
T d1op3k1          88 QHYA   91 (106)
T ss_dssp             EEEC
T ss_pred             eeCC
Confidence            8764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.60  E-value=5.3e-08  Score=61.86  Aligned_cols=67  Identities=19%  Similarity=0.365  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+.        ...+...      ....|.|.++..+|+|.|
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY   86 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeE
Confidence            6788999999999999876     88998644332221110        0111111      134799999999999999


Q ss_pred             EEEEEc
Q psy3045          84 LCVVNN   89 (267)
Q Consensus        84 ~C~~~~   89 (267)
                      .|.+..
T Consensus        87 yCa~~~   92 (110)
T d1u3ha1          87 FCAASA   92 (110)
T ss_dssp             EECCEE
T ss_pred             eeeecC
Confidence            999864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-07  Score=59.83  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             eeEEecCCCeEEEEEEecc--------eee--eecccCcc--------e--eccccCCceEEE--EeeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMW--FKFIEGSS--------R--KVAVPLNDRVKQ--VSGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W--~~~~~~~~--------~--~~~~~~~~~~~~--~~~~l~i~~~~~~d~   80 (267)
                      ..+.+..|++|+|.|.+..        +.|  .++.....        .  .....+..+...  .+.+|.|.+++.+|+
T Consensus         2 ~~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           2 LKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC
T ss_pred             EEEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC
Confidence            3567889999999999864        333  33211100        0  011123333332  345899999999999


Q ss_pred             eeEEEEEEcCC
Q psy3045          81 GKYLCVVNNSV   91 (267)
Q Consensus        81 G~Y~C~~~~~~   91 (267)
                      |.|.|.+....
T Consensus        82 G~Y~C~V~~~~   92 (110)
T d1ncna_          82 GLYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEecC
Confidence            99999996443

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.60  E-value=6.6e-08  Score=61.37  Aligned_cols=68  Identities=22%  Similarity=0.419  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y   83 (267)
                      +++.+.+|++++|.|.+..       +.|++...+........        ...++..    ....|.|.+++.+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            4789999999999998764       88998633332221111        1222222    235899999999999999


Q ss_pred             EEEEEcC
Q psy3045          84 LCVVNNS   90 (267)
Q Consensus        84 ~C~~~~~   90 (267)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9998654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=7.1e-08  Score=60.67  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             eEEecCCCeEEEEEEecc---------eeeeecccCcc------eeccccCCceEEEE---eeEEEEeecccCCCeeEEE
Q psy3045          24 RFKKPGGESFALLCEAQE---------NMWFKFIEGSS------RKVAVPLNDRVKQV---SGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~------~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C   85 (267)
                      .+++..|++++|.|.+..         +.|.++.....      ......+..|+...   +.+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            568899999999998765         56666421110      00111122333332   3589999999999999999


Q ss_pred             EEEcCCCcc
Q psy3045          86 VVNNSVGGE   94 (267)
Q Consensus        86 ~~~~~~~~~   94 (267)
                      .+.+..+..
T Consensus        83 ~V~~~~~~~   91 (105)
T d1dr9a1          83 VVLKYEKDA   91 (105)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeCCCCC
Confidence            998655443

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=9.3e-08  Score=60.15  Aligned_cols=68  Identities=22%  Similarity=0.409  Sum_probs=46.7

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+.        ...+...    ....|.|.+++.+|+|.|.|
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   88 (108)
T d1jhll_           9 SYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYIC   88 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEE
T ss_pred             CeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEE
Confidence            6788999999999999876     88998643332211111        1111211    23479999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .....
T Consensus        89 A~~~~   93 (108)
T d1jhll_          89 QQHNE   93 (108)
T ss_dssp             EECSS
T ss_pred             eeCCC
Confidence            86543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.58  E-value=4.7e-08  Score=61.53  Aligned_cols=67  Identities=21%  Similarity=0.403  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....++..    ....|.|.++..+|+|.|.|
T Consensus         9 ~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyC   88 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEE
Confidence            7889999999999999886     8899864433221111        11222322    23479999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      ....
T Consensus        89 a~~~   92 (107)
T d1tjgl1          89 QQLH   92 (107)
T ss_dssp             EECS
T ss_pred             EECc
Confidence            7654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.58  E-value=1.2e-07  Score=60.58  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc---------CCceEEE------EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP---------LNDRVKQ------VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~---------~~~~~~~------~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+.         ...+...      ....|.|.++..+|+|.
T Consensus         8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1j8hd1           8 SHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAE   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCcc
Confidence            6889999999999999866     88998644332211110         0111111      12369999999999999


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (115)
T d1j8hd1          88 YFCAVSESP   96 (115)
T ss_dssp             EEEEEESST
T ss_pred             ceeeecCCC
Confidence            999997543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.58  E-value=1.1e-07  Score=60.33  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccc-----------cCCceEE-----EEeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAV-----------PLNDRVK-----QVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++++|.|....    +.|++...+......+           ....+..     .....|.|.++..+|+|.
T Consensus         9 ~~~~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1           9 RNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             SEEEECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            6888999999999998776    9999964432221111           0111111     123579999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=7.6e-08  Score=60.73  Aligned_cols=67  Identities=25%  Similarity=0.438  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+.        ...++..    ....|.|.+++.+|+|.|.|
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyC   88 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYC   88 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEE
Confidence            6889999999999999875     88999644332211111        1222322    23579999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        89 A~~~   92 (109)
T d1mqkl_          89 QHHY   92 (109)
T ss_dssp             EECS
T ss_pred             eeeC
Confidence            8764

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.57  E-value=1.3e-07  Score=60.05  Aligned_cols=69  Identities=22%  Similarity=0.418  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      .++.+.+|++|+|.|...+        +.|++...+........        ...++..    ....|.|.+++.+|+|.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence            6889999999999998764        78998643332211111        1122221    23579999999999999


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (112)
T d1lgva1          88 YYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeecCC
Confidence            999887543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.57  E-value=2.5e-07  Score=58.68  Aligned_cols=68  Identities=25%  Similarity=0.457  Sum_probs=47.2

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccc------------cCCceEEEE-----eeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAV------------PLNDRVKQV-----SGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~------------~~~~~~~~~-----~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+            ....++...     ...|.|.++..+|+|
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   86 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG   86 (111)
T ss_dssp             SEEEEETTCCEEEEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence            6788999999999998655    9999864433222111            112223221     247999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (111)
T d2esve1          87 VYFCASSQD   95 (111)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeeCC
Confidence            999987643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.57  E-value=9.2e-08  Score=60.62  Aligned_cols=68  Identities=24%  Similarity=0.404  Sum_probs=46.7

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....         +.|++...+......+.        ...++..    ....|.|.++..+|+|
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   88 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCc
Confidence            6788999999999997632         88999644432221111        1112221    2358999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+.+.
T Consensus        89 ~YyCa~~~~   97 (111)
T d1j05a_          89 TYYCQQTNE   97 (111)
T ss_dssp             EEEEEECSS
T ss_pred             cEEEeecCC
Confidence            999987643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=1.1e-07  Score=59.81  Aligned_cols=67  Identities=27%  Similarity=0.450  Sum_probs=46.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+.......        ....++..    ....|.|.++..+|++.|.|
T Consensus         9 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1           9 KFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEE
Confidence            6788999999999998765     8999863332221111        11233332    23579999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1mexl1          89 QQYN   92 (107)
T ss_dssp             EECS
T ss_pred             eECC
Confidence            8754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-07  Score=57.39  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=47.7

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +|.+...|   ...|..|++|+|.|....    +.|+|++........      .......+.|.+++..|+|.|+|...
T Consensus         4 kPsLsa~P---~~~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~~~~~------~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           4 TPTLSVHP---GPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRG------YGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCEEEEES---CSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEE------ECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCEEEEeC---CCcccCCCcEEEEECCCCCCCEEEEEECCCccceeec------CCCceeEEEecccChhcCceEEEEeE
Confidence            57777665   457889999999999877    888886432221111      01133579999999999999999754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.56  E-value=9.4e-08  Score=61.11  Aligned_cols=67  Identities=19%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC---------Cc--eEE----EEeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL---------ND--RVK----QVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~---------~~--~~~----~~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+..         ..  +..    .....|.|.++..+|+|.
T Consensus         8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence            5789999999999998765     889985333221111110         00  111    112479999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (115)
T d1i9ea_          88 YFCAVSG   94 (115)
T ss_dssp             EEEEEEE
T ss_pred             ecccccC
Confidence            9998764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=58.91  Aligned_cols=68  Identities=21%  Similarity=0.391  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +++.+.+|++|+|.|....     +.|++...+......+.        ...++..    ....|.|.+++.+|+|.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            4688999999999999766     99998644332221111        1222222    23479999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            98654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.56  E-value=6.8e-08  Score=60.52  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=46.1

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLCV   86 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~   86 (267)
                      ..+.+.+|++|+|.|....    +.|++...+........        ...++..    ....|.|.++..+|+|.|.|.
T Consensus         8 ~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             SEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEE
Confidence            6789999999999999766    88998643332211111        1122221    235799999999999999997


Q ss_pred             EE
Q psy3045          87 VN   88 (267)
Q Consensus        87 ~~   88 (267)
                      ..
T Consensus        88 ~~   89 (104)
T d1yqvl1          88 QW   89 (104)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=5.7e-08  Score=61.14  Aligned_cols=68  Identities=25%  Similarity=0.429  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....++..    .+..|.|.++..+|+|.|.|
T Consensus         9 ~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEe
Confidence            6789999999999998766     8899863332221111        11223322    23589999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .....
T Consensus        89 a~~~~   93 (107)
T d1d5il1          89 LQYDE   93 (107)
T ss_dssp             EECSS
T ss_pred             eeccC
Confidence            87543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.55  E-value=6.3e-08  Score=61.36  Aligned_cols=68  Identities=19%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             eeEEecCCCeEEEEEEecc---------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++|+|.|....         +.|++...+......+.        ...|+..    ....|+|.+++.+|++
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA   88 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAA   88 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCc
Confidence            6789999999999997643         88999644332221111        1223332    2357999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+...
T Consensus        89 ~YyCa~~~~   97 (111)
T d2gsia1          89 TYYCSHIRE   97 (111)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEECCC
Confidence            999987643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-07  Score=58.95  Aligned_cols=58  Identities=17%  Similarity=0.334  Sum_probs=44.6

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      ...+|++++|.|.........+.|++......                          ...+.+|.|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            56789999999997766677899998543210                          0013579999999999999999


Q ss_pred             EEEc
Q psy3045         199 VIRN  202 (267)
Q Consensus       199 ~~~~  202 (267)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            9965

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.55  E-value=1.6e-07  Score=59.58  Aligned_cols=66  Identities=27%  Similarity=0.462  Sum_probs=45.6

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      ..+++.+|++|+|.|...+          +.|++...+......+.        ...++..    ....|.|.++..+|+
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds   88 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV   88 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC
Confidence            6889999999999998643          78998644433222111        1223322    234799999999999


Q ss_pred             eeEEEEEE
Q psy3045          81 GKYLCVVN   88 (267)
Q Consensus        81 G~Y~C~~~   88 (267)
                      +.|.|...
T Consensus        89 AvYyCa~~   96 (112)
T d1mjul1          89 GVYYCLQH   96 (112)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEeC
Confidence            99999654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.55  E-value=5.9e-08  Score=61.38  Aligned_cols=67  Identities=19%  Similarity=0.396  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|...+     +.|++...+......+        ....++..    .+..|.|.+++.+|+|.|.|
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyC   90 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYC   90 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEE
Confidence            6789999999999999877     8899864333221111        11223332    23479999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      .+..
T Consensus        91 A~~~   94 (109)
T d1bwwa_          91 QQYQ   94 (109)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            8764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=3.6e-08  Score=62.08  Aligned_cols=67  Identities=18%  Similarity=0.359  Sum_probs=46.2

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCce----EEEEeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDR----VKQVSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....+    .......|.|.+++.+|+|.|.|
T Consensus         9 ~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d3cx5k1           9 VSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFC   88 (107)
T ss_dssp             TTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEe
Confidence            5678999999999998766     8899864433221111        11111    12234589999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      ....
T Consensus        89 a~~~   92 (107)
T d3cx5k1          89 QHHI   92 (107)
T ss_dssp             EECS
T ss_pred             eeCC
Confidence            8653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.2e-07  Score=57.98  Aligned_cols=77  Identities=9%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceecccc--CCceEEEEeeEEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVP--LNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ..|.|....     .+.+|+.++|.|.+.+        +.|++++..........  ...........|.+.....++..
T Consensus         3 ~~P~I~~~~-----~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~   77 (109)
T d1vcaa1           3 KDPEIHLSG-----PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK   77 (109)
T ss_dssp             SCCEEEESS-----CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTC
T ss_pred             CCCEEecCC-----CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCc
Confidence            457776544     4789999999999988        77998633221111111  11222233456666544444445


Q ss_pred             eEEEEEEcCCCc
Q psy3045          82 KYLCVVNNSVGG   93 (267)
Q Consensus        82 ~Y~C~~~~~~~~   93 (267)
                      .|+|.|.+..+.
T Consensus        78 ~ltC~a~~~~~~   89 (109)
T d1vcaa1          78 VLVCRAKLHIDE   89 (109)
T ss_dssp             EEEEEEEECSCC
T ss_pred             EEEEEEEcCcCC
Confidence            899999987644

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=4.2e-07  Score=57.13  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc-----------cCCceEEEEe------eEEEEeecccC
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV-----------PLNDRVKQVS------GTLIIKEAKVE   78 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~-----------~~~~~~~~~~------~~l~i~~~~~~   78 (267)
                      ....+.+|++|+|.|...+       ..|++...+..-...+           ....|+....      ..|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            5778999999999999876       7799853332110000           0122333221      36999999999


Q ss_pred             CCeeEEEEEEcCCC
Q psy3045          79 DSGKYLCVVNNSVG   92 (267)
Q Consensus        79 d~G~Y~C~~~~~~~   92 (267)
                      |+|.|.|...+...
T Consensus        83 Dsa~YyCa~~~~~~   96 (110)
T d1u9ka_          83 DSGLYRCVIYHPPN   96 (110)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             CCEEEEEEEeCCCC
Confidence            99999999875543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=3e-07  Score=58.37  Aligned_cols=68  Identities=25%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecc------------ccCCceEEE-----EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA------------VPLNDRVKQ-----VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~------------~~~~~~~~~-----~~~~l~i~~~~~~d~G   81 (267)
                      ....+.+|++++|.|....    +.|++...+......            .....++..     ....|+|.+++.+|+|
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA   86 (112)
T ss_dssp             SEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence            5778999999999998665    999986333221111            112223322     1247999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (112)
T d1kgce1          87 VYLCASSLG   95 (112)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEeeeCC
Confidence            999998643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.53  E-value=2.7e-07  Score=56.99  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +|.+...|   ...|..|++|+|.|....    +.|+|++........   ..........+.|..+...|+|.|+|...
T Consensus         6 kPsLsa~P---~~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2           6 KPSLSAQP---GPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLP---AGPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             CCEEEEES---CSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEE---CEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCEEEEeC---CCcccCCCeEEEEECCCCCccEEEEEECCCccccEEE---ccccCCccEEEEEeccccccCEEEEEEee
Confidence            57777776   458899999999999777    778885332211110   11111112356788888899999999876


Q ss_pred             cC
Q psy3045          89 NS   90 (267)
Q Consensus        89 ~~   90 (267)
                      ..
T Consensus        80 ~~   81 (99)
T d1nkra2          80 FH   81 (99)
T ss_dssp             ET
T ss_pred             cC
Confidence            44

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.3e-07  Score=59.57  Aligned_cols=67  Identities=19%  Similarity=0.322  Sum_probs=47.0

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~   82 (267)
                      +.+.+.+|++|+|.|....        +.|++...+......+        ....|+..    .+..|.|.++..+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            4688999999999998864        7899864433221111        12233322    34589999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |.|....
T Consensus        88 YyCa~~~   94 (110)
T d1oaql_          88 YFCALWY   94 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccc
Confidence            9999764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=7.6e-08  Score=61.66  Aligned_cols=67  Identities=22%  Similarity=0.412  Sum_probs=46.6

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++++|.|....     +.|++...+......+.        ...++..    ....|.|.++..+|+|.|.|
T Consensus         9 ~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyC   88 (119)
T d1f3rb2           9 SLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFC   88 (119)
T ss_dssp             SEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEe
Confidence            6788999999999999876     88998643332211111        1222221    22479999999999999999


Q ss_pred             EEEc
Q psy3045          86 VVNN   89 (267)
Q Consensus        86 ~~~~   89 (267)
                      ....
T Consensus        89 a~~~   92 (119)
T d1f3rb2          89 YQYN   92 (119)
T ss_dssp             EEES
T ss_pred             eccC
Confidence            8754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.52  E-value=1.4e-07  Score=59.38  Aligned_cols=68  Identities=21%  Similarity=0.420  Sum_probs=48.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+        ....|+..    ....|.|.+++.+|+|.|.|
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEE
Confidence            5788999999999998765     8899864443221111        12223332    23589999999999999999


Q ss_pred             EEEcC
Q psy3045          86 VVNNS   90 (267)
Q Consensus        86 ~~~~~   90 (267)
                      .+...
T Consensus        87 A~~~~   91 (108)
T d1nfde1          87 LSSYG   91 (108)
T ss_dssp             EEEET
T ss_pred             EeecC
Confidence            98643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.51  E-value=1.4e-07  Score=60.07  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=46.7

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc-----------CCceEEE-----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP-----------LNDRVKQ-----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++++|.|....    +.|++...+......+.           ...++..     ....|+|.++..+|+|.
T Consensus         9 ~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   88 (113)
T ss_dssp             SEEEEETTCCCEEEEECCTTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEE
T ss_pred             CEEEEeCCCCEEEEEEeCCCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCcee
Confidence            6788999999999999655    99998643322211110           1112211     13479999999999999


Q ss_pred             EEEEEEcC
Q psy3045          83 YLCVVNNS   90 (267)
Q Consensus        83 Y~C~~~~~   90 (267)
                      |.|.+...
T Consensus        89 YyCa~~~~   96 (113)
T d1nfdb1          89 YFCASSLR   96 (113)
T ss_dssp             ECEEEESS
T ss_pred             EEEEeecC
Confidence            99987643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-07  Score=57.48  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      ..|.|...|   .-.|..|++|+|.|....    +..+|++.....................+.|.+++..|+|.|+|..
T Consensus         3 pkPsLsa~P---~~~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           3 IKPTLSAQP---SPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCCEEEEES---CSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCEEEeeC---CCccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            357777766   346999999999999877    6666643221111100001111112357999999999999999998


Q ss_pred             EcCC
Q psy3045          88 NNSV   91 (267)
Q Consensus        88 ~~~~   91 (267)
                      ....
T Consensus        80 ~~~~   83 (98)
T d1ugna2          80 YDSN   83 (98)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            6544

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.51  E-value=1.7e-07  Score=59.72  Aligned_cols=69  Identities=23%  Similarity=0.422  Sum_probs=48.0

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc--------CCceEE------EEeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP--------LNDRVK------QVSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~--------~~~~~~------~~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+.        ...+..      .....|.|.++..+|+|.|.
T Consensus         8 ~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CeEEECCCCCEEEEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            6789999999999999877    88999644432211110        111111      12358999999999999999


Q ss_pred             EEEEcCC
Q psy3045          85 CVVNNSV   91 (267)
Q Consensus        85 C~~~~~~   91 (267)
                      |.+....
T Consensus        88 Ca~~~~~   94 (115)
T d1ogad1          88 CAGAGSQ   94 (115)
T ss_dssp             EEEECTT
T ss_pred             ccccCCC
Confidence            9886443

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.50  E-value=1e-06  Score=56.71  Aligned_cols=67  Identities=18%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      .++++.+|++++|.|.+.+       +.|++...+......             .....|+...      ...|.|.++.
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            5678899999999999875       889986433221111             0112344332      2369999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|+|.|.|....
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999999864

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.50  E-value=1.1e-07  Score=60.29  Aligned_cols=67  Identities=18%  Similarity=0.308  Sum_probs=46.8

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      +.+.+.+|++++|.|....     +.|++...+......+.        ...++..      ...+|.|.++..+|+|.|
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY   87 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE
Confidence            6788999999999998776     88998644332211110        1112221      135899999999999999


Q ss_pred             EEEEEc
Q psy3045          84 LCVVNN   89 (267)
Q Consensus        84 ~C~~~~   89 (267)
                      .|.+..
T Consensus        88 yCa~~~   93 (111)
T d1bd2d1          88 FCAAME   93 (111)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            998864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.7e-07  Score=60.16  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc-----------eeeeecccCccee---------ccccCCceEEE------EeeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-----------NMWFKFIEGSSRK---------VAVPLNDRVKQ------VSGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----------~~W~~~~~~~~~~---------~~~~~~~~~~~------~~~~l~i~~~~   76 (267)
                      ..+.+.+|++|.|.|.+..           +.|++...+....         .......|+..      .+.+|+|.+++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   87 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence            6789999999999999752           5577643322111         11112333332      24579999999


Q ss_pred             cCCCeeEEEEEEcCC
Q psy3045          77 VEDSGKYLCVVNNSV   91 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~   91 (267)
                      .+|+|.|.|.+....
T Consensus        88 ~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          88 PEDSGTYNFRFEISD  102 (118)
T ss_dssp             GGGCEEEEEEEECC-
T ss_pred             hhHCEEEEEEEEeCC
Confidence            999999999997653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.8e-07  Score=57.37  Aligned_cols=60  Identities=15%  Similarity=0.239  Sum_probs=46.0

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+..|++|+|.|... .....+.|+++|....        ......+.|.+++.+|+|.|+|...+...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            577899999999864 3356788999875321        12335799999999999999999877654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.4e-07  Score=56.79  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV   87 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   87 (267)
                      +|.+...|   .-.|..|++|+|.|....     +.|+|++.......      ........+.|.+++..|+|.|+|..
T Consensus         5 kP~Lsa~P---~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~------~~~~~~a~F~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           5 KPFLSADR---GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH------QSGEHPANFSLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCEEEESS---CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE------EECSSSEEEECCSCCGGGCEEEEEEE
T ss_pred             CCEEEEeC---CCccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE------cCCCcccEEEEeccccccCcEEEEEE
Confidence            57787776   447999999999998642     77888643211110      00112346899999999999999998


Q ss_pred             EcCC
Q psy3045          88 NNSV   91 (267)
Q Consensus        88 ~~~~   91 (267)
                      ....
T Consensus        76 ~~~~   79 (96)
T d1ucta2          76 WYNR   79 (96)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            7543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.48  E-value=2.3e-07  Score=58.85  Aligned_cols=67  Identities=22%  Similarity=0.414  Sum_probs=46.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc--------ccCCceEEE------EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA--------VPLNDRVKQ------VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~--------~~~~~~~~~------~~~~l~i~~~~~~d~G   81 (267)
                      ..+++.+|++|+|.|...+       +.|++...+......        ....+++..      ....|.|.++..+|+|
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            5789999999999998765       889996433221111        112233322      1348999999999999


Q ss_pred             eEEEEEEc
Q psy3045          82 KYLCVVNN   89 (267)
Q Consensus        82 ~Y~C~~~~   89 (267)
                      .|.|....
T Consensus        88 ~YyCA~~~   95 (111)
T d1cd0a_          88 DYYCQSYD   95 (111)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeecc
Confidence            99998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.47  E-value=3.9e-07  Score=58.18  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=45.5

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceec---------------ccc-CCceEEE------EeeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKV---------------AVP-LNDRVKQ------VSGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~---------------~~~-~~~~~~~------~~~~l~i~~   74 (267)
                      ..+.+.+|++|+|.|.+.+      +.|++...+.....               ... ...+...      ....|.|.+
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMN   85 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECS
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecc
Confidence            6889999999999999765      88998533221110               000 1122221      124799999


Q ss_pred             cccCCCeeEEEEEEc
Q psy3045          75 AKVEDSGKYLCVVNN   89 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~   89 (267)
                      ++.+|+|.|.|.+..
T Consensus        86 ~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          86 VKPEDSDFYFCATVG  100 (115)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCCcEEEEeEcC
Confidence            999999999998864

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.47  E-value=7.2e-07  Score=57.09  Aligned_cols=69  Identities=22%  Similarity=0.360  Sum_probs=47.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccc-------------cCCceEEEE-----eeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAV-------------PLNDRVKQV-----SGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~-------------~~~~~~~~~-----~~~l~i~~~~~~d   79 (267)
                      ....+.+|++|+|.|....     +.|++...+.......             ....++...     ...|.|.++..+|
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   88 (118)
T d2ij0c1           9 SMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPED   88 (118)
T ss_dssp             SEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGG
T ss_pred             CeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccccc
Confidence            5788999999999999866     8899964433221110             112233221     2479999999999


Q ss_pred             CeeEEEEEEcCC
Q psy3045          80 SGKYLCVVNNSV   91 (267)
Q Consensus        80 ~G~Y~C~~~~~~   91 (267)
                      +|.|.|.+....
T Consensus        89 sa~YyCa~~~~~  100 (118)
T d2ij0c1          89 SGFYVCSALAGS  100 (118)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CceEEEEEecCC
Confidence            999999987543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=5.6e-07  Score=57.78  Aligned_cols=65  Identities=12%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             CceEEEecCCCEEEEeEeCC----CCCceEEEEECCcc--CC-----------------------------CCCCCeEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG----NPVKTISWMKDGKP--VP-----------------------------DHNEPVFRI  185 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~----~p~~~~~W~~~~~~--~~-----------------------------~~~~~~l~i  185 (267)
                      +....+..|++++|.|....    .....+.|++....  ..                             ......|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            44457888999999998532    23447899873211  00                             001257999


Q ss_pred             ccCCCCCCeEEEEEEEcCCC
Q psy3045         186 DSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       186 ~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+++.+|+|.|.|.+.+..+
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC---
T ss_pred             CCCChHHCEEEEEEEEECCC
Confidence            99999999999999987653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=2.4e-07  Score=58.98  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc-----------CCceEEE-----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP-----------LNDRVKQ-----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+.           ...+...     ....|.|.++..+|+|.
T Consensus         8 ~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   87 (113)
T d1j8he1           8 RYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSM   87 (113)
T ss_dssp             SEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEE
T ss_pred             CEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCccc
Confidence            6788999999999998655    88999644432211111           1111211     12479999999999999


Q ss_pred             EEEEEEcC
Q psy3045          83 YLCVVNNS   90 (267)
Q Consensus        83 Y~C~~~~~   90 (267)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (113)
T d1j8he1          88 YLCASSST   95 (113)
T ss_dssp             EEEEEECT
T ss_pred             EEeeEccC
Confidence            99998753

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=5.7e-07  Score=57.16  Aligned_cols=66  Identities=15%  Similarity=0.450  Sum_probs=49.5

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCC
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~  193 (267)
                      ..|....+.+|+.++|.|...+.....+.|||..  ..+.                       ......|.|.++..+|+
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCC
Confidence            3455668899999999999877666689999832  1110                       11235899999999999


Q ss_pred             eEEEEEEEcCC
Q psy3045         194 GMYQCVIRNEQ  204 (267)
Q Consensus       194 g~y~C~~~~~~  204 (267)
                      |.|.|.+....
T Consensus        85 g~YyCa~~~~~   95 (113)
T d2bnqd1          85 ATYLCAVRPTS   95 (113)
T ss_dssp             EEEEEEEEESS
T ss_pred             cEEeEeEecCC
Confidence            99999987554

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=2.1e-07  Score=59.16  Aligned_cols=67  Identities=18%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDSGKYL   84 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~G~Y~   84 (267)
                      ..+.+.+|++|+|.|...+      +.|++...+......+.        ...++..    ....|.|.++..+|+|.|.
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   85 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYY   85 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEe
Confidence            5789999999999998765      88999644332221111        1112211    1347999999999999999


Q ss_pred             EEEEc
Q psy3045          85 CVVNN   89 (267)
Q Consensus        85 C~~~~   89 (267)
                      |.+..
T Consensus        86 Ca~~~   90 (112)
T d1kgcd1          86 CILPL   90 (112)
T ss_dssp             EECCC
T ss_pred             eeEec
Confidence            98754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.45  E-value=3.1e-07  Score=58.27  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      ..+.+.+|++|+|.|....          +.|++...+......+        ....++..    ....|.|.++..+|+
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   89 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   89 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC
Confidence            6789999999999998742          7899864443322211        12223332    235899999999999


Q ss_pred             eeEEEEEEc
Q psy3045          81 GKYLCVVNN   89 (267)
Q Consensus        81 G~Y~C~~~~   89 (267)
                      |.|.|....
T Consensus        90 avYyCa~~~   98 (113)
T d1n4xl_          90 GIYYCFQGS   98 (113)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEECC
Confidence            999997543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.44  E-value=4.7e-07  Score=57.56  Aligned_cols=68  Identities=18%  Similarity=0.357  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceeccc-----------cCCceEEE-----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAV-----------PLNDRVKQ-----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+           ....++..     ....|.|.++..+|+|.
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (113)
T d2ntsp1           7 RYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSAL   86 (113)
T ss_dssp             SEEEEETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccccee
Confidence            5788999999999999766    8899964433222111           11222211     12479999999999999


Q ss_pred             EEEEEEcC
Q psy3045          83 YLCVVNNS   90 (267)
Q Consensus        83 Y~C~~~~~   90 (267)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (113)
T d2ntsp1          87 YLCASSLA   94 (113)
T ss_dssp             EEEEEESS
T ss_pred             eeeeeeCC
Confidence            99998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.44  E-value=9.1e-09  Score=63.52  Aligned_cols=69  Identities=19%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             eEEecCCCeEEEEEEecc----eeeeecccCcceecc--------ccCCceEEE------EeeEEEEeecccCCCeeEEE
Q psy3045          24 RFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA--------VPLNDRVKQ------VSGTLIIKEAKVEDSGKYLC   85 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~--------~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C   85 (267)
                      +++|.+|++|+|.|....    +.|++...+......        .....|+..      ....|.|.+++.+|+|.|.|
T Consensus         2 slsV~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             CceECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            467899999999998877    999985332211100        111222221      12479999999999999999


Q ss_pred             EEEcCCC
Q psy3045          86 VVNNSVG   92 (267)
Q Consensus        86 ~~~~~~~   92 (267)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            9876544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.2e-07  Score=57.69  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             CceEEEecCCCEEEEeEeCCC---CCceEEEEECCccCC-------------------------CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDGKPVP-------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~~~~-------------------------~~~~~~l~i~~~~~~d  192 (267)
                      |....+.+|++++|.|.....   ....+.|++....-.                         ......|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            445578899999999986533   134678987431110                         0123579999999999


Q ss_pred             CeEEEEEEEcCCCCceEEEEEEEe
Q psy3045         193 KGMYQCVIRNEQESAQASGELKLG  216 (267)
Q Consensus       193 ~g~y~C~~~~~~~~~~~~~~l~v~  216 (267)
                      +|.|.|.+............|.|.
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCCceEeEEEEEE
Confidence            999999987554333444555554

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.43  E-value=6.8e-07  Score=54.69  Aligned_cols=61  Identities=25%  Similarity=0.538  Sum_probs=41.6

Q ss_pred             CCeEEEEEEecc-----eeeeecccCcceecccc-------CCceEEEE------eeEEEEeecccCCCeeEEEEEEcC
Q psy3045          30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVP-------LNDRVKQV------SGTLIIKEAKVEDSGKYLCVVNNS   90 (267)
Q Consensus        30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~-------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~   90 (267)
                      |++|+|.|....     +.|++...+......+.       ...|+...      ..+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            789999999776     89998644433221111       11222221      247999999999999999998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.43  E-value=4e-07  Score=57.56  Aligned_cols=68  Identities=13%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc--------CCceEEE------EeeEEEEeecccCCCeeE
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP--------LNDRVKQ------VSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~--------~~~~~~~------~~~~l~i~~~~~~d~G~Y   83 (267)
                      ..+.+.+|++|+|.|....     +.|++...+......+.        ...++..      ....|.|.++..+|+|.|
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Y   87 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVY   87 (110)
T ss_dssp             SEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCccc
Confidence            6789999999999998665     89999644332211111        1112221      124799999999999999


Q ss_pred             EEEEEcC
Q psy3045          84 LCVVNNS   90 (267)
Q Consensus        84 ~C~~~~~   90 (267)
                      .|.+...
T Consensus        88 yCA~~~~   94 (110)
T d1ac6a_          88 YCALSGG   94 (110)
T ss_dssp             EEEEEET
T ss_pred             ceeecCC
Confidence            9998654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.42  E-value=1.1e-06  Score=56.16  Aligned_cols=68  Identities=16%  Similarity=0.341  Sum_probs=46.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc------------cCCceEEEE------eeEEEEeeccc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV------------PLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~------------~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ..+.+.+|++|+|.|.+.+       +.|++...+......+            ....++...      ...|.|.++..
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            5788889999999998754       7899964433221111            122233321      23699999999


Q ss_pred             CCCeeEEEEEEcC
Q psy3045          78 EDSGKYLCVVNNS   90 (267)
Q Consensus        78 ~d~G~Y~C~~~~~   90 (267)
                      +|+|.|.|.....
T Consensus        89 ~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          89 EDEAIYYCSYGEG  101 (120)
T ss_dssp             GGCSEEEEEECCT
T ss_pred             ccceeEEEEEcCC
Confidence            9999999987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.42  E-value=2.3e-07  Score=58.69  Aligned_cols=67  Identities=24%  Similarity=0.352  Sum_probs=46.2

Q ss_pred             eeEEecCCCeEEEEEEecc----------eeeeecccCcceecccc--------CCceEEE----EeeEEEEeecccCCC
Q psy3045          23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVP--------LNDRVKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~--------~~~~~~~----~~~~l~i~~~~~~d~   80 (267)
                      ..+.+.+|++|+|.|....          +.|++...+......+.        ...++..    .+..|.|.++..+|+
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDs   88 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDL   88 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcC
Confidence            6789999999999998532          88998644433222211        1223322    224799999999999


Q ss_pred             eeEEEEEEc
Q psy3045          81 GKYLCVVNN   89 (267)
Q Consensus        81 G~Y~C~~~~   89 (267)
                      +.|.|...+
T Consensus        89 AvYYC~~~~   97 (112)
T d1ncwl1          89 GVYYCWQGT   97 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EeEEEEcCC
Confidence            999996543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.42  E-value=5e-07  Score=57.52  Aligned_cols=64  Identities=22%  Similarity=0.495  Sum_probs=48.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC-----------------------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP-----------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~-----------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      |....+.+|++++|.|.........+.||+...  ...                       .....+|.|..+..+|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            455688899999999998766666899998331  111                       0123579999999999999


Q ss_pred             EEEEEEcCC
Q psy3045         196 YQCVIRNEQ  204 (267)
Q Consensus       196 y~C~~~~~~  204 (267)
                      |.|.+....
T Consensus        87 Y~Ca~~~~~   95 (114)
T d2cdea1          87 YICVVSDRG   95 (114)
T ss_dssp             EEEEEECSC
T ss_pred             cceeeecCC
Confidence            999998754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=3.3e-07  Score=58.67  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceeccc---c------CCce------EEEEeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAV---P------LNDR------VKQVSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~---~------~~~~------~~~~~~~l~i~~~~~~d   79 (267)
                      ..+.+.+|++|+|.|....        +.|++...+.......   .      ...+      .......|.|.+++.+|
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVD   86 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcccc
Confidence            5778899999999999754        6799964333211100   0      0111      11123589999999999


Q ss_pred             CeeEEEEEEc
Q psy3045          80 SGKYLCVVNN   89 (267)
Q Consensus        80 ~G~Y~C~~~~   89 (267)
                      +|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (117)
T d1dqta_          87 TGLYLCKVEL   96 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEeEEEEEec
Confidence            9999999853

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.41  E-value=5.9e-07  Score=54.98  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=48.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      .|.|...|   ...|..|++|+|.|....    +.++|++.......... ..........+.|.+++..|+|.|.|...
T Consensus         2 KPsLsa~P---~~~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~~~~~-~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHP---GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIG-EHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEES---CSEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEEC-EEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeC---CCccCCCCcEEEEECCCCCCCEEEEEECCCcCCceeeee-eecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            46666555   568899999999999877    77777533221111110 00001234579999999999999999886


Q ss_pred             cC
Q psy3045          89 NS   90 (267)
Q Consensus        89 ~~   90 (267)
                      ..
T Consensus        78 ~~   79 (96)
T d1nkra1          78 VT   79 (96)
T ss_dssp             BT
T ss_pred             cC
Confidence            44

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=6.4e-07  Score=56.09  Aligned_cols=62  Identities=24%  Similarity=0.436  Sum_probs=45.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |..+.+.+|++++|.|.........+.||+..  ..+.                     ......|.|.++..+|+|.|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy   86 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY   86 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence            45568899999999998765555569999842  1110                     012357999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+.+
T Consensus        87 Ca~~~   91 (106)
T d1a0ql1          87 CLQYY   91 (106)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            98654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.6e-07  Score=57.68  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      +|.+...|   ...|..|++|+|.|....    +.++|++.......  .... .......+.|.+++..|+|.|+|...
T Consensus         4 kP~Lsa~P---s~~V~~G~~VTL~C~~~~~~~~f~L~keg~~~~~~~--~~~~-~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1           4 KPTLWAEP---GSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWIT--RIPQ-ELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CCEEEEES---CSEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHH--TSCH-HHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeEC---CCccCCCCcEEEEEeCCCCCCEEEEEECCCCcccEE--EccC-CCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            57777665   456889999999999766    66666532111100  0000 01123579999999999999999976


Q ss_pred             c
Q psy3045          89 N   89 (267)
Q Consensus        89 ~   89 (267)
                      .
T Consensus        78 ~   78 (96)
T d1ugna1          78 S   78 (96)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.7e-07  Score=57.64  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             eeEEecCCCeEEEEEEecc--------eeeeecccCcceecc---cc------------CCceEEEEeeEEEEeecccCC
Q psy3045          23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVA---VP------------LNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~---~~------------~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      ..+.+.+|++|+|.|.+..        +.|++...+......   ..            ...+.......|.|.+++.+|
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            5678899999999999754        779997444322110   00            001111234589999999999


Q ss_pred             CeeEEEEEEc
Q psy3045          80 SGKYLCVVNN   89 (267)
Q Consensus        80 ~G~Y~C~~~~   89 (267)
                      +|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (118)
T d1i8lc_          87 TGLYICKVEL   96 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeEec
Confidence            9999998864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=2.6e-07  Score=58.85  Aligned_cols=69  Identities=17%  Similarity=0.333  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc-----------CCceEE-----EEeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP-----------LNDRVK-----QVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....    +.|++...+........           ...+..     .....|.|.++..+|+|.
T Consensus         7 ~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~   86 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   86 (114)
T ss_dssp             SEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             CeEEEcCCCCEEEEEEEecCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence            6789999999999999776    89998644332211110           011111     112479999999999999


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |.|.+....
T Consensus        87 YyCa~~~~~   95 (114)
T d1ogae1          87 YLCASSSRS   95 (114)
T ss_dssp             EEEEEESST
T ss_pred             EEEeeccCC
Confidence            999876543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=1.1e-06  Score=55.10  Aligned_cols=64  Identities=17%  Similarity=0.347  Sum_probs=47.4

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      ..|....+.+|++++|.|...+.....+.||+..  ..+.                     ......|.|.++..+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            3455668899999999999776555579999832  1110                     1234689999999999999


Q ss_pred             EEEEEEc
Q psy3045         196 YQCVIRN  202 (267)
Q Consensus       196 y~C~~~~  202 (267)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9997643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=1.7e-06  Score=55.05  Aligned_cols=63  Identities=16%  Similarity=0.327  Sum_probs=46.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|++++|.|.........+.|||..  ..+.                       ......|.|.+++.+|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            44558899999999999776666689999842  1110                       0123569999999999999


Q ss_pred             EEEEEEcC
Q psy3045         196 YQCVIRNE  203 (267)
Q Consensus       196 y~C~~~~~  203 (267)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1lp9e1          88 YYCALFLA   95 (115)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEcC
Confidence            99987654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-06  Score=53.08  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=46.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+..|++|+|.|.........+.|+|+|.....     .....+.|.+++.+|+|+|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            788999999999864444457899999865332     23467899999999999999988654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=8.6e-07  Score=57.05  Aligned_cols=62  Identities=23%  Similarity=0.570  Sum_probs=46.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC---------C-----------------------CCCCeEEec
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP---------D-----------------------HNEPVFRID  186 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~---------~-----------------------~~~~~l~i~  186 (267)
                      |....+.+|++++|.|...+.....+.|++.  +..+.         .                       +....|.|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            5556888999999999987776678999972  22210         0                       011369999


Q ss_pred             cCCCCCCeEEEEEEEc
Q psy3045         187 SVRKEDKGMYQCVIRN  202 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~  202 (267)
                      +++.+|+|.|.|.+..
T Consensus        88 ~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccCCCEEEEeeEeC
Confidence            9999999999998753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=9.1e-07  Score=55.55  Aligned_cols=64  Identities=20%  Similarity=0.378  Sum_probs=47.2

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      ..|....+.+|++|+|.|.........+.||+..  ....                     ......|.|.++..+|+|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            3455668999999999999776655579999842  1110                     0124679999999999999


Q ss_pred             EEEEEEc
Q psy3045         196 YQCVIRN  202 (267)
Q Consensus       196 y~C~~~~  202 (267)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1kcvl1          86 YYCGQSY   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=6.2e-07  Score=56.13  Aligned_cols=62  Identities=23%  Similarity=0.487  Sum_probs=45.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|.........+.||+.  |....                     ..+...|.|.++..+|+|.|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence            4556789999999999876555557999974  22211                     012357999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+.+
T Consensus        88 Ca~~~   92 (106)
T d1i8ka_          88 CLQSF   92 (106)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            97643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.35  E-value=8.6e-07  Score=56.82  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=47.4

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcceec--------cccCCceEEE------EeeEEEEeecccCCCe
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV--------AVPLNDRVKQ------VSGTLIIKEAKVEDSG   81 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~--------~~~~~~~~~~------~~~~l~i~~~~~~d~G   81 (267)
                      ..+.+.+|++++|.|.+.+       +.|++...+.....        .....+|+..      ....|.|.+++.+|+|
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa   88 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG   88 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCc
Confidence            6888999999999999865       88998533321111        1112234332      1258999999999999


Q ss_pred             eEEEEEEcC
Q psy3045          82 KYLCVVNNS   90 (267)
Q Consensus        82 ~Y~C~~~~~   90 (267)
                      .|.|.....
T Consensus        89 ~YyCA~~~~   97 (120)
T d1hxma1          89 SYYCACDTL   97 (120)
T ss_dssp             EEEEEEECC
T ss_pred             eeecCcccC
Confidence            999997653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=6.9e-07  Score=56.08  Aligned_cols=63  Identities=22%  Similarity=0.467  Sum_probs=46.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .|....+.+|++++|.|.........+.||+..  ..+.                     ......|.|.+++.+|+|.|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            355668999999999998765555579999843  2211                     01236899999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1j1pl_          87 FCQQAN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEcCC
Confidence            997643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1.7e-06  Score=54.23  Aligned_cols=63  Identities=22%  Similarity=0.432  Sum_probs=46.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .|....+.+|++++|.|.........+.||+..  ..+.                     ......|.|.++..+|+|.|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            355668899999999999876555579999842  1110                     01235799999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|...+
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.32  E-value=1.4e-06  Score=55.52  Aligned_cols=63  Identities=21%  Similarity=0.372  Sum_probs=46.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC------------------------CCCCCeEEeccCCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      .+....+.+|++++|.|.........+.||+.  +....                        ......|.|.++..+|+
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDS   85 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccc
Confidence            34556889999999999876555567889973  22110                        11346799999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      |.|.|.+..
T Consensus        86 g~YyCa~~~   94 (115)
T d1i9ea_          86 AVYFCAVSG   94 (115)
T ss_dssp             EEEEEEEEE
T ss_pred             ceecccccC
Confidence            999998764

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=9.7e-07  Score=55.20  Aligned_cols=62  Identities=19%  Similarity=0.423  Sum_probs=46.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|.........+.||+..  ..+.                     ..+...|.|.++..+|+|.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            45557889999999999876666679999832  2210                     012358999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1c5cl1          88 CLQYA   92 (107)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            97643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2.5e-06  Score=54.10  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=46.0

Q ss_pred             CCceEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccCC------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPVP------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~~------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .|....+.+|++++|.|...+. ....+.||+..  ....                        ......|.|.++..+|
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            3556689999999999987644 34578999832  1110                        0112469999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999988654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.28  E-value=2.7e-07  Score=58.59  Aligned_cols=70  Identities=17%  Similarity=0.335  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc-----------CCceEE-----EEeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP-----------LNDRVK-----QVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~l~i~~~~~~d~G~   82 (267)
                      ..+.+.+|++|+|.|....    +.|++...+......+.           ...+..     .....|.|.++..+|+|.
T Consensus         6 ~~~~~~~G~svtL~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   85 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ   85 (112)
T ss_dssp             SEEEEETTCCBCCEEEETTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred             CEEEECCCCCEEEEEEEeCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence            5789999999999999765    99999644332211110           011111     123479999999999999


Q ss_pred             EEEEEEcCCC
Q psy3045          83 YLCVVNNSVG   92 (267)
Q Consensus        83 Y~C~~~~~~~   92 (267)
                      |.|.+....+
T Consensus        86 YyCA~~~~~~   95 (112)
T d2cdeb1          86 YLCASSENIG   95 (112)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEecCCC
Confidence            9999875543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=1.7e-06  Score=54.14  Aligned_cols=60  Identities=18%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      +...+.+|++++|.|...+.....+.||+..  ....                     ......|.|.+++.+|+|.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            3568899999999999876555679999742  1110                     0123679999999999999999


Q ss_pred             EEE
Q psy3045         199 VIR  201 (267)
Q Consensus       199 ~~~  201 (267)
                      ...
T Consensus        88 a~~   90 (106)
T d1lk3l1          88 QQS   90 (106)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=1.8e-06  Score=54.06  Aligned_cols=63  Identities=19%  Similarity=0.374  Sum_probs=46.1

Q ss_pred             cCCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeE
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      ..|..+.+.+|++++|.|.........+.||+..  ..+.                     ......|.|.++..+|++.
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence            3455668899999999998765544579999842  1110                     0123679999999999999


Q ss_pred             EEEEEE
Q psy3045         196 YQCVIR  201 (267)
Q Consensus       196 y~C~~~  201 (267)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1mexl1          86 YFCQQY   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEeEC
Confidence            999754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=1.7e-06  Score=55.10  Aligned_cols=64  Identities=13%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC------------------------CCCCCeEEeccCCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      .+....+.+|+.++|.|.........+.||+..  +.+.                        ......|.|.++..+|+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            345568999999999999765555679999832  2110                        01235799999999999


Q ss_pred             eEEEEEEEcC
Q psy3045         194 GMYQCVIRNE  203 (267)
Q Consensus       194 g~y~C~~~~~  203 (267)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999998754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.3e-07  Score=56.34  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec-----cccCCceEEEEeeEEEEeecccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-----AVPLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      .+|.+.+.+  .......++.++|.|.+.+       +.|++++.......     .....++.....+.|.|..-.+..
T Consensus         3 ~~P~V~v~~--p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~   80 (105)
T d1fp5a2           3 AAPEVYAFA--TPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQ   80 (105)
T ss_dssp             BCCEEEEEE--CCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTT
T ss_pred             CCCEEEEEC--CChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCC
Confidence            456655554  2233445778999999988       99999744322111     111223334455678887776667


Q ss_pred             CeeEEEEEEcCCC
Q psy3045          80 SGKYLCVVNNSVG   92 (267)
Q Consensus        80 ~G~Y~C~~~~~~~   92 (267)
                      ...|+|.+.+...
T Consensus        81 g~~ytC~V~H~~l   93 (105)
T d1fp5a2          81 KDEFICRAVHEAA   93 (105)
T ss_dssp             GGGEEEEEECTTS
T ss_pred             CCEEEEEEEECCC
Confidence            7789999998654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=2.3e-06  Score=54.63  Aligned_cols=64  Identities=17%  Similarity=0.451  Sum_probs=46.9

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC--------------C-------------CCCCeEEeccCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP--------------D-------------HNEPVFRIDSVRK  190 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~--------------~-------------~~~~~l~i~~~~~  190 (267)
                      .|....+.+|++++|.|...+.....+.|||.  |+.+.              .             .+...|.|.++..
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            34556888999999999977666668999983  22110              0             0124699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy3045         191 EDKGMYQCVIRNE  203 (267)
Q Consensus       191 ~d~g~y~C~~~~~  203 (267)
                      +|+|.|.|.+...
T Consensus        87 ~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          87 EDSGFYVCSALAG   99 (118)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCceEEEEEecC
Confidence            9999999998654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.25  E-value=1.3e-06  Score=55.30  Aligned_cols=67  Identities=15%  Similarity=0.216  Sum_probs=45.7

Q ss_pred             eeEEecCCCeEEEEEEecc----eeeeecccCcceecccc-----------CCceEEE-----EeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVP-----------LNDRVKQ-----VSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~l~i~~~~~~d~G~   82 (267)
                      ....+.+|++++|.|....    +.|++...+........           ...+...     .+..|.|.++..+|+|.
T Consensus         7 ~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             SEEEEETTCCEEEEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            5678999999999998766    99999644332211110           0111111     12479999999999999


Q ss_pred             EEEEEEc
Q psy3045          83 YLCVVNN   89 (267)
Q Consensus        83 Y~C~~~~   89 (267)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (112)
T d2bnub1          87 YFCASSY   93 (112)
T ss_dssp             EEEEEEC
T ss_pred             EEEeecC
Confidence            9998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=2.1e-06  Score=53.92  Aligned_cols=62  Identities=23%  Similarity=0.428  Sum_probs=45.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|.........+.||+..  +...                     ......|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            45567889999999999775555569999832  2110                     012367999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+..
T Consensus        88 CA~~~   92 (109)
T d1mqkl_          88 CQHHY   92 (109)
T ss_dssp             EEECS
T ss_pred             EeeeC
Confidence            98754

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.24  E-value=1.8e-06  Score=54.02  Aligned_cols=62  Identities=21%  Similarity=0.446  Sum_probs=46.2

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .|....+.+|++++|.|.........+.||+..  ..+.                     ......|.|.++..+|+|.|
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            355668899999999999876556689999842  2110                     01235799999999999999


Q ss_pred             EEEEE
Q psy3045         197 QCVIR  201 (267)
Q Consensus       197 ~C~~~  201 (267)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1tjgl1          87 YCQQL   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.24  E-value=5.1e-06  Score=51.87  Aligned_cols=65  Identities=20%  Similarity=0.325  Sum_probs=44.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE------eeEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ...+++|++++|.|.+.+       +.|++...+....             .......|+...      ...|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            456889999999999887       8898864332211             111123344332      12599999999


Q ss_pred             CCCeeEEEEEE
Q psy3045          78 EDSGKYLCVVN   88 (267)
Q Consensus        78 ~d~G~Y~C~~~   88 (267)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (115)
T d1f3dh1          89 EDSAVYYCAND   99 (115)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCcEEEEEecc
Confidence            99999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.1e-06  Score=52.89  Aligned_cols=62  Identities=26%  Similarity=0.400  Sum_probs=45.2

Q ss_pred             EEecCCCEEEEeEeCCCC----CceEEEEECCccCC--------------------CCCCCeEEeccCCCCCCeEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVP--------------------DHNEPVFRIDSVRKEDKGMYQCVI  200 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~~~--------------------~~~~~~l~i~~~~~~d~g~y~C~~  200 (267)
                      ....|++++|.|......    ...+.|.+++..+.                    ...+.+|.|.+++.+|+|.|.|.+
T Consensus         5 t~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V   84 (105)
T d1dr9a1           5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVV   84 (105)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEE
T ss_pred             EEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEE
Confidence            677899999999765322    23677877664431                    123568999999999999999999


Q ss_pred             EcCCCC
Q psy3045         201 RNEQES  206 (267)
Q Consensus       201 ~~~~~~  206 (267)
                      .+..+.
T Consensus        85 ~~~~~~   90 (105)
T d1dr9a1          85 LKYEKD   90 (105)
T ss_dssp             EECCTT
T ss_pred             EeCCCC
Confidence            865433

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.23  E-value=1.8e-06  Score=54.65  Aligned_cols=62  Identities=24%  Similarity=0.494  Sum_probs=45.5

Q ss_pred             CceEEEecCCCEEEEeEeCCC--CCceEEEEEC--CccCC---------------CCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN--PVKTISWMKD--GKPVP---------------DHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~--~~~~~---------------~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      |....+.+|++++|.|..++.  ....+.||+.  +....               ......|+|.+++.+|+|.|.|.+.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeee
Confidence            455688899999999987643  4457999973  22211               1123579999999999999999986


Q ss_pred             c
Q psy3045         202 N  202 (267)
Q Consensus       202 ~  202 (267)
                      .
T Consensus        87 ~   87 (113)
T d1vesa_          87 Y   87 (113)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.1e-06  Score=51.74  Aligned_cols=61  Identities=21%  Similarity=0.369  Sum_probs=42.9

Q ss_pred             EEEecCCCEEEEeEeCCC--CCceEEEEECC--ccC----------C-------------CCCCCeEEeccCCCCCCeEE
Q psy3045         144 QTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPV----------P-------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~----------~-------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      ..+.+|++++|.|.....  ....+.|+|..  ...          .             ......|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            478889999999986533  23467898732  110          0             01235799999999999999


Q ss_pred             EEEEEcCC
Q psy3045         197 QCVIRNEQ  204 (267)
Q Consensus       197 ~C~~~~~~  204 (267)
                      .|.+....
T Consensus        86 ~C~v~~~~   93 (108)
T d1hkfa_          86 WCRIYRPS   93 (108)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            99987554

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=4.8e-06  Score=52.39  Aligned_cols=62  Identities=15%  Similarity=0.347  Sum_probs=44.9

Q ss_pred             ceEEEecCCCEEEEeEeCCC-CCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGN-PVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      ..+.+.+|++++|.|..... ....+.||+.  +..+.                     ......|.|.++..+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            45688899999999986543 3456899983  22211                     112357999999999999999


Q ss_pred             EEEEcC
Q psy3045         198 CVIRNE  203 (267)
Q Consensus       198 C~~~~~  203 (267)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            987643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=1.6e-06  Score=54.72  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=45.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      |....+.+|++++|.|.........+.||+..  ....                       ......|.|.++..+|+|.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            44557889999999999776555579999842  2111                       0123579999999999999


Q ss_pred             EEEEEEc
Q psy3045         196 YQCVIRN  202 (267)
Q Consensus       196 y~C~~~~  202 (267)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=9.1e-06  Score=51.48  Aligned_cols=62  Identities=16%  Similarity=0.413  Sum_probs=45.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      |....+.+|++++|.|...+. ...+.||+..  ..+.                       ......|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            445688999999999997654 3479999832  1110                       1124679999999999999


Q ss_pred             EEEEEEcC
Q psy3045         196 YQCVIRNE  203 (267)
Q Consensus       196 y~C~~~~~  203 (267)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (115)
T d1ogad1          86 YLCAGAGS   93 (115)
T ss_dssp             EEEEEECT
T ss_pred             EcccccCC
Confidence            99987643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.22  E-value=2.9e-06  Score=53.92  Aligned_cols=62  Identities=23%  Similarity=0.528  Sum_probs=45.5

Q ss_pred             CceEEEecCCCEEEEeEeCCC-CCceEEEEECC-----ccC------------------C----------CCCCCeEEec
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG-----KPV------------------P----------DHNEPVFRID  186 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~-----~~~------------------~----------~~~~~~l~i~  186 (267)
                      |....+.+|++++|.|...+. ....+.||+..     +.+                  .          ......|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            455689999999999998764 45678999732     111                  0          0123579999


Q ss_pred             cCCCCCCeEEEEEEEc
Q psy3045         187 SVRKEDKGMYQCVIRN  202 (267)
Q Consensus       187 ~~~~~d~g~y~C~~~~  202 (267)
                      ++..+|+|.|.|.+..
T Consensus        85 ~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          85 NVKPEDSDFYFCATVG  100 (115)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCCcEEEEeEcC
Confidence            9999999999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.21  E-value=5e-06  Score=52.44  Aligned_cols=63  Identities=16%  Similarity=0.351  Sum_probs=46.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC-----------------------CCCCCeEEeccCCCCCCe
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~-----------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      .+....+.+|++++|.|...+.....+.||+.  |+...                       ......|.|.++..+|+|
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSA   85 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccE
Confidence            34555788999999999876655557889983  22211                       113468999999999999


Q ss_pred             EEEEEEEc
Q psy3045         195 MYQCVIRN  202 (267)
Q Consensus       195 ~y~C~~~~  202 (267)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (111)
T d1bd2d1          86 VYFCAAME   93 (111)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99998764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.21  E-value=3.7e-06  Score=51.69  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      +||.+.+.+.  . .+..|+.++|.|.+.+       +.|++++........    ....+......+.|.+   ...+.
T Consensus         2 ~pP~V~v~p~--~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v---~~~~~   75 (100)
T d1muja1           2 EAPQATVFPK--S-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF---IPSDD   75 (100)
T ss_dssp             CCCEEEEEES--S-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEE---CCCTT
T ss_pred             CCCEEEEEcC--C-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEE---cCCCC
Confidence            4677777652  2 3567899999999999       999997543321111    1112222233344544   34567


Q ss_pred             eeEEEEEEcCCC
Q psy3045          81 GKYLCVVNNSVG   92 (267)
Q Consensus        81 G~Y~C~~~~~~~   92 (267)
                      +.|+|.+.+..-
T Consensus        76 ~~ytC~V~H~sl   87 (100)
T d1muja1          76 DIYDCKVEHWGL   87 (100)
T ss_dssp             CCEEEEEECTTS
T ss_pred             CEEEEEEEECCC
Confidence            789999998643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.21  E-value=2.7e-06  Score=53.25  Aligned_cols=62  Identities=23%  Similarity=0.454  Sum_probs=45.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|.........+.||+...  ...                     ......|.|.++..+|+|.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            455578899999999997766556789997421  110                     012367999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |...+
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            97543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=2.8e-06  Score=53.38  Aligned_cols=63  Identities=22%  Similarity=0.454  Sum_probs=46.3

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .|..+.+.+|++++|.|...+.....+.||+..  ....                     ..+...|.|.+++.+|+|.|
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Y   88 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATY   88 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceE
Confidence            355668899999999999876655678999832  1110                     01235799999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|.+..
T Consensus        89 yCA~~~   94 (109)
T d1bwwa_          89 YCQQYQ   94 (109)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.21  E-value=4e-06  Score=53.18  Aligned_cols=65  Identities=17%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             CCceEEEecCCCEEEEeEeCC-CCCceEEEEEC--CccCC------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKD--GKPVP------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~--~~~~~------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .+....+.+|++|+|.|.... .....+.||+.  +..+.                        ......|.|.++..+|
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVD   85 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccccc
Confidence            345558899999999998543 33456889983  22211                        0123579999999999


Q ss_pred             CeEEEEEEEcCC
Q psy3045         193 KGMYQCVIRNEQ  204 (267)
Q Consensus       193 ~g~y~C~~~~~~  204 (267)
                      +|.|.|.+....
T Consensus        86 sg~YyCa~~~~~   97 (114)
T d2ak4d1          86 SAVYFCALSGFY   97 (114)
T ss_dssp             CEEEEEEEECSB
T ss_pred             CCCceEeCCCCC
Confidence            999999876543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=5.3e-06  Score=52.20  Aligned_cols=67  Identities=21%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE------eeEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ...+++|++|+|.|.+.+       +.|++...+....             .......|+...      ...|.|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            447889999999999876       7898864432211             111123344332      13599999999


Q ss_pred             CCCeeEEEEEEcC
Q psy3045          78 EDSGKYLCVVNNS   90 (267)
Q Consensus        78 ~d~G~Y~C~~~~~   90 (267)
                      +|++.|.|.....
T Consensus        89 eDsAvYYCA~~~~  101 (119)
T d1qnzh_          89 DDSAVYYCAIHYG  101 (119)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             cceeEEEEEEecC
Confidence            9999999976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.20  E-value=1.9e-06  Score=53.87  Aligned_cols=62  Identities=18%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|...+.....+.||+..  +.+.                     ......|.|.+++.+|+|.|.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH   86 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence            55568899999999998776555578999843  1111                     012357999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1op3k1          87 CQHYA   91 (106)
T ss_dssp             EEEEC
T ss_pred             eeeCC
Confidence            98653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.20  E-value=1.8e-06  Score=53.72  Aligned_cols=61  Identities=20%  Similarity=0.390  Sum_probs=44.7

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      +...+.+|++++|.|.........+.|||..  ..+.                     ..+...|.|.++..+|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            3557899999999998765555578999843  1110                     0123679999999999999999


Q ss_pred             EEEc
Q psy3045         199 VIRN  202 (267)
Q Consensus       199 ~~~~  202 (267)
                      .+.+
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.3e-06  Score=55.01  Aligned_cols=62  Identities=13%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEeEeCC-CCCc--eEEEEECCccCCCC--------C-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYEG-NPVK--TISWMKDGKPVPDH--------N-----EPVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~-~p~~--~~~W~~~~~~~~~~--------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+.+|+.++|.|.+.+ .|.+  .+.|++++..+...        .     .+.|.+.....++...|+|.|++..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            4678999999999876 4643  68999988765311        1     133555544444455999999987644

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=8.5e-06  Score=51.40  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             eeEEecCCCeEEEEEEecc-----eeeeecccCcceecccc------------CCceEE---EEeeEEEEeecccCCCee
Q psy3045          23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVP------------LNDRVK---QVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~------------~~~~~~---~~~~~l~i~~~~~~d~G~   82 (267)
                      ....+.+|++++|.|....     +.|++...+........            ...++.   ..+..|.|.....+|++.
T Consensus         9 ~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~   88 (112)
T d1fo0b_           9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRT   88 (112)
T ss_dssp             SEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEE
T ss_pred             CeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCcc
Confidence            6778999999999999776     88999744433222111            112222   123478999999999999


Q ss_pred             EEEEEEcC
Q psy3045          83 YLCVVNNS   90 (267)
Q Consensus        83 Y~C~~~~~   90 (267)
                      |.|.....
T Consensus        89 Y~Ca~~~~   96 (112)
T d1fo0b_          89 LYCTCSAD   96 (112)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEecC
Confidence            99997543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.17  E-value=9.1e-06  Score=50.63  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEE------eeEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQV------SGTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~------~~~l~i~~~~~~   78 (267)
                      ...+++|++++|.|.+.+       +.|++...+...            ........|+...      ...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            457889999999999987       889886333211            1112233444432      136899999999


Q ss_pred             CCeeEEEEEEcCC
Q psy3045          79 DSGKYLCVVNNSV   91 (267)
Q Consensus        79 d~G~Y~C~~~~~~   91 (267)
                      |++.|.|......
T Consensus        89 DtAvYyCAr~~~~  101 (116)
T d7fabh1          89 DTAVYYCARNLIA  101 (116)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cceEEEeeeecCC
Confidence            9999999875443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.17  E-value=7.8e-06  Score=51.23  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=46.3

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEE--e----eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQV--S----GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~--~----~~l~i~~~~~~   78 (267)
                      ...+.+|+++.|.|.+.+       +.|++...+...            ........|+...  +    ..|.|.+++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            457899999999999887       889886433211            1111223444432  1    26999999999


Q ss_pred             CCeeEEEEEEcC
Q psy3045          79 DSGKYLCVVNNS   90 (267)
Q Consensus        79 d~G~Y~C~~~~~   90 (267)
                      |++.|.|.....
T Consensus        88 DtA~YYCAr~~~   99 (119)
T d1kxvc_          88 DTAMYYCKPSLR   99 (119)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CcceEeeeeccc
Confidence            999999987543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=7.8e-06  Score=50.95  Aligned_cols=69  Identities=17%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+....             .......|+...  +    ..|.|.+++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3567899999999999987       7898864433211             111234444432  1    259999999


Q ss_pred             cCCCeeEEEEEEcCC
Q psy3045          77 VEDSGKYLCVVNNSV   91 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~   91 (267)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          88 SDDTAVYYCAVPDPD  102 (117)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             cCcceEEEEeEcCCC
Confidence            999999999976543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=1.7e-06  Score=54.20  Aligned_cols=61  Identities=15%  Similarity=0.382  Sum_probs=44.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |..+.+.+|++++|.|.........+.||+..  ..+.                     ..+...|.|.+++.+|+|.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            34447888999999999776655679999742  2110                     012468999999999999999


Q ss_pred             EEEE
Q psy3045         198 CVIR  201 (267)
Q Consensus       198 C~~~  201 (267)
                      |.+.
T Consensus        88 Ca~~   91 (107)
T d3cx5k1          88 CQHH   91 (107)
T ss_dssp             EEEC
T ss_pred             eeeC
Confidence            9754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=1e-05  Score=46.46  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE---E-----eeEEEEeecccCCCeeEEEEEE
Q psy3045          23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ---V-----SGTLIIKEAKVEDSGKYLCVVN   88 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~---~-----~~~l~i~~~~~~d~G~Y~C~~~   88 (267)
                      ..-++..|+.+.|.|.+.-      ++|.|-+...  -..+......+.   .     -..|.+..+-.+|.|.|+|.+.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~--cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTI--WVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSS--EEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcE--EEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            4678999999999999988      9999852211  122221111111   1     1368899999999999999998


Q ss_pred             cCCCc
Q psy3045          89 NSVGG   93 (267)
Q Consensus        89 ~~~~~   93 (267)
                      -..+-
T Consensus        89 f~s~v   93 (104)
T d1xaua_          89 FNSQV   93 (104)
T ss_dssp             ETTEE
T ss_pred             CChhh
Confidence            65543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.9e-06  Score=50.84  Aligned_cols=57  Identities=23%  Similarity=0.425  Sum_probs=45.0

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC--------CCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      .+..|++|+|.|... .+...+.++|+|....        ..+...+.|.+++.+|+|.|+|....
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            678999999999964 3455788889886421        12457899999999999999998754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2e-06  Score=54.98  Aligned_cols=65  Identities=14%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             EEecCCCeEEEEEEecc--------eeeeecccCcceecc----------ccCCce--EEE----EeeEEEEeecccCCC
Q psy3045          25 FKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVA----------VPLNDR--VKQ----VSGTLIIKEAKVEDS   80 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~----------~~~~~~--~~~----~~~~l~i~~~~~~d~   80 (267)
                      ..+.+|++|+|.|....        +.|++...+......          .....+  ...    ...+|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            45678999999998765        456664222111000          011112  111    123799999999999


Q ss_pred             eeEEEEEEc
Q psy3045          81 GKYLCVVNN   89 (267)
Q Consensus        81 G~Y~C~~~~   89 (267)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.15  E-value=4.3e-06  Score=53.15  Aligned_cols=65  Identities=22%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             CCceEEEecCCCEEEEeEeCCC-CCceEEEEEC--CccCC------C--------------------CCCCeEEeccCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKD--GKPVP------D--------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~--~~~~~------~--------------------~~~~~l~i~~~~~  190 (267)
                      .+....+.+|++++|.|..... ....+.||+.  +..+.      .                    .....|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3455688899999999986543 4567999972  22110      0                    0124689999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy3045         191 EDKGMYQCVIRNEQ  204 (267)
Q Consensus       191 ~d~g~y~C~~~~~~  204 (267)
                      +|+|.|.|.+....
T Consensus        86 ~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          86 EDSATYYCAFTLPP   99 (116)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             cccccceeeEecCC
Confidence            99999999887544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.15  E-value=1.1e-05  Score=50.64  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEEe------eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+....      ..|.+.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            4667999999999999987       889886433221             11112334544321      258999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999998754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=1.1e-05  Score=50.17  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEEe------eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQVS------GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~~------~~l~i~~~~~~   78 (267)
                      ...+++|++++|.|.+.+       +.|++...+...            ........|+....      ..|.+.++..+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            457899999999999997       888886333221            11122344554321      36899999999


Q ss_pred             CCeeEEEEEE
Q psy3045          79 DSGKYLCVVN   88 (267)
Q Consensus        79 d~G~Y~C~~~   88 (267)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.14  E-value=1.2e-05  Score=50.61  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|++++|.|.+.+       +.|++...+....-             ......|+...  +    ..|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            457889999999999886       88998744432211             11123344332  1    2589999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999998753

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=1.1e-05  Score=51.00  Aligned_cols=63  Identities=13%  Similarity=0.312  Sum_probs=45.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC-------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP-------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~-------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .|....+.+|++++|.|.... ....+.||+...  .+.                         ......|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            345568889999999999753 345789998432  110                         0123579999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999977654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.13  E-value=8.4e-06  Score=51.51  Aligned_cols=63  Identities=16%  Similarity=0.504  Sum_probs=45.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC----------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP----------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~----------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      +..+.+.+|++++|.|...+. ...+.||+..  ..+.                      ......|.|.++..+|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            455688899999999987643 3468999832  1110                      01235799999999999999


Q ss_pred             EEEEEcCC
Q psy3045         197 QCVIRNEQ  204 (267)
Q Consensus       197 ~C~~~~~~  204 (267)
                      .|.+....
T Consensus        87 yCa~~~~~   94 (113)
T d1h5ba_          87 FCAAEASS   94 (113)
T ss_dssp             EEEEECSS
T ss_pred             EEEecCCC
Confidence            99986543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.13  E-value=1.1e-05  Score=50.63  Aligned_cols=65  Identities=18%  Similarity=0.263  Sum_probs=45.1

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEEe------eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQVS------GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~~------~~l~i~~~~~~   78 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...            ........|+....      ..|.|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            457889999999999987       779886443221            11112344554321      25999999999


Q ss_pred             CCeeEEEEEE
Q psy3045          79 DSGKYLCVVN   88 (267)
Q Consensus        79 d~G~Y~C~~~   88 (267)
                      |++.|.|...
T Consensus        89 DtA~YYCAr~   98 (120)
T d1dn0b1          89 DTAVYYCARP   98 (120)
T ss_dssp             GCEEEEEEEC
T ss_pred             cccEEEEEee
Confidence            9999999543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.6e-06  Score=53.52  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             CceEEEecCCCEEEEeEeCCC-------CCceEEEEECCccCC----------------------------CCCCCeEEe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-------PVKTISWMKDGKPVP----------------------------DHNEPVFRI  185 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-------p~~~~~W~~~~~~~~----------------------------~~~~~~l~i  185 (267)
                      +....+.+|+.|.|.|..+..       ....+.|++....-.                            .....+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            344588899999999986411       123678988532210                            012357999


Q ss_pred             ccCCCCCCeEEEEEEEcC
Q psy3045         186 DSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       186 ~~~~~~d~g~y~C~~~~~  203 (267)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.3e-06  Score=54.30  Aligned_cols=63  Identities=21%  Similarity=0.476  Sum_probs=44.6

Q ss_pred             CceEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccCC--------C-------------------CCCCeEEeccCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPVP--------D-------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~~--------~-------------------~~~~~l~i~~~~~  190 (267)
                      |....+.+|++++|.|...+. ....+.|+|..  ..+.        .                   .+...|.|.++..
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            444578889999999987654 34568999833  1110        0                   0124699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy3045         191 EDKGMYQCVIRNE  203 (267)
Q Consensus       191 ~d~g~y~C~~~~~  203 (267)
                      +|+|.|.|.+...
T Consensus        87 ~Dsg~YyCa~~~~   99 (114)
T d1akjd_          87 ENEGYYFCSALSN   99 (114)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCEEEeEeEcCC
Confidence            9999999998643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.12  E-value=5.2e-06  Score=52.30  Aligned_cols=63  Identities=19%  Similarity=0.422  Sum_probs=45.6

Q ss_pred             CceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccC----CC-----------CCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPV----PD-----------HNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~----~~-----------~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      |....+.+|++++|.|...+.  ....+.||+..  ...    ..           .....|.|.++..+|+|.|.|.+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            445578889999999987643  35689999832  111    10           123579999999999999999876


Q ss_pred             cC
Q psy3045         202 NE  203 (267)
Q Consensus       202 ~~  203 (267)
                      ..
T Consensus        86 ~~   87 (112)
T d1sq2n_          86 VA   87 (112)
T ss_dssp             BT
T ss_pred             cC
Confidence            54

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.11  E-value=9.8e-06  Score=50.55  Aligned_cols=65  Identities=22%  Similarity=0.305  Sum_probs=44.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEE--Ee----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQ--VS----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~--~~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+..  ++    ..|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~   87 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence            4667899999999999987       778886443321             111112334332  21    358999999


Q ss_pred             cCCCeeEEEEE
Q psy3045          77 VEDSGKYLCVV   87 (267)
Q Consensus        77 ~~d~G~Y~C~~   87 (267)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (117)
T d1mfah1          88 SEDSAVYYCTR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEec
Confidence            99999999975

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.11  E-value=4.2e-06  Score=52.45  Aligned_cols=63  Identities=17%  Similarity=0.394  Sum_probs=45.7

Q ss_pred             cCCceEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCe
Q psy3045         139 VEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       139 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      ..|....+.+|++++|.|..... ....+.||+..  ..+.                     ..+...|.|.++..+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            34556688999999999987644 34578999842  2110                     012357999999999999


Q ss_pred             EEEEEEE
Q psy3045         195 MYQCVIR  201 (267)
Q Consensus       195 ~y~C~~~  201 (267)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999764

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.11  E-value=1.7e-05  Score=49.30  Aligned_cols=67  Identities=21%  Similarity=0.308  Sum_probs=46.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...  +    ..|.+.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            3568899999999999998       888886333211             1112234444432  1    358899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999997654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=50.66  Aligned_cols=61  Identities=21%  Similarity=0.535  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEeEeCCC---CCceEEEE--ECCccCC-----------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         145 TIDFGRPAQFTCKYEGN---PVKTISWM--KDGKPVP-----------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~---p~~~~~W~--~~~~~~~-----------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .+..|++++|.|.....   +...+.|+  +++....                       .....+|.|.+++.+|+|.|
T Consensus         5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y   84 (110)
T d1ncna_           5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY   84 (110)
T ss_dssp             EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred             EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence            67779999999987532   22334443  3322110                       01346799999999999999


Q ss_pred             EEEEEcCCC
Q psy3045         197 QCVIRNEQE  205 (267)
Q Consensus       197 ~C~~~~~~~  205 (267)
                      .|.+.....
T Consensus        85 ~C~V~~~~~   93 (110)
T d1ncna_          85 QCIIHHKKP   93 (110)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEecCC
Confidence            999975543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.11  E-value=8e-06  Score=51.53  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             eEEecCCCeEEEEEEecc---------eeeeecccCcceec------------cccCCceEEEE------eeEEEEeecc
Q psy3045          24 RFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKV------------AVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~------------~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ...+.+|++|+|.|.+.+         +.|++...+....-            ......|+...      ...|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            345788999999999765         67998644332111            01123455432      2469999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997553

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.10  E-value=1.4e-05  Score=49.84  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+..++...             ........|+...  +    ..|.+.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            3567899999999999998       788886333211             1111233444332  1    258999999


Q ss_pred             cCCCeeEEEEEEcCC
Q psy3045          77 VEDSGKYLCVVNNSV   91 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~~   91 (267)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          88 SEDTALYYCARLHYY  102 (118)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             CCcceEEEeeEecCC
Confidence            999999999876543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.10  E-value=4.8e-06  Score=52.12  Aligned_cols=62  Identities=18%  Similarity=0.377  Sum_probs=45.1

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      +...+.+|++++|.|.........+.||+..  +.+.                     ......|.|.+++.+|+|.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            3458889999999998665444579999743  2110                     0123578999999999999999


Q ss_pred             EEEcC
Q psy3045         199 VIRNE  203 (267)
Q Consensus       199 ~~~~~  203 (267)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            87643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.10  E-value=1.1e-05  Score=50.20  Aligned_cols=66  Identities=24%  Similarity=0.325  Sum_probs=45.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.+.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            3467899999999999987       888886433211             1111223444432  1    258999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1nlbh1          88 NEDTATYFCARF   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEEeee
Confidence            999999999643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.10  E-value=1.6e-05  Score=49.44  Aligned_cols=66  Identities=15%  Similarity=0.298  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEE--e----eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQV--S----GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~--~----~~l~i~~~~~~   78 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...            ........|+...  +    ..|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            457889999999999997       788886333221            1111233444332  2    25999999999


Q ss_pred             CCeeEEEEEEc
Q psy3045          79 DSGKYLCVVNN   89 (267)
Q Consensus        79 d~G~Y~C~~~~   89 (267)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.10  E-value=1e-05  Score=50.47  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEEe------eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+....      ..|.+.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            4567899999999999987       888886443321             11111234443321      258999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (118)
T d2jelh1          88 SEDSAIYYCARV   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceeeeEEEe
Confidence            999999999653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.10  E-value=1.7e-05  Score=48.73  Aligned_cols=67  Identities=25%  Similarity=0.304  Sum_probs=46.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee---------------ccccCCceEEEEe------eEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---------------VAVPLNDRVKQVS------GTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---------------~~~~~~~~~~~~~------~~l~i~~   74 (267)
                      ....+++|+++.|.|.+.+       +.|++...+....               .......|+....      ..|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            3568899999999999987       8898864443211               1112234544321      3589999


Q ss_pred             cccCCCeeEEEEEEc
Q psy3045          75 AKVEDSGKYLCVVNN   89 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~~   89 (267)
                      ++.+|++.|.|....
T Consensus        88 L~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          88 LKTEDTGIYYCVRGR  102 (109)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHhHCEEEEEEEcC
Confidence            999999999998543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.10  E-value=7e-06  Score=50.35  Aligned_cols=63  Identities=25%  Similarity=0.400  Sum_probs=43.5

Q ss_pred             EecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEEe------eEEEEeecccCCC
Q psy3045          26 KKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQVS------GTLIIKEAKVEDS   80 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~~------~~l~i~~~~~~d~   80 (267)
                      .+++|+++.|.|.+.+       +.|++...+...            ........|+....      ..|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4678999999999987       789886333211            11122334544321      2699999999999


Q ss_pred             eeEEEEEE
Q psy3045          81 GKYLCVVN   88 (267)
Q Consensus        81 G~Y~C~~~   88 (267)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4e-06  Score=51.94  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee----ccccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK----VAVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .+|.+.+.+  +...-..++.++|.|.+.+       |.|++++......    ......++.....+.|.|..-.+...
T Consensus         4 ~~P~V~l~~--ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1q0xl2           4 SSPTVTLFP--PSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERH   81 (102)
T ss_dssp             BCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTC
T ss_pred             CCCEEEEEC--CCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCC
Confidence            456666554  2222224678999999999       9999964322111    11112233344556788877776777


Q ss_pred             eeEEEEEEcCC
Q psy3045          81 GKYLCVVNNSV   91 (267)
Q Consensus        81 G~Y~C~~~~~~   91 (267)
                      ..|+|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1q0xl2          82 SSYSCQVTHEG   92 (102)
T ss_dssp             CEEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            89999999864

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.09  E-value=8e-06  Score=49.71  Aligned_cols=55  Identities=16%  Similarity=0.387  Sum_probs=39.7

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCc--cC------C----------------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGK--PV------P----------------DHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~--~~------~----------------~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      |++++|.|.........+.||+...  ..      .                ......|.|.++..+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            6788999987666666788987321  11      0                012357999999999999999988654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.09  E-value=1.2e-05  Score=50.81  Aligned_cols=67  Identities=24%  Similarity=0.380  Sum_probs=46.1

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++..++...             ........|+...  +    ..|.+.+++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            457889999999999998       888886333211             1111233444432  1    3588999999


Q ss_pred             CCCeeEEEEEEcC
Q psy3045          78 EDSGKYLCVVNNS   90 (267)
Q Consensus        78 ~d~G~Y~C~~~~~   90 (267)
                      +|++.|.|.....
T Consensus        88 eDtAvYYCAr~~~  100 (124)
T d1zvya1          88 EDTAIYTCGATRK  100 (124)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeeccc
Confidence            9999999987543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.09  E-value=9.9e-06  Score=51.09  Aligned_cols=60  Identities=15%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             eEEEecCCCEEEEeEeCCC--CCceEEEEECCccCC-----------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGN--PVKTISWMKDGKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~~~~-----------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      ...+.+|++++|.|...+.  ....+.||+...--.                       ..+...|.|.++..+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            4588899999999997654  345789998432110                       012467999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.2e-06  Score=51.54  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=42.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee---ccccCCceEEEEeeEEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---VAVPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      .||.+.+..     ....|+.++|.|.+.+       +.|++++......   ......+......+.|.   +...+..
T Consensus         2 ~PP~V~v~~-----~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~---~~~~~~~   73 (94)
T d1t7va1           2 DPPSVVVTS-----HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVA---VPPQDTA   73 (94)
T ss_dssp             BCCEEEEEE-----EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEE---ECTTCCS
T ss_pred             cCCEeEEec-----cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeE---eCCCCCC
Confidence            457666543     2235889999999999       9999974322111   00111122222223333   4556667


Q ss_pred             eEEEEEEcCCCc
Q psy3045          82 KYLCVVNNSVGG   93 (267)
Q Consensus        82 ~Y~C~~~~~~~~   93 (267)
                      .|+|.+.+..-.
T Consensus        74 ~ytC~V~H~sl~   85 (94)
T d1t7va1          74 PYSCHVQHSSLA   85 (94)
T ss_dssp             CEEEEEEETTCS
T ss_pred             EEEEEEEECCCC
Confidence            899999986543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=1.4e-05  Score=49.47  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...  +    ..|.+.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            5678999999999999998       788885333211             1111223444432  1    268899999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (116)
T d1mjuh1          88 SDDSAVYYCANK   99 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEccc
Confidence            999999999754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.9e-06  Score=53.63  Aligned_cols=79  Identities=13%  Similarity=0.152  Sum_probs=46.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      ||.+.+...........+.+++|.|.+.+       +.|++++........   ....+......+.|.|..-.+.....
T Consensus         4 pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~   83 (104)
T d1o0va1           4 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   83 (104)
T ss_dssp             CCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCE
Confidence            45554433212223345678999999998       999997443221111   11112222344567777666666778


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |+|.+.+..
T Consensus        84 ytC~V~H~~   92 (104)
T d1o0va1          84 YTCQVTYQG   92 (104)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999874

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.08  E-value=9.2e-06  Score=51.23  Aligned_cols=63  Identities=19%  Similarity=0.352  Sum_probs=45.4

Q ss_pred             CceEEEecCCCEEEEeEeCCCC---CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      |....+.+|++++|.|...+..   ...+.||+..  ..+.                     ..+...|.|..++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            3456889999999999976542   3358999843  1110                     013467999999999999


Q ss_pred             EEEEEEEcC
Q psy3045         195 MYQCVIRNE  203 (267)
Q Consensus       195 ~y~C~~~~~  203 (267)
                      .|.|.+.+.
T Consensus        87 ~YyCa~~~~   95 (112)
T d1lgva1          87 DYYCSSYDG   95 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecC
Confidence            999987654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.2e-06  Score=52.06  Aligned_cols=75  Identities=17%  Similarity=0.091  Sum_probs=43.7

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcce---eccccCCceEEEEeeEEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR---KVAVPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      .||.+.+.+.  . .+..|+.++|.|.+.+       +.|.+++.....   .......+......+.|.+   ..++.+
T Consensus         4 ~~P~V~v~~~--~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~   77 (100)
T d1k5nb_           4 RTPKIQVYSR--H-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF---TPTEKD   77 (100)
T ss_dssp             BCCEEEEEES--S-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---CCCSSC
T ss_pred             CCCeeEEEcC--C-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEE---CCCCCC
Confidence            4566655431  1 2467899999999999       899997443211   1111111222222233433   456777


Q ss_pred             eEEEEEEcCCC
Q psy3045          82 KYLCVVNNSVG   92 (267)
Q Consensus        82 ~Y~C~~~~~~~   92 (267)
                      .|+|.+.+...
T Consensus        78 ~ytC~V~H~sl   88 (100)
T d1k5nb_          78 EYACRVNHVTL   88 (100)
T ss_dssp             CEEEEEECTTC
T ss_pred             EEEEEEEeCCC
Confidence            99999998643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=7.7e-06  Score=51.91  Aligned_cols=64  Identities=19%  Similarity=0.364  Sum_probs=45.5

Q ss_pred             CCceEEEecCCCEEEEeEeCC-CCCceEEEEECC--ccCC--------C----------------CCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDG--KPVP--------D----------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~--~~~~--------~----------------~~~~~l~i~~~~~~d  192 (267)
                      .+....+.+|++|+|.|.... .....+.||+..  ..+.        .                .....|.|.+++.+|
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED   84 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccc
Confidence            345568999999999998653 334568899832  1110        0                012569999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (115)
T d1fo0a_          85 SAVYFCAMRGD   95 (115)
T ss_dssp             CEEEEEEEECC
T ss_pred             cccccceeecC
Confidence            99999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.07  E-value=1.4e-05  Score=49.85  Aligned_cols=67  Identities=22%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEEe------eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+....             .......|+....      ..|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            4678899999999999987       8898864433211             1112334544321      258999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (117)
T d1um5h1          87 SEDSAVYYCARSS   99 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecc
Confidence            9999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.07  E-value=1.8e-05  Score=49.76  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEEe------eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      -...+++|+++.|.|.+.+       +.|++...+....             .......|+....      ..|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~   87 (121)
T d1ol0a_           8 GGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR   87 (121)
T ss_dssp             ECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc
Confidence            3467899999999999987       7898864332211             1112233443321      269999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1ol0a_          88 AEDTAVYYCAREP  100 (121)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccceEEEEEEec
Confidence            9999999998653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.06  E-value=9.3e-06  Score=51.09  Aligned_cols=62  Identities=13%  Similarity=0.264  Sum_probs=44.9

Q ss_pred             ceEEEecCCCEEEEeEeCCC--CCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      +...+.+|++++|.|...+.  ....+.||+..  ..+.                     ..+...|.|.+++.+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            35688999999999987643  24469999742  1110                     01236799999999999999


Q ss_pred             EEEEEcC
Q psy3045         197 QCVIRNE  203 (267)
Q Consensus       197 ~C~~~~~  203 (267)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.06  E-value=2e-05  Score=49.50  Aligned_cols=66  Identities=21%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            457889999999999987       789886333211             1111223444432  1    2589999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999998654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.06  E-value=9.6e-06  Score=50.96  Aligned_cols=62  Identities=13%  Similarity=0.365  Sum_probs=44.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .|....+.+|++++|.|...+. ...+.|||..  +.+.                         ......|.|.++..+|
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            3556688899999999987643 4579999832  2110                         0123568899999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.06  E-value=2.1e-05  Score=49.45  Aligned_cols=67  Identities=18%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+....             .......|+...      ...|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            4567899999999999887       7898864433211             001123344332      1258999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1j05b_          88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             cCcceEEEeEeec
Confidence            9999999998653

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=5.2e-06  Score=51.90  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcce-----eccccCCceEEEEeeEEEEeecccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-----KVAVPLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      .+|.+.+.+.  ......+..++|.|.+.+       +.|++++.....     .......++.....+.|.|..-.+..
T Consensus         4 ~~P~V~l~~p--s~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1mjul2           4 AAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER   81 (107)
T ss_dssp             BCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred             cCCEEEEECC--CHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCC
Confidence            4566655542  222224678999999999       999986432211     11111233344455678887777666


Q ss_pred             CeeEEEEEEcCCCc
Q psy3045          80 SGKYLCVVNNSVGG   93 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~   93 (267)
                      ...|+|.+.+....
T Consensus        82 g~~ytC~V~H~~~~   95 (107)
T d1mjul2          82 HNSYTCEATHKTST   95 (107)
T ss_dssp             CCEEEEEEECTTCS
T ss_pred             CCEEEEEEEECCCC
Confidence            77899999986544

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.05  E-value=9.5e-06  Score=49.81  Aligned_cols=60  Identities=22%  Similarity=0.505  Sum_probs=41.1

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CCCe---EEeccCCCCCCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~~~---l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      +..|+.++|.|.+.|+ | ...++|++||..+..+         .+.+   .....+..++.+.|+|.+.|..-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCC
Confidence            4557889999999987 4 5699999999887532         1111   11122334566789999999754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.05  E-value=6.4e-06  Score=51.83  Aligned_cols=62  Identities=24%  Similarity=0.552  Sum_probs=44.1

Q ss_pred             CceEEEecCCCEEEEeEeCCC----CCceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN----PVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~----p~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++++|.|.....    ....+.||+.  |+.+.                     ......|.|.++..+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            455578899999999986432    2335999984  32221                     11346799999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      |.|.|.+.+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999997653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.05  E-value=8.7e-06  Score=50.57  Aligned_cols=61  Identities=20%  Similarity=0.397  Sum_probs=43.5

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      .|....+.+|++++|.|..... ...+.||+...  ...                     ......|.|.++..+|+|.|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            3555688999999999986543 33578998431  110                     01235799999999999999


Q ss_pred             EEEEE
Q psy3045         197 QCVIR  201 (267)
Q Consensus       197 ~C~~~  201 (267)
                      .|...
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.05  E-value=1.1e-05  Score=50.84  Aligned_cols=61  Identities=18%  Similarity=0.390  Sum_probs=43.7

Q ss_pred             CCceEEEecCCCEEEEeEeCCC-----CCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGN-----PVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~  191 (267)
                      .+....+.+|++++|.|..++.     ....+.||+..  ....                     ......|.|.++..+
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~   86 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE   86 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc
Confidence            3555688899999999987653     24468999742  2211                     012357999999999


Q ss_pred             CCeEEEEEE
Q psy3045         192 DKGMYQCVI  200 (267)
Q Consensus       192 d~g~y~C~~  200 (267)
                      |++.|.|..
T Consensus        87 DsAvYyCa~   95 (112)
T d1mjul1          87 DVGVYYCLQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEEe
Confidence            999999953

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.05  E-value=1.6e-05  Score=49.27  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=44.2

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            457889999999999987       788886433221             1111223444332  2    2599999999


Q ss_pred             CCCeeEEEEE
Q psy3045          78 EDSGKYLCVV   87 (267)
Q Consensus        78 ~d~G~Y~C~~   87 (267)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999974

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2.9e-06  Score=52.25  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=42.9

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee---ccccCCceEEEEeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---VAVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +|.+.+.+. .  ....|+.++|.|.+.+       ++|++++......   ......+......+.|.+   ...+.+.
T Consensus         4 ~P~V~v~~~-~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~   77 (99)
T d1lk2b_           4 TPQIQVYSR-H--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDT   77 (99)
T ss_dssp             CCEEEEEES-S--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCC
T ss_pred             CCEEEEEcC-C--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe---cCcCCCE
Confidence            566655431 1  2356888999999999       9999974422111   111111222222334444   4556778


Q ss_pred             EEEEEEcCCC
Q psy3045          83 YLCVVNNSVG   92 (267)
Q Consensus        83 Y~C~~~~~~~   92 (267)
                      |+|.+.+..-
T Consensus        78 ytC~V~H~sl   87 (99)
T d1lk2b_          78 YACRVKHDSM   87 (99)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=1.9e-05  Score=49.78  Aligned_cols=61  Identities=15%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC--------------------------CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP--------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~--------------------------~~~~~~l~i~~~~~~d  192 (267)
                      |....+.+|++++|.|...+ ....+.||+..  +.+.                          ..+...|.|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            45557889999999998543 34579999832  1110                          0123579999999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.03  E-value=6.1e-06  Score=51.89  Aligned_cols=63  Identities=13%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCeE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g~  195 (267)
                      +....+.+|++++|.|.........+.||+..  +.+.                       ......|.|.++..+|+|.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~   86 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAV   86 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcc
Confidence            45558889999999998655444579999832  2110                       1134679999999999999


Q ss_pred             EEEEEEcC
Q psy3045         196 YQCVIRNE  203 (267)
Q Consensus       196 y~C~~~~~  203 (267)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (110)
T d1ac6a_          87 YYCALSGG   94 (110)
T ss_dssp             EEEEEEET
T ss_pred             cceeecCC
Confidence            99987653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.5e-05  Score=50.09  Aligned_cols=61  Identities=20%  Similarity=0.506  Sum_probs=44.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC--------------------------CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP--------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~--------------------------~~~~~~l~i~~~~~~d  192 (267)
                      |....+.+|++++|.|...+. ...+.||+.  |..+.                          ......|+|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            455688899999999985433 357899974  22110                          0123579999999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (111)
T d2esve1          85 SGVYFCASSQ   94 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEeeeC
Confidence            9999998654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.02  E-value=9.8e-06  Score=51.01  Aligned_cols=62  Identities=16%  Similarity=0.385  Sum_probs=44.5

Q ss_pred             CceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++++|.|...+..  ..-+.|++..  +.+.                       ..+...|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            3456889999999999977653  3358999843  1110                       01235799999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      |.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999997643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.02  E-value=2.2e-05  Score=49.80  Aligned_cols=68  Identities=19%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.+.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            4567899999999999997       888886443321             1111223454432  1    258899999


Q ss_pred             cCCCeeEEEEEEcC
Q psy3045          77 VEDSGKYLCVVNNS   90 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~   90 (267)
                      .+|++.|.|.....
T Consensus        87 ~eDtAvYyCAr~~~  100 (130)
T d1rhhb1          87 SDDTAVYYCARDFG  100 (130)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             CCCcEEEEEEeecC
Confidence            99999999987643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=4.9e-06  Score=50.44  Aligned_cols=56  Identities=18%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC-----CCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIR  201 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~  201 (267)
                      .+..|++|+|.|.... ....+.|+|+|....     ......+.|.+++.+|+|.|+|...
T Consensus        14 ~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          14 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             cccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            6888999999998643 456889999876532     1245679999999999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.02  E-value=2.9e-05  Score=48.83  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEE--Ee----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQ--VS----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~--~~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++..++...             ........|+..  ++    ..|.+.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            457889999999999998       888886333221             111123344433  21    3688999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999998653

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=50.92  Aligned_cols=62  Identities=15%  Similarity=0.385  Sum_probs=44.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-CceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      |....+.+|++++|.|...+.. ...+.||+.  |..+.                     ......|.|..+..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            3455788999999999876543 345899984  22221                     01235699999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.02  E-value=3.4e-05  Score=48.11  Aligned_cols=67  Identities=21%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             .....+..|+...  +    ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            4568899999999999987       888876433221             1111223343322  1    368899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (118)
T d1ct8b1          88 TEDSAIYYCARYR  100 (118)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEEeeec
Confidence            9999999997653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.02  E-value=2.2e-05  Score=49.12  Aligned_cols=66  Identities=23%  Similarity=0.387  Sum_probs=45.5

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.+.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            3567899999999999998       889886433221             1111223454332  1    258999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999764

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.02  E-value=2.8e-05  Score=49.01  Aligned_cols=66  Identities=23%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....             .......|+...  +    ..|.+.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            467899999999999987       8888864433211             111223444432  1    3589999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.02  E-value=9.3e-06  Score=51.04  Aligned_cols=62  Identities=21%  Similarity=0.486  Sum_probs=43.8

Q ss_pred             CceEEEecCCCEEEEeEeCCC-C---CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGN-P---VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~-p---~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++|+|.|..+.. .   ...+.||+..  ....                     ......|.|.++..+|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            455688999999999986542 1   2348999842  2210                     01235799999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      +.|.|.+.+
T Consensus        88 A~YyCa~~~   96 (111)
T d2gsia1          88 ATYYCSHIR   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEECC
Confidence            999997543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=5.3e-06  Score=52.81  Aligned_cols=62  Identities=21%  Similarity=0.404  Sum_probs=45.1

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEEE
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMYQ  197 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y~  197 (267)
                      |....+.+|++++|.|...+.-...+.||+...  ...                     ......|.|.+++.+|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            445578899999999997665455799998431  110                     012357999999999999999


Q ss_pred             EEEEc
Q psy3045         198 CVIRN  202 (267)
Q Consensus       198 C~~~~  202 (267)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            97653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.01  E-value=2e-05  Score=49.87  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=45.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            4567899999999999987       888876333211             1111233444332  1    258899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAR~~  100 (125)
T d1rihh1          88 SEDSAVYYCARES  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEeeeC
Confidence            9999999998654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.01  E-value=3.3e-05  Score=49.06  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEEe------eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQVS------GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~~------~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...             ........|+....      ..|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            457889999999999987       788876333211             11112334544321      3689999999


Q ss_pred             CCCeeEEEEEEcC
Q psy3045          78 EDSGKYLCVVNNS   90 (267)
Q Consensus        78 ~d~G~Y~C~~~~~   90 (267)
                      +|++.|+|.....
T Consensus        89 eDTAvYYCAr~~~  101 (135)
T d1ieha_          89 EDTAVYYCAKYSG  101 (135)
T ss_dssp             SSCEEEEEEEBSS
T ss_pred             ccceeeEEEEecC
Confidence            9999999986543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.01  E-value=2.7e-05  Score=49.28  Aligned_cols=67  Identities=21%  Similarity=0.345  Sum_probs=45.8

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++..++...             ........|+...  +    ..|.+.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            457889999999999998       788886433221             1111223444332  1    3589999999


Q ss_pred             CCCeeEEEEEEcC
Q psy3045          78 EDSGKYLCVVNNS   90 (267)
Q Consensus        78 ~d~G~Y~C~~~~~   90 (267)
                      +|++.|.|.....
T Consensus        89 eDTA~YYCAr~~~  101 (127)
T d2fb4h1          89 EDTGVYFCARDGG  101 (127)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             cceeEEEEEEecC
Confidence            9999999986543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.00  E-value=2.1e-05  Score=49.34  Aligned_cols=66  Identities=20%  Similarity=0.326  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee---------------ccccCCceEEEE--e----eEEEEeec
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---------------VAVPLNDRVKQV--S----GTLIIKEA   75 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---------------~~~~~~~~~~~~--~----~~l~i~~~   75 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....               .......|+...  +    ..|.+.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            457889999999999988       8898864332211               111223444432  1    25899999


Q ss_pred             ccCCCeeEEEEEEc
Q psy3045          76 KVEDSGKYLCVVNN   89 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~   89 (267)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCar~~  102 (122)
T d1q9rb1          89 RAEDSATYYCARDH  102 (122)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccCcceEEEEEecC
Confidence            99999999998744

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=2.1e-05  Score=49.14  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      -...+++|+++.|.|.+.+       +.|++...+....             .......|+...  +    ..|.+.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            3567889999999999987       8898864433211             111123344332  1    268999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1eapb1          88 SEDSAVYFCKRS   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEEEe
Confidence            999999999753

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.00  E-value=2.7e-05  Score=49.52  Aligned_cols=66  Identities=27%  Similarity=0.419  Sum_probs=45.4

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceec------------------cccCCceEEEE------eeEEEE
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV------------------AVPLNDRVKQV------SGTLII   72 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~------------------~~~~~~~~~~~------~~~l~i   72 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....-                  ......|+...      ...|.|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            457889999999999987       88998644332110                  11122344332      136899


Q ss_pred             eecccCCCeeEEEEEEc
Q psy3045          73 KEAKVEDSGKYLCVVNN   89 (267)
Q Consensus        73 ~~~~~~d~G~Y~C~~~~   89 (267)
                      .+++.+|++.|.|....
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999998754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.00  E-value=2.2e-05  Score=49.61  Aligned_cols=66  Identities=21%  Similarity=0.363  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEEe------eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQVS------GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~~------~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|.+...+...             .....+..|+....      ..|.+.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            456889999999999987       788876333221             11112334544321      3589999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999998754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.99  E-value=3.2e-05  Score=48.31  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee---------------ccccCCceEEEE--e----eEEEEeec
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---------------VAVPLNDRVKQV--S----GTLIIKEA   75 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---------------~~~~~~~~~~~~--~----~~l~i~~~   75 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....               .......|+...  +    ..|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            456889999999999987       8898864433211               111223454432  1    36899999


Q ss_pred             ccCCCeeEEEEEEc
Q psy3045          76 KVEDSGKYLCVVNN   89 (267)
Q Consensus        76 ~~~d~G~Y~C~~~~   89 (267)
                      +.+|++.|.|....
T Consensus        89 ~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          89 RAEDTGIYYCTGIY  102 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             cCCCceEEEeeEec
Confidence            99999999997654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.8e-06  Score=49.79  Aligned_cols=61  Identities=16%  Similarity=0.336  Sum_probs=41.8

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCCe---EEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPV---FRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~~---l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +..|+..+|.|.+.|+ | ...+.|.+||..+...        ..++   .....+..++.+.|+|.+.|..-.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   89 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS   89 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCS
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCCC
Confidence            3457889999999987 4 4589999999887532        1111   222233455667899999997543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=2.3e-05  Score=49.49  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...  +    ..|.+.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            4578899999999999998       788886433221             1111233444432  1    258899999


Q ss_pred             cCCCeeEEEEE
Q psy3045          77 VEDSGKYLCVV   87 (267)
Q Consensus        77 ~~d~G~Y~C~~   87 (267)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAR   98 (127)
T d1n0xh1          88 SADTAVYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            99999999975

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=1.7e-05  Score=50.09  Aligned_cols=62  Identities=15%  Similarity=0.418  Sum_probs=44.7

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCC-------------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP-------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~-------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++++|.|...+. ...+.||+.  ++.+.                         ......|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            445578899999999986543 357899983  22110                         01235799999999999


Q ss_pred             eEEEEEEEcC
Q psy3045         194 GMYQCVIRNE  203 (267)
Q Consensus       194 g~y~C~~~~~  203 (267)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999987653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=2.9e-05  Score=49.13  Aligned_cols=67  Identities=22%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...  +    ..|.+.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            3557899999999999998       788875332211             1112234454432  1    358899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999999754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=50.98  Aligned_cols=60  Identities=25%  Similarity=0.447  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEeEeCCC--CCceEEEEECCc--cCC--------------------------CCCCCeEEeccCCCCCCe
Q psy3045         145 TIDFGRPAQFTCKYEGN--PVKTISWMKDGK--PVP--------------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~--~~~--------------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      .+.+|++++|.|..++.  ....+.|+|...  ...                          ......|+|.+++.+|+|
T Consensus        10 ~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg   89 (113)
T d1smoa_          10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSG   89 (113)
T ss_dssp             ECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCc
Confidence            67789999999986532  345788998421  110                          001245889999999999


Q ss_pred             EEEEEEEcCC
Q psy3045         195 MYQCVIRNEQ  204 (267)
Q Consensus       195 ~y~C~~~~~~  204 (267)
                      .|.|.+....
T Consensus        90 ~Y~Cav~~~~   99 (113)
T d1smoa_          90 LYQCVIYQPP   99 (113)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEECCC
Confidence            9999986543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.99  E-value=3e-05  Score=48.79  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=45.7

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~~   77 (267)
                      ...+.+|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.|.+++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            457899999999999988       888886433221             1111233444432  1    3689999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999998653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.99  E-value=2.4e-05  Score=49.33  Aligned_cols=65  Identities=17%  Similarity=0.291  Sum_probs=43.6

Q ss_pred             eEEecCCCeEEEEEEecc---------eeeeecccCccee------------ccccCCceEEEEe------eEEEEeecc
Q psy3045          24 RFKKPGGESFALLCEAQE---------NMWFKFIEGSSRK------------VAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~------------~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      ...+.+|++++|.|.+.+         +.|++...+...+            .......|+....      ..|.|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            456889999999999775         5798863332211            1111234443321      359999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999864

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.98  E-value=2.6e-05  Score=49.61  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             EEecCCCeEEEEEEecc---------eeeeecccCcce------------eccccCCceEEEE------eeEEEEeeccc
Q psy3045          25 FKKPGGESFALLCEAQE---------NMWFKFIEGSSR------------KVAVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~------------~~~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ..+.+|++++|.|.+.+         +.|++...+...            ........|+...      ...|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            47889999999999775         568875322211            1111223454432      13699999999


Q ss_pred             CCCeeEEEEEE
Q psy3045          78 EDSGKYLCVVN   88 (267)
Q Consensus        78 ~d~G~Y~C~~~   88 (267)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999864

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.98  E-value=3.6e-05  Score=48.01  Aligned_cols=67  Identities=19%  Similarity=0.326  Sum_probs=46.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...      ...|.+.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            3567899999999999998       888876333211             1112234444332      1368899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (120)
T d1ad9b1          88 SEDTAFYFCAREK  100 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCcceEEEEEEcC
Confidence            9999999998653

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.98  E-value=2.3e-05  Score=48.72  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++..++...             ........|+...  +    ..|.+.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            3567889999999999998       788885333221             1111233454432  1    258899999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jnhb1          88 SEDSAVYSCSRG   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-05  Score=48.85  Aligned_cols=59  Identities=14%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             ecCCCEEEEeEeCC-CCCceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         147 DFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       147 ~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ..++.++|.|.+.| +|.+.+.|++|+..+...        ..      +.|.+.   ..+...|+|.+.+..-...
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCc
Confidence            34677899999987 588899999999877532        11      233333   3456799999999865444

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=2.1e-05  Score=49.86  Aligned_cols=67  Identities=19%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+...             ........|+...  +    ..|.+.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            4567899999999999987       888886333211             1111223444332  1    248899999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        88 ~eDtA~YYCAr~~  100 (130)
T d1rzga1          88 SEDTAVFYCASPY  100 (130)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             CCccEEEEEEEec
Confidence            9999999998643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.2e-06  Score=52.39  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCccee----ccccCCceEEEEeeEEEEeecccCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK----VAVPLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      ..+|.+.+.+.  ...-..++.++|.|.+.+       +.|++++......    ......++.....+.|.|....+..
T Consensus         3 ~~~P~V~~~~p--s~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~   80 (102)
T d1rzfl2           3 KAAPSVTLFPP--SSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKS   80 (102)
T ss_dssp             CBCCEEEEECC--CHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHH
T ss_pred             CCCCEEEEECC--CHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCC
Confidence            34676665542  212224677999999999       9999974322211    1111223334455677777666655


Q ss_pred             CeeEEEEEEcCC
Q psy3045          80 SGKYLCVVNNSV   91 (267)
Q Consensus        80 ~G~Y~C~~~~~~   91 (267)
                      ...|+|.+.+..
T Consensus        81 ~~~ytC~V~H~~   92 (102)
T d1rzfl2          81 HRSYSCQVTHEG   92 (102)
T ss_dssp             SSCEEEEEEETT
T ss_pred             CCEEEEEEEECC
Confidence            668999999864

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.97  E-value=1.8e-05  Score=48.62  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcce----eccccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR----KVAVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .+|.+.+.+.  . .+..|+.++|.|.+.+       +.|++++.....    .......+......+.|.+.   ..+.
T Consensus         4 v~P~V~v~~~--~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~   77 (101)
T d1fnga1           4 VAPEVTVLSR--S-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTD   77 (101)
T ss_dssp             BCCEEEEEES--S-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTT
T ss_pred             cCCeEEEeCC--C-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCC
Confidence            4677766542  1 2456788999999999       999997432211    11111222223334455554   3455


Q ss_pred             eeEEEEEEcCC
Q psy3045          81 GKYLCVVNNSV   91 (267)
Q Consensus        81 G~Y~C~~~~~~   91 (267)
                      ..|+|.+.+..
T Consensus        78 ~~ytC~V~H~s   88 (101)
T d1fnga1          78 DFYDCEVDHWG   88 (101)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEEECC
Confidence            68999999864

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.96  E-value=1.8e-05  Score=49.58  Aligned_cols=66  Identities=26%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEEe------eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQVS------GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~~------~~l~i~~~~   76 (267)
                      -...+++|+++.|.|.+.+       +.|.+...+...             ........|+....      ..|.+.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            3567899999999999987       788886433211             11111233443321      258899999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999864

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=3.3e-05  Score=48.69  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...  +    ..|.+.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            4568899999999999998       888885333221             1112234454432  1    368999999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        87 ~eDTAvYYCAr~   98 (126)
T d1lmka1          87 SEDSAVYYCARG   98 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999753

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.3e-05  Score=49.24  Aligned_cols=60  Identities=18%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCC---eEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEP---VFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~---~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..|+.++|.|.+.|+ | ...++|.+||..+...        .+.   ......+..++.+.|+|.+.|..-.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCC
Confidence            357889999999986 4 4589999999877532        111   1122233455667899999997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.95  E-value=3.6e-05  Score=47.92  Aligned_cols=67  Identities=22%  Similarity=0.274  Sum_probs=45.5

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcce------------eccccCCceEEEE--e----eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSR------------KVAVPLNDRVKQV--S----GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~------------~~~~~~~~~~~~~--~----~~l~i~~~~~~   78 (267)
                      ...+++|+++.|.|.+.+       +.|++...+...            ........|+...  +    ..|.|.+++.+
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~e   88 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSE   88 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCC
Confidence            457889999999999998       889886433221            1111223343322  1    36899999999


Q ss_pred             CCeeEEEEEEcC
Q psy3045          79 DSGKYLCVVNNS   90 (267)
Q Consensus        79 d~G~Y~C~~~~~   90 (267)
                      |++.|.|.....
T Consensus        89 DtA~YyCAr~~~  100 (118)
T d1lo4h1          89 DTAIYYCARGTS  100 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEecccCC
Confidence            999999986543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.95  E-value=2e-05  Score=49.70  Aligned_cols=62  Identities=19%  Similarity=0.427  Sum_probs=44.1

Q ss_pred             CCceEEEecCCCEEEEeEeCCC------CCceEEEEECC--ccCC---------------------CCCCCeEEeccCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGN------PVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRK  190 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~------p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~  190 (267)
                      .|....+.+|++++|.|...+.      ....+.||+..  ..+.                     ......|.|.+++.
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            3556688999999999986542      12358999842  2111                     01235799999999


Q ss_pred             CCCeEEEEEEE
Q psy3045         191 EDKGMYQCVIR  201 (267)
Q Consensus       191 ~d~g~y~C~~~  201 (267)
                      +|+|.|.|.+.
T Consensus        87 ~Dsa~YyCA~~   97 (113)
T d1q9ra1          87 EDLAVYYCKQS   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCeEEEeccc
Confidence            99999999764

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.3e-05  Score=47.87  Aligned_cols=63  Identities=22%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE------eeEEEEeecccCCCee
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV------SGTLIIKEAKVEDSGK   82 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~   82 (267)
                      +|++++|.|.+.+       +.|++...+...             ........|+...      ...|.+.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            5899999999998       889886433221             1112233444322      2369999999999999


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999865443

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.7e-05  Score=50.38  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             CceEEEecCCCEEEEeEeCC---CC---CceEEEEECCccCC--------------------------CCCCCeEEeccC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEG---NP---VKTISWMKDGKPVP--------------------------DHNEPVFRIDSV  188 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~---~p---~~~~~W~~~~~~~~--------------------------~~~~~~l~i~~~  188 (267)
                      |..+.+.+|+.|.|.|....   .+   ...+.|++......                          .....+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            34557889999999998641   11   23566777432211                          012457999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy3045         189 RKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       189 ~~~d~g~y~C~~~~~~  204 (267)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.94  E-value=3.2e-05  Score=48.50  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE--e----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+..++...             ........|+...  +    ..|.+.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            4567889999999999998       788886333221             1111223444332  1    358899999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999864

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.94  E-value=2.1e-05  Score=49.54  Aligned_cols=62  Identities=19%  Similarity=0.444  Sum_probs=44.2

Q ss_pred             CCceEEEecCCCEEEEeEeCCC-----CCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGN-----PVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~  191 (267)
                      .|....+.+|++++|.|..++.     ....+.||+..  ....                     ..+...|.|.++..+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            3455688999999999997543     23468999842  2110                     012358999999999


Q ss_pred             CCeEEEEEEE
Q psy3045         192 DKGMYQCVIR  201 (267)
Q Consensus       192 d~g~y~C~~~  201 (267)
                      |+|.|.|...
T Consensus        88 DsavYyCa~~   97 (113)
T d1n4xl_          88 DLGIYYCFQG   97 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEEEEEC
Confidence            9999999643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.93  E-value=4e-05  Score=48.48  Aligned_cols=67  Identities=24%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEE--Ee----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQ--VS----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~--~~----~~l~i~~~~   76 (267)
                      -...+++|+++.|.|.+.+       +.|++...+...             ........|+..  ++    ..|.|.+++
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~   86 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK   86 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence            3567899999999999987       889886433221             111112334432  11    248999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        87 ~eDTAvYYCAr~~   99 (126)
T d1rjca1          87 PEDTAMYYCAADT   99 (126)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceeEEEeec
Confidence            9999999998653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.93  E-value=3e-05  Score=47.45  Aligned_cols=58  Identities=12%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC--------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+..|++|+|.|.... +...+.|+|+|.....        .....+.|..+...|+|.|+|.....
T Consensus        16 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          16 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            7888999999998653 4568999999865431        12245677788888999999987644

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.92  E-value=1.5e-05  Score=50.12  Aligned_cols=60  Identities=23%  Similarity=0.527  Sum_probs=42.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCC-----CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d  192 (267)
                      |....+.+|++++|.|..++..     ..-+.||+..  ..+.                     .++...|.|.++..+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            4556889999999999865332     3458899742  1110                     0123579999999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      +|.|.|..
T Consensus        88 sAvYYC~~   95 (112)
T d1ncwl1          88 LGVYYCWQ   95 (112)
T ss_dssp             CEEEEEEE
T ss_pred             CEeEEEEc
Confidence            99999954

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.92  E-value=2.6e-05  Score=49.90  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=44.6

Q ss_pred             eEEecCCCeEEEEEEecc---------eeeeecccCcce------------eccccCCceEEE--Ee----eEEEEeecc
Q psy3045          24 RFKKPGGESFALLCEAQE---------NMWFKFIEGSSR------------KVAVPLNDRVKQ--VS----GTLIIKEAK   76 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~------------~~~~~~~~~~~~--~~----~~l~i~~~~   76 (267)
                      ...+.+|++++|.|.+.+         +.|++...+...            ........|+..  ++    ..|.|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            357889999999999775         679886332211            111122345433  21    359999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (132)
T d1tjgh1          89 PVDTATYFCAHRR  101 (132)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEEEec
Confidence            9999999998764

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.91  E-value=1.6e-05  Score=49.63  Aligned_cols=80  Identities=10%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             cCCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc---cCCceEEEEeeEEEEeecccCCC
Q psy3045          11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV---PLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      ..+|+..+.+. ....+..+..++|.|.+.+       +.|++++.........   ...+......+.|.+..-.+  .
T Consensus         6 ~~~P~v~i~~P-s~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~   82 (107)
T d1hxmb2           6 DVSPKPTIFLP-SIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--D   82 (107)
T ss_dssp             CCSCBCCCCCC-CGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--G
T ss_pred             CCCCeEEEECC-CHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--C
Confidence            44677666652 3344677889999999999       9999975433221111   11122222344566655443  2


Q ss_pred             eeEEEEEEcCCCc
Q psy3045          81 GKYLCVVNNSVGG   93 (267)
Q Consensus        81 G~Y~C~~~~~~~~   93 (267)
                      ..|+|.+.+....
T Consensus        83 ~~ytC~V~H~s~~   95 (107)
T d1hxmb2          83 KEHRCIVRHENNK   95 (107)
T ss_dssp             SCEEEEEEETTSG
T ss_pred             CeEEEEEEECCCC
Confidence            3699999986554

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=8.7e-06  Score=47.68  Aligned_cols=53  Identities=23%  Similarity=0.651  Sum_probs=43.6

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCC-CCCeEEEEEEEc
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK-EDKGMYQCVIRN  202 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~  202 (267)
                      .|.+|+|+|...+.  ..|.|-+|+..++..+...|.+..... +++|.|.|....
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCCCCCcEEEEccccccccCcceEEecCC
Confidence            39999999986643  469999999999888788999998764 899999997443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=3.6e-05  Score=48.42  Aligned_cols=61  Identities=18%  Similarity=0.396  Sum_probs=43.9

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-------------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++++|.|..... ...+.||+..  +.+.                         ......|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            444578899999999986543 4579999832  1110                         01235799999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      |.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998764

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.91  E-value=4.2e-05  Score=47.74  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             eEEecCCCeEEEEEEecc--------eeeeecccCcc------------eeccccCCceEEEEe------eEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE--------NMWFKFIEGSS------------RKVAVPLNDRVKQVS------GTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~------------~~~~~~~~~~~~~~~------~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+        +.|.+...+..            .........|+....      ..|.+.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            457889999999999987        67887533321            111112334444321      3589999999


Q ss_pred             CCCeeEEEEEEc
Q psy3045          78 EDSGKYLCVVNN   89 (267)
Q Consensus        78 ~d~G~Y~C~~~~   89 (267)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1ncwh1          89 EDTATYYCAGLL  100 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCceEEEEeEec
Confidence            999999997654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=3e-05  Score=48.79  Aligned_cols=66  Identities=20%  Similarity=0.300  Sum_probs=45.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCccee-------------ccccCCceEEE--Ee----eEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK-------------VAVPLNDRVKQ--VS----GTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~-------------~~~~~~~~~~~--~~----~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|++...+....             .......|+..  ++    ..|.+.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            3567899999999999998       7888853332211             11122344432  21    368899999


Q ss_pred             cCCCeeEEEEEE
Q psy3045          77 VEDSGKYLCVVN   88 (267)
Q Consensus        77 ~~d~G~Y~C~~~   88 (267)
                      .+|++.|.|...
T Consensus        88 ~eDTA~YYCAR~   99 (124)
T d2b1hh1          88 PSDTALYYCARL   99 (124)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeec
Confidence            999999999654

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.90  E-value=4.5e-05  Score=48.48  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCccee---------------ccccCCceEEEE--e----eEEEEeec
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRK---------------VAVPLNDRVKQV--S----GTLIIKEA   75 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~---------------~~~~~~~~~~~~--~----~~l~i~~~   75 (267)
                      ...+++|++++|.|.+.+       +.|++...+....               ....+..|+...  +    ..|.+.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            457899999999999987       8898864443211               111233444432  1    35899999


Q ss_pred             ccCCCeeEEEEEE
Q psy3045          76 KVEDSGKYLCVVN   88 (267)
Q Consensus        76 ~~~d~G~Y~C~~~   88 (267)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999875

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=2.6e-05  Score=46.92  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=42.8

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec--cccCCceEEEEeeEEEEeecccCCCee
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV--AVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      .||.+.+..  +   ...+..++|.|.+.+       ++|++++.......  .....++.....+.|.+.   ..+...
T Consensus         2 ~PP~V~v~~--~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~   73 (91)
T d3frua1           2 EPPSMRLKA--R---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHH   73 (91)
T ss_dssp             BCCEEEEEE--E---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGG
T ss_pred             CCCEEEEEe--c---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCE
Confidence            467666533  1   234568999999999       99999743221111  111122222333455553   455678


Q ss_pred             EEEEEEcCCCc
Q psy3045          83 YLCVVNNSVGG   93 (267)
Q Consensus        83 Y~C~~~~~~~~   93 (267)
                      |+|.+.+..-.
T Consensus        74 ytC~V~H~sL~   84 (91)
T d3frua1          74 YQCQVEHEGLA   84 (91)
T ss_dssp             EEEEEECTTSS
T ss_pred             EEEEEEeCCCC
Confidence            99999986533

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.90  E-value=2.9e-05  Score=47.38  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=40.8

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------CCe---EEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------EPV---FRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------~~~---l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ...++.++|.|.+.++ | ...++|.+||..+..+.         +.+   .....+..++...|+|.+.|....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            3446789999999987 4 66999999998774321         111   111223445556899999997644

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.89  E-value=2.8e-05  Score=48.58  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=45.0

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce---------------eccccCCceEEEE------eeEEEEee
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR---------------KVAVPLNDRVKQV------SGTLIIKE   74 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~---------------~~~~~~~~~~~~~------~~~l~i~~   74 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...               ........|+...      ...|.+.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            3568999999999999998       789886433221               0111122333221      23589999


Q ss_pred             cccCCCeeEEEEEE
Q psy3045          75 AKVEDSGKYLCVVN   88 (267)
Q Consensus        75 ~~~~d~G~Y~C~~~   88 (267)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999764

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.89  E-value=2.8e-05  Score=48.81  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=44.2

Q ss_pred             eEEecCCCeEEEEEEecc---------eeeeecccCcceec------------cccCCceEEEE--e----eEEEEeecc
Q psy3045          24 RFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKV------------AVPLNDRVKQV--S----GTLIIKEAK   76 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~------------~~~~~~~~~~~--~----~~l~i~~~~   76 (267)
                      ...+.+|++++|.|.+.+         +.|++...+....-            ......|+...  +    ..|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            457889999999999875         67988644332210            01122344321  1    358999999


Q ss_pred             cCCCeeEEEEEEc
Q psy3045          77 VEDSGKYLCVVNN   89 (267)
Q Consensus        77 ~~d~G~Y~C~~~~   89 (267)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (120)
T d1ai1h1          89 NEDTAMYYCSREN  101 (120)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccceeEEEEEecC
Confidence            9999999998643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=3.1e-05  Score=48.74  Aligned_cols=63  Identities=14%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC-------------------------CCCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP-------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~-------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      |....+.+|++++|.|..... ...+.||+...  .+.                         ......|.|..+..+|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            445578899999999986533 35789998432  110                         01235799999999999


Q ss_pred             eEEEEEEEcCC
Q psy3045         194 GMYQCVIRNEQ  204 (267)
Q Consensus       194 g~y~C~~~~~~  204 (267)
                      |.|.|.+....
T Consensus        84 a~YyCA~~~~~   94 (112)
T d2cdeb1          84 SQYLCASSENI   94 (112)
T ss_dssp             SEEEEEEECSS
T ss_pred             ccEEEEEecCC
Confidence            99999887543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.3e-05  Score=47.44  Aligned_cols=58  Identities=17%  Similarity=0.379  Sum_probs=39.1

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CCC---eEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NEP---VFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~~---~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .++.++|.|.+.|+ | ...++|++||..+...          ...   ......+...+...|+|.+.|..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            46779999999986 5 5599999999887421          111   112223344556689999999753

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.1e-05  Score=49.87  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCccee---ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRK---VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ..+.++|.|.+.+       +.|++++......   ......+......+.|.|..-.+.....|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4578999999999       9999964322111   1111223333455677777666666778999999864

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.87  E-value=4.6e-05  Score=48.48  Aligned_cols=63  Identities=25%  Similarity=0.554  Sum_probs=45.6

Q ss_pred             CceEEEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC--------------C---------CCCCeEEeccCCCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP--------------D---------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~--------------~---------~~~~~l~i~~~~~~d~  193 (267)
                      +....+.+|++++|.|...+..  ...+.||+.  |+.+.              .         .+...|.|.++..+|+
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Ds   87 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE   87 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCC
Confidence            4455788999999999987653  446999983  22111              0         1235799999999999


Q ss_pred             eEEEEEEEcC
Q psy3045         194 GMYQCVIRNE  203 (267)
Q Consensus       194 g~y~C~~~~~  203 (267)
                      |.|.|.....
T Consensus        88 a~YyCA~~~~   97 (120)
T d1hxma1          88 GSYYCACDTL   97 (120)
T ss_dssp             EEEEEEEECC
T ss_pred             ceeecCcccC
Confidence            9999987553

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.87  E-value=5.2e-05  Score=47.71  Aligned_cols=63  Identities=11%  Similarity=0.255  Sum_probs=44.6

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .|....+.+|++++|.|.... ....+.|||..  ..+.                         ......|.|.++..+|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            345557889999999998543 24578899832  1110                         0123679999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (113)
T d1j8he1          85 TSMYLCASSST   95 (113)
T ss_dssp             CEEEEEEEECT
T ss_pred             cccEEeeEccC
Confidence            99999998653

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1e-05  Score=50.10  Aligned_cols=64  Identities=13%  Similarity=0.142  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCccee---ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRK---VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG   92 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   92 (267)
                      .++.++|.|.+.+       +.|++++......   ......+......+.|.+..-.+.....|+|.+.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            4778999999999       9999974322111   11112223334456777776666666689999998643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.86  E-value=3.1e-05  Score=47.34  Aligned_cols=60  Identities=12%  Similarity=0.388  Sum_probs=39.0

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC---CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE---PVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      .++..+|.|.+.++ | ...+.|++||..+..+         ..   +.+....+..++...|+|.+.|..-..
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            36667899999986 4 4599999999877432         11   122233455667789999999976443

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.85  E-value=4.4e-05  Score=48.04  Aligned_cols=63  Identities=17%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             CCceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC-------------------------CCCCCeEEeccCCCCC
Q psy3045         140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP-------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~-------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .|....+.+|++++|.|..... ...+.||+...  .+.                         ......|.|.++..+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            3555688899999999986433 35799998431  110                         0113478999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      +|.|.|.+...
T Consensus        86 sa~YyCa~~~~   96 (113)
T d1nfdb1          86 SAMYFCASSLR   96 (113)
T ss_dssp             CEEECEEEESS
T ss_pred             ceeEEEEeecC
Confidence            99999987643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.3e-05  Score=48.51  Aligned_cols=62  Identities=21%  Similarity=0.402  Sum_probs=43.2

Q ss_pred             CceEEEecCCCEEEEeEeCCCC---CceEEEEECCc--cCC------------------------CCCCCeEEeccCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDGK--PVP------------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~~--~~~------------------------~~~~~~l~i~~~~~~  191 (267)
                      |....+.+|+.++|.|......   ...+.|+|...  ...                        ......|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            3445778899999999865332   22588998432  110                        012357999999999


Q ss_pred             CCeEEEEEEEc
Q psy3045         192 DKGMYQCVIRN  202 (267)
Q Consensus       192 d~g~y~C~~~~  202 (267)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.84  E-value=1.4e-05  Score=49.86  Aligned_cols=61  Identities=18%  Similarity=0.429  Sum_probs=43.6

Q ss_pred             ceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045         142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMYQC  198 (267)
Q Consensus       142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y~C  198 (267)
                      ....+.+|++++|.|.........+.||+..  ..+.                     ......|.|.+++.+|+|.|.|
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEE
Confidence            3457889999999998754444468899732  1110                     0123578999999999999999


Q ss_pred             EEEc
Q psy3045         199 VIRN  202 (267)
Q Consensus       199 ~~~~  202 (267)
                      .+..
T Consensus        87 A~~~   90 (108)
T d1nfde1          87 LSSY   90 (108)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            8764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.4e-06  Score=51.60  Aligned_cols=78  Identities=14%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc--------cCCceEEEEeeEEEEeeccc
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV--------PLNDRVKQVSGTLIIKEAKV   77 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~   77 (267)
                      +|.+.+.+. ....+..|+.++|.|.+.+       +.|++++.........        ...++.....+.|.|..-.+
T Consensus         4 ~P~V~~~~p-~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           4 RPEVHLLPP-PSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCEEEEECC-CTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECC-CHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            565554431 2334567899999999988       9999964322211110        11233344556777776666


Q ss_pred             CCCeeEEEEEEcCC
Q psy3045          78 EDSGKYLCVVNNSV   91 (267)
Q Consensus        78 ~d~G~Y~C~~~~~~   91 (267)
                      .....|+|.+.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            66779999998854

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.2e-05  Score=46.89  Aligned_cols=60  Identities=15%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CC---CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE---PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~---~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..|+.++|.|.+.|+ | ...+.|.+||..+...        ..   .......+...+...|+|.+.|..-.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            457889999999986 5 4599999999877532        11   11222233445556899999987543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.84  E-value=7.6e-05  Score=47.43  Aligned_cols=68  Identities=21%  Similarity=0.319  Sum_probs=46.1

Q ss_pred             eeEEecCCCeEEEEEEecc-------eeeeecccCcce-------------eccccCCceEEEE------eeEEEEeecc
Q psy3045          23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSR-------------KVAVPLNDRVKQV------SGTLIIKEAK   76 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~-------------~~~~~~~~~~~~~------~~~l~i~~~~   76 (267)
                      ....+++|+++.|.|.+.+       +.|.+...+...             ........|+...      ...|.+.+++
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            3567899999999999998       788875333211             1111233444432      1358899999


Q ss_pred             cCCCeeEEEEEEcC
Q psy3045          77 VEDSGKYLCVVNNS   90 (267)
Q Consensus        77 ~~d~G~Y~C~~~~~   90 (267)
                      .+|++.|.|.....
T Consensus        87 ~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          87 SDDTAVYYCASNSI  100 (133)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeeeccC
Confidence            99999999976543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=1.9e-05  Score=48.71  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             cCCCeEEEEEEecc-------eeeeecccCcceecc-ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          28 PGGESFALLCEAQE-------NMWFKFIEGSSRKVA-VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..++.++|.|.+.+       |.|.+++........ ....++.....+.|.|..-.+. .+.|+|.+.+....
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASS   90 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGT
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCC
Confidence            35789999999999       999765322111111 1112223334456777666553 57899999986543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.83  E-value=5.7e-05  Score=46.01  Aligned_cols=75  Identities=20%  Similarity=0.176  Sum_probs=43.8

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      ||.+.+.+   ......++.++|.|.+.+       +.|++++........    ....+......+.|.+   ..++..
T Consensus         3 PP~V~v~~---~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~   76 (98)
T d1hdmb1           3 PPSVQVAK---TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGD   76 (98)
T ss_dssp             CCEEEEEE---CCCCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTC
T ss_pred             CCEEEEEc---CCCccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCC
Confidence            56665543   123566788999999999       999997442221111    1111222223334544   455667


Q ss_pred             eEEEEEEcCCCc
Q psy3045          82 KYLCVVNNSVGG   93 (267)
Q Consensus        82 ~Y~C~~~~~~~~   93 (267)
                      .|+|.+.+....
T Consensus        77 ~ytC~V~H~sl~   88 (98)
T d1hdmb1          77 TYTCVVEHIGAP   88 (98)
T ss_dssp             CEEEEEECTTSS
T ss_pred             EEEEEEEeCCCC
Confidence            899999986543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=1.4e-05  Score=49.37  Aligned_cols=78  Identities=10%  Similarity=0.107  Sum_probs=46.7

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +|.+.+.+.  .......+.+.|.|.+.+       +.|++++........   ....++.....+.|.|..-.+.....
T Consensus         4 ~P~V~i~~p--~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~   81 (102)
T d1i1ca2           4 GPQVYTMAP--PKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT   81 (102)
T ss_dssp             CCEEEEECC--CGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECC--CHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCE
Confidence            455555442  112223578999999988       999997442221111   11122333445667787776666778


Q ss_pred             EEEEEEcCCC
Q psy3045          83 YLCVVNNSVG   92 (267)
Q Consensus        83 Y~C~~~~~~~   92 (267)
                      |+|.+.+...
T Consensus        82 ytC~V~H~~~   91 (102)
T d1i1ca2          82 FTCSVLHEGL   91 (102)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.4e-05  Score=45.55  Aligned_cols=59  Identities=14%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-----------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      .+..|++|+|.|.... ....+.++|+|.....           .....+.|..++..|+|.|+|......
T Consensus        14 ~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            6888999999998642 3457888887764321           123569999999999999999876543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.82  E-value=7e-05  Score=47.78  Aligned_cols=60  Identities=18%  Similarity=0.481  Sum_probs=42.6

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC------------------C----------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP------------------D----------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~------------------~----------~~~~~l~i~~~~~  190 (267)
                      .....+|++++|.|.+.|..  ...+.||+..  +.+.                  .          .+...|.|.++..
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            34677899999999987653  4478999832  1110                  0          0124589999999


Q ss_pred             CCCeEEEEEEEc
Q psy3045         191 EDKGMYQCVIRN  202 (267)
Q Consensus       191 ~d~g~y~C~~~~  202 (267)
                      +|+|.|.|.+..
T Consensus        90 ~Dsa~YyCA~~~  101 (123)
T d1hxmb1          90 QDIATYYCALWE  101 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCcEEEEeeeC
Confidence            999999998754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=9.9e-06  Score=50.51  Aligned_cols=67  Identities=18%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceecc--cc----------CCceEEE--Ee----eEEEEeecccC
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA--VP----------LNDRVKQ--VS----GTLIIKEAKVE   78 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~--~~----------~~~~~~~--~~----~~l~i~~~~~~   78 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....-.  +.          +..|+..  ++    ..|.+.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1           9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             CSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             CceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            346789999999999998       889886443322110  01          1222221  11    25888999999


Q ss_pred             CCeeEEEEEEcC
Q psy3045          79 DSGKYLCVVNNS   90 (267)
Q Consensus        79 d~G~Y~C~~~~~   90 (267)
                      |++.|.|.....
T Consensus        89 DTAvYyCAr~~~  100 (116)
T d1fn4b1          89 DTGTYYCTRDLY  100 (116)
T ss_dssp             CCEEEEEEEECS
T ss_pred             CCEEEEEEeecC
Confidence            999999976543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=1.4e-05  Score=49.99  Aligned_cols=60  Identities=18%  Similarity=0.416  Sum_probs=42.8

Q ss_pred             eEEEecCCCEEEEeEeCCCC---CceEEEEEC--CccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP---VKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMY  196 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~g~y  196 (267)
                      ...+.+|++++|.|...+..   .-.+.||+.  |+.+.                     ..+...|.|.++..+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            45788999999999986432   224889973  22110                     01346799999999999999


Q ss_pred             EEEEEc
Q psy3045         197 QCVIRN  202 (267)
Q Consensus       197 ~C~~~~  202 (267)
                      .|....
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=4.5e-06  Score=51.04  Aligned_cols=60  Identities=20%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEEC--CccCC-------------C----------CCCCeEEeccCCCCCCeEEEEE
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVP-------------D----------HNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~-------------~----------~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      .|.+|++++|.|.... ....+.|||.  ++.+.             .          .....|.|.++..+|+|.|.|.
T Consensus         4 sV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA   82 (96)
T d1ymmd1           4 SIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCA   82 (96)
T ss_dssp             CCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEE
T ss_pred             eECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEe
Confidence            5778999999998654 3457999983  22211             0          0235699999999999999998


Q ss_pred             EEcCCC
Q psy3045         200 IRNEQE  205 (267)
Q Consensus       200 ~~~~~~  205 (267)
                      +....+
T Consensus        83 ~~~~~g   88 (96)
T d1ymmd1          83 TDTTSG   88 (96)
T ss_dssp             EEETTS
T ss_pred             EecCCC
Confidence            876544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.81  E-value=1.6e-05  Score=49.09  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=46.2

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCee
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGK   82 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~   82 (267)
                      +|.+.+.+.  ......++.++|.|.+.+       +.|.+++.......   .....++.....+.|.|..-.+.....
T Consensus         4 ~P~V~l~~p--s~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   81 (102)
T d1igtb4           4 APQVYVLPP--PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNS   81 (102)
T ss_dssp             CCEEEEECC--CGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCC
T ss_pred             CCEEEEECC--CHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCE
Confidence            455554431  222235788999999988       99999643211111   111122233445677777666666778


Q ss_pred             EEEEEEcCC
Q psy3045          83 YLCVVNNSV   91 (267)
Q Consensus        83 Y~C~~~~~~   91 (267)
                      |+|.+.+..
T Consensus        82 ytC~V~H~~   90 (102)
T d1igtb4          82 YSCSVVHEG   90 (102)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999999864

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.80  E-value=4.5e-05  Score=48.49  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=43.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC---------------------------CCCCCeEEeccCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP---------------------------DHNEPVFRIDSVR  189 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~---------------------------~~~~~~l~i~~~~  189 (267)
                      +......+|++++|.|...+..  ...+.||+..  +.+.                           ..+...|.|.++.
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            3345677899999999876542  3468999832  2110                           0112469999999


Q ss_pred             CCCCeEEEEEEEc
Q psy3045         190 KEDKGMYQCVIRN  202 (267)
Q Consensus       190 ~~d~g~y~C~~~~  202 (267)
                      .+|+|.|.|....
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=1.5e-05  Score=49.57  Aligned_cols=65  Identities=23%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             eEEecCCCeEEEEEEecc-------eeeeecccCcceec-------------cccCCceEEEE------eeEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-------------AVPLNDRVKQV------SGTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-------------~~~~~~~~~~~------~~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+       +.|++...+....-             ......|+...      ...|.+.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            457899999999999998       78888633321110             11112343332      13688999999


Q ss_pred             CCCeeEEEEEE
Q psy3045          78 EDSGKYLCVVN   88 (267)
Q Consensus        78 ~d~G~Y~C~~~   88 (267)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1b2wh1          89 EDTAVYYCARG   99 (117)
T ss_dssp             GGCEEEECCEE
T ss_pred             CcceEEEEccc
Confidence            99999999754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=2.9e-05  Score=47.79  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             cCCCeEEEEEEecc-------eeeeecccCcceec-cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV-AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..++.++|.|.+.+       +.|.+++....... .....++.....+.|.|..-.+ +.|.|+|.+.+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            46789999999999       99987543221111 1111122223445677765555 367899999986544

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.79  E-value=4.2e-05  Score=48.33  Aligned_cols=65  Identities=20%  Similarity=0.342  Sum_probs=43.8

Q ss_pred             eEEecCCCeEEEEEEecc--------eeeeecccCcce------------eccccCCceEEE--E----eeEEEEeeccc
Q psy3045          24 RFKKPGGESFALLCEAQE--------NMWFKFIEGSSR------------KVAVPLNDRVKQ--V----SGTLIIKEAKV   77 (267)
Q Consensus        24 ~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~------------~~~~~~~~~~~~--~----~~~l~i~~~~~   77 (267)
                      ...+++|+++.|.|.+.+        +.|++...+...            .....+..|+..  +    ...|.+.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            457889999999999876        688886333221            111122334322  1    13689999999


Q ss_pred             CCCeeEEEEEE
Q psy3045          78 EDSGKYLCVVN   88 (267)
Q Consensus        78 ~d~G~Y~C~~~   88 (267)
                      +|++.|.|...
T Consensus        89 eDtAvYyCAr~   99 (127)
T d3cx5j1          89 EDTATYYCARS   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999854

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.79  E-value=3.1e-05  Score=47.52  Aligned_cols=57  Identities=19%  Similarity=0.594  Sum_probs=39.2

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..|+..+|.|.+.|+ | ...+.|.+||..+..+         ..      +.|.+   ...+...|+|.+.|..-.
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~sl~   90 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHWGLE   90 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEECCCC
Confidence            457778999999987 5 5599999999876532         11      22333   334455899999997643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.6e-06  Score=51.52  Aligned_cols=61  Identities=16%  Similarity=0.365  Sum_probs=41.7

Q ss_pred             cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      .++.++|.|.+.++ | ...+.|.+||..+...          .+      +.|.+..-.......|+|.+.|......
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~~   96 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPS   96 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCCC
Confidence            36779999999885 4 4699999999876421          11      2344544444455689999998765443

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4e-05  Score=47.71  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec----c-ccCCceEEEEeeEEEEeecccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV----A-VPLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~-~~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      .+|.+.+.+.  ......++.++|.|.+.+       +.|++++.......    . ....+......+.|.|..-.+..
T Consensus         4 ~~P~V~l~~P--s~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1c5cl2           4 AAPSVFIFPP--SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEK   81 (107)
T ss_dssp             BCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTT
T ss_pred             cCCEEEEECC--CHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCC
Confidence            4566655442  212224678999999998       99999743221111    1 11223344456678887766666


Q ss_pred             CeeEEEEEEcCCCc
Q psy3045          80 SGKYLCVVNNSVGG   93 (267)
Q Consensus        80 ~G~Y~C~~~~~~~~   93 (267)
                      ...|+|.+.+....
T Consensus        82 ~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          82 HKVYACEVTHQGLS   95 (107)
T ss_dssp             CCEEEEEEECTTCS
T ss_pred             CCEEEEEEEECCCC
Confidence            66899999986543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.1e-05  Score=48.04  Aligned_cols=63  Identities=11%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------C----CCeEEeccCCCC--CCeEEEEEEEcCCCCc
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------N----EPVFRIDSVRKE--DKGMYQCVIRNEQESA  207 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~----~~~l~i~~~~~~--d~g~y~C~~~~~~~~~  207 (267)
                      ....+.+.|.|.+.|+ | ...|+|.+++..+...          .    .+.|.+......  ....|+|.+.|..+..
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            3346779999999986 5 4699999998765421          1    134555544433  2348999999987544


Q ss_pred             e
Q psy3045         208 Q  208 (267)
Q Consensus       208 ~  208 (267)
                      .
T Consensus        98 ~   98 (105)
T d1dn0b2          98 E   98 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=7.6e-05  Score=44.61  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .||...+..     ....++.++|.|.+.+       +.|.+++.......    .....+......+.|.+.   ..+.
T Consensus         2 ~pP~v~v~~-----~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~   73 (89)
T d2mhaa1           2 DSPKAHVTH-----HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKE   73 (89)
T ss_dssp             BCCEEEECC-----EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTT
T ss_pred             CCCEeEEEc-----cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCC
Confidence            356555433     2345678999999999       89999643221111    111222222333455554   3445


Q ss_pred             eeEEEEEEcCC
Q psy3045          81 GKYLCVVNNSV   91 (267)
Q Consensus        81 G~Y~C~~~~~~   91 (267)
                      ..|+|.+.+..
T Consensus        74 ~~ytC~V~H~~   84 (89)
T d2mhaa1          74 QYYTCHVYHQG   84 (89)
T ss_dssp             TTCEEEEECSS
T ss_pred             CEEEEEEEECC
Confidence            57999998764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.6e-05  Score=46.19  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             EEecCCCeEEEEEEecc-------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccC--CCeeEEEEEEcCCC
Q psy3045          25 FKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVE--DSGKYLCVVNNSVG   92 (267)
Q Consensus        25 ~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~--d~G~Y~C~~~~~~~   92 (267)
                      ......+.+.|.|.+.+       +.|.+++........   ....++.....+.|.|..-.+.  ....|+|.+.+..+
T Consensus        16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            34456788999999999       999986443221111   1111222233445666555443  22479999998765


Q ss_pred             ccEE
Q psy3045          93 GESV   96 (267)
Q Consensus        93 ~~~~   96 (267)
                      ....
T Consensus        96 ~~~~   99 (105)
T d1dn0b2          96 NKEK   99 (105)
T ss_dssp             CEEE
T ss_pred             CEEe
Confidence            5433

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=3.9e-05  Score=48.68  Aligned_cols=62  Identities=19%  Similarity=0.404  Sum_probs=42.8

Q ss_pred             CceEEEecCCCEEEEeEeCCCC---CceEEEEECC--ccCC------------------------CCCCCeEEeccCCCC
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNP---VKTISWMKDG--KPVP------------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p---~~~~~W~~~~--~~~~------------------------~~~~~~l~i~~~~~~  191 (267)
                      |....+.+|+.++|.|......   ...+.|+|..  +...                        ......|.|.++..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            3445778899999999964332   2257899842  2110                        012357999999999


Q ss_pred             CCeEEEEEEEc
Q psy3045         192 DKGMYQCVIRN  202 (267)
Q Consensus       192 d~g~y~C~~~~  202 (267)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=0.00011  Score=45.72  Aligned_cols=60  Identities=17%  Similarity=0.348  Sum_probs=42.4

Q ss_pred             EEecCCCEEEEeEeCCC--CCceEEEEECC--ccC----C-C---------------------CCCCeEEeccCCCCCCe
Q psy3045         145 TIDFGRPAQFTCKYEGN--PVKTISWMKDG--KPV----P-D---------------------HNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~~----~-~---------------------~~~~~l~i~~~~~~d~g  194 (267)
                      .+.+|++++|.|..++.  ....+.|++..  +..    . .                     .+...|+|.+++.+|+|
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa   85 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG   85 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence            67889999999997653  34568899842  211    0 0                     01245888999999999


Q ss_pred             EEEEEEEcCC
Q psy3045         195 MYQCVIRNEQ  204 (267)
Q Consensus       195 ~y~C~~~~~~  204 (267)
                      .|.|...+..
T Consensus        86 ~YyCa~~~~~   95 (110)
T d1u9ka_          86 LYRCVIYHPP   95 (110)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEeCCC
Confidence            9999976543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.73  E-value=2.9e-05  Score=48.35  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             EEecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------C-----CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045         145 TIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ  208 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  208 (267)
                      ....+..++|.|.+.++ | ...+.|.+||..+...         +     .+.|.+..-..  ...|+|.+.|......
T Consensus        20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~~~   97 (107)
T d1hxmb2          20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNKNG   97 (107)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSGGG
T ss_pred             HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCCCC
Confidence            45557789999999886 4 4589999999877532         1     12344433222  2379999999765543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.72  E-value=4.9e-05  Score=46.41  Aligned_cols=76  Identities=20%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .+|.+.+.+.   .....++..+|.|.+.+       +.|++++.......    .....+....   .+....+...+.
T Consensus         3 V~P~V~l~~~---~~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~---~~s~l~~~~~~~   76 (98)
T d1d5mb1           3 VYPEVTVYPA---KTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ---TLVMLETVPRSG   76 (98)
T ss_dssp             BCCEEEEEEC-----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEE---EEEEEECCCCTT
T ss_pred             CCCEEEEECC---CccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEE---EEEEeeEcCCCC
Confidence            4566666542   12344677789999999       99999643221111    0111111111   222334567778


Q ss_pred             eeEEEEEEcCCCc
Q psy3045          81 GKYLCVVNNSVGG   93 (267)
Q Consensus        81 G~Y~C~~~~~~~~   93 (267)
                      +.|+|.+.+..-.
T Consensus        77 ~~ytC~V~H~sl~   89 (98)
T d1d5mb1          77 EVYTCQVEHPSVT   89 (98)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEECCCC
Confidence            8999999986543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.71  E-value=5.1e-05  Score=46.36  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      .+|.+.+.+.   ..+..|+..+|.|.+.+       +.|++++.......    .....+......+.|.+.   .++.
T Consensus         4 ~~P~V~v~~~---~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~   77 (99)
T d1uvqa1           4 EVPEVTVFSK---SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSAD   77 (99)
T ss_dssp             CCCEEEEEES---SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTT
T ss_pred             cCCEEEEEcC---CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCC
Confidence            4576665541   12456788999999999       99999744221110    111122222233345543   4556


Q ss_pred             eeEEEEEEcCC
Q psy3045          81 GKYLCVVNNSV   91 (267)
Q Consensus        81 G~Y~C~~~~~~   91 (267)
                      ..|+|.+.+..
T Consensus        78 ~~ytC~V~H~s   88 (99)
T d1uvqa1          78 EIYDCKVEHWG   88 (99)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEEeCC
Confidence            68999999864

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.70  E-value=8.1e-05  Score=45.13  Aligned_cols=58  Identities=12%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             EEecCCCEEEEeEeCCCCCceEEEEECCccCC----------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045         145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE  203 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~  203 (267)
                      .+..|++|+|.|.... ....+.++|+|....          ......+.|..++..|+|+|+|.....
T Consensus        12 ~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          12 LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             ccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            7888999999999653 345788899875421          112356999999999999999988654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=2.5e-05  Score=46.82  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=37.3

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------------EPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ..++.++|.|.+.|+ | ...++|.+||..+..+.               .+.|.+.   ..+...|+|.+.|..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence            346789999999997 4 45899999998765321               1234343   233346999998865

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.68  E-value=5.1e-05  Score=46.20  Aligned_cols=61  Identities=8%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CCC---eEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEP---VFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ..++..+|.|.+.|+ | ...+.|.+||..+..+         ...   ......+..++...|+|.+.|..-..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            346677899999986 4 5699999999765432         111   12222345566679999999976443

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8.3e-05  Score=44.90  Aligned_cols=71  Identities=21%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccc-----cCCceEEEEeeEEEEeecccCC
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV-----PLNDRVKQVSGTLIIKEAKVED   79 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d   79 (267)
                      .||.+.+..      -..++.++|.|.+.+       +.|++|++........     ...+........|.   +...+
T Consensus         3 vpP~V~v~~------~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~---v~~~~   73 (94)
T d1de4a1           3 VPPLVKVTH------HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLA---VPPGE   73 (94)
T ss_dssp             BCCEEEEEE------EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEE---ECTTC
T ss_pred             CCCEEEEEE------cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEE---ECCCC
Confidence            467665432      235678999999999       9999975433211110     01111111222343   44556


Q ss_pred             CeeEEEEEEcCC
Q psy3045          80 SGKYLCVVNNSV   91 (267)
Q Consensus        80 ~G~Y~C~~~~~~   91 (267)
                      .+.|+|.+.+..
T Consensus        74 ~~~ytC~V~H~s   85 (94)
T d1de4a1          74 EQRYTCQVEHPG   85 (94)
T ss_dssp             GGGEEEEEECTT
T ss_pred             CCEEEEEEEeCC
Confidence            678999999864

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=49.24  Aligned_cols=56  Identities=27%  Similarity=0.527  Sum_probs=39.2

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CC-----CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE-----PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~-----~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.++|.|.+.++ | ...|.|.+||..+...          ++     +.|.+..-.......|+|.|.|..
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5678999999886 4 4589999999876421          11     334454444455679999999865

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00056  Score=41.23  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=40.7

Q ss_pred             EecCCCeEEEEEEecc------eeeeecccCcce---eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          26 KKPGGESFALLCEAQE------NMWFKFIEGSSR---KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~------~~W~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      ....|+.++|.|.+.+      +.|++++.....   .......++.....+.|.+.   ..+...|+|.+.+..-..
T Consensus        12 ~~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          12 EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             ccCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            3457888999999999      999986432211   11111222333444556664   345679999999875443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.66  E-value=3.9e-06  Score=52.23  Aligned_cols=79  Identities=11%  Similarity=0.132  Sum_probs=47.1

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCCe
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      .+|.+.+.+.  ...-..+..+.|.|.+.+       +.|++++........   ....+......+.|.|..-.+.+..
T Consensus         4 ~~P~V~v~~p--s~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~   81 (104)
T d1nfde2           4 SSPKVTVFPP--SPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHN   81 (104)
T ss_dssp             BCCEEECCCC--CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCS
T ss_pred             cCCEEEEECC--CHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCC
Confidence            4566665542  211224678999999998       999997443221111   1112222234456777766666677


Q ss_pred             eEEEEEEcCCC
Q psy3045          82 KYLCVVNNSVG   92 (267)
Q Consensus        82 ~Y~C~~~~~~~   92 (267)
                      .|+|.+.+...
T Consensus        82 ~ytC~V~H~~~   92 (104)
T d1nfde2          82 RVSCQVTHEGE   92 (104)
T ss_dssp             CEEEEEECTTT
T ss_pred             EEEEEEEECCC
Confidence            89999998654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.65  E-value=1.7e-05  Score=48.31  Aligned_cols=61  Identities=20%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             cCCCeEEEEEEecc-------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      ..++.++|.|.+.+       +.|++++.......   .....+......+.|.+.   ..|...|+|.+.+..
T Consensus        14 ~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          14 PGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             CSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            35678999999999       99999643221111   111222233334456554   345668999998854

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.64  E-value=8.7e-05  Score=45.13  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=38.1

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCe
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSG   81 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G   81 (267)
                      +|.+.+.+.   .....|+.++|.|.+.+       +.|.+++.......    .....+......+.|.   +...+..
T Consensus         2 ~P~V~v~p~---~~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~---v~~~~~~   75 (97)
T d1uvqb1           2 EPTVTISPS---RTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE---MTPQRGD   75 (97)
T ss_dssp             CCEEEEEEC-----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEE---CCSCTTC
T ss_pred             CCEEEEecC---CcccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEec---cCCCCCC
Confidence            455555441   12345778899999999       99999643211110    0111122222223343   4566778


Q ss_pred             eEEEEEEcCCCc
Q psy3045          82 KYLCVVNNSVGG   93 (267)
Q Consensus        82 ~Y~C~~~~~~~~   93 (267)
                      .|+|.+.+..-.
T Consensus        76 ~ytC~V~H~sl~   87 (97)
T d1uvqb1          76 VYTCHVEHPSLQ   87 (97)
T ss_dssp             CEEEEEECTTCS
T ss_pred             EEEEEEEeCCCC
Confidence            999999986543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=6.6e-05  Score=43.35  Aligned_cols=54  Identities=24%  Similarity=0.483  Sum_probs=41.1

Q ss_pred             cCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------CCeEEeccCCC-CCCeEEEEEEEcC
Q psy3045         148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRK-EDKGMYQCVIRNE  203 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------~~~l~i~~~~~-~d~g~y~C~~~~~  203 (267)
                      .|.+|.|+|.-.  ....+.|-+++..+....        ...|.+...+. +++|.|.|.+...
T Consensus         9 SGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           9 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             ETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             eCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCC
Confidence            399999999743  345799999987765432        35788888775 7899999998653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.64  E-value=7.4e-05  Score=45.62  Aligned_cols=60  Identities=18%  Similarity=0.512  Sum_probs=39.5

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CCCe---EEeccCCCCCCeEEEEEEEcCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~~~---l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ...|+..+|.|.+.|+ | ...++|.+||..+..+         .+.+   .....+..++...|+|.+.|..-
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGL   89 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            3457788999999987 4 5589999999876432         1111   11122334455689999998753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=2.6e-05  Score=46.96  Aligned_cols=55  Identities=16%  Similarity=0.413  Sum_probs=37.9

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC-------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH-------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~-------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +..++|.|.+.|+ | ...++|.+||..+...       .+      +.|.+   ...+...|+|.+.|..-.
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            4578999999986 5 4599999999877532       11      22333   334556899999887543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=45.19  Aligned_cols=58  Identities=21%  Similarity=0.629  Sum_probs=40.1

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC--------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN--------E------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~--------~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      +..|+..+|.|.+.|+ | ...+.|.+||..+....        +      +.|.+   ..++...|+|.+.|..-.
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCC
Confidence            3457888999999986 4 45999999998765321        1      22333   344555799999998643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=45.52  Aligned_cols=63  Identities=13%  Similarity=0.340  Sum_probs=45.3

Q ss_pred             CceEEEecCCCEEEEeEeCCCCCceEEEEECC--ccCC-------C-----------------CCCCeEEeccCCCCCCe
Q psy3045         141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG--KPVP-------D-----------------HNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~~~-------~-----------------~~~~~l~i~~~~~~d~g  194 (267)
                      |....+.+|++++|.|...+.....+.||+..  +.+.       .                 .....|.|.....+|++
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa   87 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCc
Confidence            45557889999999998766555679999852  2210       0                 01356888888999999


Q ss_pred             EEEEEEEcC
Q psy3045         195 MYQCVIRNE  203 (267)
Q Consensus       195 ~y~C~~~~~  203 (267)
                      .|.|.....
T Consensus        88 ~Y~Ca~~~~   96 (112)
T d1fo0b_          88 TLYCTCSAD   96 (112)
T ss_dssp             EEEEEEESS
T ss_pred             cEEEEEecC
Confidence            999997543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.62  E-value=1.6e-05  Score=51.27  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec---------cccCCceEEEEeeEEEEeec
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV---------AVPLNDRVKQVSGTLIIKEA   75 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~   75 (267)
                      .||.+.+.+. ....+..+..++|.|.+.+       +.|++++.......         .....+......+.|.|..-
T Consensus         3 ~PP~V~l~~P-s~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~   81 (127)
T d1ogae2           3 FPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSAT   81 (127)
T ss_dssp             BCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHH
T ss_pred             cCCEEEEECC-CHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHH
Confidence            4666655431 2223456788999999999       99998643221110         00112333445567888777


Q ss_pred             ccCCCe-eEEEEEEcCC
Q psy3045          76 KVEDSG-KYLCVVNNSV   91 (267)
Q Consensus        76 ~~~d~G-~Y~C~~~~~~   91 (267)
                      .+.+.| .|+|.+.+..
T Consensus        82 ~W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          82 FWQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HHTCTTCEEEEEEEECC
T ss_pred             HhCCCCCEEEEEEEECC
Confidence            766655 7999998754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=9.7e-05  Score=45.82  Aligned_cols=57  Identities=23%  Similarity=0.604  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC------C---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~------~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|.  |+.+.      .                     .+...|.+.+++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            678899999999999875  347889884  22221      0                     1124688999999999


Q ss_pred             eEEEEEEE
Q psy3045         194 GMYQCVIR  201 (267)
Q Consensus       194 g~y~C~~~  201 (267)
                      +.|.|...
T Consensus        91 AvYYCAr~   98 (117)
T d1c5db1          91 AIYFCTRE   98 (117)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEecc
Confidence            99999643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00044  Score=41.47  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             eeEEecCCCeEEEEEEecc----ee-eeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045          23 IRFKKPGGESFALLCEAQE----NM-WFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV   96 (267)
Q Consensus        23 ~~~~v~~g~~v~l~C~~~~----~~-W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (267)
                      +.+.+.+|+++.|.|.++.    +. |..+ ++.    .......+. .....++|.++...+.|.|.|.+... |....
T Consensus        13 ~~V~v~eg~~~vIPC~vT~P~~~VtL~~~~-~~~----~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~   86 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTSPNITVTLKKFP-LDT----LIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYK   86 (95)
T ss_dssp             EEEEECTTSCEEECCCBSCTTSCCEEEETT-TEE----ECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEE
T ss_pred             CEEEEeCCCCEEEEccCCCCCceeEEEecc-CCc----cCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEE
Confidence            5688999999999999999    33 4332 111    111122222 22346899999999999999999765 34333


Q ss_pred             EEE
Q psy3045          97 ETV   99 (267)
Q Consensus        97 ~~~   99 (267)
                      +..
T Consensus        87 S~y   89 (95)
T d1fltx_          87 TNY   89 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.6e-06  Score=52.83  Aligned_cols=59  Identities=15%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC-------------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH-------------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~-------------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +..++.++|.|.+.++ | ...|.|++||..+...             .+      +.|.|..-.......|+|.|.|..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            3457789999999886 5 4489999999876421             11      233443333334568999999865

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.57  E-value=0.00016  Score=45.10  Aligned_cols=58  Identities=26%  Similarity=0.548  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------CC---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------PD---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+      ..                     .+...|.|.+++.+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            678899999999998864  4468898852  111      00                     0123688999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      +.|.|....
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999997654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.54  E-value=5.7e-05  Score=47.96  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             CCcccCCCCceeEEecCCCeEEEEEEecc---------eeeeecccCcceecc---ccCCceEEEEeeEEEEeecccCCC
Q psy3045          13 APTFSSVSDIIRFKKPGGESFALLCEAQE---------NMWFKFIEGSSRKVA---VPLNDRVKQVSGTLIIKEAKVEDS   80 (267)
Q Consensus        13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~   80 (267)
                      +|.+.+.+....-....++.+.|.|.+.+         +.|++++........   ....+......+.|.|..-.+...
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g   94 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG   94 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCC
Confidence            45454443212223456889999999876         779986432221111   111122223445677666655566


Q ss_pred             eeEEEEEEcCCC
Q psy3045          81 GKYLCVVNNSVG   92 (267)
Q Consensus        81 G~Y~C~~~~~~~   92 (267)
                      ..|+|.|.+..-
T Consensus        95 ~~ytC~V~H~~l  106 (119)
T d1igtb3          95 KEFKCKVNNKDL  106 (119)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CeEEEEEEECCC
Confidence            789999998653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=5.9e-06  Score=51.33  Aligned_cols=56  Identities=18%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      +..++|.|.+.++ | ...+.|.++|..+....              .+.|.+..-.......|+|.+.|..
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            4568999999885 5 34899999998875321              1335554434444567999999975

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=0.00014  Score=45.21  Aligned_cols=59  Identities=22%  Similarity=0.572  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC-------CC---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV-------PD---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~-------~~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+       ..                     .+...|.|..++.+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            678899999999998874  3468898732  211       00                     012358999999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      ++.|.|.....
T Consensus        91 tAvYYCA~~~~  101 (117)
T d1iqdb1          91 TAVYYCAVPDP  101 (117)
T ss_dssp             CEEEEEEECSS
T ss_pred             ceEEEEeEcCC
Confidence            99999986543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.00015  Score=45.10  Aligned_cols=58  Identities=19%  Similarity=0.432  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C--C--------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P--D--------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~--~--------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+      .  .                    .+...|.+.+++.+|
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD   89 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED   89 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence            788899999999999875  3478898742  211      0  0                    012358889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        90 tAvYYCAr~~   99 (117)
T d1um5h1          90 SAVYYCARSS   99 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecc
Confidence            9999997543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00033  Score=42.96  Aligned_cols=66  Identities=11%  Similarity=0.124  Sum_probs=42.3

Q ss_pred             cCCCeEEEEEEecc--------eeeeecccCcceecc--ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          28 PGGESFALLCEAQE--------NMWFKFIEGSSRKVA--VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        28 ~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      ..++.+.|.|.+.+        +.|.+++........  ....++.....+.|.|..-.+.....|+|.|.+....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            35788999999998        778876433221111  1112233345567888777776677899999986543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.53  E-value=0.00013  Score=45.66  Aligned_cols=56  Identities=21%  Similarity=0.414  Sum_probs=40.9

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC------C---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP------D---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~------~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+.      .                     .+...|.|.+++.+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            688899999999998865  3468898842  2110      0                     1124588999999999


Q ss_pred             eEEEEEE
Q psy3045         194 GMYQCVI  200 (267)
Q Consensus       194 g~y~C~~  200 (267)
                      +.|.|..
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999943

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00028  Score=39.83  Aligned_cols=54  Identities=26%  Similarity=0.609  Sum_probs=39.0

Q ss_pred             ecCCCEEEEeEeCCCC--CceEEEEECCccCCCCC----CCeEEeccCCCCCCeEEEEEEEc
Q psy3045         147 DFGRPAQFTCKYEGNP--VKTISWMKDGKPVPDHN----EPVFRIDSVRKEDKGMYQCVIRN  202 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~p--~~~~~W~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~  202 (267)
                      ..|..+.|.|.....+  ...-.|.|+|+.+....    ...+.+.  ..+++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~--~~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEe--cCCCCceEEEEEcC
Confidence            4588899999976553  44678999999886542    2345554  47789999999753

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=8.4e-05  Score=45.04  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .+..++|.|.+.+       ++|++++........    .............|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECc
Confidence            3568999999999       899997443221111    1111112222234444   4455568999999864

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=3.8e-05  Score=47.79  Aligned_cols=59  Identities=15%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      +..++|.|.+.++ | ...|.|.+||..+...          .+      +.|.|..-.......|+|.+.|.....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            5678999999886 4 4599999998765431          11      234444333334568999999876443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.4e-05  Score=46.34  Aligned_cols=57  Identities=21%  Similarity=0.433  Sum_probs=37.0

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CC--CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE--PVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~--~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ++.++|.|.+.|+ | ...++|.+||..+...          +.  .......+...+...|+|.+.|..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            5679999999987 4 5589999999876432          11  1111112233444589999998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.00042  Score=39.66  Aligned_cols=61  Identities=16%  Similarity=0.309  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEeEeCCC-CCceEEEEE-CCcc---CCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045         145 TIDFGRPAQFTCKYEGN-PVKTISWMK-DGKP---VPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~~~~~W~~-~~~~---~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      .+..|+.+.|.|.+.-- ..|+++|-+ +++.   +...             .-..|.+..+-.+|.|.|+|.|.-..+
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            67789999999998643 467999987 4432   2211             114577889999999999999976543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=0.00018  Score=44.49  Aligned_cols=58  Identities=21%  Similarity=0.514  Sum_probs=41.6

Q ss_pred             eEEEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCC
Q psy3045         143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~  190 (267)
                      -..+.+|+++.|.|.++|+.  .-.+.|+|.  |+-+.       .                     .+...|.+.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            34788999999999999875  346888873  22110       0                     0124578889999


Q ss_pred             CCCeEEEEEE
Q psy3045         191 EDKGMYQCVI  200 (267)
Q Consensus       191 ~d~g~y~C~~  200 (267)
                      +|.+.|.|.-
T Consensus        89 eDtAvYYCAr   98 (116)
T d1mjuh1          89 DDSAVYYCAN   98 (116)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEcc
Confidence            9999999964

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00015  Score=45.55  Aligned_cols=57  Identities=18%  Similarity=0.496  Sum_probs=40.5

Q ss_pred             EEecCCCEEEEeEeCCCC----CceEEEEEC--CccCC---------------------------CCCCCeEEeccCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP----VKTISWMKD--GKPVP---------------------------DHNEPVFRIDSVRKE  191 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p----~~~~~W~~~--~~~~~---------------------------~~~~~~l~i~~~~~~  191 (267)
                      .+.+|++++|.|.+.|+.    ...+.|+|.  |+.+.                           ..+...|.|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            567799999999987653    236889984  22210                           011246889999999


Q ss_pred             CCeEEEEEEE
Q psy3045         192 DKGMYQCVIR  201 (267)
Q Consensus       192 d~g~y~C~~~  201 (267)
                      |++.|.|...
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999744

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.48  E-value=0.00031  Score=43.57  Aligned_cols=59  Identities=20%  Similarity=0.413  Sum_probs=42.9

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------C---------------------CCCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------P---------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~---------------------~~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|.  |+-+      .                     ..+...|.|.+++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            678899999999998864  447889884  2211      0                     01124588999999999


Q ss_pred             eEEEEEEEcC
Q psy3045         194 GMYQCVIRNE  203 (267)
Q Consensus       194 g~y~C~~~~~  203 (267)
                      +.|.|.....
T Consensus        91 AvYyCAr~~~  100 (116)
T d7fabh1          91 AVYYCARNLI  100 (116)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEeeeecC
Confidence            9999986543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2e-05  Score=48.67  Aligned_cols=56  Identities=20%  Similarity=0.455  Sum_probs=37.9

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.++|.|.+.++ | ...+.|.+||..+..+         .+      +.|.+..........|+|.+.|..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6779999999986 4 4589999999877532         11      233343333333557999999964

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=9.7e-05  Score=45.54  Aligned_cols=65  Identities=20%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCccee--ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRK--VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE   94 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   94 (267)
                      .+..++|.|.+.+       +.|.+++......  ......+......+.|.|..-.+. ...|+|.+.+.....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCE
Confidence            4678999999999       9997653221111  111122333344556777665553 467999999865543

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.46  E-value=8e-05  Score=45.34  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=36.6

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCC-------------CCCCeE---EeccCCCCCCeEEEEEEEcCCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPD-------------HNEPVF---RIDSVRKEDKGMYQCVIRNEQE  205 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~-------------~~~~~l---~i~~~~~~d~g~y~C~~~~~~~  205 (267)
                      ...++|.|.+.|+ | ...+.|.+||..+..             +...++   ....+...+...|+|.+.|...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4579999999987 4 458999999876531             011111   1123344455689999988653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.46  E-value=0.00014  Score=45.15  Aligned_cols=57  Identities=21%  Similarity=0.517  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|..  .-.+.|+|..  +-+      . .+                     +...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD   90 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence            788899999999999875  4478898742  111      1 00                     12458888999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (117)
T d1jpth1          91 TAVYYCARD   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00016  Score=45.25  Aligned_cols=57  Identities=19%  Similarity=0.487  Sum_probs=41.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  ...+.|+|.  |+.+.       .                     .+...|.|.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            678899999999988764  346889874  22110       0                     112358889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999864

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=9.1e-05  Score=46.02  Aligned_cols=59  Identities=15%  Similarity=0.378  Sum_probs=39.8

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC----------CC------CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA  207 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~  207 (267)
                      ++.++|.|.+.++ | ...|.|.+||..+...          .+      +.|.|..-..+....|+|.+.|.....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            5679999999886 5 4599999998766421          11      234444333445558999999976443

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00041  Score=43.32  Aligned_cols=58  Identities=19%  Similarity=0.456  Sum_probs=42.2

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eD   91 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED   91 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCc
Confidence            688999999999999875  3468898832  111      0 0                     012358888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        92 tA~YYCAr~~  101 (122)
T d1vgeh1          92 TAVYYCARDP  101 (122)
T ss_dssp             CEEEEEEEET
T ss_pred             ceEEEEeecC
Confidence            9999997653

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.44  E-value=0.00012  Score=44.79  Aligned_cols=56  Identities=20%  Similarity=0.486  Sum_probs=38.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC---------------------------CCCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP---------------------------DHNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~---------------------------~~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  ...+.|+|..  +-+.                           ..+...|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            467799999999998763  4467898742  2110                           01224588999999999


Q ss_pred             eEEEEEE
Q psy3045         194 GMYQCVI  200 (267)
Q Consensus       194 g~y~C~~  200 (267)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.44  E-value=0.00016  Score=44.80  Aligned_cols=57  Identities=18%  Similarity=0.476  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC------C---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~------~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|.  |+-+.      .                     .+...|.+.+++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            678899999999998864  447889884  22210      0                     0124588999999999


Q ss_pred             eEEEEEEE
Q psy3045         194 GMYQCVIR  201 (267)
Q Consensus       194 g~y~C~~~  201 (267)
                      +.|.|.-.
T Consensus        91 AvYYCAr~   98 (116)
T d1a2yb_          91 ARYYCARE   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999754

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00028  Score=42.90  Aligned_cols=56  Identities=20%  Similarity=0.433  Sum_probs=35.5

Q ss_pred             cCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCCCeE
Q psy3045         148 FGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKEDKGM  195 (267)
Q Consensus       148 ~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d~g~  195 (267)
                      +|++++|.|.++|..  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            488899999998764  3368888732  211      0 0                     012368899999999999


Q ss_pred             EEEEEEcC
Q psy3045         196 YQCVIRNE  203 (267)
Q Consensus       196 y~C~~~~~  203 (267)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99976543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.43  E-value=0.00016  Score=44.61  Aligned_cols=56  Identities=25%  Similarity=0.570  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  ...+.|+|..  +-+      . .                     .+...|.+.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            688899999999998874  4468898842  111      0 0                     012348899999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      ++.|.|..
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999974

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00016  Score=44.98  Aligned_cols=56  Identities=25%  Similarity=0.519  Sum_probs=40.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|++.  |+.+      . .                     .+...|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            678899999999988764  346889874  2111      0 0                     112358899999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999964

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.41  E-value=0.00033  Score=43.55  Aligned_cols=59  Identities=24%  Similarity=0.477  Sum_probs=42.4

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            688899999999998875  3368898742  111      0 0                     012358888999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      ++.|.|.....
T Consensus        91 tAvYYCAr~~~  101 (118)
T d2fbjh1          91 TALYYCARLHY  101 (118)
T ss_dssp             CEEEEEEEEET
T ss_pred             ceEEEeeEecC
Confidence            99999986553

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.41  E-value=0.00014  Score=45.21  Aligned_cols=56  Identities=21%  Similarity=0.494  Sum_probs=40.5

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+      . ..                     +...|.+.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD   90 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence            678899999999998865  3468898742  111      1 00                     12358889999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (118)
T d1nlbh1          91 TATYFCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999953

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.00019  Score=44.60  Aligned_cols=56  Identities=21%  Similarity=0.499  Sum_probs=40.2

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC--------C--------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP--------D--------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~--------~--------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|.  |+-+.        .                    .+...|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eD   90 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCc
Confidence            678899999999998864  446788873  22110        0                    112358889999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      ++.|.|.-
T Consensus        91 tAvYYCAr   98 (117)
T d1mfah1          91 SAVYYCTR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999964

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.39  E-value=9e-05  Score=44.82  Aligned_cols=56  Identities=18%  Similarity=0.445  Sum_probs=36.1

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCCC----------CCe---EEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN----------EPV---FRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~----------~~~---l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.++|.|.+.++ | ...+.|.+||..+....          ..+   .....+...+...|+|.+.|..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            4568999999986 4 55999999998765321          111   1111223334457999998864

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.39  E-value=9.5e-05  Score=44.70  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CCCeEEEEEEecc-------eeeeecccCcceecc-----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045          29 GGESFALLCEAQE-------NMWFKFIEGSSRKVA-----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV   91 (267)
Q Consensus        29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   91 (267)
                      .+..++|.|.+.+       +.|++++........     ....+........|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v---~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRI---CQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEECC
Confidence            4567899999999       999997442221110     0111222222334444   3445567999998754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.38  E-value=0.0002  Score=44.75  Aligned_cols=57  Identities=25%  Similarity=0.429  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEeEeCCCCC----ceEEEEECC--ccCC------C---------------------CCCCeEEeccCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPV----KTISWMKDG--KPVP------D---------------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~----~~~~W~~~~--~~~~------~---------------------~~~~~l~i~~~~~~  191 (267)
                      .+.+|++++|.|.++|+..    -.+.|+|..  +.+.      .                     .+...|.+.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            6788999999999987642    257898742  2210      0                     11245889999999


Q ss_pred             CCeEEEEEEE
Q psy3045         192 DKGMYQCVIR  201 (267)
Q Consensus       192 d~g~y~C~~~  201 (267)
                      |++.|.|...
T Consensus        91 DtAvYYCAr~  100 (120)
T d1ai1h1          91 DTAMYYCSRE  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEec
Confidence            9999999744

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00017  Score=44.79  Aligned_cols=56  Identities=20%  Similarity=0.468  Sum_probs=40.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C-C--------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D-H--------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~-~--------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|+.  .-.+.|+|..  +.+      . . +                    +...|.+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCc
Confidence            678899999999998875  3378898732  211      1 0 0                    12358889999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      ++.|.|.-
T Consensus        91 TAvYYCAr   98 (118)
T d2jelh1          91 SAIYYCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceeeeEEE
Confidence            99999953

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.37  E-value=4.2e-05  Score=46.47  Aligned_cols=53  Identities=13%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             CCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045         149 GRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQ  204 (267)
Q Consensus       149 g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~  204 (267)
                      ++.++|.|.+.|+ | ...+.|++|+..+...        .+      +.|.+.   .++...|+|.+.|..
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            4579999999986 5 4499999998766432        11      223333   334557999998865

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.37  E-value=0.00037  Score=44.11  Aligned_cols=57  Identities=19%  Similarity=0.483  Sum_probs=41.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+      . .                     .+...|.+.+++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            678899999999998764  4468898742  111      0 0                     112458899999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (135)
T d1ieha_          91 TAVYYCAKY   99 (135)
T ss_dssp             CEEEEEEEB
T ss_pred             ceeeEEEEe
Confidence            999999754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.37  E-value=3.2e-05  Score=49.17  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             ecCCCEEEEeEeCCC-C---CceEEEEECCccCCCCC--------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         147 DFGRPAQFTCKYEGN-P---VKTISWMKDGKPVPDHN--------E------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p---~~~~~W~~~~~~~~~~~--------~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ..++.++|.|.+.++ |   ...+.|++++..+....        +      +.|.|..-.......|+|.|.|....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~  107 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  107 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCC
Confidence            457889999999875 4   35789999997764321        1      23333332333456899999997643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.36  E-value=0.00036  Score=43.52  Aligned_cols=57  Identities=21%  Similarity=0.499  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  ...+.|+|..  +.+.       .                     .+...|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            678899999999998764  4478898742  1110       0                     012358888999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            999999754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.36  E-value=0.00031  Score=43.06  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             ecCCCeEEEEEEecc-------eeeeecccCcce---eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          27 KPGGESFALLCEAQE-------NMWFKFIEGSSR---KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      +..|+..+|.|.+.+       +.|++++.....   .......+......+.|.+   ..+|...|+|.+.+..-.
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCC
Confidence            456888899999999       999997432110   0001111222223334544   445566899999987543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.35  E-value=0.00026  Score=43.25  Aligned_cols=57  Identities=18%  Similarity=0.508  Sum_probs=40.9

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------CC------------------------CCCCeEEeccCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------PD------------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~~------------------------~~~~~l~i~~~~~  190 (267)
                      .+.+|++++|.|.++|..  .--+.|+|..  +-+      ..                        .+...|.+.+++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~   90 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKT   90 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCH
Confidence            788999999999998864  3378888732  111      00                        0123588889999


Q ss_pred             CCCeEEEEEEE
Q psy3045         191 EDKGMYQCVIR  201 (267)
Q Consensus       191 ~d~g~y~C~~~  201 (267)
                      +|++.|.|.-.
T Consensus        91 eDTAvYYCAr~  101 (109)
T d2ck0h1          91 EDTGIYYCVRG  101 (109)
T ss_dssp             GGCEEEEEEEE
T ss_pred             hHCEEEEEEEc
Confidence            99999999854

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.35  E-value=1.1e-05  Score=52.10  Aligned_cols=59  Identities=20%  Similarity=0.400  Sum_probs=40.2

Q ss_pred             ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------------CC------CeEEeccCCCCCCe-EEEEEEEcC
Q psy3045         147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------------NE------PVFRIDSVRKEDKG-MYQCVIRNE  203 (267)
Q Consensus       147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------------~~------~~l~i~~~~~~d~g-~y~C~~~~~  203 (267)
                      ..+..++|.|.+.++ | ...|.|++||..+...              .+      +.|.+..-...+.| .|+|.+.|.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            346779999999986 4 4589999998766421              11      34555544445545 799999986


Q ss_pred             CC
Q psy3045         204 QE  205 (267)
Q Consensus       204 ~~  205 (267)
                      ..
T Consensus        98 ~l   99 (127)
T d1ogae2          98 GL   99 (127)
T ss_dssp             CB
T ss_pred             CC
Confidence            53

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.35  E-value=0.00056  Score=43.22  Aligned_cols=58  Identities=19%  Similarity=0.492  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC----------------------------CCCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP----------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~----------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|..  .-.+.|+|.  |+-+.                            ..+...|.+.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDD   89 (130)
T ss_dssp             EECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCC
Confidence            678899999999999864  446889873  22110                            0112358889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        90 tAvYyCAr~~   99 (130)
T d1rhhb1          90 TAVYYCARDF   99 (130)
T ss_dssp             CEEEEEEEEC
T ss_pred             cEEEEEEeec
Confidence            9999998654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.35  E-value=0.00021  Score=44.45  Aligned_cols=57  Identities=23%  Similarity=0.549  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC-------CC---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV-------PD---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~-------~~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|+.  .-.+.|+|.  |+-+       ..                     .+...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD   90 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence            788899999999998864  447888873  2211       00                     012458888999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|.-.
T Consensus        91 tAvYYCAr~   99 (118)
T d1ct8b1          91 SAIYYCARY   99 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeee
Confidence            999999654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00018  Score=45.11  Aligned_cols=57  Identities=25%  Similarity=0.563  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|.  |+.+.       .                     .+...|.|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            677899999999988764  336889874  22210       0                     012358889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00043  Score=43.38  Aligned_cols=58  Identities=19%  Similarity=0.454  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  ...+.|+|..  +.+.       ..                     +...|.|.+++.+|
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eD   90 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCc
Confidence            688899999999998764  4478898842  2210       00                     12348889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tAvYYCAr~~  100 (121)
T d1j05b_          91 TAVYYCAPFG  100 (121)
T ss_dssp             CEEEEEEEEB
T ss_pred             ceEEEeEeec
Confidence            9999997543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.34  E-value=0.00021  Score=44.51  Aligned_cols=58  Identities=21%  Similarity=0.469  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEeEeCCCCC---ceEEEEEC--CccCC---------------------------CCCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNPV---KTISWMKD--GKPVP---------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p~---~~~~W~~~--~~~~~---------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+..   -.+.|+|.  |+-+.                           ..+...|.+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            6788999999999998753   24688873  22210                           0122458889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (119)
T d1ncwh1          91 TATYYCAGLL  100 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEec
Confidence            9999997543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=0.00027  Score=43.85  Aligned_cols=57  Identities=16%  Similarity=0.432  Sum_probs=41.0

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC----------------------------CCCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+.                            ..+...|.+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            677899999999999864  4478898732  1110                            0112458889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (117)
T d1jnhb1          91 SAVYSCSRG   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.33  E-value=0.00035  Score=43.94  Aligned_cols=58  Identities=24%  Similarity=0.616  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+.       .+                     +...|.+.+++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            678899999999998864  4478898842  2210       00                     12357888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        90 tAvYYCAr~~   99 (124)
T d1zvya1          90 TAIYTCGATR   99 (124)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeecc
Confidence            9999998654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=0.00025  Score=44.75  Aligned_cols=58  Identities=21%  Similarity=0.471  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|.  |+-+.       .                     .+...|.+.+++.+|
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eD   90 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSED   90 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCccc
Confidence            678899999999998865  346888873  22110       0                     112358888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tAvYYCAR~~  100 (125)
T d1rihh1          91 SAVYYCARES  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEeeeC
Confidence            9999998653

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00026  Score=40.45  Aligned_cols=49  Identities=22%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             CCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEE
Q psy3045         149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCV  199 (267)
Q Consensus       149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  199 (267)
                      |..+.|.|...-  ...|.|.+++..-....+.++++.--...++|+|+|.
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCccccccCCCEEEEEEEeccCCcceeEe
Confidence            567899995432  2379999998763345566777775556799999996

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.31  E-value=0.00053  Score=42.86  Aligned_cols=58  Identities=22%  Similarity=0.505  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            678899999999998764  3367898742  221      0 0                     012358899999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tAvYYCAr~~  100 (121)
T d1ol0a_          91 TAVYYCAREP  100 (121)
T ss_dssp             CEEEEEEECC
T ss_pred             ceEEEEEEec
Confidence            9999997543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00038  Score=43.38  Aligned_cols=57  Identities=21%  Similarity=0.476  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            678899999999999875  3468898742  111      0 0                     112458889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1rz7h1          91 TAVYYCAAD   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999754

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.29  E-value=9.6e-05  Score=46.22  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec-cccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045          12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-AVPLNDRVKQVSGTLIIKEAKVEDSGKY   83 (267)
Q Consensus        12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   83 (267)
                      .+|.+.+.+. ..... .+..++|.|.+.+       |.|.+++....... .....+......+.|.+..-.+.....|
T Consensus        11 ~~P~V~l~~p-~~~~~-~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   88 (111)
T d1pfca_          11 RIPEVYLLPP-PRNEL-SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESF   88 (111)
T ss_dssp             CCCCCCBCCC-CSCCC-CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCC
T ss_pred             CCCEEEEECC-CHHHh-cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEE
Confidence            4676665542 22222 4678999999999       99988643221111 1111222222334555544443335579


Q ss_pred             EEEEEcCC
Q psy3045          84 LCVVNNSV   91 (267)
Q Consensus        84 ~C~~~~~~   91 (267)
                      +|.+.+..
T Consensus        89 tC~V~H~~   96 (111)
T d1pfca_          89 TCSVMHEA   96 (111)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99999864

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00022  Score=44.38  Aligned_cols=57  Identities=21%  Similarity=0.491  Sum_probs=41.2

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------C-CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------P-DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~-~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|.  |+-+      . .+                     +...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence            678899999999998875  346889874  2211      1 00                     12358889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1eapb1          91 SAVYFCKRS   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.00032  Score=43.99  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=40.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+.       .                     .+...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eD   90 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSD   90 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccccc
Confidence            678899999999999875  3367888732  1110       0                     112468889999999


Q ss_pred             CeEEEEEEE
Q psy3045         193 KGMYQCVIR  201 (267)
Q Consensus       193 ~g~y~C~~~  201 (267)
                      ++.|.|...
T Consensus        91 TA~YYCAR~   99 (124)
T d2b1hh1          91 TALYYCARL   99 (124)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00015  Score=44.80  Aligned_cols=68  Identities=12%  Similarity=0.086  Sum_probs=41.7

Q ss_pred             EecCCCeEEEEEEecc---------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          26 KKPGGESFALLCEAQE---------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~---------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      .+..++.++|.|.+.+         +.|.+++.......   .....+......+.|.|..-.+.....|+|.+.+....
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            4557889999999977         66888643221111   11112223344556777666655667999999986543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.00034  Score=44.60  Aligned_cols=58  Identities=22%  Similarity=0.482  Sum_probs=41.3

Q ss_pred             EEecCCCEEEEeEeCCCC----CceEEEEECC--ccCC-------C--------------------CCCCeEEeccCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP----VKTISWMKDG--KPVP-------D--------------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p----~~~~~W~~~~--~~~~-------~--------------------~~~~~l~i~~~~~~  191 (267)
                      .+.+|++++|.|.++|..    ..-+.|+|..  +.+.       .                    .+...|.|.+++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            688899999999988754    2258898742  2110       0                    01234889999999


Q ss_pred             CCeEEEEEEEc
Q psy3045         192 DKGMYQCVIRN  202 (267)
Q Consensus       192 d~g~y~C~~~~  202 (267)
                      |++.|.|....
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999998654

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.28  E-value=0.00042  Score=43.83  Aligned_cols=58  Identities=21%  Similarity=0.485  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|.  |+-+.       .                     .+...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            678899999999999874  447889874  22110       0                     012347888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tA~YYCAr~~  100 (130)
T d1rzga1          91 TAVFYCASPY  100 (130)
T ss_dssp             CEEEEEEECC
T ss_pred             cEEEEEEEec
Confidence            9999998543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.28  E-value=0.00028  Score=44.40  Aligned_cols=57  Identities=21%  Similarity=0.481  Sum_probs=41.2

Q ss_pred             EEEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------C-CC---------------------CCCeEEeccCCCC
Q psy3045         144 QTIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------P-DH---------------------NEPVFRIDSVRKE  191 (267)
Q Consensus       144 ~~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~-~~---------------------~~~~l~i~~~~~~  191 (267)
                      ..+.+|++++|.|.++|+.  .-.+.|+|.  |+-+      . .+                     +...|.+..++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            3788899999999999875  346889873  2221      1 00                     1235788899999


Q ss_pred             CCeEEEEEE
Q psy3045         192 DKGMYQCVI  200 (267)
Q Consensus       192 d~g~y~C~~  200 (267)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999964

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.27  E-value=0.00038  Score=43.21  Aligned_cols=58  Identities=19%  Similarity=0.441  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------CC---------------------CCCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------PD---------------------HNEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~~---------------------~~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +.+      ..                     .+...|.+.+++.+|+
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            678899999999998874  4478898742  211      00                     1123588999999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      +.|.|.-..
T Consensus        91 A~YyCAr~~   99 (118)
T d1lo4h1          91 AIYYCARGT   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecccC
Confidence            999997543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.27  E-value=0.00023  Score=44.54  Aligned_cols=58  Identities=26%  Similarity=0.533  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-CC---------------------CCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-DH---------------------NEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~~---------------------~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +.+      . .+                     +...|.+.+++.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            678899999999998865  3367898732  111      1 00                     12348889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tAvYYCAr~~  100 (123)
T d1mqkh_          91 TAMYYCVRHE  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccceeEEecC
Confidence            9999997654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.26  E-value=0.00081  Score=42.19  Aligned_cols=57  Identities=23%  Similarity=0.627  Sum_probs=40.0

Q ss_pred             EEecCCCEEEEeEeCCCC--C--ceEEEEEC--CccCC-------C--------------------CCCCeEEeccCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--V--KTISWMKD--GKPVP-------D--------------------HNEPVFRIDSVRKE  191 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~--~~~~W~~~--~~~~~-------~--------------------~~~~~l~i~~~~~~  191 (267)
                      .+.+|++++|.|.+.|..  .  ..+.|+|.  |+.+.       .                    .+...|.|.+++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            678899999999988753  1  25679873  22221       0                    01234888999999


Q ss_pred             CCeEEEEEEE
Q psy3045         192 DKGMYQCVIR  201 (267)
Q Consensus       192 d~g~y~C~~~  201 (267)
                      |++.|.|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.26  E-value=0.00067  Score=42.60  Aligned_cols=58  Identities=26%  Similarity=0.572  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +.+      . .                     .+...|.+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            678899999999998875  3468888742  111      0 0                     012358889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 tavYYCAr~~  100 (126)
T d1dfbh1          91 MALYYCVKGR  100 (126)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEEecc
Confidence            9999997543

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=1.3e-05  Score=49.47  Aligned_cols=68  Identities=13%  Similarity=0.022  Sum_probs=40.1

Q ss_pred             EecCCCeEEEEEEecc--------eeeeecccCccee-ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045          26 KKPGGESFALLCEAQE--------NMWFKFIEGSSRK-VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG   93 (267)
Q Consensus        26 ~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   93 (267)
                      .+..+.+++|.|.+.+        +.|++++...... ......++.....+.|.|..-.+.....|+|.|.+....
T Consensus        14 ~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~~   90 (101)
T d1ow0a1          14 DLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESK   90 (101)
T ss_dssp             HHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSCS
T ss_pred             HHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCCC
Confidence            3567889999999876        9999864322211 111122222223344555444444467999999986543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.25  E-value=0.00066  Score=42.74  Aligned_cols=59  Identities=17%  Similarity=0.428  Sum_probs=42.4

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|+.  .-.+.|+|..  +-+.       .                     .+...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            678899999999999875  3367887732  2110       0                     122457888999999


Q ss_pred             CeEEEEEEEcC
Q psy3045         193 KGMYQCVIRNE  203 (267)
Q Consensus       193 ~g~y~C~~~~~  203 (267)
                      .+.|.|.....
T Consensus        91 TA~YYCAr~~~  101 (128)
T d2nxyd1          91 TAVYFCAGVYE  101 (128)
T ss_dssp             CEEEEEEEEEC
T ss_pred             ceEEEEeEEec
Confidence            99999986543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0008  Score=42.37  Aligned_cols=58  Identities=17%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEE-ECCc-cCC--------------------------CCCCCeEEeccCCCCCCe
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWM-KDGK-PVP--------------------------DHNEPVFRIDSVRKEDKG  194 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~-~~~~-~~~--------------------------~~~~~~l~i~~~~~~d~g  194 (267)
                      .+.+|+.++|.|...+..  ..-+.|+ +... .+.                          ..+...|.|.++..+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            566789999999876442  2233344 4211 110                          012246999999999999


Q ss_pred             EEEEEEEc
Q psy3045         195 MYQCVIRN  202 (267)
Q Consensus       195 ~y~C~~~~  202 (267)
                      .|.|.+..
T Consensus        91 vYyCa~~~   98 (118)
T d1yjdc1          91 IYFCKIEV   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.24  E-value=0.0004  Score=43.67  Aligned_cols=56  Identities=27%  Similarity=0.509  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|..  .-.+.|+|.  |+-+      . .                     .+...|.+.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eD   89 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSED   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCc
Confidence            678899999999998864  446888873  2111      0 0                     122468889999999


Q ss_pred             CeEEEEEE
Q psy3045         193 KGMYQCVI  200 (267)
Q Consensus       193 ~g~y~C~~  200 (267)
                      .+.|.|.-
T Consensus        90 TAvYYCAr   97 (126)
T d1lmka1          90 SAVYYCAR   97 (126)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.23  E-value=0.00044  Score=43.02  Aligned_cols=58  Identities=26%  Similarity=0.538  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC-------C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~-------~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|+.  .-.+.|+|.  |+-+.       .                     .+...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            688899999999998875  336888873  21110       0                     122457888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      .+.|.|....
T Consensus        91 TAvYYCAr~~  100 (120)
T d1ad9b1          91 TAFYFCAREK  100 (120)
T ss_dssp             CEEEEEEEEB
T ss_pred             ceEEEEEEcC
Confidence            9999997543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=3.3e-05  Score=47.93  Aligned_cols=61  Identities=18%  Similarity=0.308  Sum_probs=38.9

Q ss_pred             EecCCCEEEEeEeCCC-CC---ceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         146 IDFGRPAQFTCKYEGN-PV---KTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       146 ~~~g~~v~l~C~~~~~-p~---~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      ...++.++|.|.+.++ |.   ..+.|.+++..+...        .+      +.|.|..-.......|+|.+.|....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            3457889999999875 42   478899998766432        11      22333332233455899999987643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.21  E-value=0.00042  Score=43.59  Aligned_cols=58  Identities=21%  Similarity=0.521  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC----------------------------CCCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~----------------------------~~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +-+.                            ..+...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            678899999999998764  3467888732  1110                            0122458889999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|.-..
T Consensus        91 TavYYCAR~~  100 (127)
T d2fx7h1          91 TAVYYCAREG  100 (127)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecc
Confidence            9999998654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.00024  Score=44.11  Aligned_cols=58  Identities=22%  Similarity=0.484  Sum_probs=41.3

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccCC------C-C--------------------CCCeEEeccCCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPVP------D-H--------------------NEPVFRIDSVRKEDK  193 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~~------~-~--------------------~~~~l~i~~~~~~d~  193 (267)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.+.      . +                    +...|.+.+++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            567899999999999864  447889873  32221      0 0                    123477889999999


Q ss_pred             eEEEEEEEc
Q psy3045         194 GMYQCVIRN  202 (267)
Q Consensus       194 g~y~C~~~~  202 (267)
                      +.|.|....
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999997543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.20  E-value=0.00067  Score=42.22  Aligned_cols=58  Identities=19%  Similarity=0.476  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEEC--CccC------CC------------------------CCCCeEEeccCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKD--GKPV------PD------------------------HNEPVFRIDSVRK  190 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~--~~~~------~~------------------------~~~~~l~i~~~~~  190 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|.  |+-+      ..                        .+...|.+.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            678899999999998764  447888873  2211      00                        0123588889999


Q ss_pred             CCCeEEEEEEEc
Q psy3045         191 EDKGMYQCVIRN  202 (267)
Q Consensus       191 ~d~g~y~C~~~~  202 (267)
                      +|++.|.|....
T Consensus        91 eDtAvYYCA~~~  102 (120)
T d1dlfh_          91 EDTGIYYCTGIY  102 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CCceEEEeeEec
Confidence            999999997543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.20  E-value=0.00057  Score=42.79  Aligned_cols=58  Identities=21%  Similarity=0.486  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C-C---------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P-D---------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~-~---------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|+++.|.|.++|..  .-.+.|+|..  +-+      . .                     .+...|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            678899999999999875  3468898732  111      0 0                     012458888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999997644

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.20  E-value=0.00054  Score=43.34  Aligned_cols=58  Identities=21%  Similarity=0.557  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccCC------------C---------------------CCCCeEEecc
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPVP------------D---------------------HNEPVFRIDS  187 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~~------------~---------------------~~~~~l~i~~  187 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +-+.            .                     .+...|.|.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            677899999999998864  4478898742  1110            0                     0124588999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy3045         188 VRKEDKGMYQCVIRN  202 (267)
Q Consensus       188 ~~~~d~g~y~C~~~~  202 (267)
                      ++.+|++.|.|....
T Consensus        91 l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          91 LKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             ccccceeEEEEEEEe
Confidence            999999999998654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.18  E-value=0.00079  Score=42.20  Aligned_cols=58  Identities=16%  Similarity=0.406  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEeEeCCCC--CceEEEEECC--ccC------C--C--------------------CCCCeEEeccCCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV------P--D--------------------HNEPVFRIDSVRKED  192 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~------~--~--------------------~~~~~l~i~~~~~~d  192 (267)
                      .+.+|++++|.|.++|..  .-.+.|+|..  +.+      .  .                    .+...|.+.+++.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            678899999999998764  3468888732  111      0  0                    112457888999999


Q ss_pred             CeEEEEEEEc
Q psy3045         193 KGMYQCVIRN  202 (267)
Q Consensus       193 ~g~y~C~~~~  202 (267)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (125)
T d1op3h1          91 TAIYYCARKG  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceeEeEeecc
Confidence            9999997643

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=45.44  Aligned_cols=62  Identities=13%  Similarity=0.316  Sum_probs=38.9

Q ss_pred             EEecCCCEEEEeEeCCC-CC---ceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045         145 TIDFGRPAQFTCKYEGN-PV---KTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQES  206 (267)
Q Consensus       145 ~~~~g~~v~l~C~~~~~-p~---~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~  206 (267)
                      .+..++.++|.|.+.|+ |.   ..+.|++++......        .+      +.|.+..-..+....|+|++.|....
T Consensus        12 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~   91 (103)
T d1fp5a1          12 DLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP   91 (103)
T ss_dssp             HHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCS
T ss_pred             HHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            34457889999999875 42   367788888765432        11      22333322233456899999987543