Psyllid ID: psy3049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Secondary Structure (PSIPRED)
ccccccccccHHHHccccccEEEccccccccccHHHHccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcccEEEccccccccccHHHHHHccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mndnnltrlsgDISLLINLrtldisnnklrylpseigavknlspdlwqfTHLTALymndnnltrlsGDISLLINLrtldisnnklrylpseiGDLIYLRELCLnnnnlrtlpyeLGKLFQIQILglhgnplskdymkiynepngTQKLLSYLLDSLQ
Flexible Loop (DISEMBL)
MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Low Complexity Region (SEG)
MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYlrelclnnnnlrtlPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Disordered region (IsUnstruct)
*********SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL*****
Disordered Region (DISOPRED)
MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDS**
Disordered Region (DISEMBL)
********LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Disordered Region (DISPRO)
****NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q8VEG6	555	CCR4-NOT transcription co	yes	N/A	0.853	0.241	0.566	9e-36
Q9ULM6	557	CCR4-NOT transcription co	yes	N/A	0.764	0.215	0.591	4e-35
A2BHJ4	559	CCR4-NOT transcription co	yes	N/A	0.840	0.236	0.563	1e-34
Q96LI5	555	CCR4-NOT transcription co	no	N/A	0.853	0.241	0.558	5e-28
Q6IR85	550	CCR4-NOT transcription co	N/A	N/A	0.764	0.218	0.583	5e-27
Q5XH73	550	CCR4-NOT transcription co	N/A	N/A	0.764	0.218	0.583	8e-27
Q6AXU9	557	CCR4-NOT transcription co	no	N/A	0.764	0.215	0.541	1e-26
Q8K3P5	557	CCR4-NOT transcription co	no	N/A	0.764	0.215	0.541	1e-26
Q5BJ41	552	CCR4-NOT transcription co	N/A	N/A	0.764	0.217	0.541	1e-26
P0CP23	744	Glucose-repressible alcoh	N/A	N/A	0.732	0.154	0.491	4e-23

>sp|Q8VEG6|CNO6L_MOUSE CCR4-NOT transcription complex subunit 6-like OS=Mus musculus GN=Cnot6l PE=1 SV=2

 Score =  149 bits (375), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 106/136 (77%), Gaps = 2/136 (1%)

Query: 23  DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
           +++N K  +    EI G V++LS  LW  THLTAL++NDNNL R+  DI+ L NL  LD+
Sbjct: 27  EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNNLARIPPDIAKLHNLVYLDL 86

Query: 81  SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
           S+NKLR LP+E+G+++ LREL LN+N LR LPYELG+LFQ+Q LGL GNPLS+D M +Y 
Sbjct: 87  SSNKLRSLPAELGNMVSLRELLLNDNYLRVLPYELGRLFQLQTLGLTGNPLSQDIMSLYQ 146

Query: 141 EPNGTQKLLSYLLDSL 156
           +P+GT+KLL+++LD+L
Sbjct: 147 DPDGTRKLLNFMLDNL 162

Plays a role in the deadenylation of mRNAs in the cytoplasm. Has 3'-5' poly(A) exoribonuclease activity for synthetic poly(A) RNA substrate. May be involved in the deadenylation-dependent degradation of mRNAs through the 3'-UTR AU-rich element-mediated mechanism. Involved in deadenylation-dependent degradation of CDKN1B mRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9ULM6|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 99/120 (82%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLTAL+++DN+L+R+  DI+ L NL  LD+S+NK+R LP+E+G+++
Sbjct: 38  GKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LNNN LR LP+ELGKLFQ+Q LGL GNPL++D + +Y EP+GT++LL+YLLD+L
Sbjct: 98  SLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNL 157

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|A2BHJ4|CNO6L_DANRE CCR4-NOT transcription complex subunit 6-like OS=Danio rerio GN=cnot6l PE=2 SV=1

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 25  SNNKLRYLPSEI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83
           S  K  +   EI G V++LS  LW  THLTAL++N+NNL+R+  +I+ L +L  L++S+N
Sbjct: 25  SGKKSHWTELEISGRVRSLSSSLWTLTHLTALHINNNNLSRIPPEIAKLPHLVYLNLSSN 84

Query: 84  KLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143
           KLR LP+E+G+++ LREL LNNN LR LPYELG+LFQ+Q LGL GNPLS+D + +Y EP+
Sbjct: 85  KLRSLPAELGNMVTLRELLLNNNCLRVLPYELGRLFQLQTLGLKGNPLSQDILNLYQEPD 144

Query: 144 GTQKLLSYLLDSL 156
           GT+KLL+Y+LD+L
Sbjct: 145 GTRKLLNYMLDNL 157

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q96LI5|CNO6L_HUMAN CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2

 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 106/136 (77%), Gaps = 2/136 (1%)

Query: 23  DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
           +++N K  +    EI G V++LS  LW  THLTAL++NDN L+R+  DI+ L NL  LD+
Sbjct: 27  EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDL 86

Query: 81  SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
           S+NKLR LP+E+G+++ LREL LNNN LR LPYELG+LFQ+Q LGL GNPLS+D + +Y 
Sbjct: 87  SSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILNLYQ 146

Query: 141 EPNGTQKLLSYLLDSL 156
           +P+GT+KLL+++LD+L
Sbjct: 147 DPDGTRKLLNFMLDNL 162

Plays a role in the deadenylation of mRNAs in the cytoplasm. Has 3'-5' poly(A) exoribonuclease activity for synthetic poly(A) RNA substrate. May be involved in the deadenylation-dependent degradation of mRNAs through the 3'-UTR AU-rich element-mediated mechanism. Involved in deadenylation-dependent degradation of CDKN1B mRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6IR85|CN6LA_XENLA CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-a PE=2 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 97/120 (80%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLT L+++DNNL+R+  DI+ L NL  LD+S+NKLR LP+E+G+++
Sbjct: 38  GRVRSLSTSLWTLTHLTVLHLSDNNLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNVV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LNNN LR LP+ELG+LF++Q LGL GNPLS+D + +Y EP+G +KLL+Y+LD+L
Sbjct: 98  SLRELLLNNNLLRVLPFELGRLFRLQTLGLKGNPLSQDILSLYQEPDGMRKLLNYMLDNL 157

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5XH73|CN6LB_XENLA CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis GN=cnot6l-b PE=2 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 97/120 (80%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLT L+++DNNL+R+  DI+ L NL  LD+S+NKLR LP+E+G+++
Sbjct: 38  GRVRSLSMSLWSLTHLTVLHLSDNNLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNVV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LNNN LR LP+ELG+LF++Q LGL GNPLS+D + +Y EP+G +KLL+Y+LD+L
Sbjct: 98  SLRELLLNNNLLRVLPFELGRLFRLQTLGLKGNPLSQDILGLYQEPDGMRKLLNYMLDNL 157

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Xenopus laevis (taxid: 8355)

>sp|Q6AXU9|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 95/120 (79%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLTAL+++DN+L+ +  DI+ L NL  LD+S+N+++ LP+E+G+++
Sbjct: 38  GKVRSLSSSLWSLTHLTALHLSDNSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LN N LR LP+ELGKLFQ+Q L L GNPL++D + +  EP+GT++LL+YLLD+L
Sbjct: 98  SLRELHLNYNQLRVLPFELGKLFQLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNL 157

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q8K3P5|CNOT6_MOUSE CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 95/120 (79%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLTAL+++DN+L+ +  DI+ L NL  LD+S+N+++ LP+E+G+++
Sbjct: 38  GKVRSLSSSLWSLTHLTALHLSDNSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LN N LR LP+ELGKLFQ+Q L L GNPL++D + +  EP+GT++LL+YLLD+L
Sbjct: 98  SLRELHLNYNQLRVLPFELGKLFQLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNL 157

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5BJ41|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 95/120 (79%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V++LS  LW  THLTAL+++DN+L+ +  DI+ L NL  LD+S+N+++ LP+E+G+++
Sbjct: 38  GKVRSLSSSLWSLTHLTALHLSDNSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMV 97

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LN N LR LP+ELGKLFQ+Q L L GNPL++D + +  EP+GT++LL+YLLD+L
Sbjct: 98  SLRELHLNYNQLRVLPFELGKLFQLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNL 157

Poly(A) nuclease involved in mRNA decay. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CP23|CCR4_CRYNB Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CCR4 PE=3 SV=1

 Score =  107 bits (266), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 79/116 (68%), Gaps = 1/116 (0%)

Query: 39  VKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYL 98
           +K LS  L+ FTH+T+LY+N N LT +   IS L  L  LD + N+L  +PSEIG L  L
Sbjct: 244 LKRLSTALFSFTHVTSLYINHNALTSIPSAISSLRQLTLLDATGNELSTIPSEIGVLSKL 303

Query: 99  RELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD 154
           ++L L +NNL TLP+ELG L+Q+  LG+ GNP++ DY K   E +GT+ L++YL D
Sbjct: 304 KDLLLFDNNLTTLPFELGTLYQLDCLGIDGNPMNADYRKKLVE-DGTRGLITYLRD 358

Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3'-5' RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
345486629	560	PREDICTED: CCR4-NOT transcription comple	0.885	0.248	0.645	1e-44
350398118	163	PREDICTED: CCR4-NOT transcription comple	0.885	0.852	0.652	3e-44
380018055	547	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.885	0.254	0.645	6e-44
340720404	836	PREDICTED: CCR4-NOT transcription comple	0.885	0.166	0.645	8e-44
312371132	1435	hypothetical protein AND_22617 [Anophele	0.764	0.083	0.7	9e-44
328782365	168	PREDICTED: CCR4-NOT transcription comple	0.885	0.827	0.638	4e-43
383847523	172	PREDICTED: CCR4-NOT transcription comple	0.885	0.808	0.645	4e-43
307206315	163	CCR4-NOT transcription complex subunit 6	0.885	0.852	0.631	4e-42
242007260	182	conserved hypothetical protein [Pediculu	0.770	0.664	0.685	2e-41
24649579	567	twin, isoform C [Drosophila melanogaster	0.764	0.211	0.683	4e-41

>gi|345486629|ref|XP_001605640.2| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Nasonia vitripennis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 115/141 (81%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP++WQ THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 32  MSTEDANSGKKSYWPELEITGSIRNLSPNVWQLTHLTALYLNDNSLQRIPSEIGRLVNLR 91

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYL+EL LN N LR LPYELGKLFQ+Q+LGLHGNPLSKD M
Sbjct: 92  ALDLSSNKLRSLPAELGDLIYLKELLLNQNFLRVLPYELGKLFQLQVLGLHGNPLSKDVM 151

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 152 TLYGEPSGTHKLLSYMLDNLQ 172

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398118|ref|XP_003485093.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform 1 [Bombus impatiens] gi|350398121|ref|XP_003485094.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform 2 [Bombus impatiens]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 115/141 (81%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LWQ THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 21  MSTEDANSGKKSYWPELEITGSIRNLSPNLWQMTHLTALYLNDNSLQRIPSEIGRLVNLR 80

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
           TLD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+ M
Sbjct: 81  TLDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEIM 140

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 141 ALYGEPSGTHKLLSYMLDNLQ 161

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018055|ref|XP_003692952.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like [Apis florea]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 114/141 (80%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LWQ THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 21  MSTEDANSGKKSYWPELEITGSIRNLSPNLWQLTHLTALYLNDNSLQRIPSEIGRLVNLR 80

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+Y 
Sbjct: 81  ALDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEYW 140

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 141 XLYGEPSGTHKLLSYMLDNLQ 161

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720404|ref|XP_003398629.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Bombus terrestris]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 114/141 (80%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LWQ THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 21  MSTEDANSGKKSYWPELEITGSIRNLSPNLWQLTHLTALYLNDNSLQRIPSEIGRLVNLR 80

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+ M
Sbjct: 81  ALDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEIM 140

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 141 ALYGEPSGTHKLLSYMLDNLQ 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371132|gb|EFR19392.1| hypothetical protein AND_22617 [Anopheles darlingi]

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/120 (70%), Positives = 99/120 (82%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G+V+NLSP LW+F HLTAL++NDN LTRL   I  L NLRTLD+S NKLR LP+E+G+LI
Sbjct: 66  GSVRNLSPTLWKFEHLTALFLNDNCLTRLPLQIGHLCNLRTLDLSANKLRSLPAELGELI 125

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LNNN LR LPYELGKLF + +LGLHGNPL KD + IYNEPNGT KLL+Y+LD+L
Sbjct: 126 QLRELLLNNNYLRVLPYELGKLFNLHVLGLHGNPLGKDVLSIYNEPNGTSKLLTYMLDNL 185

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782365|ref|XP_396628.3| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Apis mellifera]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 114/141 (80%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LWQ THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 21  MSTEDANSGKKSYWPELEITGSIRNLSPNLWQLTHLTALYLNDNSLQRIPSEIGRLVNLR 80

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+ +
Sbjct: 81  ALDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEIL 140

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 141 ALYGEPSGTHKLLSYMLDNLQ 161

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847523|ref|XP_003699402.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Megachile rotundata]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 113/141 (80%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LWQ THLTALY+NDN+L R+  +I  L NLR
Sbjct: 27  MSTEDANSGKKSYWPELEITGSIRNLSPNLWQLTHLTALYLNDNSLQRIPPEIGRLANLR 86

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+ M
Sbjct: 87  ALDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEVM 146

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP+GT KLLSY+LD+LQ
Sbjct: 147 ALYGEPSGTHKLLSYMLDNLQ 167

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206315|gb|EFN84372.1| CCR4-NOT transcription complex subunit 6-like [Harpegnathos saltator]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 19  LRTLDISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLR 76
           + T D ++ K  Y P  EI G+++NLSP+LW  THLTALY+NDN+L R+  +I  L+NLR
Sbjct: 21  MSTEDANSGKKSYWPELEITGSIRNLSPNLWHLTHLTALYLNDNSLQRIPPEIGRLVNLR 80

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
            LD+S+NKLR LP+E+GDLIYLREL LN N LR LPYELGKLFQ+Q+LGL GNPLSK+ M
Sbjct: 81  ALDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELGKLFQLQVLGLQGNPLSKEVM 140

Query: 137 KIYNEPNGTQKLLSYLLDSLQ 157
            +Y EP GT KLL+Y+LD+LQ
Sbjct: 141 ALYGEPAGTNKLLTYMLDNLQ 161

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007260|ref|XP_002424460.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507860|gb|EEB11722.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 105/121 (86%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G+++NLS +LWQ + LT+LY+NDN L+RL GDI+ L NLRTLD+SNNKLR LP+E+G+LI
Sbjct: 60  GSIRNLSSNLWQLSFLTSLYLNDNCLSRLPGDIAKLTNLRTLDLSNNKLRSLPAELGELI 119

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
           YLREL LNNN LR LPYELGKLF + +LGLHGNPL+KD + +Y EPNGTQKLL+Y+LD+L
Sbjct: 120 YLRELLLNNNYLRVLPYELGKLFHLHVLGLHGNPLNKDVLALYGEPNGTQKLLTYMLDNL 179

Query: 157 Q 157
           +
Sbjct: 180 R 180

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24649579|ref|NP_732964.1| twin, isoform C [Drosophila melanogaster] gi|23172140|gb|AAN13986.1| twin, isoform C [Drosophila melanogaster] gi|33589482|gb|AAQ22508.1| LD39302p [Drosophila melanogaster] gi|220950318|gb|ACL87702.1| twin-PA [synthetic construct]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 101/120 (84%)

Query: 37  GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI 96
           G V+N+SP LW+F HLTALY+NDN L RL  D+ +L +LRTLD+S+NKLR LP+E+G+LI
Sbjct: 61  GCVRNISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAELGELI 120

Query: 97  YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
            LREL LNNN LR LPYE+GKLF + ILGL GNPL K++M IYNEPNGTQKLL+Y+LD+L
Sbjct: 121 QLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNEPNGTQKLLTYMLDNL 180

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
FB|FBgn0011725	567	twin "twin" [Drosophila melano	0.853	0.236	0.558	9.1e-36
UNIPROTKB|E1C5L3	549	CNOT6L "Uncharacterized protei	0.853	0.244	0.5	8.4e-31
RGD|1309128	553	Cnot6l "CCR4-NOT transcription	0.853	0.242	0.492	5.3e-30
MGI|MGI:2443154	555	Cnot6l "CCR4-NOT transcription	0.853	0.241	0.492	5.4e-30
UNIPROTKB|D6RGK9	163	CNOT6L "CCR4-NOT transcription	0.853	0.822	0.477	1.6e-29
UNIPROTKB|A6QR51	557	CNOT6 "CNOT6 protein" [Bos tau	0.840	0.236	0.481	3.4e-29
UNIPROTKB|Q96LI5	555	CNOT6L "CCR4-NOT transcription	0.853	0.241	0.477	5.5e-29
UNIPROTKB|F1RYS2	557	CNOT6L "Uncharacterized protei	0.853	0.240	0.477	5.6e-29
UNIPROTKB|Q9ULM6	557	CNOT6 "CCR4-NOT transcription	0.840	0.236	0.473	9.3e-29
UNIPROTKB|E1C678	557	CNOT6 "Uncharacterized protein	0.840	0.236	0.473	1.2e-28

FB|FBgn0011725 twin "twin" [Drosophila melanogaster (taxid:7227)]

 Score = 387 (141.3 bits), Expect = 9.1e-36, P = 9.1e-36
 Identities = 76/136 (55%), Positives = 97/136 (71%)

Query:    23 DIS-NNKLRYLPSEI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             DI+   K  +   EI G V+N+SP LW+F HLTALY+NDN L RL  D+ +L +LRTLD+
Sbjct:    45 DIAAGKKTNWSGLEITGCVRNISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLRTLDL 104

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+LI               PYE+GKLF + ILGL GNPL K++M IYN
Sbjct:   105 SSNKLRSLPAELGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYN 164

Query:   141 EPNGTQKLLSYLLDSL 156
             EPNGTQKLL+Y+LD+L
Sbjct:   165 EPNGTQKLLTYMLDNL 180

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1C5L3 CNOT6L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 8.4e-31, P = 8.4e-31
 Identities = 68/136 (50%), Positives = 96/136 (70%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDNNLTR+  DI+ L NL  LD+
Sbjct:    22 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNNLTRIPPDIAKLHNLVYLDL 81

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D + +Y 
Sbjct:    82 SSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILSLYQ 141

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+Y+LD+L
Sbjct:   142 DPDGTRKLLNYMLDNL 157

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IEA

RGD|1309128 Cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Rattus norvegicus (taxid:10116)]

 Score = 336 (123.3 bits), Expect = 5.3e-30, P = 5.3e-30
 Identities = 67/136 (49%), Positives = 95/136 (69%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDNNL R+  DI+ L NL  LD+
Sbjct:    25 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNNLARIPPDIAKLHNLVYLDL 84

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D M +Y 
Sbjct:    85 SSNKLRSLPAELGNMVSLRELLLNDNYLRVLPYELGRLFQLQTLGLTGNPLSQDIMSLYQ 144

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+++LD+L
Sbjct:   145 DPDGTRKLLNFMLDNL 160

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA;ISO

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0061157 "mRNA destabilization" evidence=IEA;ISO

MGI|MGI:2443154 Cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 5.4e-30, P = 5.4e-30
 Identities = 67/136 (49%), Positives = 95/136 (69%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDNNL R+  DI+ L NL  LD+
Sbjct:    27 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNNLARIPPDIAKLHNLVYLDL 86

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D M +Y 
Sbjct:    87 SSNKLRSLPAELGNMVSLRELLLNDNYLRVLPYELGRLFQLQTLGLTGNPLSQDIMSLYQ 146

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+++LD+L
Sbjct:   147 DPDGTRKLLNFMLDNL 162

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IMP

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IMP

UNIPROTKB|D6RGK9 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 65/136 (47%), Positives = 95/136 (69%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDN L+R+  DI+ L NL  LD+
Sbjct:    27 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDL 86

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D + +Y 
Sbjct:    87 SSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILNLYQ 146

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+++LD+L
Sbjct:   147 DPDGTRKLLNFMLDNL 162

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IEA

UNIPROTKB|A6QR51 CNOT6 "CNOT6 protein" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 64/133 (48%), Positives = 94/133 (70%)

Query:    25 SNNKLRYLPSEI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83
             +  K  ++  EI G V++LS  LW  THLTALY++DN+L+R+  DI+ L NL  LD+S+N
Sbjct:    25 NGKKSHWVELEISGKVRSLSSSLWSLTHLTALYLSDNSLSRIPSDIAKLHNLVYLDLSSN 84

Query:    84 KLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143
             K+R LP+E+G+++               P+ELGKLFQ+Q LGL GNPL++D + +Y EP+
Sbjct:    85 KIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYLEPD 144

Query:   144 GTQKLLSYLLDSL 156
             GT++LL+YLLD+L
Sbjct:   145 GTRRLLNYLLDNL 157

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

UNIPROTKB|Q96LI5 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 5.5e-29, P = 5.5e-29
 Identities = 65/136 (47%), Positives = 95/136 (69%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDN L+R+  DI+ L NL  LD+
Sbjct:    27 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDL 86

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D + +Y 
Sbjct:    87 SSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILNLYQ 146

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+++LD+L
Sbjct:   147 DPDGTRKLLNFMLDNL 162

GO:0046872 "metal ion binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1RYS2 CNOT6L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 327 (120.2 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 65/136 (47%), Positives = 95/136 (69%)

Query:    23 DISNNKLRYLPS-EI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80
             +++N K  +    EI G V++LS  LW  THLTAL++NDN L+R+  DI+ L NL  LD+
Sbjct:    27 EVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDL 86

Query:    81 SNNKLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
             S+NKLR LP+E+G+++               PYELG+LFQ+Q LGL GNPLS+D + +Y 
Sbjct:    87 SSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILNLYQ 146

Query:   141 EPNGTQKLLSYLLDSL 156
             +P+GT+KLL+++LD+L
Sbjct:   147 DPDGTRKLLNFMLDNL 162

GO:0061157 "mRNA destabilization" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

UNIPROTKB|Q9ULM6 CNOT6 "CCR4-NOT transcription complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 9.3e-29, P = 9.3e-29
 Identities = 63/133 (47%), Positives = 93/133 (69%)

Query:    25 SNNKLRYLPSEI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83
             +  K  +   EI G V++LS  LW  THLTAL+++DN+L+R+  DI+ L NL  LD+S+N
Sbjct:    25 NGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSN 84

Query:    84 KLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143
             K+R LP+E+G+++               P+ELGKLFQ+Q LGL GNPL++D + +Y EP+
Sbjct:    85 KIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYQEPD 144

Query:   144 GTQKLLSYLLDSL 156
             GT++LL+YLLD+L
Sbjct:   145 GTRRLLNYLLDNL 157

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0035195 "gene silencing by miRNA" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=IDA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|E1C678 CNOT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 63/133 (47%), Positives = 93/133 (69%)

Query:    25 SNNKLRYLPSEI-GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83
             +  K  +   EI G V++LS  LW  THLTAL+++DN+L+R+  DI+ L NL  LD+S+N
Sbjct:    25 NGKKSHWAELEISGKVRSLSSSLWTLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSN 84

Query:    84 KLRYLPSEIGDLIYXXXXXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143
             K+R LP+E+G+++               P+ELGKLFQ+Q LGL GNPL++D + +Y EP+
Sbjct:    85 KIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYQEPD 144

Query:   144 GTQKLLSYLLDSL 156
             GT++LL+YLLD+L
Sbjct:   145 GTRRLLNYLLDNL 157

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VEG6	CNO6L_MOUSE	3, ., 1, ., -, ., -	0.5661	0.8535	0.2414	yes	N/A
A2BHJ4	CNO6L_DANRE	3, ., 1, ., -, ., -	0.5639	0.8407	0.2361	yes	N/A
Q9ULM6	CNOT6_HUMAN	3, ., 1, ., -, ., -	0.5916	0.7643	0.2154	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	1e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.002
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.003
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +DN +  L   +  L NL+ LD+S N L  LP  +  + NL            L ++ N 
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL----------NNLDLSGNK 197

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           ++ L  +I LL  L  LD+SNN +  L S + +L  L  L L+NN L  LP  +G L  +
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257

Query: 122 QILGLHGNPLS 132
           + L L  N +S
Sbjct: 258 ETLDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N N L     ++  L NL +LD+ NN +  +P  IG +K+         +L  L ++DN 
Sbjct: 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS---------NLKELDLSDNK 151

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +  L   +  L NL+ LD+S N L  LP  + +L  L  L L+ N +  LP E+  L  +
Sbjct: 152 IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Query: 122 QILGLHGNPLSKDYMKIYNEPN 143
           + L L  N + +    + N  N
Sbjct: 212 EELDLSNNSIIELLSSLSNLKN 233

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 11/132 (8%)

Query: 1   MNDNNLTRLSGDISLL-INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +++NN+T +   I LL  NL+ LD+S+NK+  LPS +  + NL            L ++ 
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN----------LDLSF 172

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           N+L+ L   +S L NL  LD+S NK+  LP EI  L  L EL L+NN++  L   L  L 
Sbjct: 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK 232

Query: 120 QIQILGLHGNPL 131
            +  L L  N L
Sbjct: 233 NLSGLELSNNKL 244

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 65  LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQ 122
           +  DIS L +L+++++S N +R  +P  +G +  L  L L+ N+   ++P  LG+L  ++
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 123 ILGLHGNPLS 132
           IL L+GN LS
Sbjct: 494 ILNLNGNSLS 503

Length = 623

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 16/117 (13%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA-------L 55
           DNNLT L    +L   LRTL++S N+L  LP     +  LS      THL A       L
Sbjct: 231 DNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 287

Query: 56  YMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
           ++  N LT L     L   L+ L +S+N+L  LP+   +L    +L   NN L +LP
Sbjct: 288 WIFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSELC---KLWAYNNQLTSLP 338

Length = 788

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 21/129 (16%)

Query: 4   NNLTRLSGDI--------SLLINLRTLDISNNKLRYLPSEI-GAVKNLSPDLWQFTHLTA 54
           NN T L   I         +   + TL + NN+L+ LP  + G +K L  +  Q T + A
Sbjct: 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPA 237

Query: 55  --------LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
                   + ++ N +T L     L   L++LD+ +NK+  LP  + +   LR L + +N
Sbjct: 238 TLPDTIQEMELSINRITELPE--RLPSALQSLDLFHNKISCLPENLPE--ELRYLSVYDN 293

Query: 107 NLRTLPYEL 115
           ++RTLP  L
Sbjct: 294 SIRTLPAHL 302

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 19/138 (13%)

Query: 1   MNDNNLTRLSGDIS--LLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYM 57
           +++NN T   G I    + NL TLD+SNN L   +P++IG+          F+ L  L +
Sbjct: 125 LSNNNFT---GSIPRGSIPNLETLDLSNNMLSGEIPNDIGS----------FSSLKVLDL 171

Query: 58  NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYE 114
             N L  ++   ++ L +L  L +++N+L   +P E+G +  L+ + L  NNL   +PYE
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231

Query: 115 LGKLFQIQILGLHGNPLS 132
           +G L  +  L L  N L+
Sbjct: 232 IGGLTSLNHLDLVYNNLT 249

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 16/118 (13%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
              +   L+  +    +L+ L+++NN +         ++ L+  L    +L  L +N+N 
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGD-----AGIRALAEGLKANCNLEVLDLNNNG 204

Query: 62  LTR-----LSGDISLLINLRTLDISNNKLR------YLPSEIGDLIYLRELCLNNNNL 108
           LT      L+  ++ L +L  L++ +N L          + +   I L  L L+ N++
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 36/156 (23%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
           +N LT L    +L   L+ L +S+N+L  LP+       L  +L++      L+  +N L
Sbjct: 331 NNQLTSLP---TLPSGLQELSVSDNQLASLPT-------LPSELYK------LWAYNNRL 374

Query: 63  TRLSGDISLLINLRTLDISNNKLR---YLPSEIGDLIY--------------LRELCLNN 105
           T L    +L   L+ L +S N+L     LPSE+ +L+               L  L +  
Sbjct: 375 TSLP---ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR 431

Query: 106 NNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141
           N L  LP  L  L     + L GNPLS+  ++   E
Sbjct: 432 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 51  HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
           H+T L + DNNLT L    +L   LRTL++S N+L  LP     L+   EL + +N L  
Sbjct: 223 HITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLL---ELSIFSNPLTH 276

Query: 111 LPYELGKLFQIQILG 125
           LP     L ++ I G
Sbjct: 277 LPALPSGLCKLWIFG 291

Length = 788

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 19  LRTLDISNNKLRYLPSEIGA------VKNLSPDLWQFT---HLTALYMNDNNLTRLSGDI 69
           LR L + +N +R LP+ + +      V++ S      T    L  L   +N LT L    
Sbjct: 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-- 342

Query: 70  SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           SL   L+ LD+S N++  LP  +   I    L ++ N L  LP  L    QI
Sbjct: 343 SLPPELQVLDVSKNQITVLPETLPPTI--TTLDVSRNALTNLPENLPAALQI 392

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG0617|consensus	264		99.79
KOG0617|consensus	264		99.64
KOG0472|consensus	565		99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.59
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.57
KOG0472|consensus	565		99.56
KOG4194|consensus	873		99.55
KOG4194|consensus	873		99.54
KOG0444|consensus	1255		99.54
KOG0532|consensus	722		99.54
KOG0444|consensus	1255		99.47
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
KOG1259|consensus	490		99.32
KOG0618|consensus	1081		99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.25
KOG0532|consensus	722		99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.16
KOG0618|consensus	1081		99.13
KOG4237|consensus	498		99.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.06
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.01
KOG4579|consensus	177		99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
PLN03150	623	hypothetical protein; Provisional	98.98
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.95
PLN03150	623	hypothetical protein; Provisional	98.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG1259|consensus	490		98.86
KOG4579|consensus	177		98.85
KOG4237|consensus	498		98.78
KOG1859|consensus	1096		98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.49
KOG4658|consensus	889		98.46
KOG4658|consensus	889		98.41
KOG3207|consensus	505		98.36
KOG0531|consensus	414		98.34
KOG1859|consensus	1096		98.3
KOG1644|consensus	233		98.23
KOG0531|consensus	414		98.23
KOG3207|consensus	505		98.08
KOG1644|consensus	233		98.07
KOG1909|consensus	382		97.97
KOG1909|consensus	382		97.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.6
KOG3665|consensus	699		97.56
KOG2739|consensus	260		97.56
KOG2739|consensus	260		97.47
KOG3665|consensus	699		97.42
KOG2123|consensus	388		97.41
KOG2982|consensus	418		97.26
KOG0473|consensus	326		97.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.99
KOG2120|consensus	419		96.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.85
KOG2982|consensus	418		96.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.72
PRK15386	426	type III secretion protein GogB; Provisional	96.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.58
KOG2120|consensus	419		96.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.33
KOG2123|consensus	388		96.21
KOG0473|consensus	326		94.8
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.09
smart00370	26	LRR Leucine-rich repeats, outliers.	94.09
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.1
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.84
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.75
KOG4308|consensus	478		87.6
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.05
KOG3864|consensus	221		85.71
KOG1947|consensus	482		80.04

>KOG0617|consensus

Probab=99.79  E-value=2.2e-21  Score=125.19  Aligned_cols=137  Identities=33%  Similarity=0.538  Sum_probs=122.4

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC-------------CChhhhcCcccceEecccCCCc--cc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN-------------LSPDLWQFTHLTALYMNDNNLT--RL   65 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~L~~l~l~~~~~~--~~   65 (157)
                      +|+|.++-+|+.++++.+|+.|++.+|+++++|..++++++             +|..|..++.|+.+++..|++.  .+
T Consensus        40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l  119 (264)
T KOG0617|consen   40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL  119 (264)
T ss_pred             cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC
Confidence            58899999999999999999999999999999998876654             4888999999999999999987  56


Q ss_pred             cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049          66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~  137 (157)
                      |..|..+..|+.|.+++|.+..+|..++.+++|+++.+++|.+-++|++++.+.+|+++++.+|+++-.+|+
T Consensus       120 pgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  120 PGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             CcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence            888888889999999999999999999999999999999999999999999999999999988888755444

>KOG0617|consensus

Probab=99.64  E-value=2e-17  Score=107.00  Aligned_cols=152  Identities=34%  Similarity=0.566  Sum_probs=134.5

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC---------------CChhhhcCcccceEecccCCCccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN---------------LSPDLWQFTHLTALYMNDNNLTRL   65 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~---------------~~~~~~~~~~L~~l~l~~~~~~~~   65 (157)
                      +++|+|+.+|..++.+++|+.|++..|++..+|.++++++.               +|-.|..+..|..+++.+|-+..+
T Consensus        63 ~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l  142 (264)
T KOG0617|consen   63 LSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL  142 (264)
T ss_pred             cccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence            46899999999999999999999999999999998887654               466777888899999999999999


Q ss_pred             cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcC---CCcEEEccCCCCCChhHHhhcCC
Q psy3049          66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF---QIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~---~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      |+..+.+++|+.|.+.+|.+-.+|..++.+..|+++.+.+|+++.+|++++++.   +-+.+.+..|++...+++.|.  
T Consensus       143 p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~--  220 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFL--  220 (264)
T ss_pred             ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHH--
Confidence            999999999999999999988899999999999999999999999999877654   345666788999999999997  


Q ss_pred             CChHHHHHHHHh
Q psy3049         143 NGTQKLLSYLLD  154 (157)
Q Consensus       143 ~~l~~l~~~~~~  154 (157)
                      .+..+.++|++.
T Consensus       221 lG~shV~~yirt  232 (264)
T KOG0617|consen  221 LGISHVIDYIRT  232 (264)
T ss_pred             hhHHHHHHHHhh
Confidence            578888888754

>KOG0472|consensus

Probab=99.62  E-value=3.6e-16  Score=112.56  Aligned_cols=143  Identities=32%  Similarity=0.454  Sum_probs=122.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      +.|.+..+|..++.++++..|++++|.+.++|.+.          +.+-.|+.++++.|.+..+|........++.+-.+
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~----------~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM----------GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLAS  489 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhhhcchhh----------hhhhhhheecccccccccchHHHhhHHHHHHHHhc
Confidence            56677777777889999999999999999888764          45556999999999998888877777788888777


Q ss_pred             CCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHhhc
Q psy3049          82 NNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL  156 (157)
Q Consensus        82 ~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~~~  156 (157)
                      +|+++.++. .+..+.+|..+|+.+|.+..+|+.+++|.+++++.+++|+|.-....++  |.++-+++.|.++..
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL--mkgT~aiL~ylrdrI  563 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL--MKGTAAILSYLRDRI  563 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHh--ccChHHHHHHhcccC
Confidence            799998865 5999999999999999999999999999999999999999995544444  588999999988764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.59  E-value=4.1e-15  Score=120.92  Aligned_cols=145  Identities=28%  Similarity=0.427  Sum_probs=78.5

Q ss_pred             CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-c
Q psy3049           2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT-R   64 (157)
Q Consensus         2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~-~   64 (157)
                      ++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+.              .+|+.+..+++|+++++++|.++ .
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence            455555 45555666777777777776664 3444333221              12445555556666666666555 3


Q ss_pred             ccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049          65 LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      +|..++.+++|++|++.+|.++ .+|..+..+++|+.|++.+|.+. .+|..+.++++|+++++++|.+.+.+|..+..+
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            4445555556666666655554 34555555555555555555554 344445555555555555555555555555444


Q ss_pred             CChH
Q psy3049         143 NGTQ  146 (157)
Q Consensus       143 ~~l~  146 (157)
                      ..++
T Consensus       308 ~~L~  311 (968)
T PLN00113        308 QNLE  311 (968)
T ss_pred             CCCc
Confidence            4443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.57  E-value=8.1e-15  Score=119.20  Aligned_cols=146  Identities=27%  Similarity=0.361  Sum_probs=90.2

Q ss_pred             CCCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-
Q psy3049           1 MNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT-   63 (157)
Q Consensus         1 l~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~-   63 (157)
                      +++|.++ .+|..+.++++|+.|++++|.+. .+|+.++.+.              .+|..+..+++|++|++++|.++ 
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            3556665 45666777777777777777765 3454443322              23555666777777777777765 


Q ss_pred             cccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          64 RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        64 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      .+|..++.+++|+.|++.+|.++ .+|..+..+++|+.+++++|.+. .+|..+.++++|+++++++|.+.+..+..+..
T Consensus       251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  330 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS  330 (968)
T ss_pred             ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence            34556666667777777766664 45556666666666666666665 44555566666666666666666555555555


Q ss_pred             CCChH
Q psy3049         142 PNGTQ  146 (157)
Q Consensus       142 ~~~l~  146 (157)
                      ++.++
T Consensus       331 l~~L~  335 (968)
T PLN00113        331 LPRLQ  335 (968)
T ss_pred             CCCCC
Confidence            44443

>KOG0472|consensus

Probab=99.56  E-value=6.9e-16  Score=111.12  Aligned_cols=108  Identities=36%  Similarity=0.561  Sum_probs=72.8

Q ss_pred             hhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcE
Q psy3049          45 DLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI  123 (157)
Q Consensus        45 ~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~  123 (157)
                      +|.++..|..+.+..|++..+|... ..+.++..||+.+|+++++|..++-+.+++.+|+++|.++.+|..++++ .|+.
T Consensus       223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF  301 (565)
T ss_pred             CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence            3444444444444444444444322 2566677777777777777777777777777777777777777777777 7777


Q ss_pred             EEccCCCCCChhHHhhcCCCChHHHHHHHHhh
Q psy3049         124 LGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDS  155 (157)
Q Consensus       124 l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~~  155 (157)
                      +.+.+|++...-.+++.  ++++++++|++.+
T Consensus       302 L~leGNPlrTiRr~ii~--~gT~~vLKyLrs~  331 (565)
T KOG0472|consen  302 LALEGNPLRTIRREIIS--KGTQEVLKYLRSK  331 (565)
T ss_pred             hhhcCCchHHHHHHHHc--ccHHHHHHHHHHh
Confidence            77777777766667776  7888888888764

>KOG4194|consensus

Probab=99.55  E-value=5.3e-16  Score=116.24  Aligned_cols=138  Identities=25%  Similarity=0.343  Sum_probs=112.4

Q ss_pred             CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049           2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~   79 (157)
                      ..|.|..+.+. |..|.++++|++..|+++.+.+..         +.++.+|+.|+++.|.++.+ +..|...++|+.|+
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~---------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW---------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhccc---------ccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence            45777777644 777888888888888888776642         66889999999999999976 46788899999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHh---hcCCCChHHH
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKI---YNEPNGTQKL  148 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~l~~l  148 (157)
                      ++.|+++.+++ .+..+..|+.|+++.|.+..+.+. |..+.+|+.|||++|.+++.+++.   |.++++++++
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            99999999865 788889999999999999988755 888999999999999998776654   5555555554

>KOG4194|consensus

Probab=99.54  E-value=1.3e-15  Score=114.17  Aligned_cols=139  Identities=24%  Similarity=0.363  Sum_probs=110.2

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L   78 (157)
                      +|.|.|..|..+ +..+++|++|+++.|+++++++.         +|..+..|+.|+++.|.++.+.. .+..+.+|+.|
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~---------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG---------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             cchhhhheeecchhhhcccceeEeccccccccCChh---------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            466777766533 67777777777777777777664         46677788888888888886643 46678899999


Q ss_pred             eccCCCCC----CCChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHH
Q psy3049          79 DISNNKLR----YLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLL  149 (157)
Q Consensus        79 ~l~~~~~~----~~~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~  149 (157)
                      ++.+|.++    .-...+..+++|+.|.+-+|+++.||+ .|.+++.|++|||.+|.+...-++.|..| .++++.
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            99999877    223357778999999999999999985 58999999999999999999999999887 777773

>KOG0444|consensus

Probab=99.54  E-value=5.5e-16  Score=117.41  Aligned_cols=147  Identities=33%  Similarity=0.429  Sum_probs=75.5

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcce-----ecCcc--cc---------CCCCCChhhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLR-----YLPSE--IG---------AVKNLSPDLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~-----~~~~~--~~---------~~~~~~~~~~~~~~L~~l~l~~~~~~~   64 (157)
                      ||+|++..+|+.++.+.+|+.|++++|.+.     .+|+-  +.         .+..+|.++..+.+|.-++++.|.+..
T Consensus       157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~  236 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI  236 (1255)
T ss_pred             cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence            456666666666666666666666666543     22220  00         011234444444445555555555544


Q ss_pred             cccccccccc-----------------------ccEEeccCCCCCCCChhhhCccccceEEcCCCccc--CcchhhcCcC
Q psy3049          65 LSGDISLLIN-----------------------LRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR--TLPYELGKLF  119 (157)
Q Consensus        65 ~~~~~~~~~~-----------------------L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~--~l~~~~~~~~  119 (157)
                      +|.-+.++.+                       +++|++++|+++.+|.+++.++.|+.|.+.+|++.  .+|+.|+.+.
T Consensus       237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            4444444444                       44555555555555555555555555555555444  4555555555


Q ss_pred             CCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049         120 QIQILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus       120 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      +|+.+...+|.+. ..|+.+++|..++++
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            5555555555443 456666666666655

>KOG0532|consensus

Probab=99.54  E-value=2.1e-16  Score=117.71  Aligned_cols=148  Identities=28%  Similarity=0.461  Sum_probs=128.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccC------------CCCCChhhhcCcccceEecccCCCccccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA------------VKNLSPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~------------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      +.|.|..+|..++.+..|+.++|+.|+++.+|..+..            +..+|+.+...++|..++.+.|.+..+|..+
T Consensus       106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql  185 (722)
T KOG0532|consen  106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL  185 (722)
T ss_pred             HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHh
Confidence            4677777887788888888888888888888876643            3446777777788999999999999999999


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHH
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLL  149 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~  149 (157)
                      +.+.+|+.+.+.+|++..+|+.+.. -.|..||++.|++..+|-.|.+|..|+++-|.+|++...++.++.  .+..+||
T Consensus       186 ~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~--kGkVHIF  262 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE--KGKVHIF  262 (722)
T ss_pred             hhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh--ccceeee
Confidence            9999999999999999999998884 457789999999999999999999999999999999999998886  8888998


Q ss_pred             HHH
Q psy3049         150 SYL  152 (157)
Q Consensus       150 ~~~  152 (157)
                      +|+
T Consensus       263 KyL  265 (722)
T KOG0532|consen  263 KYL  265 (722)
T ss_pred             eee
Confidence            886

>KOG0444|consensus

Probab=99.47  E-value=5e-15  Score=112.33  Aligned_cols=142  Identities=25%  Similarity=0.385  Sum_probs=107.4

Q ss_pred             CCCccchhhhcccCCCEEEecCCcceecCccccCCC---------------CCChhhhcCcccceEecccCCCccccccc
Q psy3049           5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK---------------NLSPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      .+..+|.+++.+.+|++|.++.|++..+..++++++               .+|+.+.++.-|+.+++++|++..+|..+
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L  122 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL  122 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh
Confidence            344566666666666666666666655544443332               25778888888999999999999999888


Q ss_pred             cccccccEEeccCCCCCCCChh-hhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          70 SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ..-.++..|++++|+|..+|.. +.++..|..|++++|++..+|+.+.++..|++|+|++|++.-.--..+..|.++.
T Consensus       123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence            8888889999999999999864 5578888999999999999999999999999999999987644333443344443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.44  E-value=3.3e-13  Score=88.90  Aligned_cols=118  Identities=29%  Similarity=0.504  Sum_probs=42.2

Q ss_pred             CCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccccccccccccEEeccC
Q psy3049           4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISN   82 (157)
Q Consensus         4 n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~   82 (157)
                      +-|.+++. +.+...+++|++++|.|+.+..           +. .+.+|+.|++++|.++.+. .+..+..|+.|++++
T Consensus         7 ~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~-----------L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen    7 NMIEQIAQ-YNNPVKLRELNLRGNQISTIEN-----------LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN   73 (175)
T ss_dssp             ------------------------------S-------------TT-TT--EEE-TTS--S--T-T----TT--EEE--S
T ss_pred             cccccccc-cccccccccccccccccccccc-----------hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC
Confidence            44455443 3455578899999999987632           22 3567899999999998775 466788999999999


Q ss_pred             CCCCCCChhh-hCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCCh
Q psy3049          83 NKLRYLPSEI-GDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        83 ~~~~~~~~~~-~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      |.++.+...+ ..+++|++|.+++|+|..+.  ..+..+++|+.+++.+|+++..
T Consensus        74 N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   74 NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            9998887655 35789999999999988654  3477889999999999988643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=9.7e-13  Score=86.67  Aligned_cols=115  Identities=28%  Similarity=0.386  Sum_probs=54.8

Q ss_pred             CCCCCCCccchhhh-cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEE
Q psy3049           1 MNDNNLTRLSGDIS-LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L   78 (157)
                      |.+|.|+.+. .++ .+.+|+.|++++|.++.++.           +..++.|++|++++|.++.+...+ ..+++|+.|
T Consensus        26 L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-----------l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   26 LRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-----------LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -----------S--TT-TT--EEE-TTS--S--TT---------------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccc-chhhhhcCCCEEECCCCCCccccC-----------ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            4678888875 355 58899999999999998752           456788999999999999886544 468999999


Q ss_pred             eccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEcc
Q psy3049          79 DISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLH  127 (157)
Q Consensus        79 ~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~  127 (157)
                      ++++|++..+.  ..+..+++|+.|++.+|.++.-+.    .+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999998663  467889999999999999995543    27889999999753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=4.6e-12  Score=99.87  Aligned_cols=114  Identities=31%  Similarity=0.355  Sum_probs=82.0

Q ss_pred             CCCEEEecCCcceecCccccCCC----------CCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVK----------NLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY   87 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~----------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   87 (157)
                      +|+.|++++|+++.+|.....+.          .+|..   ...|+.|++++|.++.+|..   ..+|+.|++++|.++.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS  416 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC
Confidence            56677777777776654322221          12211   13567777777777766543   3467888888888887


Q ss_pred             CChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          88 LPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        88 ~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +|...   .+|+.|++++|+++.+|..+.+++.+..+++++|++++..+..+.
T Consensus       417 IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        417 LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            77532   467889999999999999999999999999999999999888763

>KOG1259|consensus

Probab=99.32  E-value=3.4e-13  Score=94.50  Aligned_cols=122  Identities=30%  Similarity=0.428  Sum_probs=98.2

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      ||+|.|+.+..++.-.+.++.|+++.|++..+..           +..+++|+.|++++|.++.+..+-.++.+.++|.+
T Consensus       291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-----------La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-----------LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             ccccchhhhhhhhhhccceeEEeccccceeeehh-----------hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            5778888887777778888888888888886643           44667889999999988877666567778888999


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCCh
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ++|.+..+ ..+..+-+|..||+++|+|..+..  .++++|.|+++.|.+|++.+.
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99888655 345677889999999999997764  499999999999999998855

>KOG0618|consensus

Probab=99.31  E-value=4.7e-13  Score=104.77  Aligned_cols=130  Identities=28%  Similarity=0.330  Sum_probs=107.2

Q ss_pred             CCCCCCc-cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           2 NDNNLTR-LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      .+|.+++ .-+.+.++++|+.|++++|+++.+|+.         .+.++..|+.|++++|.++.+|.....+..|++|..
T Consensus       367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas---------~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS---------KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             hcCcccccchhhhccccceeeeeecccccccCCHH---------HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            4677774 224578999999999999999999885         367888999999999999999988889999999999


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      .+|.+..+| .+..++.++.+|++.|+++.+-- +....++|++||+++|.........++.
T Consensus       438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~  498 (1081)
T KOG0618|consen  438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKV  498 (1081)
T ss_pred             cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHH
Confidence            999999999 77889999999999999994422 2223389999999999865555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.25  E-value=2.8e-11  Score=95.64  Aligned_cols=60  Identities=28%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             ccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH
Q psy3049          73 INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        73 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      ++|+.|++.+|.++.+|..+.  ++|+.|++++|+++.+|..+.  +.|++|++++|.+...++
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE  384 (754)
T ss_pred             ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence            356666666666666665442  577778888887777776542  577788888887775433

>KOG0532|consensus

Probab=99.17  E-value=7e-13  Score=99.29  Aligned_cols=146  Identities=29%  Similarity=0.446  Sum_probs=114.8

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSG   67 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~   67 (157)
                      ++.|++..+|.+++.+..|..+.+..|++..+|..+..+             ..+|..++.++ |+.+.+++|+++.+|.
T Consensus        82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~  160 (722)
T KOG0532|consen   82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE  160 (722)
T ss_pred             ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc
Confidence            467888888888888888888888888888777765533             23466666666 7888888888888887


Q ss_pred             cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      .++...++..++.+.|.+..+|..++.+.+++.+++++|++..+|.+.. .-.|..||++.|++. .+|-.|..|..|+.
T Consensus       161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchhhhhhhhhee
Confidence            7777778888888888888888888888888888888999888888877 455789999999988 66888888877776


Q ss_pred             HH
Q psy3049         148 LL  149 (157)
Q Consensus       148 l~  149 (157)
                      |.
T Consensus       239 l~  240 (722)
T KOG0532|consen  239 LQ  240 (722)
T ss_pred             ee
Confidence            63

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.16  E-value=2.4e-10  Score=90.47  Aligned_cols=112  Identities=26%  Similarity=0.417  Sum_probs=64.4

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      +++.++.+|..+.  ..++.|++++|.++.+|..+            .++|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       186 ~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l------------~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        186 KILGLTTIPACIP--EQITTLILDNNELKSLPENL------------QGNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             CCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh------------ccCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            4556666665442  35777777777777666542            1256666666666665554322  345666666


Q ss_pred             CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      +|.++.+|..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++|.+.+
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc
Confidence            666665555442  356666666666665555432  356666666665554

>KOG0618|consensus

Probab=99.13  E-value=9e-12  Score=97.76  Aligned_cols=130  Identities=35%  Similarity=0.473  Sum_probs=77.9

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCC------------------C----------------------C
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV------------------K----------------------N   41 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~------------------~----------------------~   41 (157)
                      ..|.+..+|+....++.|+.|++..|.+..+|+.+-..                  +                      .
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence            35778888888888999999999999999888744210                  0                      0


Q ss_pred             CChhhhcCcccceEecccCCCcccccc-ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCC
Q psy3049          42 LSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ  120 (157)
Q Consensus        42 ~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~  120 (157)
                      +.+-+..+++|+.|++++|.++.+|.. +.++..|+.|++++|.++.+|..+..++.|+.|...+|++..+| ++..+++
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence            112333445555555555555544432 34444555555555555555555555555555555555555555 4555666


Q ss_pred             CcEEEccCCCCC
Q psy3049         121 IQILGLHGNPLS  132 (157)
Q Consensus       121 L~~l~l~~n~~~  132 (157)
                      |+.+|++.|.++
T Consensus       454 L~~lDlS~N~L~  465 (1081)
T KOG0618|consen  454 LKVLDLSCNNLS  465 (1081)
T ss_pred             ceEEecccchhh
Confidence            666666666665

>KOG4237|consensus

Probab=99.06  E-value=9.8e-12  Score=89.69  Aligned_cols=124  Identities=23%  Similarity=0.383  Sum_probs=99.8

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEeccc-CCCccccc-cccccccccE
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND-NNLTRLSG-DISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~   77 (157)
                      |..|+|+.||+. |..+++|+.||++.|+|+.+.++         .|.+++.+..+-+-+ |.++.+|. .|+.+..++.
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~---------AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD---------AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchhhcChH---------hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            346889999866 88999999999999999987764         366777766665555 88988874 5788888888


Q ss_pred             EeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCC
Q psy3049          78 LDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        78 L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~  133 (157)
                      |.+.-|++..++ ..+.+++++..|.+-+|.+..++. .+..+..++.+++..|++.+
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc
Confidence            888888888765 478889999999999999998887 47888899999998888543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.06  E-value=7.5e-10  Score=87.62  Aligned_cols=116  Identities=31%  Similarity=0.322  Sum_probs=69.4

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccccc----------
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDIS----------   70 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~----------   70 (157)
                      +++|.++.+|+.+.  ++++.|++..|+++.+|...             ++|++|++++|+++.+|....          
T Consensus       208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp-------------~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N  272 (788)
T PRK15387        208 VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP-------------PELRTLEVSGNQLTSLPVLPPGLLELSIFSN  272 (788)
T ss_pred             cCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCC-------------CCCcEEEecCCccCcccCcccccceeeccCC
Confidence            45677777877654  36777777777777766421             345555555555544432110          


Q ss_pred             -------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhh-------------cCc----CCCcEEEc
Q psy3049          71 -------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-------------GKL----FQIQILGL  126 (157)
Q Consensus        71 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~-------------~~~----~~L~~l~l  126 (157)
                             ....|+.|++.+|.++.+|..   .++|+.|++++|+++.+|...             ..+    .+|++|++
T Consensus       273 ~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL  349 (788)
T PRK15387        273 PLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSV  349 (788)
T ss_pred             chhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEec
Confidence                   123455666666666666542   367888888888887665421             111    25778888


Q ss_pred             cCCCCCCh
Q psy3049         127 HGNPLSKD  134 (157)
Q Consensus       127 ~~n~~~~~  134 (157)
                      ++|.+.+.
T Consensus       350 S~N~Ls~L  357 (788)
T PRK15387        350 SDNQLASL  357 (788)
T ss_pred             CCCccCCC
Confidence            88887764

>PLN03210 Resistant to P

Probab=99.01  E-value=2.2e-09  Score=89.12  Aligned_cols=85  Identities=31%  Similarity=0.421  Sum_probs=52.2

Q ss_pred             hhhhcCcccceEecccCC-CccccccccccccccEEeccCC-CCCCCChhhhCccccceEEcCCC-cccCcchhhcCcCC
Q psy3049          44 PDLWQFTHLTALYMNDNN-LTRLSGDISLLINLRTLDISNN-KLRYLPSEIGDLIYLRELCLNNN-NLRTLPYELGKLFQ  120 (157)
Q Consensus        44 ~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~l~~n-~l~~l~~~~~~~~~  120 (157)
                      ..+..+++|+.++++++. +..+| .+..+++|+.|++.+| .+..+|..+..+++|+.|++++| .+..+|..+ ++++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            334456667777777654 33443 4556677777777776 45566777777777777777765 445665543 4556


Q ss_pred             CcEEEccCCC
Q psy3049         121 IQILGLHGNP  130 (157)
Q Consensus       121 L~~l~l~~n~  130 (157)
                      |+++++++|.
T Consensus       706 L~~L~Lsgc~  715 (1153)
T PLN03210        706 LYRLNLSGCS  715 (1153)
T ss_pred             CCEEeCCCCC
Confidence            6666665554

syringae 6; Provisional

>KOG4579|consensus

Probab=99.00  E-value=5.5e-11  Score=74.45  Aligned_cols=124  Identities=23%  Similarity=0.349  Sum_probs=95.6

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCCCCChhhhCcc
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLI   96 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~   96 (157)
                      .+-.++++.|++..+++...       .+.+...|+.+++++|.+..+|+.+ .+++.++.+++.+|.++.+|..+..++
T Consensus        28 E~h~ldLssc~lm~i~davy-------~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~  100 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVY-------MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP  100 (177)
T ss_pred             HhhhcccccchhhHHHHHHH-------HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH
Confidence            35567888888877666443       2334556888899999998888765 456688899999999999998888899


Q ss_pred             ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHH
Q psy3049          97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLS  150 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~  150 (157)
                      .|+.++++.|.+...|..+..+.++.+|+...|.+.....+.|.  +.+..+.+
T Consensus       101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~--s~~~al~~  152 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFY--SSLPALIK  152 (177)
T ss_pred             HhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhc--cccHHHHH
Confidence            99999999999998888887888899999888887777666553  55555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=6.3e-10  Score=82.59  Aligned_cols=138  Identities=36%  Similarity=0.522  Sum_probs=83.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccC-------------CCCCChhhhcCcccceEecccCCCcccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-------------VKNLSPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      ++|.+..+|..++.+++|+.|+++.|++.+++...+.             +..+|........|+++.+++|.....+..
T Consensus       148 ~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~  227 (394)
T COG4886         148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS  227 (394)
T ss_pred             cccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh
Confidence            4556666655566666666666666666665553210             111222222222344444444433333333


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +..+..+..+.+.+|++..++..+..++.++.+++.+|.++.++. ++...+++++++++|.+...++....
T Consensus       228 ~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             hhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence            344455555555566655556667777788889999998888877 78888899999999888766665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=4.7e-10  Score=61.46  Aligned_cols=58  Identities=41%  Similarity=0.614  Sum_probs=37.8

Q ss_pred             cccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCC
Q psy3049          74 NLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPL  131 (157)
Q Consensus        74 ~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~  131 (157)
                      +|++|++++|.++.+|. .+..+++|+++++++|.++.++. .+.++++|+++++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45666666666666653 45566777777777777776654 366777777777776653

...

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=1.7e-09  Score=84.55  Aligned_cols=88  Identities=31%  Similarity=0.539  Sum_probs=42.3

Q ss_pred             cceEecccCCCc-cccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccC
Q psy3049          52 LTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHG  128 (157)
Q Consensus        52 L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~  128 (157)
                      ++.|++++|.+. .+|..++.+.+|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            344444444444 23444444455555555555443 34444444555555555555554 3444445555555555555


Q ss_pred             CCCCChhHHhh
Q psy3049         129 NPLSKDYMKIY  139 (157)
Q Consensus       129 n~~~~~~~~~~  139 (157)
                      |.+.|.+|..+
T Consensus       500 N~l~g~iP~~l  510 (623)
T PLN03150        500 NSLSGRVPAAL  510 (623)
T ss_pred             CcccccCChHH
Confidence            55554444443

>PLN03210 Resistant to P

Probab=98.96  E-value=1.8e-09  Score=89.62  Aligned_cols=84  Identities=24%  Similarity=0.410  Sum_probs=51.3

Q ss_pred             CChhhhcCcccceEecccCC-CccccccccccccccEEeccCC-CCCCCChhhhCccccceEEcCCCcccCcchhhcCcC
Q psy3049          42 LSPDLWQFTHLTALYMNDNN-LTRLSGDISLLINLRTLDISNN-KLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF  119 (157)
Q Consensus        42 ~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~  119 (157)
                      +|..+..+++|+.|++++|. +..+|... .+++|+.|++++| .++.+|..   ..+++.|++++|.++.+|..+..++
T Consensus       794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~  869 (1153)
T PLN03210        794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS  869 (1153)
T ss_pred             cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence            34445556666666666653 44444332 4555666666654 33344432   2466777777787888887778888


Q ss_pred             CCcEEEccCC
Q psy3049         120 QIQILGLHGN  129 (157)
Q Consensus       120 ~L~~l~l~~n  129 (157)
                      +|+.+++.++
T Consensus       870 ~L~~L~L~~C  879 (1153)
T PLN03210        870 NLSFLDMNGC  879 (1153)
T ss_pred             CCCEEECCCC
Confidence            8888888774

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=8.5e-10  Score=79.38  Aligned_cols=87  Identities=26%  Similarity=0.364  Sum_probs=47.6

Q ss_pred             cCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC-Chhhh-----CccccceEEcCCCccc-----Cc
Q psy3049          48 QFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL-PSEIG-----DLIYLRELCLNNNNLR-----TL  111 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-----~~~~l~~l~l~~n~l~-----~l  111 (157)
                      .++.|+.+++++|.++.     +...+..+++|+.|++++|.++.. ...+.     ..+.|+.+++.+|.++     .+
T Consensus       191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  270 (319)
T cd00116         191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL  270 (319)
T ss_pred             hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence            34466666666666542     122234455666777766666531 11111     1256667777776664     22


Q ss_pred             chhhcCcCCCcEEEccCCCCCCh
Q psy3049         112 PYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus       112 ~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ...+..+++|++++++.|.+.+.
T Consensus       271 ~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         271 AEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHhcCCCccEEECCCCCCcHH
Confidence            33345556677777777777655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.95  E-value=7.9e-10  Score=79.56  Aligned_cols=84  Identities=29%  Similarity=0.370  Sum_probs=46.1

Q ss_pred             cccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cchh
Q psy3049          50 THLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPYE  114 (157)
Q Consensus        50 ~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~~  114 (157)
                      ++|+.+++++|.++.     +...+..+.++++|++++|.++.     ++..+...++|+++++++|.++.     +...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            556666666666651     12233444556666666666551     22334444566666666666552     2233


Q ss_pred             hcCcCCCcEEEccCCCCCC
Q psy3049         115 LGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus       115 ~~~~~~L~~l~l~~n~~~~  133 (157)
                      +..+++|+++++++|.+.+
T Consensus       217 ~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             hcccCCCCEEecCCCcCch
Confidence            4555666666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=98.94  E-value=4.6e-09  Score=82.22  Aligned_cols=109  Identities=25%  Similarity=0.403  Sum_probs=88.1

Q ss_pred             CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc-cccccccccccccEEeccCCCCC-CCChhhhCcc
Q psy3049          19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLI   96 (157)
Q Consensus        19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~   96 (157)
                      +..|++++|.+..         .+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.++ .+|..+..++
T Consensus       420 v~~L~L~~n~L~g---------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        420 IDGLGLDNQGLRG---------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEECCCCCccc---------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            5667788877763         13345677889999999999998 57778899999999999999987 6788999999


Q ss_pred             ccceEEcCCCccc-CcchhhcCc-CCCcEEEccCCCCCChhH
Q psy3049          97 YLRELCLNNNNLR-TLPYELGKL-FQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        97 ~l~~l~l~~n~l~-~l~~~~~~~-~~L~~l~l~~n~~~~~~~  136 (157)
                      +|+.|++++|.++ .+|..++.. .++..+++.+|...+..|
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999 888877653 467788999887544433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=4.2e-10  Score=83.52  Aligned_cols=95  Identities=44%  Similarity=0.575  Sum_probs=48.4

Q ss_pred             CCCCCCccchhhhccc-CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLI-NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      .+|.++.+++...... +|+.|+++.|.+..+|..          +..++.|+.|+++.|++..++...+....++.+++
T Consensus       124 ~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~----------~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP----------LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             CCcccccCccccccchhhcccccccccchhhhhhh----------hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            4566666666655553 666666666666665422          23344555555555555554443334444555555


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCC
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNN  106 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n  106 (157)
                      ++|.++.+|........++.+.+++|
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCC
Confidence            55555544443323333444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=2.5e-09  Score=58.54  Aligned_cols=58  Identities=45%  Similarity=0.637  Sum_probs=31.7

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCC
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNK   84 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~   84 (157)
                      +|+.|++++|+++.+|++.         |..+++|+++++++|.++.+++ .+..+++|+++++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~---------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDS---------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTT---------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHH---------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4556666666666655432         4455556666666665555432 34555555555555554

...

>KOG1259|consensus

Probab=98.86  E-value=6.9e-10  Score=78.18  Aligned_cols=124  Identities=23%  Similarity=0.248  Sum_probs=97.3

Q ss_pred             hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhh
Q psy3049          13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI   92 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   92 (157)
                      +..++.|+++|++.|.|+.+.++.          --.|.++.|+++.|.+..+. ++..+++|+.|++++|.++....+-
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESv----------KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh  348 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESV----------KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH  348 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhh----------hhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhH
Confidence            345678999999999998876643          23478999999999998765 4788999999999999998777666


Q ss_pred             hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChh-HHhhcCCCChHHH
Q psy3049          93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDY-MKIYNEPNGTQKL  148 (157)
Q Consensus        93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~l~~l  148 (157)
                      ..+.+++.|.+++|.+.++.. ++.+-+|.++|+++|.+.... ...++.++.+..+
T Consensus       349 ~KLGNIKtL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             hhhcCEeeeehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            677888999999999887743 688889999999999987442 2345556655554

>KOG4579|consensus

Probab=98.85  E-value=2e-10  Score=71.96  Aligned_cols=127  Identities=20%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             CCCCCCccchhhh---cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEE
Q psy3049           2 NDNNLTRLSGDIS---LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTL   78 (157)
Q Consensus         2 ~~n~i~~l~~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L   78 (157)
                      +.+++-.+++...   ....|+..++++|.+.++|+.+         ...++.++.+++++|.+..+|..+..++.|+.+
T Consensus        35 ssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf---------t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   35 SSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF---------TIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             ccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH---------hhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            3444444554433   4445667789999999888765         235678999999999999999889999999999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~  137 (157)
                      ++..|.+..+|..+..+.++-.|+..+|....+|-.+.........+++.+++.+..+.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence            99999999999988888899999999999988886544444455556677788776443

>KOG4237|consensus

Probab=98.78  E-value=1.2e-09  Score=79.15  Aligned_cols=113  Identities=23%  Similarity=0.378  Sum_probs=73.9

Q ss_pred             EEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCC-ChhhhCccccc
Q psy3049          22 LDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYL-PSEIGDLIYLR   99 (157)
Q Consensus        22 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~   99 (157)
                      ++-++..++++|.++.            +....+++..|+++.+|+ .|+.+.+|+.|++++|.|+++ |.++..++++.
T Consensus        51 VdCr~~GL~eVP~~LP------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~  118 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL  118 (498)
T ss_pred             EEccCCCcccCcccCC------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence            3445555666655432            235667777777777764 466777777777777777766 55666666655


Q ss_pred             eEEc-CCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049         100 ELCL-NNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       100 ~l~l-~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      .+-+ ++|+|+++|+. |+++..++.+.+..|++.+...+.+.+++.+.
T Consensus       119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~  167 (498)
T KOG4237|consen  119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS  167 (498)
T ss_pred             HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence            4433 34777777754 77777777777777777777777776665553

>KOG1859|consensus

Probab=98.65  E-value=5.8e-10  Score=86.32  Aligned_cols=121  Identities=29%  Similarity=0.324  Sum_probs=75.6

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      +.|+++.+..++.-++.++.|+++.|.++++.           .+..++.|++||++.|.++.+|.--..-.+|+.|.+.
T Consensus       172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~-----------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-----------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-----------HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence            45666666666666777777777777777653           1445667777777777776665432222246777777


Q ss_pred             CCCCCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCCh
Q psy3049          82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +|.++.+. .+.++.+|..||++.|-+....  ..+..+..|..|+|.+|++.+.
T Consensus       241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            77666542 2445666777777777666332  2245666777777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.56  E-value=1.3e-07  Score=48.06  Aligned_cols=37  Identities=43%  Similarity=0.638  Sum_probs=23.6

Q ss_pred             ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      +|++|++++|+++++|..+.++++|+++++++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4566667777777666666677777777777776664

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.49  E-value=2e-07  Score=47.35  Aligned_cols=38  Identities=42%  Similarity=0.660  Sum_probs=19.1

Q ss_pred             cccEEeccCCCCCCCChhhhCccccceEEcCCCcccCc
Q psy3049          74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL  111 (157)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l  111 (157)
                      +|++|++++|.++.+|..+..+++|+.+++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34555555555555544455555555555555555544

...

>KOG4658|consensus

Probab=98.46  E-value=1.4e-07  Score=76.30  Aligned_cols=83  Identities=30%  Similarity=0.422  Sum_probs=51.8

Q ss_pred             hhcCcccceEecccC-CCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcE
Q psy3049          46 LWQFTHLTALYMNDN-NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQI  123 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~  123 (157)
                      |..++.|.+|++++| .+.++|..++.+-+|++|++.++.++.+|..+..+..|.+|++..+.-. .+|.....+++|++
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            445666777777665 3446666666666777777777766666776666667777766665433 33444455666666


Q ss_pred             EEccC
Q psy3049         124 LGLHG  128 (157)
Q Consensus       124 l~l~~  128 (157)
                      +.+..
T Consensus       647 L~l~~  651 (889)
T KOG4658|consen  647 LRLPR  651 (889)
T ss_pred             EEeec
Confidence            66644

>KOG4658|consensus

Probab=98.41  E-value=1.5e-07  Score=76.00  Aligned_cols=121  Identities=31%  Similarity=0.393  Sum_probs=95.7

Q ss_pred             cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCC--Ccccc-ccccccccccEEeccCC-CCCCCChhh
Q psy3049          17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN--LTRLS-GDISLLINLRTLDISNN-KLRYLPSEI   92 (157)
Q Consensus        17 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~   92 (157)
                      ...+...+.+|.+..++...           ..+.+++|-+.+|.  +..++ ..|..++.|..||+++| .++.+|..+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~-----------~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS-----------ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             hheeEEEEeccchhhccCCC-----------CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            34555566666665554432           33468888888886  45554 34778999999999988 667999999


Q ss_pred             hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049          93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus        93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      +.+-+|++|+++++.++.+|..++++..|.+|++..+.....++.+...+.+|+.+
T Consensus       592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            99999999999999999999999999999999999887666667777777777765

>KOG3207|consensus

Probab=98.36  E-value=1.8e-07  Score=68.86  Aligned_cols=121  Identities=26%  Similarity=0.364  Sum_probs=78.2

Q ss_pred             hcccCCCEEEecCCcceecCc-----cccCCCCC------------ChhhhcCcccceEecccCC-Cccccccccccccc
Q psy3049          14 SLLINLRTLDISNNKLRYLPS-----EIGAVKNL------------SPDLWQFTHLTALYMNDNN-LTRLSGDISLLINL   75 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~~~~~-----~~~~~~~~------------~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L   75 (157)
                      ..+++|+.|+++.|.+.-.-+     .+++++.+            -.-...+|++..|++..|. +.........+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            456677777777776642111     22222211            1123356777788887774 22212223456678


Q ss_pred             cEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCc--chh-----hcCcCCCcEEEccCCCCCCh
Q psy3049          76 RTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTL--PYE-----LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        76 ~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l--~~~-----~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +.|++++|.+-.++  .....++.|..++++.|++.++  |+.     ...+++|++|++..|++.+.
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            99999999877665  4677889999999999999854  443     35678999999999998543

>KOG0531|consensus

Probab=98.34  E-value=1.3e-07  Score=70.79  Aligned_cols=117  Identities=26%  Similarity=0.412  Sum_probs=65.2

Q ss_pred             CCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCC
Q psy3049           4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN   83 (157)
Q Consensus         4 n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (157)
                      |.|..+-..+..+.++..+++..|.+.++...          +..+++|+++++++|.++.+. .+..+..|+.|++.+|
T Consensus        82 n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   82 NLIAKILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN  150 (414)
T ss_pred             hhhhhhhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence            34444333355566666666666666655432          224556666666666666543 2344445666666666


Q ss_pred             CCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCC
Q psy3049          84 KLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        84 ~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~  132 (157)
                      .++.+.. +..+..++.+++++|.+..+... ...+..+..+++.+|.+.
T Consensus       151 ~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  151 LISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            6664432 22255666666666666655442 355566666666666554

>KOG1859|consensus

Probab=98.30  E-value=2.1e-08  Score=78.02  Aligned_cols=105  Identities=31%  Similarity=0.329  Sum_probs=82.1

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccc
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY   97 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   97 (157)
                      .|...+++.|.+..+..          ++.-++.++.|++++|+++++. .+..+++|++||++.|.++.+|.--..-..
T Consensus       165 ~L~~a~fsyN~L~~mD~----------SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE----------SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK  233 (1096)
T ss_pred             hHhhhhcchhhHHhHHH----------HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh
Confidence            35555666666654433          4556788999999999999876 778899999999999999988763333344


Q ss_pred             cceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          98 LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        98 l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      |..|.+++|.++++.. +.++.+|..||++.|-+.+.
T Consensus       234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             heeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcc
Confidence            8999999999988754 68999999999999988765

>KOG1644|consensus

Probab=98.23  E-value=2.8e-06  Score=56.81  Aligned_cols=83  Identities=29%  Similarity=0.371  Sum_probs=58.8

Q ss_pred             hhcCcccceEecccCCCcccccccc-ccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchh----hcCc
Q psy3049          46 LWQFTHLTALYMNDNNLTRLSGDIS-LLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE----LGKL  118 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~----~~~~  118 (157)
                      +..++.|.+|.+.+|.++.+.+.+. .++.+..|.+++|++..+.  ..+..++.|++|.+-+|.++..+.-    +..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence            4466778888888888887766654 3456888888888877553  2456677888888888877754422    5677


Q ss_pred             CCCcEEEccC
Q psy3049         119 FQIQILGLHG  128 (157)
Q Consensus       119 ~~L~~l~l~~  128 (157)
                      |+|+.+|...
T Consensus       140 p~l~~LDF~k  149 (233)
T KOG1644|consen  140 PSLRTLDFQK  149 (233)
T ss_pred             CcceEeehhh
Confidence            8888888764

>KOG0531|consensus

Probab=98.23  E-value=2.3e-07  Score=69.57  Aligned_cols=99  Identities=32%  Similarity=0.515  Sum_probs=76.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +.+|.|..+...+..+.+|++|+++.|.|+++..           +..++.|+.|++.+|.++.+. .+..+..++.+++
T Consensus       102 l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-----------l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen  102 LYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-----------LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL  169 (414)
T ss_pred             ccccchhhcccchhhhhcchheeccccccccccc-----------hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence            4678888887668889999999999999997643           445666899999999998764 3445788889999


Q ss_pred             cCCCCCCCChh-hhCccccceEEcCCCcccCc
Q psy3049          81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL  111 (157)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l  111 (157)
                      ++|.++.+... ...+..++.+.+++|.+..+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            99988866542 35567777777777766644

>KOG3207|consensus

Probab=98.08  E-value=5.7e-07  Score=66.27  Aligned_cols=114  Identities=25%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc--------------------------
Q psy3049          12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL--------------------------   65 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--------------------------   65 (157)
                      ....|++++.||++.|=+..+.+-..       -...+++|+.|+++.|.+...                          
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~  213 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD  213 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHH-------HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH
Confidence            46779999999999997764332110       112344555555555544321                          


Q ss_pred             -cccccccccccEEeccCCC-CCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCC
Q psy3049          66 -SGDISLLINLRTLDISNNK-LRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        66 -~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~  132 (157)
                       ......+++++.|++..|. +.........+..|+.|++++|++-+.+  ...+.++.|..++++.+.+.
T Consensus       214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  214 VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence             1122334555555555552 2211111222356677777777777665  33677777777777777665

>KOG1644|consensus

Probab=98.07  E-value=6.5e-06  Score=55.13  Aligned_cols=96  Identities=22%  Similarity=0.345  Sum_probs=73.3

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc--ccccccccccEE
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L   78 (157)
                      |++|.+..++ .|..++.|.+|.+.+|+|+.+.+.+..         -++.++.|.+.+|++..+.  ..+..+++|++|
T Consensus        49 LtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---------~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   49 LTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---------FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccchhhcc-cCCCccccceEEecCCcceeeccchhh---------hccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4566666653 477888999999999999998887532         3467999999999998653  345678899999


Q ss_pred             eccCCCCCCCC----hhhhCccccceEEcCCC
Q psy3049          79 DISNNKLRYLP----SEIGDLIYLRELCLNNN  106 (157)
Q Consensus        79 ~l~~~~~~~~~----~~~~~~~~l~~l~l~~n  106 (157)
                      .+-+|.++...    -.+..+++++.+|+..-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99999887332    24678899999988654

>KOG1909|consensus

Probab=97.97  E-value=9.8e-07  Score=63.30  Aligned_cols=64  Identities=25%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             ccccccccEEeccCCCCC-----CCChhhhCccccceEEcCCCcccC-----cchhh-cCcCCCcEEEccCCCCC
Q psy3049          69 ISLLINLRTLDISNNKLR-----YLPSEIGDLIYLRELCLNNNNLRT-----LPYEL-GKLFQIQILGLHGNPLS  132 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~l~~l~l~~n~l~~-----l~~~~-~~~~~L~~l~l~~n~~~  132 (157)
                      +..+++|+.|++.+|.++     .+...+..+++|+.+++++|.++.     +-..+ ...|+|+.+.+.+|.++
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            344455555555555444     122334444455555555554441     11111 22445555555555554

>KOG1909|consensus

Probab=97.75  E-value=1.4e-05  Score=57.59  Aligned_cols=88  Identities=26%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             hhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhh-CccccceEEcCCCccc----
Q psy3049          45 DLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIG-DLIYLRELCLNNNNLR----  109 (157)
Q Consensus        45 ~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-~~~~l~~l~l~~n~l~----  109 (157)
                      .+..+++|+.|++++|.++.     +...++.+++|+.+++++|.++.     +...+. ..++|+.+.+.+|.++    
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            34556777777777777762     23345666677777777776651     222222 2467777777777766    


Q ss_pred             -CcchhhcCcCCCcEEEccCCCCC
Q psy3049         110 -TLPYELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus       110 -~l~~~~~~~~~L~~l~l~~n~~~  132 (157)
                       .+...+...+.|..|+|+.|.+.
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCccccc
Confidence             22333555677777777777773

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.67  E-value=0.00034  Score=43.60  Aligned_cols=122  Identities=12%  Similarity=0.245  Sum_probs=65.8

Q ss_pred             cchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCC
Q psy3049           9 LSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLR   86 (157)
Q Consensus         9 l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~   86 (157)
                      ++.. |.++.+|+.+.+.. .+..+++..         |..+..++.+.+..+ +..+. ..+..+.+++.+.+.+ .+.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~---------F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~   70 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENA---------FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK   70 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTT---------TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhh---------ccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence            4433 78888999999985 577777653         666778999999875 66654 3466777899999976 455


Q ss_pred             CCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049          87 YLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus        87 ~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                      .++. .+..++.++.+.+..+ +..++.. +.+. .++.+.+.. .+.......|.++..|
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            4543 5666899999999775 7777654 5665 899998876 4555566777766555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.0004  Score=51.88  Aligned_cols=105  Identities=21%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             hcccCCCEEEecCCcceecCcccc------------CCCCCChhhhcCcccceEecccC-CCccccccccccccccEEec
Q psy3049          14 SLLINLRTLDISNNKLRYLPSEIG------------AVKNLSPDLWQFTHLTALYMNDN-NLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~~~~~~~~------------~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l   80 (157)
                      ..+.+++.|++++|.+..+|. +.            .+..+|..+  .++|+.|.+.+| .+..+|..      |+.|++
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L  119 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI  119 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence            457788999999988887662 21            111223222  135777777776 44444432      444444


Q ss_pred             cCCC---CCCCChhhhCc------------------cccceEEcCCCcccCcchhhcCcCCCcEEEccCC
Q psy3049          81 SNNK---LRYLPSEIGDL------------------IYLRELCLNNNNLRTLPYELGKLFQIQILGLHGN  129 (157)
Q Consensus        81 ~~~~---~~~~~~~~~~~------------------~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  129 (157)
                      ..+.   +..+|..+..+                  ++|++|++++|....+|..+.  .+|++|+++.+
T Consensus       120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            4433   33445443222                  356777777776555554322  46777776654

>KOG3665|consensus

Probab=97.56  E-value=4.3e-05  Score=60.77  Aligned_cols=103  Identities=19%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             cCcccceEecccCCCccccccccccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchh-------hcCc
Q psy3049          48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-------LGKL  118 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~-------~~~~  118 (157)
                      ++++|..||+++++++.+ ...+.+.+|+.|.+.+=.+....  ..++.+.+|++||++.......+..       -..+
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L  249 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL  249 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence            567777777777777765 34556667777766555554332  2567788888888887655533321       2347


Q ss_pred             CCCcEEEccCCCCCChhHHhhc-CCCChHHHHHH
Q psy3049         119 FQIQILGLHGNPLSKDYMKIYN-EPNGTQKLLSY  151 (157)
Q Consensus       119 ~~L~~l~l~~n~~~~~~~~~~~-~~~~l~~l~~~  151 (157)
                      |.|+.+|.+++.+.+...+.+- .=++++++..+
T Consensus       250 peLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  250 PELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            7888888888887766555543 33455555433

>KOG2739|consensus

Probab=97.56  E-value=6.4e-05  Score=52.12  Aligned_cols=79  Identities=25%  Similarity=0.326  Sum_probs=35.4

Q ss_pred             ccceEecccCCCccccccccccccccEEeccCC--CCC-CCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEE
Q psy3049          51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNN--KLR-YLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILG  125 (157)
Q Consensus        51 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~  125 (157)
                      .++.+++.+..++.+. .+..+++|++|.++.|  +++ .++-....+++++++++++|+++.+.  .....+.+|..++
T Consensus        44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            3444444444444332 2334555555555555  222 22222223355555555555555322  1234444555555


Q ss_pred             ccCCC
Q psy3049         126 LHGNP  130 (157)
Q Consensus       126 l~~n~  130 (157)
                      +..++
T Consensus       123 l~n~~  127 (260)
T KOG2739|consen  123 LFNCS  127 (260)
T ss_pred             cccCC
Confidence            55543

>KOG2739|consensus

Probab=97.47  E-value=0.00011  Score=51.05  Aligned_cols=102  Identities=25%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc---cccccccccccccEEeccCCCCCCC--C
Q psy3049          15 LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT---RLSGDISLLINLRTLDISNNKLRYL--P   89 (157)
Q Consensus        15 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~   89 (157)
                      .+..++.+.+.+..++.+.           .+..+++|+.|.++.|...   .+..-.-.+++|+++++++|.+..+  -
T Consensus        41 ~~~~le~ls~~n~gltt~~-----------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-----------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             cccchhhhhhhccceeecc-----------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            3445555556665555431           2446789999999999443   2333344568999999999988743  2


Q ss_pred             hhhhCccccceEEcCCCcccCcc----hhhcCcCCCcEEEcc
Q psy3049          90 SEIGDLIYLRELCLNNNNLRTLP----YELGKLFQIQILGLH  127 (157)
Q Consensus        90 ~~~~~~~~l~~l~l~~n~l~~l~----~~~~~~~~L~~l~l~  127 (157)
                      ..+..+.+|..|++..|..+.+.    ..+.-+++|++++-.
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            24556778889999998777543    226778888888754

>KOG3665|consensus

Probab=97.42  E-value=0.00024  Score=56.63  Aligned_cols=107  Identities=27%  Similarity=0.343  Sum_probs=68.7

Q ss_pred             ccCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCcc--ccccccccccccEEeccCCCCCCCChh
Q psy3049          16 LINLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR--LSGDISLLINLRTLDISNNKLRYLPSE   91 (157)
Q Consensus        16 l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~   91 (157)
                      -.+|+.|++++...-  ..+..+         -.-+|+|+.|.+.+-.+..  +..-...+++|..||++++.++.+ .+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~ki---------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKI---------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHH---------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HH
Confidence            346777788775432  222221         1235778888887776652  223345677888888888887766 66


Q ss_pred             hhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCC
Q psy3049          92 IGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        92 ~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~  132 (157)
                      +..+.+|+.|.+.+=.+..-.  ..+.++.+|+.||++.....
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            777788888877776666432  34677888888888776544

>KOG2123|consensus

Probab=97.41  E-value=1.6e-05  Score=55.97  Aligned_cols=83  Identities=25%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             ccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh--hcCcCCCcEEEccC
Q psy3049          51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE--LGKLFQIQILGLHG  128 (157)
Q Consensus        51 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~--~~~~~~L~~l~l~~  128 (157)
                      +.+.|+.-+|.++.+. ...+|+.|+.|.|+-|.|+.+.. +..|..|++|.|+.|.|.++...  +.++|+|+.|+|..
T Consensus        20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            3444555555554431 23456666666666666665532 44567777777777777766533  66777777777777


Q ss_pred             CCCCChh
Q psy3049         129 NPLSKDY  135 (157)
Q Consensus       129 n~~~~~~  135 (157)
                      |+-++..
T Consensus        98 NPCc~~a  104 (388)
T KOG2123|consen   98 NPCCGEA  104 (388)
T ss_pred             CCccccc
Confidence            7766553

>KOG2982|consensus

Probab=97.26  E-value=0.0001  Score=52.47  Aligned_cols=87  Identities=28%  Similarity=0.322  Sum_probs=54.4

Q ss_pred             ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCC--CCChhh
Q psy3049          16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLR--YLPSEI   92 (157)
Q Consensus        16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~--~~~~~~   92 (157)
                      ++.++.+|+.+|.++++.+-.+       -+..+|++++|+++.|++....... ....+++.+.+.++.+.  .....+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~-------ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGA-------ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHH-------HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence            5567777888887776544221       2345677888888888776433333 24557777777776554  334455


Q ss_pred             hCccccceEEcCCCccc
Q psy3049          93 GDLIYLRELCLNNNNLR  109 (157)
Q Consensus        93 ~~~~~l~~l~l~~n~l~  109 (157)
                      ..+|.++++.++.|.+.
T Consensus       143 ~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSLR  159 (418)
T ss_pred             hcchhhhhhhhccchhh
Confidence            66677777777776444

>KOG0473|consensus

Probab=97.02  E-value=2.1e-05  Score=54.00  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             hhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049          46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG  125 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~  125 (157)
                      +..+...+.+|++.|.+..+...++.++.+..++++.|.+...|........+.++++-.|..+..|..++..+.+++.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            44566788899999998887778888888999999999999899988888888889988999999999999999999999


Q ss_pred             ccCCCCCChhHHhhc
Q psy3049         126 LHGNPLSKDYMKIYN  140 (157)
Q Consensus       126 l~~n~~~~~~~~~~~  140 (157)
                      +..|++.........
T Consensus       118 ~k~~~~~~~~~~~v~  132 (326)
T KOG0473|consen  118 QKKTEFFRKLFGFVW  132 (326)
T ss_pred             hccCcchHHHHhHhh
Confidence            999997755444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.99  E-value=0.00055  Score=29.13  Aligned_cols=19  Identities=47%  Similarity=0.714  Sum_probs=13.4

Q ss_pred             CCCEEEecCCcceecCccc
Q psy3049          18 NLRTLDISNNKLRYLPSEI   36 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~   36 (157)
                      +|++|++++|+++.+|+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            4677777777777777654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120|consensus

Probab=96.92  E-value=3.6e-05  Score=54.75  Aligned_cols=59  Identities=27%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             ccccccEEeccCC-CCC-CCChhhhCccccceEEcCCCcccCcch---hhcCcCCCcEEEccCCC
Q psy3049          71 LLINLRTLDISNN-KLR-YLPSEIGDLIYLRELCLNNNNLRTLPY---ELGKLFQIQILGLHGNP  130 (157)
Q Consensus        71 ~~~~L~~L~l~~~-~~~-~~~~~~~~~~~l~~l~l~~n~l~~l~~---~~~~~~~L~~l~l~~n~  130 (157)
                      +++.+.+||++++ .++ .....+..++.|+++.+++|- .-+|.   ++...|++.+|++.+.-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc-CCChHHeeeeccCcceEEEEecccc
Confidence            3556666666665 343 223345566667777766662 11121   25666777777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.92  E-value=0.00048  Score=29.29  Aligned_cols=19  Identities=37%  Similarity=0.558  Sum_probs=11.6

Q ss_pred             cceEEcCCCcccCcchhhc
Q psy3049          98 LRELCLNNNNLRTLPYELG  116 (157)
Q Consensus        98 l~~l~l~~n~l~~l~~~~~  116 (157)
                      |++|++++|+++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5666666666666665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.85  E-value=0.00087  Score=47.37  Aligned_cols=42  Identities=26%  Similarity=0.378  Sum_probs=23.5

Q ss_pred             hhhcCcccceEecccCCCc-ccccc----ccccccccEEeccCCCCC
Q psy3049          45 DLWQFTHLTALYMNDNNLT-RLSGD----ISLLINLRTLDISNNKLR   86 (157)
Q Consensus        45 ~~~~~~~L~~l~l~~~~~~-~~~~~----~~~~~~L~~L~l~~~~~~   86 (157)
                      .+.++++++.+++++|.+. ..|+.    +..-+.+.+|.+.+|.++
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            3445666777777777665 23322    234455666666666555

>KOG2982|consensus

Probab=96.84  E-value=0.00053  Score=49.01  Aligned_cols=137  Identities=20%  Similarity=0.215  Sum_probs=78.8

Q ss_pred             CCCCCCCc---cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc--cccccccccccc
Q psy3049           1 MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT--RLSGDISLLINL   75 (157)
Q Consensus         1 l~~n~i~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L   75 (157)
                      |.+|.|++   |..-+..++.+++|+++.|++...   ++++   |   .+..+|+.+-+.+..+.  .....+..++.+
T Consensus        78 L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~---I~~l---p---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   78 LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD---IKSL---P---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             cccchhccHHHHHHHHhcCccceEeeccCCcCCCc---cccC---c---ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45677773   434467899999999999998742   1111   1   13456777777777654  333445566666


Q ss_pred             cEEeccCCCCCCC--C-hh---------------------------hhCccccceEEcCCCcccCcchh--hcCcCCCcE
Q psy3049          76 RTLDISNNKLRYL--P-SE---------------------------IGDLIYLRELCLNNNNLRTLPYE--LGKLFQIQI  123 (157)
Q Consensus        76 ~~L~l~~~~~~~~--~-~~---------------------------~~~~~~l~~l~l~~n~l~~l~~~--~~~~~~L~~  123 (157)
                      +.+.++.|.++.+  . ..                           .+..+++..+.++.|.+++...+  ...++.+.-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            7776766644421  0 00                           11234555566666666644322  455666667


Q ss_pred             EEccCCCCCCh-hHHhhcCCCChH
Q psy3049         124 LGLHGNPLSKD-YMKIYNEPNGTQ  146 (157)
Q Consensus       124 l~l~~n~~~~~-~~~~~~~~~~l~  146 (157)
                      ++|+.|.+... ..+.+.+++.+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~  252 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLV  252 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhh
Confidence            77777776643 334444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.72  E-value=0.0053  Score=38.15  Aligned_cols=103  Identities=17%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             CCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccC
Q psy3049           5 NLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISN   82 (157)
Q Consensus         5 ~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~   82 (157)
                      .++.++.. |..+.+++.+.+.++ +..++...         +..++.++.+.+.+ .+..++ ..+..+..++.+.+..
T Consensus        22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~---------F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA---------FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT---------TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CeeEeChhhccccccccccccccc-ccccceee---------eecccccccccccc-cccccccccccccccccccccCc
Confidence            34556544 778889999999875 77776542         55666799999976 555444 3456688999999976


Q ss_pred             CCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCC
Q psy3049          83 NKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQI  121 (157)
Q Consensus        83 ~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L  121 (157)
                      + ++.++. .+... .++.+.+.. .+..++.. |.++++|
T Consensus        91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5 665543 45554 888888775 55666543 5555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.68  E-value=0.0027  Score=47.54  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             ccccEEeccCCCCCCCChhhhCccccceEEcCCC
Q psy3049          73 INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN  106 (157)
Q Consensus        73 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n  106 (157)
                      .+|++|++.+|.....|..+.  .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            468889888887655555432  57888888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.58  E-value=0.0041  Score=44.10  Aligned_cols=115  Identities=23%  Similarity=0.332  Sum_probs=69.7

Q ss_pred             hhhcccCCCEEEecCCcce-ecCccccCCCCCChhhhcCcccceEecccCCCccccc-cc-------------ccccccc
Q psy3049          12 DISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DI-------------SLLINLR   76 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~-------------~~~~~L~   76 (157)
                      .+.+|++|+.++++.|.++ +.|+.++      +.+.....+.+|.+.+|.+..+.. .+             ..-+.|+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le  160 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELG------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLE  160 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHH------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCce
Confidence            3457888888999888887 3444332      224455668888888887753321 11             1235677


Q ss_pred             EEeccCCCCCCCChh-----hhCccccceEEcCCCcccC--cc----hhhcCcCCCcEEEccCCCCC
Q psy3049          77 TLDISNNKLRYLPSE-----IGDLIYLRELCLNNNNLRT--LP----YELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        77 ~L~l~~~~~~~~~~~-----~~~~~~l~~l~l~~n~l~~--l~----~~~~~~~~L~~l~l~~n~~~  132 (157)
                      .+...+|++...+..     +..-..++.+.+..|.|..  +.    ..+..+.+|..+|++.|-++
T Consensus       161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            777778877655432     2222466677777776661  11    11445667777777777765

>KOG2120|consensus

Probab=96.37  E-value=0.00064  Score=48.62  Aligned_cols=120  Identities=19%  Similarity=0.094  Sum_probs=78.9

Q ss_pred             CCCCC-ccchhhhcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc--ccc-cccccccccE
Q psy3049           3 DNNLT-RLSGDISLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR--LSG-DISLLINLRT   77 (157)
Q Consensus         3 ~n~i~-~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~-~~~~~~~L~~   77 (157)
                      ++++. +|...+++-.+|..|+++++ ++++.....        -+..++.|..|++++|.+..  +.- .-..-.+++.
T Consensus       219 g~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  219 GLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             ccccCcHHHHHHhccccceeeccccccccchhHHHH--------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            34444 34445677888999999875 555432211        25578889999999997652  111 1123346788


Q ss_pred             EeccCCCCC----CCChhhhCccccceEEcCCC-ccc-CcchhhcCcCCCcEEEccCCC
Q psy3049          78 LDISNNKLR----YLPSEIGDLIYLRELCLNNN-NLR-TLPYELGKLFQIQILGLHGNP  130 (157)
Q Consensus        78 L~l~~~~~~----~~~~~~~~~~~l~~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n~  130 (157)
                      |+++++.-.    .+.--...++.+.+||+++| .++ ..-.++.+++.|+++.++.+.
T Consensus       291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            888887432    12223567899999999987 444 444568889999999988775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.33  E-value=0.0028  Score=25.07  Aligned_cols=16  Identities=75%  Similarity=1.092  Sum_probs=7.3

Q ss_pred             CCCEEEecCCcceecC
Q psy3049          18 NLRTLDISNNKLRYLP   33 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~   33 (157)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4666666666665543

...

>KOG2123|consensus

Probab=96.21  E-value=0.00024  Score=50.23  Aligned_cols=98  Identities=21%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCCh--hhh
Q psy3049          16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS--EIG   93 (157)
Q Consensus        16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~   93 (157)
                      +.+.+.|++-+++++++.-           ..+++.|+.|.++-|+++.+. .+..+++|+.|.|..|.|..+.+  -+.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-----------c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-----------CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-----------HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            4556666666666665421           225566777777777776653 34566677777777777665544  245


Q ss_pred             CccccceEEcCCCccc--Ccc----hhhcCcCCCcEEE
Q psy3049          94 DLIYLRELCLNNNNLR--TLP----YELGKLFQIQILG  125 (157)
Q Consensus        94 ~~~~l~~l~l~~n~l~--~l~----~~~~~~~~L~~l~  125 (157)
                      ++++|+.|=+..|.=.  .-+    ..+..+|+|+.||
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666666655554322  111    2245566666664

>KOG0473|consensus

Probab=94.80  E-value=0.00078  Score=46.55  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             ccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCC
Q psy3049           8 RLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLR   86 (157)
Q Consensus         8 ~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   86 (157)
                      .+| -++..+...+.||++.|++-.+...          +.-+..+..++++.|.+...|..++....+..+++..|..+
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n----------~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKN----------FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccc----------hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh
Confidence            444 2356677888889988888765544          34455678889999999888888888888888888889999


Q ss_pred             CCChhhhCccccceEEcCCCccc
Q psy3049          87 YLPSEIGDLIYLRELCLNNNNLR  109 (157)
Q Consensus        87 ~~~~~~~~~~~l~~l~l~~n~l~  109 (157)
                      ..|..+...++++.+++..|.+.
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hCCccccccCCcchhhhccCcch
Confidence            99999999999999999999866

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.09  E-value=0.063  Score=23.45  Aligned_cols=18  Identities=56%  Similarity=0.702  Sum_probs=8.9

Q ss_pred             ccceEEcCCCcccCcchh
Q psy3049          97 YLRELCLNNNNLRTLPYE  114 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~  114 (157)
                      +|+.|++++|+++.+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            445555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.09  E-value=0.063  Score=23.45  Aligned_cols=18  Identities=56%  Similarity=0.702  Sum_probs=8.9

Q ss_pred             ccceEEcCCCcccCcchh
Q psy3049          97 YLRELCLNNNNLRTLPYE  114 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~  114 (157)
                      +|+.|++++|+++.+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            445555555555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.10  E-value=0.035  Score=23.82  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=12.2

Q ss_pred             CCCcEEEccCCCCCChhHHhh
Q psy3049         119 FQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus       119 ~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      ++|++|+++.|.+++..+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566777777777766655544

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.84  E-value=0.22  Score=21.98  Aligned_cols=17  Identities=47%  Similarity=0.819  Sum_probs=10.5

Q ss_pred             CCCEEEecCCcceecCc
Q psy3049          18 NLRTLDISNNKLRYLPS   34 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~   34 (157)
                      .|+.|+.++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.75  E-value=0.41  Score=21.37  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=16.3

Q ss_pred             CCCcEEEccCCCCCChhHHhhc
Q psy3049         119 FQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus       119 ~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      ++|++|+|++|.+.......++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5688899999988876555543

>KOG4308|consensus

Probab=87.60  E-value=0.013  Score=45.08  Aligned_cols=126  Identities=26%  Similarity=0.258  Sum_probs=73.7

Q ss_pred             hhhhcccCCCEEEecCCcceecCccccCC-CCCChhhhcCcccceEecccCCCcc-----cccccccccc-ccEEeccCC
Q psy3049          11 GDISLLINLRTLDISNNKLRYLPSEIGAV-KNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLIN-LRTLDISNN   83 (157)
Q Consensus        11 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~~   83 (157)
                      ..+.....++.++++.|.+....  ...+ +.++..+....+++++.+.+|.++.     +...+....+ +..+++..|
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g--~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n  243 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELG--LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN  243 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhh--hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence            34445666777777777775211  0000 0011112245678888888887761     1122333344 555788888


Q ss_pred             CCCCC-----ChhhhCc-cccceEEcCCCccc-----CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049          84 KLRYL-----PSEIGDL-IYLRELCLNNNNLR-----TLPYELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus        84 ~~~~~-----~~~~~~~-~~l~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                      .+...     .+.+..+ ..+++++++.|.++     .++..+.+.+.++++.+..|++.+.....
T Consensus       244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~  309 (478)
T KOG4308|consen  244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL  309 (478)
T ss_pred             CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence            77622     2334444 56688888888887     34455677778888888888887664443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.05  E-value=0.64  Score=20.49  Aligned_cols=16  Identities=44%  Similarity=0.731  Sum_probs=9.8

Q ss_pred             cCCCEEEecCCcceec
Q psy3049          17 INLRTLDISNNKLRYL   32 (157)
Q Consensus        17 ~~L~~L~l~~~~l~~~   32 (157)
                      .+|+.|+++.|.|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666666543

>KOG3864|consensus

Probab=85.71  E-value=0.69  Score=31.59  Aligned_cols=77  Identities=19%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             cccEEeccCCCCCCC-ChhhhCccccceEEcCCCccc-Ccc-hhhc-CcCCCcEEEccCC-CCCChhHHhhcCCCChHHH
Q psy3049          74 NLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLR-TLP-YELG-KLFQIQILGLHGN-PLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus        74 ~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~-~l~-~~~~-~~~~L~~l~l~~n-~~~~~~~~~~~~~~~l~~l  148 (157)
                      .++.++-+++.|... -..+.+++.++.+.+.+|.-- ..- +.++ -.++|+.|++++| .|++....++...++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            345555555555433 234555566666665555322 110 0011 3456777777766 4666666666666666665


Q ss_pred             HH
Q psy3049         149 LS  150 (157)
Q Consensus       149 ~~  150 (157)
                      ..
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            43

>KOG1947|consensus

Probab=80.04  E-value=1.8  Score=32.87  Aligned_cols=84  Identities=21%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             cCcccceEecccC-CC-cccc----ccccccccccEEeccCCC-CCCCC--hhhhCccccceEEcCCCc-cc--Ccchhh
Q psy3049          48 QFTHLTALYMNDN-NL-TRLS----GDISLLINLRTLDISNNK-LRYLP--SEIGDLIYLRELCLNNNN-LR--TLPYEL  115 (157)
Q Consensus        48 ~~~~L~~l~l~~~-~~-~~~~----~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~l~~l~l~~n~-l~--~l~~~~  115 (157)
                      ..+.|+.+++.++ .. ...+    .....+..++.+++..+. ++..-  .....+++|+.+.+.++. ++  .+....
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence            4556666666652 11 1111    122344566667766664 44321  112225677777766655 44  233334


Q ss_pred             cCcCCCcEEEccCCCC
Q psy3049         116 GKLFQIQILGLHGNPL  131 (157)
Q Consensus       116 ~~~~~L~~l~l~~n~~  131 (157)
                      ..++.|++++++.+..
T Consensus       292 ~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhcCcccEEeeecCcc
Confidence            5666677777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		6e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 41  NLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYXXX 100
           N+S +++++  LT LY+N N+LT L  +I  L NLR LD+S+N+L  LP+E+G       
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 101 XXXXXXXXXXXPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD 154
                      P+E G L  +Q LG+ GNPL K ++KI  E + T  L+ YL D
Sbjct: 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-GLIFYLRD 350

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78
           + LD+ +NKL  LPS+            + T L  LY+NDN L  L +G    L NL TL
Sbjct: 40  KKLDLQSNKLSSLPSKA---------FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90
Query: 79  DISNNKLRYLPSEIGD 94
            +++NKL+ LP  + D
Sbjct: 91  WVTDNKLQALPIGVFD 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDIS-NNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N L  L   I+ L  LR L I    +L  LP  + +    S +     +L +L +  
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEW 192

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKL 118
             +  L   I+ L NL++L I N+ L  L   I  L  L EL L     LR  P   G  
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 119 FQIQILGLHGN 129
             ++ L L   
Sbjct: 253 APLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 9e-20
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +    L +       L +L+ + I    L  LP  +           QF  L  L +  N
Sbjct: 88  LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ----------QFAGLETLTLARN 137

Query: 61  NLTRLSGDISLLINLRTLDIS-NNKLRYLPSEIG---------DLIYLRELCLNNNNLRT 110
            L  L   I+ L  LR L I    +L  LP  +           L+ L+ L L    +R+
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 111 LPYELGKLFQIQILGLHGNPLS 132
           LP  +  L  ++ L +  +PLS
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +    +  L   I+ L NL++L I N+ L  L   I               L  L +   
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH----------HLPKLEELDLRGC 239

Query: 61  N-LTRLSGDISLLINLRTLDISN-NKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGK 117
             L            L+ L + + + L  LP +I  L  L +L L    NL  LP  + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 118 LFQIQILGLHGNPLSK 133
           L    I+ +  +  ++
Sbjct: 300 LPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 8   RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG 67
             SG+   L+NL++L +    +R LP+ I              +L +L + ++ L+ L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIA----------NLQNLKSLKIRNSPLSALGP 223

Query: 68  DISLLINLRTLDIS-NNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQIQILG 125
            I  L  L  LD+     LR  P   G    L+ L L + +NL TLP ++ +L Q++ L 
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 126 LHGNP 130
           L G  
Sbjct: 284 LRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 8/129 (6%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            D N    +   +   N +    +   L+     +                 AL +    
Sbjct: 41  ADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG--------RVALELRSVP 92

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           L +       L +L+ + I    L  LP  +     L  L L  N LR LP  +  L ++
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152

Query: 122 QILGLHGNP 130
           + L +   P
Sbjct: 153 RELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 13/130 (10%)

Query: 16  LINLRTLDISN-NKLRYLPSEIGAVKNLS-------PDLWQFTHLTALYMNDNNLTRLSG 67
                 L       LR     +   +             W+  +     +       L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 68  DISLL-----INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
              LL          L++ +  L   P +   L +L+ + ++   L  LP  + +   ++
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE 130

Query: 123 ILGLHGNPLS 132
            L L  NPL 
Sbjct: 131 TLTLARNPLR 140

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.8 bits (207), Expect = 1e-19
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N  N+T+L   +  L  L++L+I+ N+             L+ D      +   YM  NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 62  LTRL--SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           L     S  +  ++ L  LD  +NK+R+L    G  + L +L L+ N +  +P +     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 120 -QIQILGLHGNPLS 132
            Q++ LG   N L 
Sbjct: 619 DQVEGLGFSHNKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N + +  +   +    + T+ +SNN +  +P      K    +      LT + +  
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL--KPKDGNYKNTYLLTTIDLRF 737

Query: 60  NNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGDLIYLRELCL-------NNNNLRT 110
           N LT LS D     L  L  +D+S N     P++  +   L+   +        N  LR 
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
            P  +     +  L +  N + K
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 4e-15
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
           +N+L    G+      L T+D+  NKL  L  +               +L+ + ++ N  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR--------ATTLPYLSNMDVSYNCF 765

Query: 63  TRLSGDISLLINLRTLDIS-------NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
           +           L+   I        N  LR  P+ I     L +L + +N++R +  +L
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 116 GKLFQIQILGLHGNPLS 132
               Q+ IL +  NP  
Sbjct: 826 TP--QLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 23/153 (15%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQFTHLT 53
           N +T +S  I  L  L+ +  +N+   Y    +             +N          LT
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 54  ALYMNDNN-LTRLSGDISLLINLRTLDISNNKLRY----------LPSEIGDLIYLRELC 102
            + + +   +T+L   +  L  L++L+I+ N+             L  +      ++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 103 LNNNNLRTLPYE--LGKLFQIQILGLHGNPLSK 133
           +  NNL   P    L K+ ++ +L    N +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 2   NDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + N L  +    +   +  + ++D S NK+      I      S D ++  + + + ++ 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC----SMDDYKGINASTVTLSY 682

Query: 60  NNLTRL-SGDISLLINLRTLDISNNKLRYLPSE--------IGDLIYLRELCLNNNNLRT 110
           N + +  +   +    + T+ +SNN +  +P            +   L  + L  N L +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 111 LPYEL--GKLFQIQILGLHGNPLS 132
           L  +     L  +  + +  N  S
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 22/145 (15%)

Query: 1   MNDNNLT----------RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFT 50
           +  N             RL+ D      ++   +  N L   P+           L +  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS--------ASLQKMV 573

Query: 51  HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG-DLIYLRELCLNNNNLR 109
            L  L    N +  L       + L  L +  N++  +P +       +  L  ++N L+
Sbjct: 574 KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 110 TLP--YELGKLFQIQILGLHGNPLS 132
            +P  +    ++ +  +    N + 
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 6e-13
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N +  +  D  +    +  L  S+NKL+Y+P+                 + ++  + 
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN--------AKSVYVMGSVDFSY 653

Query: 60  NNLTRLSGDISL------LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
           N +     +IS        IN  T+ +S N+++  P+E+      +  + L+NN + ++P
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 113 --------YELGKLFQIQILGLHGNPLSK 133
                         + +  + L  N L+ 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 3   DNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            N LT LS D     L  L  +D+S N     P++      L      F          N
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK----AFGIRHQRDAEGN 792

Query: 61  NLTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKL 118
            + R     I+   +L  L I +N +R +  ++     L  L + +N   ++    +   
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850

Query: 119 FQIQILGLHGNPLS 132
            +  +  L  +   
Sbjct: 851 IEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 14/130 (10%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
             +  +  D  + +    +    N++ ++   I           + T L  +Y  ++  T
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ----------RLTKLQIIYFANSPFT 461

Query: 64  RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQIQ 122
             +  +              +         +L  L ++ L N  N+  LP  L  L ++Q
Sbjct: 462 YDNIAVDWEDANSDY---AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 123 ILGLHGNPLS 132
            L +  N   
Sbjct: 519 SLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 3   DNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
                 R+   I  L  L+ L    +         G  + L+PD+ +             
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD-EELTPDMSEERKHRIRMHYKKM 390

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
                  ++L   L+     N +++ +  +    +   ++    N +  +   + +L ++
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 122 QILGLHGNPLS 132
           QI+    +P +
Sbjct: 451 QIIYFANSPFT 461

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 46  LWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLN 104
           L     +T L +       R+   I  L  L+ L    +         GD     ++   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 105 NNNLRTLPYELGKLFQIQILGL 126
             +   + Y+   L   Q L L
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNL 400

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 1   MNDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           ++ NNL+RL  + +   L NL +L +S+N L ++ S   A   +        +L  L ++
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPV-------PNLRYLDLS 96

Query: 59  DNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-- 114
            N+L  L     S L  L  L + NN +  +      D+  L++L L+ N +   P E  
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 115 --LGKLFQIQILGLHGNPLS 132
               KL ++ +L L  N L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N+L  +S +    + NLR LD+S+N L  L   +               L  L + +
Sbjct: 71  LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------FSDLQALEVLLLYN 121

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI----GDLIYLRELCLNNNNLRTLPYE 114
           N++  +  +    +  L+ L +S N++   P E+      L  L  L L++N L+ LP  
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 115 ----LGKLFQIQILGLHGNPL 131
               L        L LH NPL
Sbjct: 182 DLQKLPAW-VKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 3e-15
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +   L  +   +        LD+S+N L  L +E            + T+L +L ++ N+
Sbjct: 26  SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW--------TPTRLTNLHSLLLSHNH 75

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKL 118
           L  +S +    + NLR LD+S+N L  L   +  DL  L  L L NN++  +       +
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 119 FQIQILGLHGNPLS 132
            Q+Q L L  N +S
Sbjct: 136 AQLQKLYLSQNQIS 149

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 7e-18
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
           ++DN L  L    S    L  L   NN+L  LP+    +K L          P L   + 
Sbjct: 188 VSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PSE 242

Query: 52  LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
           L  L ++ N LT L     L   L +L +  N+L  LP  +  L     + L  N L   
Sbjct: 243 LKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299

Query: 112 PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
             +  +  +I     +  P+ +  M   + P  T+ L     D L
Sbjct: 300 TLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 8e-17
 Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA------ 54
           + DNNLT L         LRTL++S N+L  LP     +  LS      THL A      
Sbjct: 68  IPDNNLTSLPALPP---ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

Query: 55  -LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY 113
            L++  N LT L     L   L+ L +S+N+L  LP+   +   L +L   NN L +LP 
Sbjct: 125 KLWIFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSE---LCKLWAYNNQLTSLPM 178

Query: 114 ELGKLFQIQILGLHGNPLS 132
               L   Q L +  N L+
Sbjct: 179 LPSGL---QELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 4e-16
 Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 23/139 (16%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTHLT 53
            N LT L    +L   L  L I  N+L  LP     ++ LS         P L   + L 
Sbjct: 110 SNPLTHLP---ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL--PSELC 164

Query: 54  ALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY 113
            L+  +N LT L    S    L+ L +S+N+L  LP+   +L  L      NN L +LP 
Sbjct: 165 KLWAYNNQLTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKLWAY---NNRLTSLPA 218

Query: 114 ELGKLFQIQILGLHGNPLS 132
               L   + L + GN L+
Sbjct: 219 LPSGL---KELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 8e-16
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
           +  N LT L     L   L+ L +S+N+L  LP+    +  L          P L   + 
Sbjct: 128 IFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML--PSG 182

Query: 52  LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
           L  L ++DN L  L    S    L  L   NN+L  LP+       L+EL ++ N L +L
Sbjct: 183 LQELSVSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSL 236

Query: 112 PYELGKLFQIQILGLHGNPLS 132
           P    +L   + L + GN L+
Sbjct: 237 PVLPSEL---KELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 3e-15
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
               L++  + L  LP  +              H+T L + DNNLT L         LRT
Sbjct: 41  GNAVLNVGESGLTTLPDCLP------------AHITTLVIPDNNLTSLPALPP---ELRT 85

Query: 78  LDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKL 118
           L++S N+L  LP     L+ L        +L  LP  L KL
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 24/142 (16%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS----------PDLWQFT 50
           + ++ LT L     L  ++ TL I +N L  LP+    ++ L                  
Sbjct: 47  VGESGLTTL--PDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLL 104

Query: 51  HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
            L+       +L       +L   L  L I  N+L  LP        L+EL +++N L +
Sbjct: 105 ELSIFSNPLTHLP------ALPSGLCKLWIFGNQLTSLPVLPPG---LQELSVSDNQLAS 155

Query: 111 LPYELGKLFQIQILGLHGNPLS 132
           LP    +L     L  + N L+
Sbjct: 156 LPALPSEL---CKLWAYNNQLT 174

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 50  THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
                L + ++ LT L     L  ++ TL I +N L  LP+   +   LR L ++ N L 
Sbjct: 40  NGNAVLNVGESGLTTL--PDCLPAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLT 94

Query: 110 TLPYELGKLFQIQILGLHGNPLS 132
           +LP     L ++ I       L 
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 14/124 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  N LTRL   +  L +  T+++  N L     +                +T+      
Sbjct: 268 VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA------------LREITSAPGYSG 315

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL--NNNNLRTLPYELGKL 118
            + R     +                 +P+  G+        +    +N       L +L
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

Query: 119 FQIQ 122
            + +
Sbjct: 376 SETE 379

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             N +  +  G  S    LR +D+SNN++  L     A + L         L +L +  N
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGL-------RSLNSLVLYGN 90

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LGK 117
            +T L       L +L+ L ++ NK+  L  +    L  L  L L +N L+T+       
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 118 LFQIQILGLHGNPL 131
           L  IQ + L  NP 
Sbjct: 151 LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
           +   +D     L  +P+ +               +T + +  N +  +  G  S    LR
Sbjct: 12  SNNIVDCRGKGLTEIPTNL------------PETITEIRLEQNTIKVIPPGAFSPYKKLR 59

Query: 77  TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
            +D+SNN++  L  +    L  L  L L  N +  LP  L   LF +Q+L L+ N ++
Sbjct: 60  RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 5e-17
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + +N +T L   D      ++ LD+  N++  +          +        L  L +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------FAELAASSDTLEHLNLQY 178

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           N +  + G +     L+TLD+S+NKL ++  E      +  + L NN L  +   L    
Sbjct: 179 NFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 120 QIQILGLHGNPLSKD 134
            ++   L GN     
Sbjct: 238 NLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-----------VKNLSPD-LWQF 49
           N+N +     ++ +  ++ TL  +NN +  +    G            +  L        
Sbjct: 88  NNNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 50  THLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
           + +  L +  N +  ++     +    L  L++  N +  +  ++     L+ L L++N 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNK 202

Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
           L  +  E      +  + L  N L 
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  N +  + G +     L+TLD+S+NKL ++  E                +T + + +N
Sbjct: 176 LQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNN 224

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  +   +    NL   D+  N               R   +    ++ L  +  +   
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 121 IQILGLHGN 129
           +  LG +G 
Sbjct: 285 VPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 21/148 (14%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLP-SEIGAVKNLS------------PDL 46
           + D++L +    +     N++ LD+S N L  +  +++     L              DL
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76

Query: 47  WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
              + L  L +N+N +     ++ +  ++ TL  +NN +  +    G     + + L NN
Sbjct: 77  ESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANN 130

Query: 107 NLRTLP-YELGKLFQIQILGLHGNPLSK 133
            +  L   + G   ++Q L L  N +  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N L     D+  L  LRTLD++NN ++ L                   +  L+  +N
Sbjct: 65  LSSNVLYETL-DLESLSTLRTLDLNNNYVQELL--------------VGPSIETLHAANN 109

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE--LGK 117
           N++R+S         + + ++NNK+  L   + G    ++ L L  N + T+ +      
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 118 LFQIQILGLHGNPLSK 133
              ++ L L  N +  
Sbjct: 168 SDTLEHLNLQYNFIYD 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 9   LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-G 67
           +          +   ++++ L+   + +              ++  L ++ N L+++S  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQ---------SAWNVKELDLSGNPLSQISAA 52

Query: 68  DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLH 127
           D++    L  L++S+N L     ++  L  LR L LNNN ++ L         I+ L   
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107

Query: 128 GNPLSK 133
            N +S+
Sbjct: 108 NNNISR 113

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
               L  +S      L NL+ L++    ++ +P           +L     L  L M+ N
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------NLTPLVGLEELEMSGN 228

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGK 117
           +   +  G    L +L+ L + N+++  +       L  L EL L +NNL +LP++    
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 118 LFQIQILGLHGNPL 131
           L  +  L LH NP 
Sbjct: 289 LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N++ ++     + L +L TL++ +N L  +PS               + L  L++ +
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA---------FEYLSKLRELWLRN 156

Query: 60  NNLTRLSGDI-SLLINLRTLDIS-NNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
           N +  +     + + +L  LD+    KL Y+       L  L+ L L   N++ +P  L 
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLT 215

Query: 117 KLFQIQILGLHGNPLSK 133
            L  ++ L + GN   +
Sbjct: 216 PLVGLEELEMSGNHFPE 232

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + +NN+  + +     L +L  L +  N +R +    GA   L         L  L + D
Sbjct: 82  LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--GAFNGL-------ASLNTLELFD 132

Query: 60  NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-L 115
           N LT + SG    L  LR L + NN +  +PS     +  L  L L     L  +     
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 116 GKLFQIQILGLHGNPLS 132
             LF ++ L L    + 
Sbjct: 193 EGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 5e-13
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +   N+  +  +++ L+ L  L++S N    +    G+   L       + L  L++ ++
Sbjct: 203 LGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP--GSFHGL-------SSLKKLWVMNS 252

Query: 61  NLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
            ++ +       L +L  L++++N L  LP ++   L YL EL L++N   
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
               +  +   L  +P  I             ++   L + +NN+  + +     L +L 
Sbjct: 55  QFSKVVCTRRGLSEVPQGI------------PSNTRYLNLMENNIQMIQADTFRHLHHLE 102

Query: 77  TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
            L +  N +R +       L  L  L L +N L  +P      L +++ L L  NP+  
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
               L+ +S      L NLR L+++   LR +           P+L     L  L ++ N
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----------PNLTPLIKLDELDLSGN 217

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGK 117
           +L+ +  G    L++L+ L +  ++++ +      +L  L E+ L +NNL  LP++    
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 118 LFQIQILGLHGNPL 131
           L  ++ + LH NP 
Sbjct: 278 LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N++  +     + L NL TL++ +N+L  +P+  GA   L       + L  L++ +
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN--GAFVYL-------SKLKELWLRN 145

Query: 60  NNLTRLSGDI-SLLINLRTLDIS-NNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
           N +  +     + + +LR LD+    +L Y+       L  LR L L   NLR +P  L 
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT 204

Query: 117 KLFQIQILGLHGNPLSK 133
            L ++  L L GN LS 
Sbjct: 205 PLIKLDELDLSGNHLSA 221

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 7e-14
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +++N +  +       L +L  L +S N +R +    GA   L        +L  L + D
Sbjct: 71  LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--GAFNGL-------ANLNTLELFD 121

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-L 115
           N LT +  G    L  L+ L + NN +  +PS     +  LR L L     L  +     
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 116 GKLFQIQILGLHGNPLSK 133
             L  ++ L L    L +
Sbjct: 182 EGLSNLRYLNLAMCNLRE 199

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +   NL  +  +++ LI L  LD+S N L  +                  HL  L+M  +
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------FQGLMHLQKLWMIQS 241

Query: 61  NLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
            +  +       L +L  +++++N L  LP ++   L +L  + L++N   
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
              NL  +   IS   N R L++  N+++ +     + K+L        HL  L ++ N+
Sbjct: 51  VRKNLREVPDGIS--TNTRLLNLHENQIQIIKV--NSFKHL-------RHLEILQLSRNH 99

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKL 118
           +  +     + L NL TL++ +N+L  +P+     L  L+EL L NN + ++P     ++
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 119 FQIQILGL-HGNPLS 132
             ++ L L     LS
Sbjct: 160 PSLRRLDLGELKRLS 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 2   NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           N+N  T L   G    L  LR ++ SNNK+  +    GA +         + +  + +  
Sbjct: 40  NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGA-------SGVNEILLTS 90

Query: 60  NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LG 116
           N L  +       L +L+TL + +N++  + ++    L  +R L L +N + T+      
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 117 KLFQIQILGLHGNPL 131
            L  +  L L  NP 
Sbjct: 151 TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINL 75
              T+D SN KL  +P  I              +   L +N+N  T L   G    L  L
Sbjct: 12  EGTTVDCSNQKLNKIPEHI------------PQYTAELRLNNNEFTVLEATGIFKKLPQL 59

Query: 76  RTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
           R ++ SNNK+  +     +    + E+ L +N L  + +++   L  ++ L L  N ++
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 4e-16
 Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N L  L      L  L  LD+S N+L  LP            L     L  LY+  N
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA---------LRGLGELQELYLKGN 134

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKL 118
            L  L   + +    L  L ++NN L  LP+ + + L  L  L L  N+L T+P      
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

Query: 119 FQIQILGLHGNP 130
             +    LHGNP
Sbjct: 195 HLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 8e-14
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +   LT+L  D   L  L TLD+S+N+L+ LP                  LT L ++ N 
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQ----------TLPALTVLDVSFNR 111

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKL 118
           LT L       L  L+ L +  N+L+ LP  +      L +L L NNNL  LP  L   L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 119 FQIQILGLHGNPLS 132
             +  L L  N L 
Sbjct: 172 ENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +  NLT L  D+    +   L +S N L         +          T LT L ++   
Sbjct: 18  DKRNLTALPPDL--PKDTTILHLSENLLYTFSL--ATLMPY-------TRLTQLNLDRAE 66

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-GKLFQ 120
           LT+L  D   L  L TLD+S+N+L+ LP     L  L  L ++ N L +LP      L +
Sbjct: 67  LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 121 IQILGLHGNPLS 132
           +Q L L GN L 
Sbjct: 126 LQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
           +   ++     L  LP ++                T L++++N L   S   +     L 
Sbjct: 11  SHLEVNCDKRNLTALPPDL------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
            L++   +L  L  + G L  L  L L++N L++LP     L  + +L +  N L+ 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  NNLT  +  +     L  +D+S N+L  +               +   L  LY+++N
Sbjct: 233 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHP---------FVKMQRLERLYISNN 282

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  L+     +  L+ LD+S+N L ++         L  L L++N++ TL   L     
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340

Query: 121 IQILGLHGNPLSKD 134
           ++ L L  N    +
Sbjct: 341 LKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
           ++ N L+ L+      I +  LD S+N +  +         L+              L  
Sbjct: 193 VSYNLLSTLAI----PIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLN 246

Query: 49  FTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
           +  L  + ++ N L ++       +  L  L ISNN+L  L      +  L+ L L++N+
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
           L  +     +  +++ L L  N + 
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 18/140 (12%)

Query: 3   DNNLTRLSGDISL------LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
           D ++   + D+        L N + +   N+ +R LP+ +         L  F  +  L 
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---------LDSFRQVELLN 75

Query: 57  MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE 114
           +ND  +  +     +    ++ L +  N +RYLP  +  ++  L  L L  N+L +LP  
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 115 L-GKLFQIQILGLHGNPLSK 133
           +     ++  L +  N L +
Sbjct: 136 IFHNTPKLTTLSMSNNNLER 155

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N+L+ L   I      L TL +SNN L  +  +              T L  L ++ 
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---------ATTSLQNLQLSS 174

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           N LT +  D+SL+ +L   ++S N L    S +   I + EL  ++N++  +   +    
Sbjct: 175 NRLTHV--DLSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NV 226

Query: 120 QIQILGLHGNPLS 132
           ++ IL L  N L+
Sbjct: 227 ELTILKLQHNNLT 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 13/135 (9%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++   L  L   +   L  L+ L + +N L+ LP      ++L        +LT L+++ 
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDL-------GNLTHLFLHG 162

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
           N ++ +       L +L  L +  N++ ++      DL  L  L L  NNL  LP E L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 117 KLFQIQILGLHGNPL 131
            L  +Q L L+ NP 
Sbjct: 223 PLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N ++ + +       NL  L + +N L  + +   A   L         L  L ++D
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGL-------ALLEQLDLSD 89

Query: 60  NN-LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-L 115
           N  L  +       L  L TL +    L+ L   +   L  L+ L L +N L+ LP +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 116 GKLFQIQILGLHGNPLS 132
             L  +  L LHGN +S
Sbjct: 150 RDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLIN 74
           L  L TL +    L+ L    G  + L         L  LY+ DN L  L  D    L N
Sbjct: 104 LGRLHTLHLDRCGLQELGP--GLFRGL-------AALQYLYLQDNALQALPDDTFRDLGN 154

Query: 75  LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
           L  L +  N++  +P      L  L  L L+ N +  +       L ++  L L  N LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
               L  +   I      + + +  N++ ++P+                +LT L+++ N 
Sbjct: 19  PQQGLQAVPVGIP--AASQRIFLHGNRISHVPAA---------SFRACRNLTILWLHSNV 67

Query: 62  LTRLS-GDISLLINLRTLDISNN-KLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGK 117
           L R+     + L  L  LD+S+N +LR +       L  L  L L+   L+ L       
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 118 LFQIQILGLHGNPLS 132
           L  +Q L L  N L 
Sbjct: 128 LAALQYLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + DN L  L  D    L NL  L +  N++  +P    A + L         L  L ++ 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGL-------HSLDRLLLHQ 186

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
           N +  +       L  L TL +  N L  LP+E    L  L+ L LN+N   
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 6e-16
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +++N +++      S    L ++++  N L  +P      K+ + +      LT++ +  
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL--KDENENFKNTYLLTSIDLRF 497

Query: 60  NNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGDLIYLRELCL-------NNNNLRT 110
           N LT+LS D     L  L  +D+S N     P++  +   L+   +        N  LR 
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
            P  +     +  L +  N + K
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 6e-16
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N  NLT+L   +  L  ++ ++++ N+           + L+ D      +  +Y+  NN
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNN 316

Query: 62  LTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-GKL 118
           L        +  +  L  L+   N+L       G  I L  L L  N +  +P    G  
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 119 FQIQILGLHGNPLS 132
            Q++ L    N L 
Sbjct: 377 EQVENLSFAHNKLK 390

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
            N+L   + +      L ++D+  NKL  L  +               +L  + ++ N+ 
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR--------ATTLPYLVGIDLSYNSF 525

Query: 63  TRLSGDISLLINLRTLDIS-------NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
           ++          L+   I        N  LR  P  I     L +L + +N++R +  ++
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 116 GKLFQIQILGLHGNPLS 132
                I +L +  NP  
Sbjct: 586 --TPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 20/143 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
              N L          I L +L+++ N++  +P+                 +  L    N
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG---------FTEQVENLSFAHN 387

Query: 61  NLTRL--SGDISLLINLRTLDISNNKLR--------YLPSEIGDLIYLRELCLNNNNLRT 110
            L  +    D   +  +  +D S N++          L       I +  + L+NN +  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 111 LPYE-LGKLFQIQILGLHGNPLS 132
            P E       +  + L GN L+
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 23/146 (15%)

Query: 1   MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           +  NNL        +  +  L  L+   N+L       G              L +L + 
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG----------SEIKLASLNLA 361

Query: 59  DNNLTRLSGDI-SLLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNNNLR------ 109
            N +T +  +       +  L  ++NKL+Y+P+  +   +  +  +  + N +       
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 110 --TLPYELGKLFQIQILGLHGNPLSK 133
              L     K   +  + L  N +SK
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISK 447

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP----------SEIGAVKNLSPDLWQFT 50
              NN+T +S  +  L  LR   + N+                      K          
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 51  HLTALYMNDNN-LTRLSGDISLLINLRTLDISNNKLRYLP---------SEIGDLIYLRE 100
            LT + + +   LT+L   +  L  ++ ++++ N+              ++      ++ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 101 LCLNNNNLRTL--PYELGKLFQIQILGLHGNPLS 132
           + +  NNL+T      L K+ ++ +L    N L 
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 14/132 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +D     +     + +    +   +N + ++   +           + T L   YM ++ 
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM----------RLTKLRQFYMGNSP 217

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQ 120
                 +               + +    +  +L  L ++ + N  NL  LP  L  L +
Sbjct: 218 FV---AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 121 IQILGLHGNPLS 132
           +Q++ +  N   
Sbjct: 275 MQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 25/133 (18%)

Query: 3   DNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLS----------------- 43
            N LT+LS D     L  L  +D+S N     P++      L                  
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 44  ---PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP-SEIGDLIYLR 99
                +     LT L +  N++ +++    +  N+  LDI +N    +  S +   I   
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNE--KITPNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 100 ELCLNNNNLRTLP 112
              L  +  + + 
Sbjct: 615 MYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 10/138 (7%), Positives = 37/138 (26%), Gaps = 14/138 (10%)

Query: 2   NDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
                + R+   I  L  L  L + ++  +               +              
Sbjct: 89  EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF-----GPKGISANMSDEQKQKMRM 143

Query: 61  NLTRLSGDISLLINLRTLDISNNKLR------YLPSEIGDLIYLRELCLNNNNLRTLPYE 114
           +  +    +         D+  + +        +       +   ++   +NN+  +   
Sbjct: 144 HYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 115 LGKLFQIQILGLHGNPLS 132
           + +L +++   +  +P  
Sbjct: 202 VMRLTKLRQFYMGNSPFV 219

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLIN 74
           +  L  + I++  +  +P  +               LT L+++ N +T++    +  L N
Sbjct: 170 MKKLSYIRIADTNITTIPQGL------------PPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 75  LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
           L  L +S N +  + +    +  +LREL LNNN L  +P  L     IQ++ LH N +S 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 19/140 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + D N+T +     L  +L  L +  NK+  + +           L    +L  L ++ N
Sbjct: 178 IADTNITTIPQG--LPPSLTELHLDGNKITKVDAA---------SLKGLNNLAKLGLSFN 226

Query: 61  NLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP------- 112
           +++ +  G ++   +LR L ++NNKL  +P  + D  Y++ + L+NNN+  +        
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 113 YELGKLFQIQILGLHGNPLS 132
               K      + L  NP+ 
Sbjct: 287 GYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +D  L ++  D+    +   LD+ NNK+  +            D     +L  L + +N 
Sbjct: 39  SDLGLEKVPKDLPP--DTALLDLQNNKITEIKDG---------DFKNLKNLHTLILINNK 87

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
           ++++S    + L+ L  L +S N+L+ LP ++     L+EL ++ N +  +       L 
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 120 QIQILGLHGNPLSKDY 135
           Q+ ++ L  NPL    
Sbjct: 146 QMIVVELGTNPLKSSG 161

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            +N +T +  GD   L NL TL + NNK+  +    GA   L         L  LY++ N
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISP--GAFAPL-------VKLERLYLSKN 110

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG--- 116
            L  L     +   L+ L +  N++  +   +   L  +  + L  N L++   E G   
Sbjct: 111 QLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 117 KLFQIQILGLHGNPLSK 133
            + ++  + +    ++ 
Sbjct: 169 GMKKLSYIRIADTNITT 185

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + +N ++++S    + L+ L  L +S N+L+ LP ++               L  L +++
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM------------PKTLQELRVHE 130

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYEL 115
           N +T++   + + L  +  +++  N L+    E G    +  L  + + + N+ T+P  L
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190

Query: 116 GKLFQIQILGLHGNPLSK 133
                +  L L GN ++K
Sbjct: 191 --PPSLTELHLDGNKITK 206

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N +T++    +  L NL  L +S N +  + +  G++ N         HL  L++N+
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTP-------HLRELHLNN 249

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSE-------IGDLIYLRELCLNNNNLRTL- 111
           N L ++ G ++    ++ + + NN +  + S                 + L +N ++   
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 112 --PYELGKLFQIQILGLHGN 129
             P     ++    + L   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 12/132 (9%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
             L  ++ +    +NL +L I++  L  +P    AV++L        +L  L ++ N ++
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHL-------VYLRFLNLSYNPIS 261

Query: 64  RLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKLFQ 120
            + G +   L+ L+ + +   +L  +       L YLR L ++ N L TL   +   +  
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 121 IQILGLHGNPLS 132
           ++ L L  NPL+
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +N+N ++ +     + L NLRTL + +N+L+ +P  +             ++LT L +++
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLSNLTKLDISE 113

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
           N +  L   +   L NL++L++ +N L Y+       L  L +L L   NL ++P E L 
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 117 KLFQIQILGLHGNPLSK 133
            L  + +L L    ++ 
Sbjct: 174 HLHGLIVLRLRHLNINA 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLP---------------SEIGAVKNLSP 44
           +   NLT + +  +S L  L  L + +  +  +                S    +  ++P
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 45  DLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELC 102
           +     +LT+L +   NLT +    +  L+ LR L++S N +  +   +  +L+ L+E+ 
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 103 LNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
           L    L  +       L  +++L + GN L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N +  L+  + +   +L  L+++ N +  +    GA  NL        +L  L +  
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNL-------FNLRTLGLRS 89

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
           N L  +   + + L NL  LDIS NK+  L   +  DL  L+ L + +N+L  + +    
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 117 KLFQIQILGLHGNPLSK 133
            L  ++ L L    L+ 
Sbjct: 150 GLNSLEQLTLEKCNLTS 166

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +      +   I      R LD+  N+++ L  +         +   F HL  L +N+N 
Sbjct: 19  HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQD---------EFASFPHLEELELNENI 67

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKL 118
           ++ +     + L NLRTL + +N+L+ +P  +   L  L +L ++ N +  L   +   L
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 119 FQIQILGLHGNPLSK 133
           + ++ L +  N L  
Sbjct: 128 YNLKSLEVGDNDLVY 142

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTHL 52
           N  NL+ L  ++     +  L+I+ N L  LP    +++ L          P+L     L
Sbjct: 67  NRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL--PASL 122

Query: 53  TALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
             L +++N LT L    +    L  ++  NN+L  LP        L  L + NN L  LP
Sbjct: 123 KHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLP 176

Query: 113 YELGKLFQIQILGLHGNPLS 132
                L   + L +  N L 
Sbjct: 177 ELPESL---EALDVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.6 bits (170), Expect = 7e-15
 Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
           +++N LT L    +    L  ++  NN+L  LP    +++ LS         P+L     
Sbjct: 127 VDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL--PES 181

Query: 52  LTALYMNDNNLTRLSGDISLLINLRT----LDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
           L AL ++ N L  L        +            N++ ++P  I  L     + L +N 
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241

Query: 108 LRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
           L +   E       Q                 N
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 5e-11
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 17/130 (13%)

Query: 4   NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
           N ++    D  S         +         S +                + L +N  NL
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--------LINQFSELQLNRLNL 71

Query: 63  TRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
           + L  ++     +  L+I+ N L  LP        L  L   +N L TLP     L   +
Sbjct: 72  SSLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPASL---K 123

Query: 123 ILGLHGNPLS 132
            L +  N L+
Sbjct: 124 HLDVDNNQLT 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 7e-15
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  NNLT  +  +     L  +D+S N+L  +               +   L  LY+++N
Sbjct: 239 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHP---------FVKMQRLERLYISNN 288

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  L+     +  L+ LD+S+N L ++         L  L L++N++ TL   L     
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 346

Query: 121 IQILGLHGNPLSKD 134
           ++ L L  N    +
Sbjct: 347 LKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 5e-11
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 18/140 (12%)

Query: 3   DNNLTRLSGDISL------LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
           D ++   + D+        L N + +   N+ +R LP+ +         L  F  +  L 
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---------LDSFRQVELLN 81

Query: 57  MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE 114
           +ND  +  +     +    ++ L +  N +RYLP  +  ++  L  L L  N+L +LP  
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 115 L-GKLFQIQILGLHGNPLSK 133
           +     ++  L +  N L +
Sbjct: 142 IFHNTPKLTTLSMSNNNLER 161

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N+L+ L   I      L TL +SNN L  +  +              T L  L ++ 
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT---------FQATTSLQNLQLSS 180

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           N LT +  D+SL+ +L   ++S N L    S +   I + EL  ++N++  +   +    
Sbjct: 181 NRLTHV--DLSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NV 232

Query: 120 QIQILGLHGNPLS 132
           ++ IL L  N L+
Sbjct: 233 ELTILKLQHNNLT 245

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + +N +T L   D      ++ LD+  N++  +                   L  L +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------ELAASSDTLEHLNLQY 178

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           N +  + G + +   L+TLD+S+NKL ++  E      +  + L NN L  +   L    
Sbjct: 179 NFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 120 QIQILGLHGNPLSKD 134
            ++   L GN     
Sbjct: 238 NLEHFDLRGNGFHCG 252

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 16/132 (12%), Positives = 39/132 (29%), Gaps = 13/132 (9%)

Query: 3   DNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            N +  ++     +    L  L++  N +  +  ++            F  L  L ++ N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------VFAKLKTLDLSSN 201

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  +  +      +  + + NNKL  +   +     L    L  N              
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 121 IQILGLHGNPLS 132
            ++  +    + 
Sbjct: 262 QRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-----------VKNLSPD-LWQ 48
           +N+N +  L        ++ TL  +NN +  +    G            +  L       
Sbjct: 87  LNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 49  FTHLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
            + +  L +  N +  ++     +    L  L++  N +  +  ++     L+ L L++N
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN 201

Query: 107 NLRTLPYELGKLFQIQILGLHGNPLS 132
            L  +  E      +  + L  N L 
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  N +  + G + +   L+TLD+S+NKL ++  E                +T + + +N
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNN 224

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  +   +    NL   D+  N               R   +    ++ L  +  +   
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
           +  LG +G    +D    + +     K   + L S Q
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 21/148 (14%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYL-PSEIGAVKNL------------SPDL 46
           + D++L +    +     N++ LD+S N L  +  +++     L            + DL
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76

Query: 47  WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
              + L  L +N+N +  L        ++ TL  +NN +  +    G     + + L NN
Sbjct: 77  ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQG--KKNIYLANN 130

Query: 107 NLRTLP-YELGKLFQIQILGLHGNPLSK 133
            +  L   + G   ++Q L L  N +  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT 158

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG---------AVKNLSPDLWQFTH 51
           ++ N L     D+  L  LRTLD++NN ++ L               +  +S        
Sbjct: 65  LSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQG 121

Query: 52  LTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNL 108
              +Y+ +N +T L   D      ++ LD+  N++  +           L  L L  N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
             +  ++    +++ L L  N L+ 
Sbjct: 182 YDVKGQVV-FAKLKTLDLSSNKLAF 205

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 13  ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISL 71
                  +   ++++ L+   + +              ++  L ++ N L+++S  D++ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQ---------SAWNVKELDLSGNPLSQISAADLAP 56

Query: 72  LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
              L  L++S+N L     ++  L  LR L LNNN ++ L         I+ L    N +
Sbjct: 57  FTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNI 111

Query: 132 SK 133
           S+
Sbjct: 112 SR 113

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 20/138 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS--------------PDL 46
           + +N L  +   +    NL   D+  N            KN                 + 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 47  WQFTHLTALYMNDNNLTRLSGDIS------LLINLRTLDISNNKLRYLPSEIGDLIYLRE 100
            + T  T  +        L    +             L    ++   L  E  +    RE
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 101 LCLNNNNLRTLPYELGKL 118
           +       RT+  ++   
Sbjct: 341 IDALKEQYRTVIDQVTLR 358

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
             + NL  L +  I  L  L+ L++++N ++          NL       T+L  L ++ 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNL-------TNLEHLDLSS 158

Query: 60  NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
           N +  +          + +   +LD+S N + ++       I L+EL L+ N L+++P  
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 115 -LGKLFQIQILGLHGNP 130
              +L  +Q + LH NP
Sbjct: 219 IFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N L  L S        L+ LD+S  +++ +    GA ++L       +HL+ L +  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSL-------SHLSTLILTG 85

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE--L 115
           N +  L+    S L +L+ L      L  L +   G L  L+EL + +N +++       
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 GKLFQIQILGLHGNPLS 132
             L  ++ L L  N + 
Sbjct: 146 SNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
           + + LD+S N LR+L S   +  +          L  L ++   +  +       L +L 
Sbjct: 29  STKNLDLSFNPLRHLGS--YSFFSF-------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 77  TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK 133
           TL ++ N ++ L       L  L++L     NL +L  + +G L  ++ L +  N +  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +   +  +       L +L TL ++ N ++ L    GA   L       + L  L   + 
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGL-------SSLQKLVAVET 110

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNLRTLPYE--- 114
           NL  L +  I  L  L+ L++++N ++         +L  L  L L++N ++++      
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 115 -LGKLFQIQI-LGLHGNPLS 132
            L ++  + + L L  NP++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 9e-12
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N +  L+    S L +L+ L      L  L +    + +L         L  L +  
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHL-------KTLKELNVAH 133

Query: 60  NNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGD-----LIYLRELCLNNNNLRTLP 112
           N +         S L NL  LD+S+NK++ +            +    L L+ N +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 113 YELGKLFQIQILGLHGNPLS 132
               K  +++ L L  N L 
Sbjct: 194 PGAFKEIRLKELALDTNQLK 213

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLS---------------PD 45
           +DN + ++   + S L N+  +++  N L     E GA   L                 D
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 46  LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL 103
           L     L  L+++ N +  +   D+     L  L + +N++R + +     L  LREL L
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 104 NNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
           +NN L  +P  L  L  +Q++ LH N ++K
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 19/140 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +++  LT +  D  L   L  L + +NK++ +  E         DL +++ L  L +  N
Sbjct: 179 ISEAKLTGIPKD--LPETLNELHLDHNKIQAIELE---------DLLRYSKLYRLGLGHN 227

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP------- 112
            +  +     S L  LR L + NNKL  +P+ + DL  L+ + L+ NN+  +        
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287

Query: 113 YELGKLFQIQILGLHGNPLS 132
               K      + L  NP+ 
Sbjct: 288 GFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 15/133 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +D  L  +  +IS   +   LD+ NN +  L  +         D     HL AL + +N 
Sbjct: 41  SDLGLKAVPKEISP--DTTLLDLQNNDISELRKD---------DFKGLQHLYALVLVNNK 89

Query: 62  LTRLS-GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
           ++++     S L  L+ L IS N L  +P  +     L EL +++N +R +P      L 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 120 QIQILGLHGNPLS 132
            +  + + GNPL 
Sbjct: 148 NMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 3   DNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +N+++ L   D   L +L  L + NNK+  +     A   L         L  LY++ N+
Sbjct: 63  NNDISELRKDDFKGLQHLYALVLVNNKISKIHE--KAFSPL-------RKLQKLYISKNH 113

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG--KL 118
           L  +  +  L  +L  L I +N++R +P  +   L  +  + +  N L    +E G    
Sbjct: 114 LVEIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 119 FQIQILGLHGNPLSK 133
            ++  L +    L+ 
Sbjct: 172 LKLNYLRISEAKLTG 186

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + +N ++++     S L  L+ L IS N L  +P  +             + L  L ++D
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL------------PSSLVELRIHD 132

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG--DLIYLRELCLNNNNLRTLPYELG 116
           N + ++   + S L N+  +++  N L     E G  D + L  L ++   L  +P +L 
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191

Query: 117 KLFQIQILGLHGNPLSK 133
               +  L L  N +  
Sbjct: 192 -PETLNELHLDHNKIQA 207

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 21/117 (17%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N +  +     S L  LR L + NNKL  +P            L     L  +Y++ 
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP----------AGLPDLKLLQVVYLHT 273

Query: 60  NNLTRLSGDI-------SLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNN 106
           NN+T++  +                + + NN + Y    P+    +     +   N 
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +++N L+R+   +  L  L+ + +  N +  +         +   + +  +   + + +N
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV--NDFCPVGFGV-KRAYYNGISLFNN 304

Query: 61  NLTRLS---GDISLLINLRTLDISNNK 84
            +            + +   +   N K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 5e-14
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 1   MNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLS--------------P 44
           + +N  T ++   +S    L +L +S N L   +PS +G++  L                
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 45  DLWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELC 102
           +L     L  L ++ N+LT  +   +S   NL  + +SNN+L   +P  IG L  L  L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 103 LNNNNLR-TLPYELGKLFQIQILGLHGNPLS 132
           L+NN+    +P ELG    +  L L+ N  +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 8   RLSGDI-----SLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
             SG++     +L  +L TLD+S+N     +   +               L  LY+ +N 
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--------PKNTLQELYLQNNG 405

Query: 62  LT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKL 118
            T ++   +S    L +L +S N L   +PS +G L  LR+L L  N L   +P EL  +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 119 FQIQILGLHGNPLS 132
             ++ L L  N L+
Sbjct: 466 KTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 24/146 (16%)

Query: 8   RLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLS--------------PDLWQFTH 51
           ++SGD+ +   +NL  LD+S+N        +G    L                 +   T 
Sbjct: 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 52  LTALYMNDNNLTRLSGDI--SLLINLRTLDISNNKLR-YLPSEI-GDLIYLRELCLNNNN 107
           L  L ++ N      G I    L +L+ L ++ NK    +P  + G    L  L L+ N+
Sbjct: 249 LKLLNISSNQ---FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

Query: 108 LR-TLPYELGKLFQIQILGLHGNPLS 132
               +P   G    ++ L L  N  S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNL------------SPDLW 47
           ++ NN +     +     L+ LDIS NKL       I     L                 
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 48  QFTHLTALYMNDNNLT-RLSGDIS-LLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLN 104
               L  L + +N  T  +   +S     L  LD+S N     +P   G    L  L L+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 105 NNNLR-TLPYE-LGKLFQIQILGLHGNPLS 132
           +NN    LP + L K+  +++L L  N  S
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 1   MNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N +  +    I      +    + N L +           S  L + +      +  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEF-------QGIRSEQLNRLSTRNPCNITS 617

Query: 60  NNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELG 116
                  S       ++  LD+S N L  Y+P EIG + YL  L L +N++  ++P E+G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 117 KLFQIQILGLHGNPLS 132
            L  + IL L  N L 
Sbjct: 678 DLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 27/148 (18%)

Query: 9   LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL----------------SPDLWQFTHL 52
           +S  +  L  L +L +SN+ +    S      +L                   L   + L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 53  TALYMNDNNLTRLSGDISLLIN---LRTLDISNNKLR-YLPSEI---GDLIYLRELCLNN 105
             L ++ N L    G +S  +    L  LD+S N +                L+ L ++ 
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 106 NNLR-TLPYELGKLFQIQILGLHGNPLS 132
           N +   +   + +   ++ L +  N  S
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
            + ++D+S+  L    S +      S  L   T L +L+++++++           +L +
Sbjct: 51  KVTSIDLSSKPLNVGFSAV------SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 78  LDISNNKLR---YLPSEIGDLIYLRELCLNNNNLR-TLPYELG-KLFQIQILGLHGNPLS 132
           LD+S N L       + +G    L+ L +++N L        G KL  +++L L  N +S
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 50  THLTALYMNDNNLTRLSGDISLLI----NLRTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
             +T++ ++   L      +S  +     L +L +SN+ +    S       L  L L+ 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 106 NNLR---TLPYELGKLFQIQILGLHGNPLS 132
           N+L    T    LG    ++ L +  N L 
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 3   DNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
                   S       ++  LD+S N L  Y+P EIG             +L  L +  N
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG----------SMPYLFILNLGHN 666

Query: 61  NLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNL 108
           +++  +  ++  L  L  LD+S+NKL   +P  +  L  L E+ L+NNNL
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 7e-14
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
           ++R L +++  L  L             L Q   +T L ++ N L  L   ++ L  L  
Sbjct: 442 DVRVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 78  LDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134
           L  S+N L  +   + +L  L+EL L NN L+       L    ++ +L L GN L ++
Sbjct: 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           + L      +     L+ +D               +   S    ++  +  L++   +LT
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK-FLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 64  RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI 123
            L   +  L+ +  LD+S+N+LR LP  +  L  L  L  ++N L  +   +  L ++Q 
Sbjct: 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512

Query: 124 LGLHGNPLS 132
           L L  N L 
Sbjct: 513 LLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 5e-09
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           + N L  L   ++ L  L  L  S+N L  +             +     L  L + +N 
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENV-----------DGVANLPRLQELLLCNNR 519

Query: 62  LTRLSG--DISLLINLRTLDISNNKLRYLPSEIGDLIYL 98
           L + +    +     L  L++  N L         L  +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 37/166 (22%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSP-DLWQFTHLTALYMNDNNL 62
           +       D +    L   ++S  K   L SE+ + K L   +      L  + +    L
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 63  TRLSGDISLLINL-----------------------------------RTLDISNNKLRY 87
             L  +   L                                      R L +++  L  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 88  LPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
           L   +  L+ +  L L++N LR LP  L  L  +++L    N L  
Sbjct: 456 LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 9e-14
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           NDN L  L   I   L NL TL +++NKL+ LP   G    L        +L  L ++ N
Sbjct: 69  NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI--GVFDQL-------VNLAELRLDRN 119

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GK 117
            L  L   +   L  L  L +  N+L+ LP  + D L  L+EL L NN L+ +P     K
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 118 LFQIQILGLHGNPLS 132
           L +++ L L  N L 
Sbjct: 180 LTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + DN L  L   +   L+NL  L +  N+L+ LP       +L       T LT L +  
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSL-------TKLTYLSLGY 142

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-G 116
           N L  L   +   L +L+ L + NN+L+ +P    D L  L+ L L+NN L+ +P     
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 117 KLFQIQILGLHGNP 130
            L ++++L L  NP
Sbjct: 203 SLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 12/118 (10%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
           + + LD+ +NKL  LPS   A   L       T L  LY+NDN L  L   I   L NL 
Sbjct: 38  DTKKLDLQSNKLSSLPS--KAFHRL-------TKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 77  TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
           TL +++NKL+ LP  + D L+ L EL L+ N L++LP  +   L ++  L L  N L 
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
           N  ++D S+ KL  +PS I                  L +  N L+ L       L  LR
Sbjct: 17  NKNSVDCSSKKLTAIPSNI------------PADTKKLDLQSNKLSSLPSKAFHRLTKLR 64

Query: 77  TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLSK 133
            L +++NKL+ LP+ I  +L  L  L + +N L+ LP  +  +L  +  L L  N L  
Sbjct: 65  LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 1   MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
              +NL ++S       L NL  LDIS+   R   + I             + L  L M 
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMA 453

Query: 59  DNNLTR--LSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE- 114
            N+     L    + L NL  LD+S  +L  L       L  L+ L + +N L+++P   
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 115 LGKLFQIQILGLHGNPLS 132
             +L  +Q + LH NP  
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           +N    +     L +L  LD+S N L +      +           T L  L ++ N + 
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-------TSLKYLDLSFNGVI 386

Query: 64  RLSGDISLLINLRTLDISNNKLRYLPSEI--GDLIYLRELCLNNNNLRTLPYE-LGKLFQ 120
            +S +   L  L  LD  ++ L+ +        L  L  L +++ + R         L  
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 121 IQILGLHGNPLS 132
           +++L + GN   
Sbjct: 447 LEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N +  +S +   L  L  LD  ++ L+ +        +L        +L  L ++  
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSL-------RNLIYLDISHT 431

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRY--LPSEIGDLIYLRELCLNNNNLRTLPYE-LG 116
           +     +G  + L +L  L ++ N  +   LP    +L  L  L L+   L  L      
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 117 KLFQIQILGLHGNPLS 132
            L  +Q+L +  N L 
Sbjct: 492 SLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            + N  ++  ++    + + LD+S N LR+L S            + F  L  L ++   
Sbjct: 15  MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY---------SFFSFPELQVLDLSRCE 63

Query: 62  LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKL 118
           +  +  G    L +L TL ++ N ++ L       L  L++L     NL +L    +G L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 119 FQIQILGLHGNPLS 132
             ++ L +  N + 
Sbjct: 124 KTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N L  L S        L+ LD+S  +++ +                 +HL+ L +  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTG 85

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--EL 115
           N +  L+ G  S L +L+ L      L  L +  IG L  L+EL + +N +++       
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 GKLFQIQILGLHGNPLSK 133
             L  ++ L L  N +  
Sbjct: 146 SNLTNLEHLDLSSNKIQS 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++   +  +  G    L +L TL ++ N ++ L                 + L  L   +
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVE 109

Query: 60  NNLTRLSGD-ISLLINLRTLDISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE-L 115
            NL  L    I  L  L+ L++++N ++    P    +L  L  L L++N ++++    L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 116 GKLFQIQI----LGLHGNPLSK 133
             L Q+ +    L L  NP++ 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 16/165 (9%)

Query: 1   MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
             + NL  L    I  L  L+ L++++N ++           L       T+L  L ++ 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSS 158

Query: 60  NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
           N +  +          + +   +LD+S N + ++       I L +L L NN      + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 113 YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
             +  L  +++  L       +      + +  + L +  ++  +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
           T          +P  +                  L ++ N L  L S        L+ LD
Sbjct: 11  TYQCMELNFYKIPDNL------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 80  ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
           +S  +++ +       L +L  L L  N +++L       L  +Q L      L+ 
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N+ NL +   D S L  L  L I   +L YL   +  + +L   L   T++++  +    
Sbjct: 239 NEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL---TNVSSFSLVSVT 293

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           + R+  D S     + L++ N K    P+    L  L+ L   +N       E+  L  +
Sbjct: 294 IERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSL 349

Query: 122 QILGLHGNPLSK 133
           + L L  N LS 
Sbjct: 350 EFLDLSRNGLSF 361

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 44  PDLWQFTHLTALYMNDNN-LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRE 100
             L    +LT LY+ +   L  L   D+  L  LR L I  + LR++  +       L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 101 LCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
           L L+ N L +L ++  +   +Q L L GNPL
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 4e-12
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNK-LRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             +        +    NL  L I N + L++L      ++ L         L  L +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGL-------GELRNLTIVKS 66

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
            L  ++ D       L  L++S N L  L  +    + L+EL L+ N L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N    +         +R L++S+  +R + + I               L  L +++N
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI------------PQTLEVLDVSNN 441

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
           NL   S     L  L+ L IS NKL+ LP        L  + ++ N L+++P     +L 
Sbjct: 442 NLDSFS---LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 120 QIQILGLHGNPL 131
            +Q + LH NP 
Sbjct: 498 SLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           + ++ +  +       L +L  LD+S N +     +  A K        +  L  L ++ 
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG------AWPSLQTLVLSQ 370

Query: 60  NNLTRLSGDISL---LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELG 116
           N+L  +     +   L NL +LDIS N    +P        +R L L++  +R +   + 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI- 429

Query: 117 KLFQIQILGLHGNPLS 132
               +++L +  N L 
Sbjct: 430 -PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 30/154 (19%)

Query: 1   MNDNNLTRL----SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
           +++N +       S       +L+TL +S N LR +      +  L        +LT+L 
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-------KNLTSLD 393

Query: 57  MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI------------------GDLIYL 98
           ++ N    +         +R L++S+  +R + + I                    L  L
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRL 453

Query: 99  RELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
           +EL ++ N L+TLP +      + ++ +  N L 
Sbjct: 454 QELYISRNKLKTLP-DASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
             + T +   ++    +++LD+S NK+ Y+            DL    +L  L +  + +
Sbjct: 14  SRSFTSIPSGLTA--AMKSLDLSFNKITYIGHG---------DLRACANLQVLILKSSRI 62

Query: 63  TRLSGDI-SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--ELGKL 118
             + GD    L +L  LD+S+N L  L S   G L  L+ L L  N  +TL        L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 119 FQIQILGLHGNPL 131
             +Q L +     
Sbjct: 123 TNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 19  LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRT 77
               D  +     +PS +               + +L ++ N +T +  GD+    NL+ 
Sbjct: 7   SGVCDGRSRSFTSIPSGL------------TAAMKSLDLSFNKITYIGHGDLRACANLQV 54

Query: 78  LDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
           L + ++++  +  +    L  L  L L++N+L +L     G L  ++ L L GNP  
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N +T +  GD+    NL+ L + ++++  +  +           +    L  L ++D
Sbjct: 33  LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---------FYSLGSLEHLDLSD 83

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-- 114
           N+L+ LS      L +L+ L++  N  + L   S   +L  L+ L + N    +      
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 115 LGKLFQIQILGLHGNPLSK 133
              L  +  L +    L  
Sbjct: 144 FAGLTSLNELEIKALSLRN 162

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  + +  + GD    L +L  LD+S+N L  L S               + L  L +  
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---------FGPLSSLKYLNLMG 107

Query: 60  NNLTRL--SGDISLLINLRTLDIS-NNKLRYLPSE-IGDLIYLRELCLNNNNLRTL-PYE 114
           N    L  +     L NL+TL I        +       L  L EL +   +LR      
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 115 LGKLFQIQILGLHGNPLS 132
           L  +  I  L LH +  +
Sbjct: 168 LKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 2   NDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           N +    +S    +  + +R L I    L Y  S +               +  + + ++
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV---------YSLLEKVKRITVENS 320

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYL----PSEIGDLIYLRELCLNNNNLRTLPYEL 115
            +  +       L +L  LD+S N +        +  G    L+ L L+ N+LR++    
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 116 G---KLFQIQILGLHGNPLSK 133
                L  +  L +  N    
Sbjct: 381 EILLTLKNLTSLDISRNTFHP 401

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           N L +L   I  L  +   D + N L         V +    + +   +  L++    L 
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLF 299

Query: 64  RL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTL----PYELGK 117
              S   SLL  ++ + + N+K+  +P      L  L  L L+ N +           G 
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 118 LFQIQILGLHGNPLSK 133
              +Q L L  N L  
Sbjct: 360 WPSLQTLVLSQNHLRS 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           N    + +   D + L +L  L+I    LR   S+          L     +  L ++ +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---------SLKSIRDIHHLTLHLS 182

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELC--LNNNNLRTLPYELGK 117
               L      +L ++R L++ +  L         +  +      L             +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 118 LFQIQILGLHGNPLS 132
           L ++    L  + + 
Sbjct: 243 LLKLLRYILELSEVE 257

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
                + ++   +S L   + L +S N        I  + +LS       +L  L +  N
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNN-------IEKISSLS----GMENLRILSLGRN 80

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKL 118
            + ++    ++   L  L IS N++  L S I  L+ LR L ++NN +       +L  L
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 119 FQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
            +++ L L GNPL  DY +         +++  L
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 13  ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLL 72
           I +    +++  +  +   L   I  ++ +   L        L ++ NN+ ++S  +S +
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGM 69

Query: 73  INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
            NLR L +  N ++ + +       L EL ++ N + +L   + KL  +++L +  N ++
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT 128

Query: 133 K 133
            
Sbjct: 129 N 129

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N +  +S +   L  L  LD  ++ L+ +  E     +L        +L  L ++  
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSL-------RNLIYLDISHT 136

Query: 61  NLTRLSGDI-SLLINLRTLDISNNK-LRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
           +       I + L +L  L ++ N        +I  +L  L  L L+   L  L      
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 117 KLFQIQILGLHGNPLS 132
            L  +Q+L +  N   
Sbjct: 197 SLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 1   MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEI---------------GAVKNLS 43
              +NL ++S       L NL  LDIS+   R   + I                  +N  
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 44  PDLWQ-FTHLTALYMNDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEI-GDLIYLRE 100
           PD++    +LT L ++   L +LS      L +L+ L++S+N    L +     L  L+ 
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 101 LCLNNNNLRTLPYEL--GKLFQIQILGLHGNPLS 132
           L  + N++ T   +        +  L L  N  +
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 16/136 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N   LT +   I    +   L++ +NKL+ LP   G    L       T LT L ++ N 
Sbjct: 15  NSKGLTSVPTGIP--SSATRLELESNKLQSLPH--GVFDKL-------TQLTKLSLSSNG 63

Query: 62  LTRLS---GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE--LG 116
           L+             +L+ LD+S N +  + S    L  L  L   ++NL+ +       
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 117 KLFQIQILGLHGNPLS 132
            L  +  L +      
Sbjct: 124 SLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
           +   +  ++  L  +P+ I             +  T L +  N L  L  G    L  L 
Sbjct: 8   SGTEIRCNSKGLTSVPTGI------------PSSATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 77  TLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
            L +S+N L +             L+ L L+ N + T+      L Q++ L    + L 
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 26/144 (18%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQF 49
               +  + G I  L NL  L+++ N++  +   +  +  L+              L   
Sbjct: 52  AGEKVASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISALQNL 109

Query: 50  THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
           T+L  LY+N++N++ +S  ++ L  + +L++  N      S + ++  L  L +  + ++
Sbjct: 110 TNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 110 TLPYELGKLFQIQILGLHGNPLSK 133
            +   +  L  +  L L+ N +  
Sbjct: 169 DVT-PIANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + +N +T LS  ++ L  L  L+I  N++  + +           +   T L  L +  N
Sbjct: 228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-----------VKDLTKLKMLNVGSN 275

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
            ++ +S  ++ L  L +L ++NN+L       IG L  L  L L+ N++  +   L  L 
Sbjct: 276 QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLS 333

Query: 120 QIQILGLHGNPLSK 133
           ++         + K
Sbjct: 334 KMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 7e-12
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQ 48
           +   ++T +      L ++  L ++  K+  +   I  + NL               L  
Sbjct: 29  LQKASVTDVVT-QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSN 86

Query: 49  FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
              LT LY+  N +T +S  +  L NLR L ++ + +  +   + +L  +  L L  N+ 
Sbjct: 87  LVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHN 144

Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
            +    L  +  +  L +  + +  
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
              N +T ++  ++ +  L +L I NNK+  L             L   + LT L +  N
Sbjct: 206 AYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-----------LANLSQLTWLEIGTN 253

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLF 119
            ++ ++  +  L  L+ L++ +N++  +   + +L  L  L LNNN L       +G L 
Sbjct: 254 QISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 120 QIQILGLHGNPLSK 133
            +  L L  N ++ 
Sbjct: 312 NLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 7e-11
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            ++ +  ++  I+ L +L +L ++ N++  +             L   T L       N 
Sbjct: 163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFTAYVNQ 210

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +T ++  ++ +  L +L I NNK+  L   + +L  L  L +  N +  +   +  L ++
Sbjct: 211 ITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKL 267

Query: 122 QILGLHGNPLSK 133
           ++L +  N +S 
Sbjct: 268 KMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
              + ++  D + L       +    +  + +             +   +T L +    +
Sbjct: 9   PAPINQIFPD-ADLAEGIRAVLQKASVTDVVT-----------QEELESITKLVVAGEKV 56

Query: 63  TRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
             + G I  L NL  L+++ N++  +   + +L+ L  L +  N +  +   L  L  ++
Sbjct: 57  ASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113

Query: 123 ILGLHGNPLSK 133
            L L+ + +S 
Sbjct: 114 ELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 10/82 (12%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 52  LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
              L      + ++  D + L       +    +  + +   +L  + +L +    + ++
Sbjct: 2   AATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 112 PYELGKLFQIQILGLHGNPLSK 133
              +  L  ++ L L+GN ++ 
Sbjct: 60  Q-GIEYLTNLEYLNLNGNQITD 80

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 6e-13
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + + +  L   + S   +L  L ++ N++  +              W  THL  L ++ N
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---------FWGLTHLLKLNLSQN 333

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LGK 117
            L  +   +   L  L  LD+S N +R L  +    L  L+EL L+ N L+++P     +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 118 LFQIQILGLHGNPL 131
           L  +Q + LH NP 
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
            ++T D+S +K+  L   +            FT L  L +  N + ++  +    L +L 
Sbjct: 276 GVKTCDLSKSKIFALLKSV---------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 77  TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
            L++S N L  + S + + L  L  L L+ N++R L  +    L  ++ L L  N L 
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N++  L     S L +L+ L +       +       + L       + L  L ++ 
Sbjct: 37  LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGL-------SSLIILKLDY 88

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYE- 114
           N   +L     + L NL  L ++   L            L  L  L L +NN++ +    
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 115 -LGKLFQIQILGLHGNPLS 132
               + +  +L L  N + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 22/171 (12%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + N   +L     + L NL  L ++   L          K L       T L  L + DN
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-------TSLEMLVLRDN 139

Query: 61  NLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGD---LIYLRELCLNNNNLRTLPYEL 115
           N+ ++        +     LD++ NK++ +  E        +   L L++  L+ +    
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 116 G---------KLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
                     K   I  L L GN   +   K + +     K+ S +L +  
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N + ++  +    L +L  L++S N L  + S     +NL         L  L ++ 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS--RMFENL-------DKLEVLDLSY 356

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLR 109
           N++  L       L NL+ L +  N+L+ +P  I D L  L+++ L+ N   
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 15/125 (12%)

Query: 14  SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL--SGDISL 71
            L  ++  +D+S N +  L     +   L         L  L +       +  +     
Sbjct: 27  ELPAHVNYVDLSLNSIAELNE--TSFSRL-------QDLQFLKVEQQTPGLVIRNNTFRG 77

Query: 72  LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG---KLFQIQILGLH 127
           L +L  L +  N+   L +     L  L  L L   NL            L  +++L L 
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 128 GNPLS 132
            N + 
Sbjct: 138 DNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 1   MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           + DNN+ ++        +     LD++ NK++ +      + N     +    L+++ + 
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLSSITLQ 193

Query: 59  DNNLTRLSGDISL----LINLRTLDISNNKLRYLPSEI----GDLIYLRELCLNNNNLRT 110
           D N   L  +         ++ TLD+S N  +   ++          ++ L L+N+    
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
             +              G   S 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASG 276

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI---SLL 72
           L +L  L + +N ++ +        N+            L +  N +  +  +       
Sbjct: 128 LTSLEMLVLRDNNIKKIQPA-SFFLNM-------RRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 73  INLRTLDISNNKLRYLPSEIGD---------LIYLRELCLNNNNLRTLP----YELGKLF 119
            +   L +S+  L+ +                  +  L L+ N  +       ++     
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 120 QIQILGLHGNPLSKD 134
           +IQ L L  +     
Sbjct: 240 KIQSLILSNSYNMGS 254

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
               L  LS      L  L  L++  N+L+ L +  G   +L       T L  L + +N
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--GVFDDL-------TELGTLGLANN 93

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GK 117
            L  L   +   L  L  L +  N+L+ LPS + D L  L+EL LN N L+++P     K
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 118 LFQIQILGLHGNPL 131
           L  +Q L L  N L
Sbjct: 154 LTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + N L  LS  +   L  L TL ++NN+L  LP  +        D    T L  LY+  N
Sbjct: 67  DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-------FD--HLTQLDKLYLGGN 117

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE---- 114
            L  L SG    L  L+ L ++ N+L+ +P+   D L  L+ L L+ N L+++P+     
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 115 LGKLFQIQILGLHGNP 130
           LGKL  I    L GN 
Sbjct: 178 LGKLQTIT---LFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
             LD+ +  L  L       + L       T LT L ++ N L  LS  +   L  L TL
Sbjct: 38  EKLDLQSTGLATLSD--ATFRGL-------TKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88

Query: 79  DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
            ++NN+L  LP  + D L  L +L L  N L++LP  +  +L +++ L L+ N L 
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 53  TALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRT 110
             L +    L  LS      L  L  L++  N+L+ L + + D L  L  L L NN L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 111 LPYEL-GKLFQIQILGLHGNPLSK 133
           LP  +   L Q+  L L GN L  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS 121

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +++NN+  ++   +  L  L  LD+ +N L  L         +   L   +HL  L +  
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY-FLKGLSHLHILNLES 545

Query: 60  NNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-- 115
           N    +  +    L  L+ +D+  N L  LP+ +  + + L+ L L  N + ++  ++  
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 116 GKLFQIQILGLHGNPLS 132
                +  L +  NP  
Sbjct: 606 PAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 1   MNDNNLTRL---SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
           +    L  +         L NL  LD+SNN +  +  ++         L     L  L +
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM---------LEGLEKLEILDL 511

Query: 58  NDNNLTRLSGD---------ISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNN 107
             NNL RL            +  L +L  L++ +N    +P E   DL  L+ + L  NN
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 108 LRTLPYE-LGKLFQIQILGLHGNPLS 132
           L TLP         ++ L L  N ++
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N L RL + + +    L +LD+  N +  L  E+           +   L  L +  
Sbjct: 32  LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------CQKLPMLKVLNLQH 82

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LG 116
           N L++LS    +   NL  L + +N ++ + +        L  L L++N L +       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 117 KLFQIQILGLHGNPLSK 133
           +L  +Q L L  N +  
Sbjct: 143 QLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 15/138 (10%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N L++LS    +   NL  L + +N ++ + +             +  +L  L ++ 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP---------FVKQKNLITLDLSH 130

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE---IGDLIYLRELCLNNNNLRTL-PYE 114
           N L+    G    L NL+ L +SNNK++ L SE   I     L++L L++N ++   P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 115 LGKLFQIQILGLHGNPLS 132
              + ++  L L+   L 
Sbjct: 191 FHAIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +   LT++  D+    N+  L++++N+LR LP+          +  +++ LT+L +  N 
Sbjct: 12  SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAA---------NFTRYSQLTSLDVGFNT 60

Query: 62  LTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL-PYELGKL 118
           +++L       L  L+ L++ +N+L  L  +       L EL L +N+++ +      K 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 119 FQIQILGLHGNPLS 132
             +  L L  N LS
Sbjct: 121 KNLITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 17  INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINL 75
           ++    D S+ KL  +P ++             T++T L +  N L RL + + +    L
Sbjct: 4   VSHEVADCSHLKLTQVPDDL------------PTNITVLNLTHNQLRRLPAANFTRYSQL 51

Query: 76  RTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK 133
            +LD+  N +  L P     L  L+ L L +N L  L          +  L L  N + K
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 24/147 (16%)

Query: 1   MNDNNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           +  N + +     +   L N+  + +S NK   L                   L  L + 
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS---------FALVPSLQRLMLR 462

Query: 59  DNNLTRL---SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--- 111
              L  +         L NL  LD+SNN +  +  + +  L  L  L L +NNL  L   
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 112 ------PYELGKLFQIQILGLHGNPLS 132
                  Y L  L  + IL L  N   
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 24/155 (15%)

Query: 2   NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPS-------------------EIGAVKN 41
           +  +L ++       L  L  L++ +N +  + S                    +  + N
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 42  LSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYL--PSEIGDLIYL 98
            +      + L  L +  N ++++ S   S L +L  LD+  N++       E   L  +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 99  RELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLS 132
            E+ L+ N    L       +  +Q L L    L 
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 1   MNDNNLTRLSGDISL---LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
           ++++ L+  S    L     NL  LD+S N L  + ++                L   ++
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---------FAWLPQLEYFFL 279

Query: 58  NDNNLTRL-SGDISLLINLRTLDISNNKLRYL----------PSEIGDLIYLRELCLNNN 106
             NN+  L S  +  L N+R L++  +  +                  L  L  L + +N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 107 NLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
           ++  +       L  ++ L L  +  S   +      +     L  L
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 19/129 (14%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLIN 74
             ++R L +SN++L    +             ++T+LT L ++ NNL  +  D  + L  
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFL-------GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 75  LRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL----------PYELGKLFQIQI 123
           L    +  N +++L    +  L  +R L L  +  +             +    L  ++ 
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 124 LGLHGNPLS 132
           L +  N + 
Sbjct: 334 LNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 1   MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N    +  +    L  L+ +D+  N L  LP+ +               L +L +  
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV---------FNNQVSLKSLNLQK 593

Query: 60  NNLTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
           N +T +   +      NL  LD+  N        I     +  +   + N+  L    
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHTNIPELSSHY 649

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            N++++  + G I  L N+  L ++ NKL    ++I  + NL        +L  L++++N
Sbjct: 50  ANNSDIKSVQG-IQYLPNVTKLFLNGNKL----TDIKPLTNL-------KNLGWLFLDEN 97

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            +  LS  +  L  L++L + +N +  +   +  L  L  L L NN +  +   L +L +
Sbjct: 98  KIKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTK 154

Query: 121 IQILGLHGNPLSK 133
           +  L L  N +S 
Sbjct: 155 LDTLSLEDNQISD 167

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
                + ++  D          ++    +    +             +   +  +  N++
Sbjct: 6   TVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNS 53

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
           ++  + G I  L N+  L ++ NKL  +   + +L  L  L L+ N ++ L   L  L +
Sbjct: 54  DIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKK 110

Query: 121 IQILGLHGNPLSK 133
           ++ L L  N +S 
Sbjct: 111 LKSLSLEHNGISD 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + +N +T ++  +S L  L TL + +N++  +             L   T L  LY++ N
Sbjct: 138 LGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKN 185

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
           +++ L   ++ L NL  L++ + +    P      + +     N +     P  +     
Sbjct: 186 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQ 146
            +   +  +         +       
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA------- 54
           N+  L+ L        +L +L  S N L  LP    ++K+L  D      L+        
Sbjct: 79  NNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135

Query: 55  LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
           L +++N L +L  ++     L+ +D+ NN L+ LP        L  +   NN L  LP E
Sbjct: 136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELP-E 190

Query: 115 LGKLFQIQILGLHGNPLSK 133
           L  L  +  +    N L K
Sbjct: 191 LQNLPFLTAIYADNNSLKK 209

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
             +N L  L  ++  L  L  +   NN L+ LP    +++++          P+L     
Sbjct: 180 AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 238

Query: 52  LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
           LT +Y ++N L  L        +L  L++ +N L  LP     L +L       + L  L
Sbjct: 239 LTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295

Query: 112 PYELGKL 118
           P  L  L
Sbjct: 296 PPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKL-RYLPSEIGAVKNLSPDL---WQFTHLTALYM 57
           + +NLT +  +   + +      + ++  R  P   G  + ++              L +
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 58  NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGK 117
           N+  L+ L        +L +L  S N L  LP     L  L     N   L  LP  L  
Sbjct: 79  NNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135

Query: 118 L 118
           L
Sbjct: 136 L 136

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
           + DN LT L        +L  LD+S N    L      +  L+          DL     
Sbjct: 264 VRDNYLTDLPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP--PS 318

Query: 52  LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
           L  L +++N L  L         L  L  S N L  +P    +   L++L +  N LR  
Sbjct: 319 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREF 372

Query: 112 PYELGKL 118
           P     +
Sbjct: 373 PDIPESV 379

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY----MNDNNLTRLSGDISL 71
              L+     ++ L  +P E   VK+ +     ++               +        L
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 72  LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
                 L+++N  L  LP        L  L  + N+L  LP     L  + +   +   L
Sbjct: 70  DRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 132 S 132
           S
Sbjct: 127 S 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 28/155 (18%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFT-------HLT 53
            + N +  L     L  +L  L++SNNKL  LP+    ++ L               +L 
Sbjct: 304 ASSNEIRSLCD---LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLK 360

Query: 54  ALYMNDNNLTRLSGDISLLI----------------NLRTLDISNNKLRYLPSEIGDLIY 97
            L++  N L         +                 NL+ L +  N LR  P     +  
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420

Query: 98  LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
           LR    +   +    +      +++      +   
Sbjct: 421 LR--MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 26/150 (17%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +++N L  L         L  L  S N L  +P                 +L  L++  N
Sbjct: 324 VSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ-------------NLKQLHVEYN 367

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L         + +LR     N+ L  +P    +   L++L +  N LR  P     +  
Sbjct: 368 PLREFPDIPESVEDLR----MNSHLAEVPELPQN---LKQLHVETNPLREFPDIPESV-- 418

Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLS 150
            + L ++   +   Y   +   +  +  + 
Sbjct: 419 -EDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 42  LSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL-RYLPSEIGDLIY--- 97
           ++P     T L     + +NLT +  +   + +      + ++  R  P   G+      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 98  ----------LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
                       EL LNN  L +LP     L   + L    N L++
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTE 105

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 18/135 (13%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +DN +T+L  G    LINL+ L + +N+L  LP  +        D    T LT L +  N
Sbjct: 48  HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------FD--SLTQLTVLDLGTN 98

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE----L 115
            LT L S     L++L+ L +  NKL  LP  I  L +L  L L+ N L+++P+     L
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 116 GKLFQIQILGLHGNP 130
             L       L GNP
Sbjct: 159 SSLTHAY---LFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
           + L + +N++  L    G   +L        +L  LY+  N L  L   +   L  L  L
Sbjct: 43  QILYLHDNQITKLEP--GVFDSL-------INLKELYLGSNQLGALPVGVFDSLTQLTVL 93

Query: 79  DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
           D+  N+L  LPS + D L++L+EL +  N L  LP  + +L  +  L L  N L
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N L  L   +   L  L  LD+  N+L  LPS       L        HL  L+M  
Sbjct: 71  LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS--AVFDRL-------VHLKELFMCC 121

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
           N LT L   I  L +L  L +  N+L+ +P    D L  L    L  N
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
            N   +S     L +L  LD+S N L +      +             L  L ++ N   
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-------NSLRHLDLSFNGAI 389

Query: 64  RLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQ 120
            +S +   L  L+ LD  ++ L+ +   S    L  L  L ++  N +         L  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 121 IQILGLHGNPLS 132
           +  L + GN   
Sbjct: 450 LNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 12/138 (8%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++  N      G    L +L TL ++ N  +           LS      T+LT L ++ 
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT--------LSNVFANTTNLTFLDLSK 482

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGK 117
             L ++S  +   L  L+ L++S+N L +L S     L  L  L  + N + T    L  
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 118 LF-QIQILGLHGNPLSKD 134
               +    L  N ++  
Sbjct: 543 FPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
           D  L+++  DI    + + +D+S N L+ L S              F+ L  L ++   +
Sbjct: 20  DQKLSKVPDDIPS--STKNIDLSFNPLKILKSY---------SFSNFSELQWLDLSRCEI 68

Query: 63  TRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
             +       L +L  L ++ N ++         L  L  L      L +L    +G+L 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 120 QIQILGLHGNPLS 132
            ++ L +  N + 
Sbjct: 129 TLKKLNVAHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL----------WQFTHLT 53
           N+ +        L N+  + ++   ++YL       K  S  +               L 
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

Query: 54  ALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS---EIGDLIYLRELCLNNNNLRT 110
           +L +  N  + +S     L +L  LD+S N L +             LR L L+ N    
Sbjct: 332 SLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 111 LPYELGKLFQIQILGLHGNPLS 132
           +      L ++Q L    + L 
Sbjct: 391 MSANFMGLEELQHLDFQHSTLK 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 4   NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
           N L  L S   S    L+ LD+S  ++  +     A   L        HL+ L +  N +
Sbjct: 42  NPLKILKSYSFSNFSELQWLDLSRCEIETIED--KAWHGL-------HHLSNLILTGNPI 92

Query: 63  TRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRT--LPYELGKL 118
              S G  S L +L  L     KL  L S  IG LI L++L + +N + +  LP     L
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 119 FQIQILGLHGNPLS 132
             +  + L  N + 
Sbjct: 153 TNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
           T    + KL  +P +I             +    + ++ N L  L S   S    L+ LD
Sbjct: 15  TYQCMDQKLSKVPDDI------------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 80  ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
           +S  ++  +  +    L +L  L L  N +++        L  ++ L      L+ 
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 1   MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
             +  L  L    I  LI L+ L++++N +            L       T+L  + ++ 
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--------LPAYFSNLTNLVHVDLSY 162

Query: 60  NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
           N +  ++ +             +LD+S N + ++  +    I L EL L  N   +  + 
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 113 YELGKLFQIQILGLHGNPLS 132
             L  L  + +  L      
Sbjct: 223 TCLQNLAGLHVHRLILGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ NL      I   L ++   +           +I     L+       +++A+ +   
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-------NVSAMSLAGV 295

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
           ++  L  D+      ++L I   +L+  P+   DL +L+ L L  N   ++ ++   L  
Sbjct: 296 SIKYLE-DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPS 351

Query: 121 IQILGLHGNPLSK 133
           +  L L  N LS 
Sbjct: 352 LSYLDLSRNALSF 364

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 8   RLSGDI----SLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLW----QFT-------- 50
            LSG +    S L NL  +    N++   +P   G+   L   +     + T        
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 51  --HLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
             +L  + ++ N L    S       N + + ++ N L +   ++G    L  L L NN 
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 108 LR-TLPYELGKLFQIQILGLHGNPLS 132
           +  TLP  L +L  +  L +  N L 
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 11  GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI- 69
              +    +  LD+S   L            +   L    +L  LY+   N   L G I 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLP-------KPYPIPSSLANLPYLNFLYIGGIN--NLVGPIP 94

Query: 70  ---SLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQIL 124
              + L  L  L I++  +   +P  +  +  L  L  + N L  TLP  +  L  +  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 125 GLHGNPLS 132
              GN +S
Sbjct: 155 TFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 21/151 (13%)

Query: 2   NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLS--------------PD 45
             NNL   +   I+ L  L  L I++  +   +P  +  +K L               P 
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 46  LWQFTHLTALYMNDNNLT-RLSGDISLLINLRT-LDISNNKLR-YLPSEIGDLIYLRELC 102
           +    +L  +  + N ++  +         L T + IS N+L   +P    +L  L  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 103 LNNNNLR-TLPYELGKLFQIQILGLHGNPLS 132
           L+ N L        G     Q + L  N L+
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)

Query: 8   RLSGDISLLI---NLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           RL+G I       NL  +D+S N L        G+ KN             +++  N+L 
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT----------QKIHLAKNSLA 234

Query: 64  RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQI 121
              G + L  NL  LD+ NN++   LP  +  L +L  L ++ NNL   +P + G L + 
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

Query: 122 QILGLHGNP 130
            +     N 
Sbjct: 294 DVSAYANNK 302

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
             N L  +   +  L NL  L ++ N+L+ LP+  G    L       T+L  L + +N 
Sbjct: 71  GGNKLHDI-SALKELTNLTYLILTGNQLQSLPN--GVFDKL-------TNLKELVLVENQ 120

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKL 118
           L  L   +   L NL  L++++N+L+ LP  + D L  L EL L+ N L++LP  +  KL
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180

Query: 119 FQIQILGLHGNPL 131
            Q++ L L+ N L
Sbjct: 181 TQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             N L  L   +   L NL+ L +  N+L+ LP  +           + T+LT L +  N
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD---------KLTNLTYLNLAHN 143

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE---- 114
            L  L  G    L NL  LD+S N+L+ LP  + D L  L++L L  N L+++P      
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

Query: 115 LGKLFQIQILGLHGNP 130
           L  L  I    LH NP
Sbjct: 204 LTSLQYIW---LHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLD 79
            T+ +S    +  P +             F       +   ++T       L  ++  + 
Sbjct: 1   ETITVSTPIKQIFPDDA------------FAETIKANLKKKSVTDAVTQNEL-NSIDQII 47

Query: 80  ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIY 139
            +N+ ++ +   I  L  +R L L  N L  +   L +L  +  L L GN L      ++
Sbjct: 48  ANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVF 105

Query: 140 NEPNGTQKL 148
           ++    ++L
Sbjct: 106 DKLTNLKEL 114

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.0 bits (148), Expect = 8e-12
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +  N L        +  N+ +L+  +  L  L S                 +  L ++ N
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----ESILVLNLSSN 438

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
            LT       L   ++ LD+ NN++  +P ++  L  L+EL + +N L+++P     +L 
Sbjct: 439 MLTGSVFR-CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 120 QIQILGLHGNP 130
            +Q + LH NP
Sbjct: 498 SLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
             + L +S N +  L            D+   + L  L ++ N +  L   +     +L 
Sbjct: 53  RTKALSLSQNSISELRMP---------DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103

Query: 77  TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSK 133
            LD+S+N+L+ +      +  LR L L+ N+   LP   E G L ++  LGL      +
Sbjct: 104 YLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 14/160 (8%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N+++ L   DIS L  LR L +S+N++R L                   L  L ++ 
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFN-------QDLEYLDVSH 109

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGK 117
           N L  +S     + +LR LD+S N    LP   E G+L  L  L L+    R L      
Sbjct: 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 118 LFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
              +  + L          +  +       +L  +     
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
              N  T       S L  L+TL +  N L+                    ++++L   D
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL----------MTKNMSSLETLD 409

Query: 60  NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
            +L  L+        +   ++  L++S+N L            ++ L L+NN + ++P +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIMSIPKD 468

Query: 115 LGKLFQIQILGLHGNPL 131
           +  L  +Q L +  N L
Sbjct: 469 VTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 16/150 (10%), Positives = 40/150 (26%), Gaps = 11/150 (7%)

Query: 5   NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR 64
           +    +   + L +L    + N    +    +            F  +    ++ ++   
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALY---------SVFAEMNIKMLSISDTPF 343

Query: 65  L-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKLFQIQ 122
           +         +   L+ + N       +    L  L+ L L  N L+           + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 123 ILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
            L      L+      Y+      + +  L
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVL 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 21/151 (13%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------------- 43
            ++N LT     +   L  L TL +  N+L+ L         +                 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 44  --PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLREL 101
              D      L +L M+ N LT       L   ++ LD+ +NK++ +P ++  L  L+EL
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449

Query: 102 CLNNNNLRTLPYE-LGKLFQIQILGLHGNPL 131
            + +N L+++P     +L  +Q + LH NP 
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 16/150 (10%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           N L  +  D+S       L+IS N +  L +          D+   + L  L ++ N + 
Sbjct: 10  NGLIHVPKDLSQ--KTTILNISQNYISELWTS---------DILSLSKLRILIISHNRIQ 58

Query: 64  RLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQ 120
            L   +      L  LD+S+NKL  +       + L+ L L+ N    LP   E G + Q
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLS 150
           ++ LGL    L K  +      N ++ LL 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
            +D S N L ++P ++                T L ++ N ++ L + DI  L  LR L 
Sbjct: 4   LVDRSKNGLIHVPKDL------------SQKTTILNISQNYISELWTSDILSLSKLRILI 51

Query: 80  ISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
           IS+N+++YL   +      L  L L++N L  +         ++ L L  N   
Sbjct: 52  ISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFD 103

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N ++ L + DI  L  LR L IS+N+++YL   +               L  L ++ 
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV---------FKFNQELEYLDLSH 78

Query: 60  NNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGK 117
           N L ++S      +NL+ LD+S N    LP   E G++  L+ L L+  +L         
Sbjct: 79  NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 118 LFQIQILGLHGNPLSKDY 135
              I  + L       + 
Sbjct: 137 HLNISKVLLVLGETYGEK 154

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 16  LINLRTLDISNNKLRYLPSE-----------------IGAVKNLSPDLWQFTHLTALYMN 58
           +     LD SNN L     E                 +  +  ++    Q   L  L ++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 59  DNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELG 116
            N+++     GD S   +L +L++S+N L            ++ L L++N ++++P ++ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVV 441

Query: 117 KLFQIQILGLHGNPLS 132
           KL  +Q L +  N L 
Sbjct: 442 KLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLIN 74
           L  L    + ++   +  S I            F+++       +    +     S +  
Sbjct: 275 LKALSIHQVVSDVFGFPQSYI---------YEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 75  LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG---KLFQIQILGLHGNP 130
              LD SNN L     E  G L  L  L L  N L+ L        ++  +Q L +  N 
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 131 LSKDYMK 137
           +S D  K
Sbjct: 386 VSYDEKK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ + L   S      L  L+ L++  N       +       +  L     L  L ++ 
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ------KTNSLQTLGRLEILVLSF 485

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGK 117
            +L+ +     + L  +  +D+S+N+L     E    +    L L +N++  +    L  
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 118 LFQIQILGLHGNPLS 132
           L Q + + L  NPL 
Sbjct: 546 LSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 15/138 (10%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +   +L+ L   +  L  L+ L +S NK   L                F  LT L +  N
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS---------ASNFPSLTHLSIKGN 335

Query: 61  NL--TRLSGDISLLINLRTLDISNNKLRYLPS---EIGDLIYLRELCLNNNNLRTLPYE- 114
                  +G +  L NLR LD+S++ +        ++ +L +L+ L L+ N   +L  E 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 115 LGKLFQIQILGLHGNPLS 132
             +  Q+++L L    L 
Sbjct: 396 FKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            +  L  + G +    +   L+ S N L  + +             +  +LT L +    
Sbjct: 20  ENLGLNEIPGTLPN--STECLEFSFNVLPTIQNT---------TFSRLINLTFLDLTRCQ 68

Query: 62  LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTL-PYELGKL 118
           +  +          L TL ++ N L ++          L+ L      + ++    L   
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 119 FQIQILGLHGNPLS 132
             ++ L L  N +S
Sbjct: 129 KTLESLYLGSNHIS 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
            + N L  + +   S LINL  LD++  ++ ++  +                L  L +  
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT---------FQSQHRLDTLVLTA 90

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELG 116
           N L  ++   +S    L+ L      +  +    + +   L  L L +N++ ++   +  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 117 KLFQIQILGLHGNPLS 132
              ++++L    N + 
Sbjct: 151 PTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 11/137 (8%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +N N++  +          ++L+    +   +  +      +         L      D 
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-------SLWLGTFEDM 238

Query: 61  NLTRLSGDI---SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
           +   +S  +      +++ ++++  +    + S        L+EL L   +L  LP  L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 117 KLFQIQILGLHGNPLSK 133
            L  ++ L L  N    
Sbjct: 299 GLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +D +++    +    +++ ++++  +    + S              F+ L  L +   +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---------FHCFSGLQELDLTATH 289

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--PYELGKL 118
           L+ L   +  L  L+ L +S NK   L      +   L  L +  N  R       L  L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 119 FQIQILGLHGNPLSK 133
             ++ L L  + +  
Sbjct: 350 ENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 15/139 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N    L +        L  LD++  +L+   ++    +NL         L  L ++ 
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-SPFQNL-------HLLKVLNLSH 434

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYL----PSEIGDLIYLRELCLNNNNLRTLP-Y 113
           + L   S      L  L+ L++  N          + +  L  L  L L+  +L ++  +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 114 ELGKLFQIQILGLHGNPLS 132
               L  +  + L  N L+
Sbjct: 495 AFTSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 10/134 (7%)

Query: 2   NDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             N L    G  +  + +L      +     +            +      + ++ +  +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS-------PAVFEGLCEMSVESINLQKH 264

Query: 61  NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP-YELGKL 118
               +S +       L+ LD++   L  LPS +  L  L++L L+ N    L        
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 119 FQIQILGLHGNPLS 132
             +  L + GN   
Sbjct: 325 PSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 15/117 (12%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78
           +T +  N  L  +P  +                  L  + N L  + +   S LINL  L
Sbjct: 15  KTYNCENLGLNEIPGTL------------PNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 79  DISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
           D++  ++ ++  +       L  L L  N L  +    L     ++ L      +S 
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 1   MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
                ++ +    +     L +L + +N +  +              +    L  L   +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK---------GFPTEKLKVLDFQN 162

Query: 60  NNLTRLS-GDISLLINLR--TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-- 114
           N +  LS  D+S L      +L+++ N +  +     D    + L         + ++  
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 115 -LGKLFQIQILGLHGNPLSK 133
               +  + +          
Sbjct: 223 KNSTIQSLWLGTFEDMDDED 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ ++L       +  + N+  L +   +   L      V   S    +   L    ++ 
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE--IFVDVTSSV--ECLELRDTDLDT 236

Query: 60  NNLTRLSGDISL----LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE- 114
            + + LS   +         R + I++  L  +   +  +  L EL  + N L+++P   
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

Query: 115 LGKLFQIQILGLHGNPL 131
             +L  +Q + LH NP 
Sbjct: 297 FDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             N +  +  D  S L +L  LD+S N L  L S     K L       + LT L +  N
Sbjct: 84  TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS--SWFKPL-------SSLTFLNLLGN 134

Query: 61  NLTRLSGDI--SLLINLRTLDISNN-KLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-L 115
               L      S L  L+ L + N      +  +    L +L EL ++ ++L++   + L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 116 GKLFQIQILGLHGNPLSK 133
             +  +  L LH      
Sbjct: 195 KSIQNVSHLILHMKQHIL 212

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 2   NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           N +  T++   D + L  L  L+I  + L+       ++K++        +++ L ++  
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP--KSLKSI-------QNVSHLILHMK 208

Query: 61  NLTRLS-GDISLLINLRTLDISNNKLRYLPSE---------IGDLIYLRELCLNNNNLRT 110
               L    + +  ++  L++ +  L               +      R + + + +L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 111 LPYELGKLFQIQILGLHGNPLS 132
           +   L ++  +  L    N L 
Sbjct: 269 VMKLLNQISGLLELEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 13/113 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +  +L  +   ++    +++LD+SNN++ Y+ +          DL +  +L AL +  N 
Sbjct: 39  SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS---------DLQRCVNLQALVLTSNG 87

Query: 62  LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
           +  +  D  S L +L  LD+S N L  L S     L  L  L L  N  +TL 
Sbjct: 88  INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 53  TALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTL 111
           T LY++ N  T +  ++S   +L  +D+SNN++  L ++    +  L  L L+ N LR +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 112 PYEL-GKLFQIQILGLHGNPLS 132
           P      L  +++L LHGN +S
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 40/135 (29%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           + N  T +  ++S   +L  +D+SNN++  L ++             F+++T        
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS------------FSNMT-------- 78

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELG 116
                        L TL +S N+LR +P    D L  LR L L+ N++  +P     +L 
Sbjct: 79  ------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126

Query: 117 KLFQIQILGLHGNPL 131
            L  +    +  NPL
Sbjct: 127 ALSHLA---IGANPL 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 1   MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
              +NL ++S       L NL  LDIS+   R   + I             + L  L M 
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMA 453

Query: 59  DNNLTR--LSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYE 114
            N+     L    + L NL  LD+S  +L  L P+    L  L+ L +++NN  +L  + 
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 115 LGKLFQIQILGLHGNPLS 132
              L  +Q+L    N + 
Sbjct: 514 YKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 1   MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++ N L  L S        L+ LD+S  +++ +                 +HL+ L +  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTG 85

Query: 60  NNLTRLS-GDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL--PYEL 115
           N +  L+ G  S L +L+ L      L  L    IG L  L+EL + +N +++   P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 GKLFQIQILGLHGNPLS 132
             L  ++ L L  N + 
Sbjct: 146 SNLTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            + N  ++  ++    + + LD+S N LR+L          S   + F  L  L ++   
Sbjct: 15  MELNFYKIPDNLP--FSTKNLDLSFNPLRHLG---------SYSFFSFPELQVLDLSRCE 63

Query: 62  LTRL-SGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKL 118
           +  +  G    L +L TL ++ N ++ L       L  L++L     NL +L  + +G L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 119 FQIQILGLHGNPLS 132
             ++ L +  N + 
Sbjct: 124 KTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
           +N    +     L +L  LD+S N L +      +           T L  L ++ N + 
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-------TSLKYLDLSFNGVI 386

Query: 64  RLSGDISLLINLRTLDISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQ 120
            +S +   L  L  LD  ++ L+ +   S    L  L  L +++ + R         L  
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 121 IQILGLHGNPLSK 133
           +++L + GN   +
Sbjct: 447 LEVLKMAGNSFQE 459

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 16/146 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI----------GAVKNLSPDLWQFTH 51
               + R+  D S     + L++ N K    P+                  +        
Sbjct: 290 VSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 52  LTALYMNDNNLTRL---SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
           L  L ++ N L+     S       +L+ LD+S N +  + S    L  L  L   ++NL
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 109 RTLPYE--LGKLFQIQILGLHGNPLS 132
           + +        L  +  L +      
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTR 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 1   MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
             + NL  L    I  L  L+ L++++N ++           L       T+L  L ++ 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSS 158

Query: 60  NNLTRLS-GDISLLINLR----TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
           N +  +   D+ +L  +     +LD+S N + ++       I L +L L NN      + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 113 YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
             +  L  +++  L       +   +        + L  L
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNL 257

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
           T          +P  +                  L ++ N L  L S        L+ LD
Sbjct: 11  TYQCMELNFYKIPDNL------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 80  ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSK 133
           +S  +++ +       L +L  L L  N +++L       L  +Q L      L+ 
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           N+ NL +   D S L  L  L I   +L YL   +    ++       T++++  +    
Sbjct: 239 NEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLD---DIIDLFNCLTNVSSFSLVSVT 293

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           + R+  D S     + L++ N K    P+    L  L+ L   +N      +    L  +
Sbjct: 294 IERVK-DFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKG-GNAFSEVDLPSL 349

Query: 122 QILGLHGNPLSK 133
           + L L  N LS 
Sbjct: 350 EFLDLSRNGLSF 361

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 14/113 (12%)

Query: 1   MNDNNLTR--LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           M  N+     L    + L NL  LD+S  +L  L                 + L  L M+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---------FNSLSSLQVLNMS 502

Query: 59  DNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI--GDLIYLRELCLNNNNL 108
            NN   L       L +L+ LD S N +     +        L  L L  N+ 
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + +N ++ L+  +S L  L  L +  N++  +             L   T LT L +N+N
Sbjct: 250 LANNQISNLAP-LSGLTKLTELKLGANQISNISP-----------LAGLTALTNLELNEN 297

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  +S  IS L NL  L +  N +  + S +  L  L+ L   NN +  +   L  L  
Sbjct: 298 QLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS-SLANLTN 354

Query: 121 IQILGLHGNPLS 132
           I  L    N +S
Sbjct: 355 INWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 3   DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQFT 50
            N +T L   ++ L  L  LDIS+NK+  +   +  + NL               L   T
Sbjct: 164 GNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 221

Query: 51  HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
           +L  L +N N L  +   ++ L NL  LD++NN++  L   +  L  L EL L  N +  
Sbjct: 222 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISN 279

Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
           +   L  L  +  L L+ N L  
Sbjct: 280 IS-PLAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
           +N+N L  +S  IS L NL  L +  N +  + S + ++  L               L  
Sbjct: 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSLAN 351

Query: 49  FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
            T++  L    N ++ L+  ++ L  +  L +++      P      + +     N    
Sbjct: 352 LTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 109 RTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
              P  +          +  N  S      Y 
Sbjct: 411 LIAPATISDGGSYTEPDITWNLPSYTNEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            D  + ++  D + L       +    +    S                 +T L  +   
Sbjct: 10  QDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS-----------QTDLDQVTTLQADRLG 57

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +  + G +  L NL  ++ SNN+L  +   + +L  L ++ +NNN +  +   L  L  +
Sbjct: 58  IKSIDG-VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNL 114

Query: 122 QILGLHGNPLSK 133
             L L  N ++ 
Sbjct: 115 TGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +   +  + G +  L NL  ++ SNN+L  +             L   T L  + MN+N 
Sbjct: 54  DRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-----------LKNLTKLVDILMNNNQ 101

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +  ++  ++ L NL  L + NN++  +   + +L  L  L L++N +  +   L  L  +
Sbjct: 102 IADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSL 158

Query: 122 QILGLHGNPLS 132
           Q L        
Sbjct: 159 QQLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 18/145 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
           ++ N ++ +S  +S L +L+ L   N      P  +  +  L               L +
Sbjct: 141 LSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK 197

Query: 49  FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
            T+L +L   +N ++ ++  + +L NL  L ++ N+L+ + + +  L  L +L L NN +
Sbjct: 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQI 255

Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
             L   L  L ++  L L  N +S 
Sbjct: 256 SNLA-PLSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
              N+T      + L  + TL      ++ +             +    +LT +  ++N 
Sbjct: 32  GKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-----------VEYLNNLTQINFSNNQ 79

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           LT ++  +  L  L  + ++NN++  +   + +L  L  L L NN +  +   L  L  +
Sbjct: 80  LTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNL 136

Query: 122 QILGLHGNPLSK 133
             L L  N +S 
Sbjct: 137 NRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             +N ++ +S  ++ L N+  L   +N++  L             L   T +T L +ND 
Sbjct: 338 FYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP-----------LANLTRITQLGLNDQ 385

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
             T    +    +++     +       P+ I D     E  +  N             Q
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 121 IQILGLHGNPLS 132
              +G      S
Sbjct: 446 PVTIGKGTTTFS 457

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 1   MNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           +N N  +  SGD   S   +L  L +  N L+         +         +HL  LY+N
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET----ELCWDVFEGLSHLQVLYLN 488

Query: 59  DNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGK 117
            N L  L   +   L  LR L +++N+L  L         L  L ++ N L         
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPN--PDV 545

Query: 118 LFQIQILGLHGNPLSKD 134
              + +L +  N    +
Sbjct: 546 FVSLSVLDITHNKFICE 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 1   MNDNNLTRLSGDI---SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
              +N+     +        ++R LD+S+  +  L S +               L  L +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---------FETLKDLKVLNL 297

Query: 58  NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE- 114
             N + +++ +    L NL+ L++S N L  L S     L  +  + L  N++  +  + 
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 115 LGKLFQIQILGLHGNPLSKDYM 136
              L ++Q L L  N L+  + 
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHF 379

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           ++   +  L+  +   L +L+ L+++ NK+  +  E           +   +L  L ++ 
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA---------FYGLDNLQVLNLSY 323

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGK 117
           N L  L       L  +  +D+  N +  +  +    L  L+ L L +N L T+ +    
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---- 379

Query: 118 LFQIQILGLHGNPLS 132
           +  I  + L GN L 
Sbjct: 380 IPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 1   MNDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
           +++N L  L     L  + +L+ L ++ N+      +            +   L  L++ 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ--------TPSENPSLEQLFLG 459

Query: 59  DNNLTRL------SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTL 111
           +N L               L +L+ L +++N L  LP  +   L  LR L LN+N L  L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

Query: 112 PYELGKLFQIQILGLHGNPLS 132
            +       ++IL +  N L 
Sbjct: 520 SHND-LPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N + +++ +    L NL+ L++S N L  L S            +    +  + +  
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN---------FYGLPKVAYIDLQK 347

Query: 60  NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKL 118
           N++  +       L  L+TLD+ +N L    + I  +  + ++ L+ N L TLP      
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKI---N 400

Query: 119 FQIQILGLHGNPLS 132
               ++ L  N L 
Sbjct: 401 LTANLIHLSENRLE 414

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 18/139 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
               NLT++   ++       L +S N +R + +                 L  L +   
Sbjct: 11  YRFCNLTQVPQVLN---TTERLLLSFNYIRTVTAS---------SFPFLEQLQLLELGSQ 58

Query: 61  NLTRL--SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE--- 114
                        L NLR LD+ ++K+ +L  +    L +L EL L    L     +   
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 115 LGKLFQIQILGLHGNPLSK 133
              L  +  L L  N +  
Sbjct: 119 FRNLKALTRLDLSKNQIRS 137

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD---ISLL 72
           L NLR LD+ ++K+ +L  +               HL  L +    L+           L
Sbjct: 72  LPNLRILDLGSSKIYFLHPDA---------FQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 73  INLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNLRTLPYELGKLFQ---IQILGLH 127
             L  LD+S N++R L      G L  L+ +  ++N +  +     +  Q   +    L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 128 GNPLSKDYMKIYNEPNGTQKLLS 150
            N L       + +     + + 
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMV 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQF 49
           ++ N L  L       L  +  +D+  N +  +  +               N    +   
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380

Query: 50  THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNN 107
             +  ++++ N L  L     + +    + +S N+L  L     +  + +L+ L LN N 
Sbjct: 381 PSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 108 LRTLPYE--LGKLFQIQILGLHGNPLS 132
             +   +    +   ++ L L  N L 
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  + +  L  D    L +L  L +    L     + G  +NL         LT L ++ 
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-------KALTRLDLSK 132

Query: 60  NNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGD---LIYLRELCLNNNNLRTLP-- 112
           N +  L        L +L+++D S+N++  +     +      L    L  N+L +    
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 113 -----YELGKLFQIQILGLHGNPLSKDYMKI-YNEPNGTQKLLSYLLDSLQ 157
                    +   ++IL + GN  + D      N  + +Q     L   + 
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 16  LINLRTLDISNNKLRYLPSEI---GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI--- 69
            + L  LD+S N      +        K+ +  L    H+       +N+     +    
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 70  SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLH 127
               ++R LD+S+  +  L S +   L  L+ L L  N +  +  E    L  +Q+L L 
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 128 GNPLS 132
            N L 
Sbjct: 323 YNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78
           R        L  +P  +                  L ++ N +  + +     L  L+ L
Sbjct: 7   RIAFYRFCNLTQVPQVL-------------NTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 79  DISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
           ++ +             +L  LR L L ++ +  L  +    LF +  L L+   LS 
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 19/137 (13%)

Query: 1   MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           +  N+L  L  G    L +L  L +  NKL+ LP+ +           + T LT L ++ 
Sbjct: 35  LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN---------KLTSLTYLNLST 85

Query: 60  NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE--- 114
           N L  L +G    L  L+ L ++ N+L+ LP  + D L  L++L L  N L+++P     
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 115 -LGKLFQIQILGLHGNP 130
            L  L  I    LH NP
Sbjct: 146 RLTSLQYIW---LHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 12/115 (10%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
             LD+  N L+ LP+  G    L       T LT LY+  N L  L   + + L +L  L
Sbjct: 31  TYLDLETNSLKSLPN--GVFDEL-------TSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81

Query: 79  DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
           ++S N+L+ LP+ + D L  L+EL LN N L++LP  +  KL Q++ L L+ N L
Sbjct: 82  NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           + N L  +S  I+ L +++TLD+++ ++  +             L   ++L  LY++ N 
Sbjct: 93  SGNPLKNVSA-IAGLQSIKTLDLTSTQITDVT-----------PLAGLSNLQVLYLDLNQ 140

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +T +S  ++ L NL+ L I N ++  L + + +L  L  L  ++N +  +   L  L  +
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS-PLASLPNL 197

Query: 122 QILGLHGNPLSK 133
             + L  N +S 
Sbjct: 198 IEVHLKNNQISD 209

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
              +N+T      + L  + TL      +  +             +    +L  L + DN
Sbjct: 26  AGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG-----------VQYLNNLIGLELKDN 73

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            +T L+  +  L  +  L++S N L+ + S I  L  ++ L L +  +  +   L  L  
Sbjct: 74  QITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSN 130

Query: 121 IQILGLHGNPLSK 133
           +Q+L L  N ++ 
Sbjct: 131 LQVLYLDLNQITN 143

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           ++ N +T +S  ++ L NL+ L I N ++  L             L   + LT L  +DN
Sbjct: 136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-----------LANLSKLTTLKADDN 183

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            ++ +S  ++ L NL  + + NN++  + S + +   L  + L N  +   P        
Sbjct: 184 KISDISP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 121 I 121
           +
Sbjct: 242 V 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
               +  +  D   L N   +    + +    +                 +T L      
Sbjct: 5   QPTAINVIFPD-PALANAIKIAAGKSNVTDTVT-----------QADLDGITTLSAFGTG 52

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +T + G +  L NL  L++ +N++  L + + +L  + EL L+ N L+ +   +  L  I
Sbjct: 53  VTTIEG-VQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVS-AIAGLQSI 109

Query: 122 QILGLHGNPLSK 133
           + L L    ++ 
Sbjct: 110 KTLDLTSTQITD 121

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 16/116 (13%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINLRTL 78
           T+D +   L+ +P +I       P      H T L +NDN L R+S  G    L +L  L
Sbjct: 12  TVDCTGRGLKEIPRDI-------P-----LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 79  DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
           ++  N+L  +     +   +++EL L  N ++ +  ++   L Q++ L L+ N +S
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 2   NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
           NDN L R+S  G    L +L  L++  N+L  +     A +         +H+  L + +
Sbjct: 37  NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP--NAFEGA-------SHIQELQLGE 87

Query: 60  NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
           N +  + +     L  L+TL++ +N++  +     + L  L  L L +N
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 15/133 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            N++++  + G I  L N+  L ++ NKL  +             L    +L  L++++N
Sbjct: 53  ANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-----------KPLANLKNLGWLFLDEN 100

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            +  LS  +  L  L++L + +N +  +   +  L  L  L L NN +  +   L +L +
Sbjct: 101 KVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTK 157

Query: 121 IQILGLHGNPLSK 133
           +  L L  N +S 
Sbjct: 158 LDTLSLEDNQISD 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +++N +  LS  +  L  L++L + +N +  +             L     L +LY+ +N
Sbjct: 97  LDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-----------LVHLPQLESLYLGNN 144

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            +T ++  +S L  L TL + +N++  +   +  L  L+ L L+ N++  L   L  L  
Sbjct: 145 KITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLR-ALAGLKN 201

Query: 121 IQILGLHGNPLSKD 134
           + +L L        
Sbjct: 202 LDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
               + ++  D          ++    +    +             +   +  +  N+++
Sbjct: 10  VPTPIKQIFSD-DAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNSD 57

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +  + G I  L N+  L ++ NKL  +   + +L  L  L L+ N ++ L   L  L ++
Sbjct: 58  IKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS-SLKDLKKL 114

Query: 122 QILGLHGNPLSK 133
           + L L  N +S 
Sbjct: 115 KSLSLEHNGISD 126

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           + +N +T ++  +S L  L TL + +N++  +             L   T L  LY++ N
Sbjct: 141 LGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKN 188

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNL 108
           +++ L   ++ L NL  L++ + +    P +   +L+    +   + +L
Sbjct: 189 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
            +  R LD+   K       I  ++NL   L       A+  +DN + +L G   LL  L
Sbjct: 18  AVRDRELDLRGYK-------IPVIENLGATL---DQFDAIDFSDNEIRKLDG-FPLLRRL 66

Query: 76  RTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS 132
           +TL ++NN++  +   +   L  L EL L NN+L  L     L  L  +  L +  NP++
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 133 KD 134
             
Sbjct: 127 NK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 43  SPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELC 102
           +           L +    +  +    + L     +D S+N++R L      L  L+ L 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLL 70

Query: 103 LNNNNLRTLPYELG-KLFQIQILGLHGNPLS 132
           +NNN +  +   L   L  +  L L  N L 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            + N+T L+G I    N++ L I+N       +    +  L       ++L  L +   +
Sbjct: 52  ANINVTDLTG-IEYAHNIKDLTINNIHA----TNYNPISGL-------SNLERLRIMGKD 99

Query: 62  LTRLS-GDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
           +T     ++S L +L  LDIS++     + ++I  L  +  + L+ N   T    L  L 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 120 QIQILGLHGNPLSK 133
           +++ L +  + +  
Sbjct: 160 ELKSLNIQFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
           + +L  + ++N            V +L+  +    ++  L +N+ + T  +  IS L NL
Sbjct: 43  MNSLTYITLANIN----------VTDLTG-IEYAHNIKDLTINNIHATNYNP-ISGLSNL 90

Query: 76  RTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
             L I    +       +  L  L  L ++++         +  L ++  + L  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 134 D 134
           D
Sbjct: 151 D 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 48  QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
           Q   LT + + + N+T L+G I    N++ L I+N       + I  L  L  L +   +
Sbjct: 42  QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 108 LRTLPYE-LGKLFQIQILGLHGNPLS 132
           + +     L  L  + +L +  +   
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             NNL  ++ +    L NL+ L ISN  +++LP                     L + DN
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH---------KIHSLQKVLLDIQDN 138

Query: 61  N-LTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYE-L 115
             +  +  +    L      L ++ N ++ + +   +   L EL L +NNNL  LP +  
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 116 GKLFQIQILGLHGNPLS 132
                  IL +    + 
Sbjct: 199 HGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            ++ +T +  D+    N   L     KLR +    GA             L  + ++ N+
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQK--GAFSGF-------GDLEKIEISQND 65

Query: 62  LTRL--SGDISLLINLRTLDISN-NKLRYLPSEI-GDLIYLRELCLNNNNLRTLP-YELG 116
           +  +  +   S L  L  + I   N L Y+  E   +L  L+ L ++N  ++ LP     
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 117 KLFQIQILGLHGNP 130
              Q  +L +  N 
Sbjct: 126 HSLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 4   NNLTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
            N+  +  +    L      L ++ N ++ +              +  T L  L ++DNN
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIH----------NSAFNGTQLDELNLSDNN 188

Query: 62  -LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKL 118
            L  L  D+         LDIS  ++  LPS    +L  LR    +  NL+ LP  L KL
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPT-LEKL 245

Query: 119 FQIQILGLHGN 129
             +    L   
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
           + R      +K+  +PS++              +   L      L  +  G  S   +L 
Sbjct: 10  SNRVFLCQESKVTEIPSDL------------PRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 77  TLDISNNK-LRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
            ++IS N  L  + +++  +L  L E+ +   NNL  +  E    L  +Q L +    + 
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 133 K 133
            
Sbjct: 118 H 118

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 1   MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
            ++NNL  L  D+         LDIS  ++  LPS                +L  L    
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG------------LENLKKLRARS 232

Query: 60  NNLTRLSGDISLLINLRTLDISNN 83
               +    +  L+ L    ++  
Sbjct: 233 TYNLKKLPTLEKLVALMEASLTYP 256

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 16/133 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
            +++N+  L+G +    NL+ L +S+N++    S++  +K+L       T L  L +N N
Sbjct: 48  GDNSNIQSLAG-MQFFTNLKELHLSHNQI----SDLSPLKDL-------TKLEELSVNRN 95

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            L  L+G  S    L  L + NN+LR     +  L  L  L + NN L+++   LG L +
Sbjct: 96  RLKNLNGIPSA--CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSK 151

Query: 121 IQILGLHGNPLSK 133
           +++L LHGN ++ 
Sbjct: 152 LEVLDLHGNEITN 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 16/133 (12%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +   ++T L      L  ++  +  N+ ++ L             +  FT+L  L+++ N
Sbjct: 26  LGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG-----------MQFFTNLKELHLSHN 73

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            ++ LS  +  L  L  L ++ N+L+ L         L  L L+NN LR     L  L  
Sbjct: 74  QISDLSP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTD-SLIHLKN 129

Query: 121 IQILGLHGNPLSK 133
           ++IL +  N L  
Sbjct: 130 LEILSIRNNKLKS 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
               + ++  D   L N    ++    +  L S             + + +     +++N
Sbjct: 5   RPTPINQVFPD-PGLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSN 52

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +  L+G +    NL+ L +S+N++  L S + DL  L EL +N N L+ L         +
Sbjct: 53  IQSLAG-MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACL 108

Query: 122 QILGLHGNPLSK 133
             L L  N L  
Sbjct: 109 SRLFLDNNELRD 120

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           ++N L      +  L NL  L I NNKL+ +             L   + L  L ++ N 
Sbjct: 114 DNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM-----------LGFLSKLEVLDLHGNE 161

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
           +T   G ++ L  +  +D++  K    P +    +Y+     + +     PY +
Sbjct: 162 ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 21/116 (18%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
           T+D S   L  +P+ I       P     T    LY+ DN +T+L  G    L  L  LD
Sbjct: 13  TVDCSGKSLASVPTGI-------P-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60

Query: 80  ISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNP 130
           + NN+L  LP+ + D L  L +L LN+N L+++P      L  L  I    L  NP
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW---LLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 74  NLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
             + L + +N++  L   + D L  L  L L+NN L  LP  +  KL Q+  L L+ N L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 21/116 (18%)

Query: 21  TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
            ++  N +L  +P+ I       P     T    L++N+N +T+L  G    L+NL+ L 
Sbjct: 16  LVNCQNIRLASVPAGI-------P-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63

Query: 80  ISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNP 130
            ++NKL  +P+ + D L  L +L LN+N+L+++P      L  L  I    L+ NP
Sbjct: 64  FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY---LYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 74  NLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
           + + L ++NN++  L   + D L+ L++L  N+N L  +P  +  KL Q+  L L+ N L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 10  SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI 69
             D++    L  LD     +  L            DL Q   L  LY+N+  LT L  D+
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITEL------------DLSQNPKLVYLYLNNTELTEL--DV 335

Query: 70  SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQIL 124
           S    L++L   N  ++     +G +  L           T+P E      + I 
Sbjct: 336 SHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
                   +     L  L +LD  N+ +  +             + + T LT L    NN
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDM-----------TGIEKLTGLTKLICTSNN 75

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           +T L  D+S   NL  L   +NKL  L   +  L  L  L  + N L  L   + +   +
Sbjct: 76  ITTL--DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129

Query: 122 QILGLHGNPLSK 133
             L    N L++
Sbjct: 130 TYLNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 4   NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
            N      D++    L TLD S NK+  L            D+ Q   L  L  + NN+T
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITEL------------DVSQNKLLNRLNCDTNNIT 204

Query: 64  RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI 123
           +L  D++  I L  LD S+NKL  +   +  L  L     + N L  L   +  L ++  
Sbjct: 205 KL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTT 258

Query: 124 LGLHGNPLSK 133
           L      L +
Sbjct: 259 LHCIQTDLLE 268

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 19/131 (14%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           +++++T ++G I  L  L  L  ++N +  L            DL Q T+LT L  + N 
Sbjct: 50  HNSSITDMTG-IEKLTGLTKLICTSNNITTL------------DLSQNTNLTYLACDSNK 96

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           LT L  D++ L  L  L+   NKL  L   +     L  L    N L  +   +    Q+
Sbjct: 97  LTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQL 150

Query: 122 QILGLHGNPLS 132
             L  H N   
Sbjct: 151 TELDCHLNKKI 161

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL-----------SPDLWQFT 50
           + NN+T+L  D++  I L  LD S+NKL  +   +  +  L             D+   +
Sbjct: 199 DTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS 254

Query: 51  HLTALYMNDNNLTRLS--------------------GDISLLINLRTLDISNNKLRYLPS 90
            LT L+    +L  +                      D++    L  LD     +  L  
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD- 313

Query: 91  EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
            +     L  L LNN  L  L   +    +++ L      + 
Sbjct: 314 -LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
              NN+T L  D+S   NL  L   +NKL  L             +   T LT L  + N
Sbjct: 71  CTSNNITTL--DLSQNTNLTYLACDSNKLTNLD------------VTPLTKLTYLNCDTN 116

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
            LT+L  D+S    L  L+ + N L  +   +     L EL  + N   T   ++    Q
Sbjct: 117 KLTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQ 171

Query: 121 IQILGLHGNPLS 132
           +  L    N ++
Sbjct: 172 LTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 20/130 (15%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           + N +T L  D+S    L  L+   N +  L            DL Q   LT L  + N 
Sbjct: 178 SFNKITEL--DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNK 223

Query: 62  LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
           LT +  D++ L  L   D S N L  L   +  L  L  L     +L  +   L    Q+
Sbjct: 224 LTEI--DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQL 277

Query: 122 QILGLHGNPL 131
                 G   
Sbjct: 278 IYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 26  NNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL 85
           +N    + +        +    Q   LT+L  +++++T ++G I  L  L  L  ++N +
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76

Query: 86  RYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
             L   +     L  L  ++N L  L   +  L ++  L    N L+K
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK 120

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
                +T L  D+S    L  L ++N +L  L            D+   T L +L   + 
Sbjct: 304 CQAAGITEL--DLSQNPKLVYLYLNNTELTEL------------DVSHNTKLKSLSCVNA 349

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
           ++   S  +  +  L     +  +   +P E      L      + 
Sbjct: 350 HIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 1   MNDNNLTRLSGDISLLI----NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
           + +  +   SG  S L      L+ LD+S+N LR                   + L +L 
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--------SQLNSLN 259

Query: 57  MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
           ++   L ++     L   L  LD+S N+L   PS   +L  +  L L  N  
Sbjct: 260 LSFTGLKQVPK--GLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI--SLLI 73
              L+ L + N  +        A+            L  L ++ N+L   +G        
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSAL------AAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 74  NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
            L +L++S   L+ +P  +     L  L L+ N L   P    +L Q+  L L GNP 
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 18/145 (12%)

Query: 1   MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
           + +  +T         +   +L  L++ N       + +  ++           L  L +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK-----PGLKVLSI 156

Query: 58  NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-----GDLIYLRELCLNNNNLRTL 111
              +    S + + +   L TLD+S+N        I          L+ L L N  + T 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 112 PYELGKLF----QIQILGLHGNPLS 132
                 L     Q+Q L L  N L 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLR 241

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 10/143 (6%)

Query: 19  LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR---LSGDISLLINL 75
           +++L +    +R        +      +   + L  L + +  +T         +   +L
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGAL-RVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 76  RTLDISNNKLRYLPSEIGDLI-----YLRELCLNNNNLRTLPYELGKLFQ-IQILGLHGN 129
             L++ N       + + +L       L+ L +   +      E  ++F  +  L L  N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 130 PLSKDYMKIYNEPNGTQKLLSYL 152
           P   +   I          L  L
Sbjct: 184 PELGERGLISALCPLKFPTLQVL 206

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 53  TALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRT 110
           T L +  N L  L  G    L  L  L +S N+++ LP  + D L  L  L L+ N L++
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 111 LPYEL-GKLFQIQILGLHGNPL 131
           LP  +  KL Q++ L L  N L
Sbjct: 91  LPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 2   NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
             N L  L  G    L  L  L +S N+++ LP   G    L       T LT LY+++N
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKL-------TKLTILYLHEN 86

Query: 61  NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
            L  L +G    L  L+ L +  N+L+ +P  I D L  L+++ L+ N
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 18/136 (13%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
              ++ R+    SL  + +TL +    LR +PS   A  NL        +++ +Y++ + 
Sbjct: 19  TCKDIQRIP---SLPPSTQTLKLIETHLRTIPS--HAFSNL-------PNISRIYVSIDV 66

Query: 62  -LTRLSGDI-SLLINLRTLDISNNK-LRYLPSEI-GDLIYLRELCLNNNNLRTLP--YEL 115
            L +L       L  +  ++I N + L Y+  +   +L  L+ L + N  L+  P   ++
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 116 GKLFQIQILGLHGNPL 131
                  IL +  NP 
Sbjct: 127 YSTDIFFILEITDNPY 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 15/138 (10%)

Query: 2   NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           N  NLT +  D    L  L+ L I N  L+  P            ++       L + DN
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--------VYSTDIFFILEITDN 140

Query: 61  N-LTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN-LRTLPYEL- 115
             +T +  +    L     TL + NN    +     +   L  + LN N  L  +  +  
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 116 -GKLFQIQILGLHGNPLS 132
            G      +L +    ++
Sbjct: 201 GGVYSGPSLLDVSQTSVT 218

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
             +N  ++ G  +  +NL  L + N  L  +            +L +   L  L +++N 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNLPKLPKLKKLELSENR 82

Query: 62  LTRLSGDIS-LLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNN 106
           +      ++  L NL  L++S NKL+ + +   +  L  L+ L L N 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 2   NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
           + +N  +L G       L  L   N  L  +            +L +   L  L ++DN 
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKLNKLKKLELSDNR 75

Query: 62  LTRLSGDIS-LLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNN 106
           ++     ++    NL  L++S NK++ L +   +  L  L+ L L N 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.66
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.26
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.98

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=8.9e-21  Score=136.10  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=14.0

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCc
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPS   34 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~   34 (157)
                      +|.++.+|..+..+++|+.|++++|.++.+|+
T Consensus       113 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A          113 AAGLMELPDTMQQFAGLETLTLARNPLRALPA  144 (328)
T ss_dssp             SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred             CCCccchhHHHhccCCCCEEECCCCccccCcH
Confidence            34444444444444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.3e-20  Score=135.31  Aligned_cols=147  Identities=21%  Similarity=0.329  Sum_probs=107.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCc-ccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLT-RLS   66 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~-~~~   66 (157)
                      +++|.++.+|+.+..+++|+.|++++|.++.+|+.++.+             ..+|+.+..+++|++|++++|.+. .+|
T Consensus        88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A           88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             EESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred             ccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence            357889999988999999999999999999888766533             345777777888888888886544 445


Q ss_pred             cccc---------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049          67 GDIS---------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        67 ~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~  137 (157)
                      ..+.         .+++|+.|++++|.++.+|..+..+++|++|++++|.++.+|..+.++++|+++++++|.+.+.+|.
T Consensus       168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence            4433         3667777777777777777777777777777777777777766677777777777777777766666


Q ss_pred             hhcCCCChHH
Q psy3049         138 IYNEPNGTQK  147 (157)
Q Consensus       138 ~~~~~~~l~~  147 (157)
                      .++.++.++.
T Consensus       248 ~~~~l~~L~~  257 (328)
T 4fcg_A          248 IFGGRAPLKR  257 (328)
T ss_dssp             CTTCCCCCCE
T ss_pred             HhcCCCCCCE
Confidence            6665555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=6.5e-19  Score=120.46  Aligned_cols=125  Identities=34%  Similarity=0.520  Sum_probs=103.0

Q ss_pred             CCCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEE
Q psy3049           1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L   78 (157)
                      +++|.|+.++ ..+..+++|+.|++++|+++.++...         +..+++|++|++++|.++.+++. +..+++|+.|
T Consensus        47 Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---------cccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            4677777764 34777888888888888887766542         55778899999999999887654 6788999999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ++++|.++.+|..+..+++|++|++++|+++.++.. +..+++|+.+++++|++.+.
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999999999998888999999999999999988754 78899999999999998865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=118.87  Aligned_cols=125  Identities=24%  Similarity=0.356  Sum_probs=88.4

Q ss_pred             CCCCCCCccch--hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccE
Q psy3049           1 MNDNNLTRLSG--DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~   77 (157)
                      +++|.|+.+++  .+..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.+++ .+..+++|++
T Consensus        39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            34566665532  256666666666666666665542         25567778888888888877654 3677788888


Q ss_pred             EeccCCCCCCC-ChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCCh
Q psy3049          78 LDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        78 L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      |++++|.++.+ |..+..+++|+.|++++|+++.+ |..+..+++|+++++++|++.+.
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            88888888766 45677778888888888888876 45677788888888888887765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=1.3e-18  Score=118.39  Aligned_cols=124  Identities=28%  Similarity=0.383  Sum_probs=87.6

Q ss_pred             CCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           2 NDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      ++|.|+.+++ .+..+++|+.|++++|.++.+++         ..+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus        40 ~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP---------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT---------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH---------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            4555555554 35566666666666666665432         2355677788888888888877654 56778888888


Q ss_pred             ccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          80 ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        80 l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +++|.++.+ +..+..+++|+.|++++|.++.++.. +..+++|+++++++|++.+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            888888766 45677778888888888888877654 77788888888888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=5.9e-19  Score=122.09  Aligned_cols=134  Identities=26%  Similarity=0.446  Sum_probs=78.9

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCCC-------------CCC-hhhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAVK-------------NLS-PDLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~~-------------~~~-~~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.++.+++. +..+++|+.|++++|.++.+++. +..++             .++ ..+..+++|++|++++|.++.
T Consensus        42 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  121 (251)
T 3m19_A           42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS  121 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence            456777766653 77778888888888877765543 22111             112 223455566666666666665


Q ss_pred             cccc-ccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCCh
Q psy3049          65 LSGD-ISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        65 ~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +++. +..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++. .+..+++|+++++++|++.+.
T Consensus       122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5433 3556666666666666665544 45556666666666666665543 355666666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=3.6e-18  Score=120.63  Aligned_cols=135  Identities=30%  Similarity=0.365  Sum_probs=93.6

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEecc
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDIS   81 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~   81 (157)
                      +|.|+.+|..+..+++|+.|++++|+++.+++         ..+..+++|++|++++|.++.+++. +..+++|+.|+++
T Consensus        86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCcCCcCchhhccCCCCCEEECCCCcCcccCH---------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            34444444444444444444444444444332         2356778888888888888877643 5678888899998


Q ss_pred             CCCCCCCChh-hhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHh
Q psy3049          82 NNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD  154 (157)
Q Consensus        82 ~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~  154 (157)
                      +|.++.+|.. +..+++|+.|++++|+++.+|..+...++|+++++++|++.+.        +.+..+..|+.+
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~--------c~~~~l~~wl~~  222 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN--------CEILYFRRWLQD  222 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS--------GGGHHHHHHHHH
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc--------CccHHHHHHHHh
Confidence            8888888764 5668888999999998888888888888899999999988765        344555556543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1e-18  Score=118.83  Aligned_cols=134  Identities=20%  Similarity=0.351  Sum_probs=115.6

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+.  ..++.|++++|.++.+++.         .+..+++|+.|++++|.++.+ +..+..+++|++|++
T Consensus        19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~---------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPG---------AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL   87 (220)
T ss_dssp             TTSCCSSCCSSCC--TTCCEEECCSSCCCEECTT---------SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred             CCCCcCcCCCccC--cCCCEEECCCCcCCCcCHh---------HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence            5788899987654  6899999999999988764         256788999999999999977 567889999999999


Q ss_pred             cCCCCCCCChh-hhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++|.++.+|.. +..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..+..+..++.++
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            99999998764 678999999999999999875 5688999999999999999998888787665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.4e-18  Score=118.87  Aligned_cols=134  Identities=25%  Similarity=0.353  Sum_probs=114.8

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+.  ++++.|++++|.++.+++.         .+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus        27 ~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPG---------VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCcCccCCCCC--CCCCEEEcCCCccCccCHH---------HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            5678888887653  8899999999999987543         25678899999999999998875 4688999999999


Q ss_pred             cCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          81 SNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++|.++.++. .+..+++|+.|++++|+++.+|..+..+++|+++++++|.+.+..+..+..++.++
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            9999998865 46789999999999999999999999999999999999999988777776655444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=1.2e-17  Score=115.51  Aligned_cols=109  Identities=31%  Similarity=0.457  Sum_probs=70.3

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccc-cCC-------------CCCChh-hhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-GAV-------------KNLSPD-LWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~-~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.+++.. ..+             ..+++. +..+++|++|++++|.++.
T Consensus        66 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            355666665544 566666666666666666555321 211             122333 4566777888888887777


Q ss_pred             ccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCccc
Q psy3049          65 LSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLR  109 (157)
Q Consensus        65 ~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~  109 (157)
                      +++ .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+.
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            654 46677778888888887776654 5666777788888877776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=1.2e-18  Score=136.40  Aligned_cols=130  Identities=36%  Similarity=0.611  Sum_probs=109.9

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccC
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISN   82 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~   82 (157)
                      .|.+...+..+..+..|+.|++++|.+..+|+.          +..+++|++|++++|.++.+|..++.+.+|+.|++++
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN----------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH  279 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCSCCCGG----------GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCCCCChh----------hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC
Confidence            344444455688999999999999999988765          3467899999999999999998899999999999999


Q ss_pred             CCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049          83 NKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      |.++.+|..+..+++|++|++++|.++.+|..++.+++|++|+|++|.+.+.++..+...
T Consensus       280 N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            999999999999999999999999999999989999999999999999999999998643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.6e-17  Score=111.76  Aligned_cols=136  Identities=29%  Similarity=0.479  Sum_probs=105.2

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEE
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L   78 (157)
                      +++|.++.+++. +..+++|+.|++++|.++.+++..         +..+++|++|++++|.++.++.. +..+++|++|
T Consensus        35 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV---------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            466777777655 677788888888888777665532         45678899999999999877654 5788899999


Q ss_pred             eccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHH
Q psy3049          79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL  152 (157)
Q Consensus        79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~  152 (157)
                      ++++|.++.++. .+..+++|+.+++++|.++.++.. +..+++|+++++++|++.+.       ++.++.+-.+.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~  174 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI  174 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHH
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHH
Confidence            999999988765 467889999999999999988765 78889999999999988754       34556554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=1.5e-18  Score=133.14  Aligned_cols=131  Identities=24%  Similarity=0.337  Sum_probs=110.8

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L   78 (157)
                      |++|+|+.+++ +|.++++|+.|++++|+++.++++.         |..+++|++|++++|+++.+++ .+..+++|++|
T Consensus        59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~---------f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH---------hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            57888988885 4888999999999999988887642         6678899999999999998875 57889999999


Q ss_pred             eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      ++++|.++.++. .+..+++|++|++++|.++.  +|..++.+++|+++++++|.+.+..+..+.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            999999988865 57889999999999999984  466788899999999999999887776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=1e-17  Score=111.82  Aligned_cols=134  Identities=28%  Similarity=0.442  Sum_probs=112.4

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+.  ++++.|++++|.++.+|+.          +..+++|+.|++++|.++.+++ .+..+++|+.|+
T Consensus        17 ~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~----------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           17 CSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKE----------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             CTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGG----------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHH----------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            36788999987653  6899999999999977743          5678899999999999998764 588999999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHh
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD  154 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~  154 (157)
                      +++|.++.++. .+..+++|+.|++++|.++.+|.. +..+++|+++++++|++.+.        +.++.+..|+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~--------c~l~~l~~~~~~  153 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD--------CNMQWLSDWVKS  153 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS--------GGGHHHHHHHHH
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC--------CcCHHHHHHHHh
Confidence            99999998865 688999999999999999998865 88999999999999999865        345555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=116.41  Aligned_cols=136  Identities=15%  Similarity=0.231  Sum_probs=115.2

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+.  ..++.|++++|.++.+++.-        .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus        18 ~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           18 CSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATG--------IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCC--------CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eCCCCcccCccCCC--CCCCEEEcCCCcCCccCchh--------hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            46788999987653  35689999999999875321        25678899999999999998765 688999999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +++|.++.++. .+..+++|+.|++++|+++.+ |..+..+++|+++++++|.+.+..+..+..+..++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            99999998865 588899999999999999987 45689999999999999999999888888776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.8e-18  Score=119.86  Aligned_cols=140  Identities=31%  Similarity=0.439  Sum_probs=73.8

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccc-cCCC-------------CCCh-hhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEI-GAVK-------------NLSP-DLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~-------------~~~~-~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.+++.. ..++             .++. .+..+++|++|++++|.++.
T Consensus        44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            35566666654 3666666666666666666555432 1111             1122 23445556666666666555


Q ss_pred             ccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          65 LSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        65 ~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+.
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence            432 24455556666666665555543 244555555555555555555432 45555555555555555554444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=3e-18  Score=119.88  Aligned_cols=87  Identities=34%  Similarity=0.499  Sum_probs=45.8

Q ss_pred             hcCcccceEecccCCCcccccc-ccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcE
Q psy3049          47 WQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQI  123 (157)
Q Consensus        47 ~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~  123 (157)
                      ..+++|++|++++|.++.+++. +..+++|+.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            3445555555555555544332 3455555555555555554433 234555555555555555544433 455555555


Q ss_pred             EEccCCCCCC
Q psy3049         124 LGLHGNPLSK  133 (157)
Q Consensus       124 l~l~~n~~~~  133 (157)
                      +++++|++.+
T Consensus       210 L~l~~N~~~~  219 (272)
T 3rfs_A          210 IWLHDNPWDC  219 (272)
T ss_dssp             EECCSSCBCC
T ss_pred             EEccCCCccc
Confidence            5555555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=4.7e-18  Score=119.46  Aligned_cols=100  Identities=25%  Similarity=0.292  Sum_probs=51.3

Q ss_pred             hhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCc
Q psy3049          46 LWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQ  122 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~  122 (157)
                      +..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.+ |..+.++++|+
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence            3344445555555555444432 23445555555555555554433 344455555555555555543 34455556666


Q ss_pred             EEEccCCCCCChhHHhhcCCCCh
Q psy3049         123 ILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus       123 ~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                      ++++++|.+.+..++.+..++.+
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTC
T ss_pred             EeeCCCCcCCcCCHHHcccCccc
Confidence            66666666665555555544433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.3e-17  Score=111.13  Aligned_cols=125  Identities=22%  Similarity=0.344  Sum_probs=107.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+..  +++.|++++|.++.+++..        .+..+++|++|++++|.++.+ +..+..+++|+.|+
T Consensus        15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDG--------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSC--------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcc--------ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            468899999976643  8999999999999877531        155778999999999999977 56788999999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChh
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDY  135 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~  135 (157)
                      +++|.++.++. .+..+++|++|++++|+++.+ |..+..+++|+++++++|++.+..
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            99999997754 578899999999999999966 566899999999999999999763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=3.2e-18  Score=120.91  Aligned_cols=134  Identities=28%  Similarity=0.305  Sum_probs=90.3

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccc------------cCCCCCChhhhcCcccceEecccCCCcccc-
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEI------------GAVKNLSPDLWQFTHLTALYMNDNNLTRLS-   66 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-   66 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.++...            ..+..+|..+..+++|++|++++|.++.++ 
T Consensus        38 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~  117 (290)
T 1p9a_G           38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL  117 (290)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred             cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH
Confidence            46777776654 4778888888888888887665431            012234445556667777777777777665 


Q ss_pred             ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          67 GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        67 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|+++.+|.. +..+++|+++++++|.+...
T Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence            346667777777777777776654 345667777777777777777654 45677777777777777744

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.1e-18  Score=119.04  Aligned_cols=145  Identities=28%  Similarity=0.428  Sum_probs=107.4

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCc-cccCC-------------CCCChh-hhcCcccceEecccCCCccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGAV-------------KNLSPD-LWQFTHLTALYMNDNNLTRL   65 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~~   65 (157)
                      ++++.++.+|..+.  ++++.|++++|.++.+++ .+..+             ..++.. +..+++|++|++++|.++.+
T Consensus        23 ~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~  100 (270)
T 2o6q_A           23 CSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL  100 (270)
T ss_dssp             CTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence            36788898887654  689999999999998875 33322             223433 35677788888888888776


Q ss_pred             cc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049          66 SG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        66 ~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      +. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|+++++++|.+.+..+..+..+
T Consensus       101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence            54 45677888888888888877654 467788888888888888877755 6788888888888888888777777666


Q ss_pred             CChHH
Q psy3049         143 NGTQK  147 (157)
Q Consensus       143 ~~l~~  147 (157)
                      +.++.
T Consensus       181 ~~L~~  185 (270)
T 2o6q_A          181 TELKT  185 (270)
T ss_dssp             TTCCE
T ss_pred             CCcCE
Confidence            55543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=6e-18  Score=120.74  Aligned_cols=141  Identities=21%  Similarity=0.291  Sum_probs=113.9

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhh-hcCcccceEecccCCCccccccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL-WQFTHLTALYMNDNNLTRLSGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L   78 (157)
                      +++|.++.+++ .+..+++|+.|++++|.++.++..         .+ ..+++|++|++++|.++.++.. ..+++|+.|
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L  196 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---------ELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL  196 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---------GGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---------HHhhccCcCCEEECCCCcCcccccc-cccccCCEE
Confidence            35566666654 366677777777777777654322         23 3568899999999999887543 358899999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCC-ChhHHhhcCCCChHHHHHH
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS-KDYMKIYNEPNGTQKLLSY  151 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~l~~l~~~  151 (157)
                      ++++|.++.+|..+..+++|+.+++++|+++.+|..+..+++|+++++++|++. +..+..+..++.++.+...
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            999999999988899999999999999999999998999999999999999999 7888888888888877544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=5.7e-18  Score=119.04  Aligned_cols=147  Identities=20%  Similarity=0.303  Sum_probs=110.6

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecC-ccccCC--------------CCC-ChhhhcCcccceEecccCCCc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLP-SEIGAV--------------KNL-SPDLWQFTHLTALYMNDNNLT   63 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~-~~~~~~--------------~~~-~~~~~~~~~L~~l~l~~~~~~   63 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.++ ..+..+              ..+ +..+..+++|++|++++|.++
T Consensus        39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A           39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence            467788877754 788888888888888888763 333322              222 345667788888888888888


Q ss_pred             cc-cccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          64 RL-SGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        64 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      .+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+.
T Consensus       119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence            66 3456778888888888888887765 477788888999988888877754 77888899999999988888788887


Q ss_pred             CCCChHH
Q psy3049         141 EPNGTQK  147 (157)
Q Consensus       141 ~~~~l~~  147 (157)
                      .++.++.
T Consensus       199 ~l~~L~~  205 (285)
T 1ozn_A          199 DLGRLMT  205 (285)
T ss_dssp             TCTTCCE
T ss_pred             CcccccE
Confidence            7666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.7e-17  Score=120.34  Aligned_cols=135  Identities=30%  Similarity=0.407  Sum_probs=104.4

Q ss_pred             CCCCCCCccchh-hh-cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccE
Q psy3049           1 MNDNNLTRLSGD-IS-LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~~l~~~-~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~   77 (157)
                      |++|.|+.++.. +. .+++|+.|++++|+++.+++.         .+..+++|++|++++|.++.+++ .+..+.+|+.
T Consensus        46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---------AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCCccChhhhhhcccccCEEECCCCcCCccChh---------hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            456666666654 44 677777777777777766543         36677889999999999987764 5778899999


Q ss_pred             EeccCCCCCCC-ChhhhCccccceEEcCCCcccCcchhh----cCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049          78 LDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYEL----GKLFQIQILGLHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus        78 L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~~----~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  144 (157)
                      |++++|.++.+ +..+..+++|+.|++++|+++.+|..+    ..+++|++|++++|.+.+..++.+..++.
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence            99999999876 557888899999999999999988764    56899999999999999887777665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.2e-17  Score=116.94  Aligned_cols=132  Identities=25%  Similarity=0.359  Sum_probs=97.4

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L   78 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus        35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCcccccCHhHhccccCCcEEECCCCcCCccCHH---------HccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            46777887776 477888888888888888776653         2456677888888888877664 456777788888


Q ss_pred             eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      ++.+|.++.++. .+..+++|++|++++|.++.  +|..+.++++|+++++++|.+.+..+..+..
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            888887776654 56777888888888888875  5667778888888888888887766655543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=1.4e-17  Score=108.53  Aligned_cols=109  Identities=23%  Similarity=0.251  Sum_probs=56.1

Q ss_pred             cCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC-CChhhh
Q psy3049          17 INLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSEIG   93 (157)
Q Consensus        17 ~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~   93 (157)
                      ++++.|++++|+++  .+|..          +..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~----------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL----------TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC----------CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             ccCCEEECCCCCCChhhHHHH----------HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            44555555555555  34332          22344555555555555544 344455555555555555554 344444


Q ss_pred             CccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCChhH
Q psy3049          94 DLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        94 ~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      .+++|++|++++|.++.++  ..+..+++|+++++++|.+.+..+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            4555555555555555544  335555555555555555554433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=1.2e-16  Score=111.80  Aligned_cols=136  Identities=31%  Similarity=0.435  Sum_probs=116.5

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      +++|.++.++ .+..+++|+.|++++|.++.+++..         +..+++|++|++++|.++.+++. +..+++|++|+
T Consensus        70 l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           70 LGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV---------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT---------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH---------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            5788998874 7899999999999999999877642         55778999999999999987654 68899999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +++|.++.++. .+..+++|+.|++++|+++.++.. +..+++|+++++++|.+.+..+..+..++.++
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            99999998865 467899999999999999988765 68999999999999999998887776655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=9.2e-17  Score=105.54  Aligned_cols=125  Identities=30%  Similarity=0.466  Sum_probs=106.9

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+  .++++.|++++|.++.+++..         +..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus        14 ~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A           14 CNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGV---------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             CCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHH---------hcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            3578888888654  368999999999999877642         55778999999999999988754 68899999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      +++|.++.++. .+..+++|+.+++++|.++.+|.. +..+++|+++++++|++.+..+
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999998876 467899999999999999998876 5789999999999999997754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2.4e-17  Score=129.81  Aligned_cols=74  Identities=32%  Similarity=0.470  Sum_probs=45.9

Q ss_pred             ccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          73 INLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        73 ~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      .+++.|++++|.++ .+|..+..++.|+.|++++|.++ .+|..++++++|+++|+++|.++|.+|..++.+..++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            44556666666655 45666666666666666666666 5566666666666666666666666666665555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=3e-17  Score=110.45  Aligned_cols=135  Identities=31%  Similarity=0.437  Sum_probs=114.1

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+  .++++.|++++|.++.+++..         +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        15 ~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           15 YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGV---------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             CSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCccCCCCCC--CCCCcEEEcCCCccCcCChhh---------hcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            467778887654  458999999999999877642         55788999999999999988654 578999999999


Q ss_pred             cCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          81 SNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      ++|.++.++. .+..+++|++|++++|+++.++.. +..+++|+++++++|.+.+..+..+..++.++.
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            9999998875 467899999999999999988765 789999999999999999888877877766654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=7.7e-18  Score=119.42  Aligned_cols=141  Identities=23%  Similarity=0.266  Sum_probs=79.1

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCc--cccCCCC--------------CChhhhcCcccceEecccCCCcc-
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPS--EIGAVKN--------------LSPDLWQFTHLTALYMNDNNLTR-   64 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~~~--------------~~~~~~~~~~L~~l~l~~~~~~~-   64 (157)
                      ++|.++.+|..+..+++|+.|++++|.++.++.  .+..++.              .+..+..+++|++|++++|.++. 
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            445555555555555555556655555555442  2221111              12234455666666666666653 


Q ss_pred             -ccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          65 -LSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        65 -~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                       .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.++. .+..+++|+++++++|.+.+..+..+..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence             345556666666666666666654 4455566666666666666665543 3556666666666666666655554444


Q ss_pred             C
Q psy3049         142 P  142 (157)
Q Consensus       142 ~  142 (157)
                      +
T Consensus       246 ~  246 (306)
T 2z66_A          246 F  246 (306)
T ss_dssp             C
T ss_pred             h
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.6e-17  Score=111.09  Aligned_cols=130  Identities=19%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l   80 (157)
                      ++|.|+.+| .+..+++|+.|++++|.++.++           .+..+++|++|++++|.++. .+..+..+++|++|++
T Consensus        52 ~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           52 ANINVTDLT-GIEYAHNIKDLTINNIHATNYN-----------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             ESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-----------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCCccChH-HHhcCCCCCEEEccCCCCCcch-----------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            467777776 5777788888888887665443           35567788888888888875 4566778888888888


Q ss_pred             cCCCCCC-CChhhhCccccceEEcCCCc-ccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          81 SNNKLRY-LPSEIGDLIYLRELCLNNNN-LRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~l~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++|.++. .+..+..+++|++|++++|. ++.++ .+.++++|+++++++|.+.+..  .+..++.++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~  184 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLN  184 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCC
Confidence            8888874 46677788888888888887 77776 5778888888888888887643  455555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=6.9e-18  Score=120.30  Aligned_cols=136  Identities=24%  Similarity=0.287  Sum_probs=68.1

Q ss_pred             CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC---------------CCChhhhcCcccceEecccCCCcc
Q psy3049           2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK---------------NLSPDLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~---------------~~~~~~~~~~~L~~l~l~~~~~~~   64 (157)
                      ++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+.               .+|..+..+. |+++++++|.++.
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            344444 34444555555555555555554 3444333221               1133333333 4444555444442


Q ss_pred             -ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049          65 -LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus        65 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                       .+..+..+++|+.|++++|.++..+..+..+++|++|++++|.++ .+|..+..+++|+++++++|.+.+.+|..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence             233344555555555555555543333445556666666666665 55555666666666666666666555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=9.2e-18  Score=119.65  Aligned_cols=143  Identities=24%  Similarity=0.348  Sum_probs=80.2

Q ss_pred             CCCCCC---ccchhhhcccCCCEEEecC-Ccce-ecCccccCCC--------------CCChhhhcCcccceEecccCCC
Q psy3049           2 NDNNLT---RLSGDISLLINLRTLDISN-NKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNL   62 (157)
Q Consensus         2 ~~n~i~---~l~~~~~~l~~L~~L~l~~-~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~   62 (157)
                      ++|.++   .+|+.+..+++|+.|++++ |.+. .+|+.++.++              .+|..+..+++|++|++++|.+
T Consensus        58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A           58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence            455665   4666677777777777773 6665 4554443222              1244455566666666666666


Q ss_pred             c-cccccccccccccEEeccCCCCC-CCChhhhCcc-ccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049          63 T-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLI-YLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus        63 ~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                      + .+|..+..+++|++|++++|.++ .+|..+..++ .|+.+++++|.++ .+|..+..+. |+++++++|.+.+..+..
T Consensus       138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~  216 (313)
T 1ogq_A          138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred             CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence            5 34555556666666666666665 4555555555 5666666666555 4444444443 555555555555444544


Q ss_pred             hcCCCCh
Q psy3049         139 YNEPNGT  145 (157)
Q Consensus       139 ~~~~~~l  145 (157)
                      +..++.+
T Consensus       217 ~~~l~~L  223 (313)
T 1ogq_A          217 FGSDKNT  223 (313)
T ss_dssp             CCTTSCC
T ss_pred             HhcCCCC
Confidence            4444333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=7.6e-17  Score=114.69  Aligned_cols=86  Identities=26%  Similarity=0.359  Sum_probs=43.4

Q ss_pred             hcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEc
Q psy3049          47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGL  126 (157)
Q Consensus        47 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l  126 (157)
                      ..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+++++
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  202 (308)
T 1h6u_A          126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHL  202 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEc
Confidence            334444444444444444332 3444555555555555544433 4455555555555555555443 455555555555


Q ss_pred             cCCCCCChh
Q psy3049         127 HGNPLSKDY  135 (157)
Q Consensus       127 ~~n~~~~~~  135 (157)
                      ++|.+.+..
T Consensus       203 ~~N~l~~~~  211 (308)
T 1h6u_A          203 KNNQISDVS  211 (308)
T ss_dssp             TTSCCCBCG
T ss_pred             cCCccCccc
Confidence            555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=8.3e-17  Score=121.05  Aligned_cols=140  Identities=21%  Similarity=0.291  Sum_probs=110.5

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L   78 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.+++         ..+. .+++|++|++++|.++.++. ...+++|+.|
T Consensus       127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  196 (487)
T 3oja_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL  196 (487)
T ss_dssp             CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG---------GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred             CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh---------HHHhhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence            34566665543 36666666666666666665322         2333 57889999999999987754 3458899999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCC-ChhHHhhcCCCChHHHHH
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS-KDYMKIYNEPNGTQKLLS  150 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~l~~l~~  150 (157)
                      ++++|.++.+|..+..+++|+.+++++|.++.+|..+..+++|+.+++++|++. +.++..+..++.++.+..
T Consensus       197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            999999999988898999999999999999999999999999999999999998 677788877777776644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=6.6e-17  Score=112.68  Aligned_cols=126  Identities=30%  Similarity=0.443  Sum_probs=72.7

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      ++|.|+.++ .+..+++|+.|++++|+++++++           +..+++|++|++++|.++.++....  .+|+.|+++
T Consensus        49 ~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-----------l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~  114 (263)
T 1xeu_A           49 DNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-----------LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD  114 (263)
T ss_dssp             TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred             cCCCcccch-HHhhCCCCCEEECCCCccCCChh-----------hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence            344444443 34444455555555554444332           3455666666666666665543222  566666666


Q ss_pred             CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049          82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                      +|.++.++ .+..+++|+.|++++|+++.++ .+..+++|+++++++|.+.+.  ..+..++.+
T Consensus       115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L  174 (263)
T 1xeu_A          115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV  174 (263)
T ss_dssp             SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred             CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence            66666553 3566677777777777777664 466667777777777777665  344444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=8.1e-18  Score=121.57  Aligned_cols=133  Identities=20%  Similarity=0.270  Sum_probs=65.4

Q ss_pred             CCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           2 NDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      ++|.|+.++. .+..+++|+.|++++|.++++++.         .+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus        60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEED---------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             CCCcCcccCHHHhccCCCCCEEECCCCccCccCHh---------hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            4455555554 355555555555555555544321         233444555555555555544433 44455555555


Q ss_pred             ccCCCCCCCCh--hhhCccccceEEcCCC-cccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049          80 ISNNKLRYLPS--EIGDLIYLRELCLNNN-NLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPN  143 (157)
Q Consensus        80 l~~~~~~~~~~--~~~~~~~l~~l~l~~n-~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  143 (157)
                      +++|.++.+|.  .+..+++|+++++++| .++.++ ..+..+++|+++++++|.+.+..+..++.++
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  198 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ  198 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence            55555554443  3444555555555554 244332 2344555555555555555544444444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=3.4e-17  Score=125.65  Aligned_cols=134  Identities=21%  Similarity=0.315  Sum_probs=112.3

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEecc
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDIS   81 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~   81 (157)
                      +..++.||..+.  ..++.|++++|.|+++++.         .|.++++|++|++++|.++.+++ .+..+++|++|+++
T Consensus        40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~---------~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY---------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcCccCCCCC--cCCCEEEeeCCCCCCCCHH---------HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence            345777876543  3789999999999998864         36788899999999999998865 57899999999999


Q ss_pred             CCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh-hHHhhcCCCChHH
Q psy3049          82 NNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD-YMKIYNEPNGTQK  147 (157)
Q Consensus        82 ~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~l~~  147 (157)
                      +|+++.+|. .+..+++|++|++++|+++.++.. ++++++|+++++++|.+.+. .+..++.+..++.
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  177 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  177 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence            999998875 578999999999999999998864 89999999999999998764 5666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=5.6e-17  Score=120.40  Aligned_cols=144  Identities=22%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCCC--------------CCCh-hhhcCcccceEecccCCCc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAVK--------------NLSP-DLWQFTHLTALYMNDNNLT   63 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~~--------------~~~~-~~~~~~~L~~l~l~~~~~~   63 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.+++. +..++              .++. .+..+++|++|++++|.++
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            345566655543 55666666666666666655541 11111              1122 3555667777777777776


Q ss_pred             cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          64 RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        64 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      .+| .+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ ..+.++++|+++++++|.+++..++.+..
T Consensus       199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            665 355666777777777777655 446666777777777777777554 33666777777777777777666666554


Q ss_pred             CCCh
Q psy3049         142 PNGT  145 (157)
Q Consensus       142 ~~~l  145 (157)
                      +..+
T Consensus       278 l~~L  281 (440)
T 3zyj_A          278 LHHL  281 (440)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            4433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=3.1e-17  Score=125.84  Aligned_cols=131  Identities=24%  Similarity=0.310  Sum_probs=97.3

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L   78 (157)
                      +++|.++.+++ .+.++++|+.|++++|.++.+++.         .+..+++|++|++++|.++.+ |..++.+++|++|
T Consensus        39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~---------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---------AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH---------HhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            45666666665 466777777777777777665442         355677888888888888876 5667788888888


Q ss_pred             eccCCCCCCCC-hhhhCccccceEEcCCCccc--CcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          79 DISNNKLRYLP-SEIGDLIYLRELCLNNNNLR--TLPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        79 ~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      ++++|.++.++ ..+..+++|++|++++|.++  .+|..++++++|+++++++|.+.+..+..++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence            88888887665 56778888888888888887  4677788888888888888888877666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=5.4e-17  Score=120.85  Aligned_cols=144  Identities=19%  Similarity=0.349  Sum_probs=79.0

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCc-cccCC-------------CCCChh-hhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGAV-------------KNLSPD-LWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.+++ .+..+             ..++.. +..+++|++|++++|.++.
T Consensus        82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            46778887754 47888888888888888887653 22221             122322 4556777777777777765


Q ss_pred             ccc-cccccccccEEeccCC-CCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          65 LSG-DISLLINLRTLDISNN-KLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        65 ~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      ++. .+..+++|+.|+++++ .++.++. .+..+++|++|++++|+++.+|. +..+++|++|++++|.+.+..+..|..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred             eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC
Confidence            543 3444444555555442 3333332 34445555555555555554432 344455555555555555544444444


Q ss_pred             CCCh
Q psy3049         142 PNGT  145 (157)
Q Consensus       142 ~~~l  145 (157)
                      +..+
T Consensus       241 l~~L  244 (452)
T 3zyi_A          241 LSSL  244 (452)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            4333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.8e-16  Score=111.94  Aligned_cols=139  Identities=24%  Similarity=0.338  Sum_probs=92.5

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.++.++ .+..+++|+.|++++|+++.+++ +..++.+            .+.+..+++|++|++++|.++.+ +.
T Consensus        53 l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~  129 (291)
T 1h6t_A           53 ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NG  129 (291)
T ss_dssp             CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GG
T ss_pred             ccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hh
Confidence            3566666664 36667777777777777776554 3322211            12355667777888888877765 34


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. +..+++|+++++++|.+.+..  .+..++.++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~  203 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLD  203 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCS
T ss_pred             hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--hhccCCCCC
Confidence            66677788888888877766 456677788888888888877665 777788888888888777642  254444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.2e-17  Score=132.75  Aligned_cols=140  Identities=21%  Similarity=0.323  Sum_probs=93.8

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCccee------------------cCcccc--CCC--------------CCChhhhc
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRY------------------LPSEIG--AVK--------------NLSPDLWQ   48 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~------------------~~~~~~--~~~--------------~~~~~~~~   48 (157)
                      .|.++.+|+.++++++|+.|++++|.++.                  +|+.++  .+.              .+|..+..
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            46677788889999999999999999987                  777654  332              23566666


Q ss_pred             CcccceEecccCC-Ccc--ccccccccc-------cccEEeccCCCCCCCCh--hhhCccccceEEcCCCcccCcchhhc
Q psy3049          49 FTHLTALYMNDNN-LTR--LSGDISLLI-------NLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPYELG  116 (157)
Q Consensus        49 ~~~L~~l~l~~~~-~~~--~~~~~~~~~-------~L~~L~l~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~~~~  116 (157)
                      +++|+.|++++|. ++.  +|..++.+.       +|+.|++++|.++.+|.  .+..+++|+.|++++|.++.+| .++
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~  592 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG  592 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence            7777777777776 653  555444444       67777777776666666  6666677777777777666666 566


Q ss_pred             CcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049         117 KLFQIQILGLHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus       117 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~  144 (157)
                      .+++|+.|++++|.+. .+|..+..+..
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred             CCCcceEEECcCCccc-cchHHHhhccc
Confidence            6666666666666666 44444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.7e-16  Score=112.83  Aligned_cols=121  Identities=21%  Similarity=0.349  Sum_probs=86.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +++|.++.+++ +..+++|+.|++++|.++.++.           +..+++|++|++++|.++.++. +..+++|+.|++
T Consensus        70 L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           70 LKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-----------IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             CCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-----------GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred             ccCCcCCCChh-HccCCCCCEEEccCCcCCCchh-----------hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence            46777777776 7778888888888887776532           4456677777777777776653 666777777777


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      ++|.++.++. +..+++|+.|++++|.++.++. +..+++|+++++++|.+.+..+
T Consensus       137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          137 DLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence            7777776654 6667777777777777776655 6677777777777777776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=9.3e-17  Score=105.48  Aligned_cols=119  Identities=22%  Similarity=0.349  Sum_probs=67.8

Q ss_pred             CCCCCCccchhhhccc-CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEe
Q psy3049           2 NDNNLTRLSGDISLLI-NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~   79 (157)
                      ++|.|+.++. +..+. +|+.|++++|.++.+ +.          +..+++|++|++++|.++.+++.+ ..+++|++|+
T Consensus        27 ~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~----------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           27 RGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DG----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CC----------CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             eCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cc----------cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            4555555533 33333 666666666666554 11          334555666666666666555433 5566666666


Q ss_pred             ccCCCCCCCCh--hhhCccccceEEcCCCcccCcchh----hcCcCCCcEEEccCCCCC
Q psy3049          80 ISNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPYE----LGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        80 l~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~~----~~~~~~L~~l~l~~n~~~  132 (157)
                      +++|.++.+|.  .+..+++|+.+++++|.++.+|..    +..+++|++++++.|...
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666665554  455566666666666666655543    556666666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=6.6e-17  Score=120.01  Aligned_cols=144  Identities=23%  Similarity=0.368  Sum_probs=81.1

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCcc-ccCC-------------CCCCh-hhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSE-IGAV-------------KNLSP-DLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~-~~~~-------------~~~~~-~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.++. .+..+++|+.|++++|.++.+++. +..+             ..++. .+..+++|++|++++|.++.
T Consensus        71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            46777777664 477788888888888888766532 2211             12232 35566777777777777765


Q ss_pred             ccc-cccccccccEEeccCC-CCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          65 LSG-DISLLINLRTLDISNN-KLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        65 ~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      ++. .+..+++|+.|++.+| .++.++. .+..+++|++|++++|.++.+|. +..+++|++|++++|.+.+..+..|..
T Consensus       151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence            543 3444555555555542 3333332 34455555555555555555543 445555555555555555555555544


Q ss_pred             CCCh
Q psy3049         142 PNGT  145 (157)
Q Consensus       142 ~~~l  145 (157)
                      +..+
T Consensus       230 l~~L  233 (440)
T 3zyj_A          230 LMHL  233 (440)
T ss_dssp             CTTC
T ss_pred             CccC
Confidence            4433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=5.3e-17  Score=103.81  Aligned_cols=121  Identities=20%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             cccCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC-CChh
Q psy3049          15 LLINLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSE   91 (157)
Q Consensus        15 ~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~   91 (157)
                      ..++++.|++++|.++  .+|..          +..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~   83 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL----------TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL   83 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC----------CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHH----------HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence            4578999999999998  66654          34677899999999999877 677889999999999999987 6777


Q ss_pred             hhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCChhH---HhhcCCCChH
Q psy3049          92 IGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKDYM---KIYNEPNGTQ  146 (157)
Q Consensus        92 ~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~l~  146 (157)
                      +..+++|+++++++|.++.++  ..+..+++|+++++++|.+.+..+   ..++.++.++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            777899999999999999875  668999999999999999887765   5666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=3.1e-17  Score=104.88  Aligned_cols=117  Identities=24%  Similarity=0.249  Sum_probs=101.8

Q ss_pred             CCCCCCC--ccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccE
Q psy3049           1 MNDNNLT--RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~   77 (157)
                      +++|.++  .+|+.+..+++|+.|++++|.++.+ +.          +..+++|+++++++|.++. +|..+..+++|++
T Consensus        24 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~----------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN----------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT----------CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh----------hhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            5788898  8888889999999999999999876 22          4567899999999999997 6666777999999


Q ss_pred             EeccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEccC
Q psy3049          78 LDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHG  128 (157)
Q Consensus        78 L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~~  128 (157)
                      |++++|.++.++  ..+..+++|+++++++|.++.++.    .+..+++|+++++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999865  678899999999999999998875    588999999998863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=4.2e-16  Score=115.77  Aligned_cols=127  Identities=28%  Similarity=0.426  Sum_probs=105.0

Q ss_pred             CCCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049           1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L   78 (157)
                      +++|.++.++ ..+..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.+ +..+..+++|+.|
T Consensus       282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN---------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             ecCccccccchhhcccCCCCCEEECCCCcccccChh---------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            3566777554 4478888888888888888876542         356778999999999999876 4567889999999


Q ss_pred             eccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049          79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      ++++|.++.+ |..+..+++|++|++++|+++.+|.. +..+++|+++++++|++.+..+
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999876 66888999999999999999988865 6899999999999999997643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.3e-17  Score=114.51  Aligned_cols=140  Identities=17%  Similarity=0.175  Sum_probs=65.5

Q ss_pred             CCCCCCccch-hhhcccCCCEEEecCCc-ceecCcc-ccCC--------------CCCC-hhhhcCcccceEecccCCCc
Q psy3049           2 NDNNLTRLSG-DISLLINLRTLDISNNK-LRYLPSE-IGAV--------------KNLS-PDLWQFTHLTALYMNDNNLT   63 (157)
Q Consensus         2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~-l~~~~~~-~~~~--------------~~~~-~~~~~~~~L~~l~l~~~~~~   63 (157)
                      ++|.|+.+++ .+..+++|+.|++++|+ ++.+++. +..+              ..++ ..+..+++|+++++++|.++
T Consensus        39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred             eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence            4566666655 36666666666666665 6555542 2111              1111 12334455555555555554


Q ss_pred             ccccccccccccc---EEeccCC-CCCCCCh-hhhCccccc-eEEcCCCcccCcchhhcCcCCCcEEEccCCC-CCChhH
Q psy3049          64 RLSGDISLLINLR---TLDISNN-KLRYLPS-EIGDLIYLR-ELCLNNNNLRTLPYELGKLFQIQILGLHGNP-LSKDYM  136 (157)
Q Consensus        64 ~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~~~~l~-~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~-~~~~~~  136 (157)
                      .+|. +..+.+++   .+++++| .++.++. .+..+++|+ .+++++|+++.+|......++|+++++++|+ +.+..+
T Consensus       119 ~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          119 MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred             cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence            4443 33344444   4444444 4444432 244444555 5555555555444432222445555555552 444444


Q ss_pred             HhhcCC
Q psy3049         137 KIYNEP  142 (157)
Q Consensus       137 ~~~~~~  142 (157)
                      ..|..+
T Consensus       198 ~~~~~l  203 (239)
T 2xwt_C          198 DAFGGV  203 (239)
T ss_dssp             TTTTTC
T ss_pred             HHhhcc
Confidence            444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=9.7e-17  Score=104.52  Aligned_cols=123  Identities=24%  Similarity=0.252  Sum_probs=108.0

Q ss_pred             CCCCCCC--ccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccE
Q psy3049           1 MNDNNLT--RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~   77 (157)
                      +++|.++  .+|..+..+++|+.|++++|.++.+ +.          +..+++|++|++++|.++. ++..+..+++|+.
T Consensus        31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN----------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS----------CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh----------hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            5788998  8888889999999999999999876 32          4567899999999999997 5666667999999


Q ss_pred             EeccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEccCCCCCCh
Q psy3049          78 LDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        78 L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      |++++|.++.++  ..+..+++|+++++++|.++.+|.    .+..+++|++++++.|.+...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            999999999876  678899999999999999998876    688999999999999987644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=121.78  Aligned_cols=131  Identities=25%  Similarity=0.367  Sum_probs=97.8

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L   78 (157)
                      +++|.++.+++ ++..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus        35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCccCccChhHhhCCCCceEEECCCCcCCccCcc---------cccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            46778887765 478888888888888888877653         2556777888888888877664 456777888888


Q ss_pred             eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      ++.+|.++.++. .+..+++|++|++++|.++.  +|..++++++|+++++++|.+.+..+..++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence            888887777654 57777888888888887774  567777888888888888887776665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=7.9e-17  Score=119.97  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=83.8

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCC--------------CCCCh-hhhcCcccceEecccCCCc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAV--------------KNLSP-DLWQFTHLTALYMNDNNLT   63 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~--------------~~~~~-~~~~~~~L~~l~l~~~~~~   63 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.+++. +..+              ..++. .+..+++|++|++++|.++
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            345666665544 55666666666666666655542 1111              11122 2455666777777777776


Q ss_pred             cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          64 RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        64 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      .++ .+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..++.+..
T Consensus       210 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            654 355666677777777776655 445666666777777776666553 34666666777777776666665555544


Q ss_pred             CC
Q psy3049         142 PN  143 (157)
Q Consensus       142 ~~  143 (157)
                      ++
T Consensus       289 l~  290 (452)
T 3zyi_A          289 LR  290 (452)
T ss_dssp             CT
T ss_pred             cc
Confidence            33

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=6.9e-18  Score=130.50  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCccee
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRY   31 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~   31 (157)
                      .|.++.+|.+++++++|+.|++++|.++.
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~  220 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVA  220 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCG
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCcccc
Confidence            56777888889999999999999999887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=4.4e-16  Score=109.95  Aligned_cols=136  Identities=21%  Similarity=0.323  Sum_probs=95.8

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCccccccc
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      .+.++.+. .+..+++++.|++++|.+..++. +..+             ..+++ +..+++|++|++++|.++.++ .+
T Consensus        33 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l  108 (291)
T 1h6t_A           33 KKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SL  108 (291)
T ss_dssp             CSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GG
T ss_pred             CCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hh
Confidence            34444432 35678999999999999988754 3222             12233 666777788888888777654 36


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ..+++|++|++++|.++.+ ..+..+++|+.|++++|.++.+ ..+..+++|+++++++|.+.+..+  +..++.++
T Consensus       109 ~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence            6777888888888877766 3466778888888888888877 457788888888888888887655  55555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=6.4e-17  Score=114.69  Aligned_cols=100  Identities=22%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             hhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCC--CChhhhCccccceEEcCCCcccCc-chhhcCcCCC
Q psy3049          46 LWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRY--LPSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQI  121 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L  121 (157)
                      +..+++|++|++++|.++.. +..+..+++|+.|++++|.++.  +|..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            33444455555555544432 2234444555555555555442  344455555566666666665544 3345556666


Q ss_pred             cEEEccCCCCCChhHHhhcCCCCh
Q psy3049         122 QILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus       122 ~~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                      +++++++|.+.+..+..+..++.+
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             CEEECCCCccCccChhhccCcccC
Confidence            666666666655555445444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=119.04  Aligned_cols=134  Identities=22%  Similarity=0.272  Sum_probs=74.4

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L   78 (157)
                      +++|.|+.+++ .+..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG---------AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------hhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            46677776653 477777777888877777765332         23445555566665555555543 24455555555


Q ss_pred             eccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049          79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPN  143 (157)
Q Consensus        79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  143 (157)
                      ++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..+..+..++
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  176 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH  176 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence            5555555533 334455555555555555555432 2345555555555555555555444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=115.63  Aligned_cols=135  Identities=27%  Similarity=0.348  Sum_probs=115.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+.  ++++.|++++|++++++..         .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus        39 ~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           39 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS---------DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CSTTCSSCCTTCC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCccccccccc--ccCcEEECCCCcCcccCHH---------HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            5788899987654  5899999999999988763         2567889999999999999775 46888999999999


Q ss_pred             cCCCCCCCChh-hhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCC-CCCChhHHhhcCCCChHH
Q psy3049          81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGN-PLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~l~~  147 (157)
                      ++|.++.++.. +..+++|++|++++|.++.+|.  .+.++++|+++++++| .+.+..+..+..++.++.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            99999999875 8889999999999999999987  5889999999999999 577777777877666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=1e-16  Score=112.08  Aligned_cols=146  Identities=25%  Similarity=0.349  Sum_probs=89.2

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCc-cccCCCC-------------CCh-hhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGAVKN-------------LSP-DLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~-------------~~~-~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.++.+++ .+..+++|+.|++++|.++.++. .+..+..             ++. .+..+++|++|++++|.++.
T Consensus        59 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            46777777765 47778888888888888776653 2332211             121 35556677777777777764


Q ss_pred             --ccccccccccccEEeccCCCCCCCCh-hhhC---------------------------ccccceEEcCCCcccCcchh
Q psy3049          65 --LSGDISLLINLRTLDISNNKLRYLPS-EIGD---------------------------LIYLRELCLNNNNLRTLPYE  114 (157)
Q Consensus        65 --~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~---------------------------~~~l~~l~l~~n~l~~l~~~  114 (157)
                        +|..+..+++|+.|++++|.++.++. .+..                           ..+|+.+++++|.++.+|..
T Consensus       139 ~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred             ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh
Confidence              45566667777777777776664432 2222                           22566666666766666544


Q ss_pred             -hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHH
Q psy3049         115 -LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLL  153 (157)
Q Consensus       115 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~  153 (157)
                       +..+++|+++++++|++.+.       ++.+..+..|..
T Consensus       219 ~~~~l~~L~~L~l~~N~~~c~-------c~~l~~l~~~~~  251 (276)
T 2z62_A          219 IFDRLTSLQKIWLHTNPWDCS-------CPRIDYLSRWLN  251 (276)
T ss_dssp             TTTTCCSCCEEECCSSCBCCC-------TTTTHHHHHHHH
T ss_pred             HhcccccccEEEccCCccccc-------CCchHHHHHHHH
Confidence             46677777777777777643       334555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=2.7e-17  Score=112.87  Aligned_cols=126  Identities=21%  Similarity=0.376  Sum_probs=69.0

Q ss_pred             CCCccchhhhcccCCCEEEecCCcceecCcc-ccCC--------------CCCCh-hhhcCcccceEeccc-CCCccccc
Q psy3049           5 NLTRLSGDISLLINLRTLDISNNKLRYLPSE-IGAV--------------KNLSP-DLWQFTHLTALYMND-NNLTRLSG   67 (157)
Q Consensus         5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~--------------~~~~~-~~~~~~~L~~l~l~~-~~~~~~~~   67 (157)
                      .++.+|. +.  .+++.|++++|+++.+++. +..+              ..+++ .+..+++|+++++++ |.++.+++
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            3667776 33  3899999999999998873 2211              11222 233445555555554 55554432


Q ss_pred             -cccccccccEEeccCCCCCCCChhhhCccccc---eEEcCCC-cccCcchh-hcCcCCCc-EEEccCCCCCCh
Q psy3049          68 -DISLLINLRTLDISNNKLRYLPSEIGDLIYLR---ELCLNNN-NLRTLPYE-LGKLFQIQ-ILGLHGNPLSKD  134 (157)
Q Consensus        68 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~---~l~l~~n-~l~~l~~~-~~~~~~L~-~l~l~~n~~~~~  134 (157)
                       .+..+++|++|++++|.++.+|. +..+++++   .+++++| .++.++.. +..+++|+ ++++++|.+...
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence             34445555555555555554444 44444444   5555555 55555433 55555555 666655555533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=2.1e-16  Score=124.53  Aligned_cols=141  Identities=28%  Similarity=0.397  Sum_probs=91.2

Q ss_pred             CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-c
Q psy3049           2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT-R   64 (157)
Q Consensus         2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~-~   64 (157)
                      ++|.++ .+|..+..+++|+.|++++|.++ .+|..++.++              .+|..+..+++|+++++++|.++ .
T Consensus       402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  481 (768)
T 3rgz_A          402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE  481 (768)
T ss_dssp             CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence            455565 45566777777888888877776 3444443222              23455566666777777777666 3


Q ss_pred             ccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049          65 LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      +|..+..+++|+.|++++|.++ .+|..+..+++|+++++++|.++ .+|..+.++++|+++++++|.+.|.+|..+...
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            4555666677777777777665 45666666777777777777766 566666777777777777777776666665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=4.6e-16  Score=111.36  Aligned_cols=137  Identities=20%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             CCCCCCcc-chhhhcccCCCEEEecCCcceecCcccc-----------CCCCCCh-hhhcCcccceEecccCCCcc---c
Q psy3049           2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIG-----------AVKNLSP-DLWQFTHLTALYMNDNNLTR---L   65 (157)
Q Consensus         2 ~~n~i~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----------~~~~~~~-~~~~~~~L~~l~l~~~~~~~---~   65 (157)
                      ++|.++.+ |..+..+++|+.|++++|.++++|..+.           .+..++. .+..+++|+++++++|.++.   .
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  163 (330)
T 1xku_A           84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE  163 (330)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred             CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence            44555544 3335555555555555555555444321           0111122 23445555555555555542   1


Q ss_pred             cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +..+..+++|+.|++++|.++.+|..+.  ++|+.+++++|.++.+ +..+..+++|+++++++|.+.+..+..+.
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            2334445555555555554444433221  3344444444444433 22344444444444444444444333333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=4.7e-16  Score=103.86  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=99.5

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCccee-cCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccEEe
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~   79 (157)
                      ++|.++.++ .+..+++|+.|++++|.++. .++.          +..+++|++|++++|.++. .+..+..+++|++|+
T Consensus        74 ~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           74 NNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN----------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             ESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC----------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             cCCCCCcch-hhhcCCCCCEEEeECCccCcccChh----------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            567777664 68899999999999999985 3433          4567899999999999985 566788999999999


Q ss_pred             ccCCC-CCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          80 ISNNK-LRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        80 l~~~~-~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      +++|. ++.++ .+..+++|+.+++++|.++.++ .+.++++|+++++++|++.+
T Consensus       143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99997 88886 6888999999999999999887 68899999999999999865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.8e-16  Score=124.23  Aligned_cols=36  Identities=25%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             CCCCCCCccchhhhcccC-CCEEEecCCcceecCccc
Q psy3049           1 MNDNNLTRLSGDISLLIN-LRTLDISNNKLRYLPSEI   36 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~   36 (157)
                      +++|.++.+|..+..+++ |+.|++++|.++.+|..+
T Consensus       602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~  638 (876)
T 4ecn_A          602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF  638 (876)
T ss_dssp             CCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred             CcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence            356666666666666666 777777777666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=2.6e-16  Score=120.70  Aligned_cols=136  Identities=20%  Similarity=0.334  Sum_probs=117.8

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+.  ++++.|++++|.++.+++.         .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus        19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSY---------SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcccCCCCCC--CCcCEEECCCCCcCEeChh---------hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            5678889997664  7899999999999988763         3667889999999999999874 56889999999999


Q ss_pred             cCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCC-hhHHhhcCCCChHHH
Q psy3049          81 SNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK-DYMKIYNEPNGTQKL  148 (157)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~l~~l  148 (157)
                      ++|.++.+ |..+..+++|++|++++|.++.++ ..++++++|+++++++|.+.+ .+|..++.++.++++
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            99999877 778999999999999999999887 569999999999999999986 568888887776644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=3.3e-16  Score=109.11  Aligned_cols=128  Identities=24%  Similarity=0.327  Sum_probs=108.9

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      ++|.++.++ .+..+++|+.|++++|+++.++ .          +..+++|+.|++++|.++.+++ +..+++|+.|+++
T Consensus        27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~----------l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           27 GKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-G----------MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             TCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-T----------GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             cCCCccccc-chhhcCcCcEEECcCCCcccch-H----------HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            568888887 6889999999999999999776 2          4567899999999999998876 8899999999999


Q ss_pred             CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      +|.++.++....  ++|+.|++++|+++.++ .+.++++|+++++++|.+.+..  .+..++.++.
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~  154 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEV  154 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCE
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCE
Confidence            999998876433  89999999999999886 4889999999999999999863  4655555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=2.9e-16  Score=113.92  Aligned_cols=128  Identities=28%  Similarity=0.340  Sum_probs=109.7

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccc-cccccccccEE
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSG-DISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L   78 (157)
                      ++++.++.+|..+.  ..++.|++++|.++.+++..         +. .+++|++|++++|.++.+++ .+..+++|++|
T Consensus        25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~---------~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           25 CSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW---------TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             CCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS---------SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             eCCCCcCccCccCC--CCCCEEECCCCCCCccChhh---------hhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            35788888887653  45899999999999887653         44 67899999999999998764 58899999999


Q ss_pred             eccCCCCCCCCh-hhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049          79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus        79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      ++++|.++.++. .+..+++|+.|++++|+++.++ ..+..+++|++|++++|.+.+..+..+
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            999999998765 6788999999999999999874 568999999999999999998877776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=4.8e-16  Score=119.25  Aligned_cols=137  Identities=16%  Similarity=0.173  Sum_probs=90.9

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L   78 (157)
                      +++|.|+.+++ .+..+++|+.|++++|++..+++.         .+..+++|++|++++|.++.+ +..++.+++|++|
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED---------TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChh---------hccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            56788887754 588888888888888888866432         244566677777777776654 4456666777777


Q ss_pred             eccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++++|.++.+ +..+..+++|++|++++|.++.++ ..+..+++|+++++++|.+.+..+..++.+..++
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            7777776655 345666677777777777776542 2233466777777777777766666666555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=115.25  Aligned_cols=133  Identities=26%  Similarity=0.343  Sum_probs=91.0

Q ss_pred             CCCCCCCc-cchhhhcccCCCEEEecCCcceecC---ccccCCC-------------C-CChh-hhcCcccceEecccCC
Q psy3049           1 MNDNNLTR-LSGDISLLINLRTLDISNNKLRYLP---SEIGAVK-------------N-LSPD-LWQFTHLTALYMNDNN   61 (157)
Q Consensus         1 l~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~---~~~~~~~-------------~-~~~~-~~~~~~L~~l~l~~~~   61 (157)
                      +++|.++. +|..+..+++|+.|++++|+++.++   ..++.++             . +|.. +..+++|+.+++++|.
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            45666665 4555677777777777777776432   2221111             0 1221 3345667777777776


Q ss_pred             Ccc-ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChh
Q psy3049          62 LTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDY  135 (157)
Q Consensus        62 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~  135 (157)
                      ++. .+..+.  ++|+.|++++|.++.+|..+..+++|+++++++|+++.+|.. +.++++|+++++++|++.+..
T Consensus       411 l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          411 LTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            653 232222  678888888888888888777888999999999999988876 788899999999999988763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=9.7e-17  Score=105.40  Aligned_cols=123  Identities=24%  Similarity=0.304  Sum_probs=101.6

Q ss_pred             hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcC-cccceEecccCCCccccccccccccccEEeccCCCCCCCCh
Q psy3049          12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS   90 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   90 (157)
                      .+.++.+++.|++++|+++.++.           +..+ ++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-----------~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-----------LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-----------GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-----------hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCc
Confidence            35678899999999999997743           2233 4899999999999987 678889999999999999998875


Q ss_pred             h-hhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCChhHH---hhcCCCChH
Q psy3049          91 E-IGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKDYMK---IYNEPNGTQ  146 (157)
Q Consensus        91 ~-~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~l~  146 (157)
                      . +..+++|+++++++|.++.+|.  .+.++++|+++++++|++.+....   .+..++.++
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence            4 4889999999999999999987  688999999999999998755333   355555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=6.6e-17  Score=122.67  Aligned_cols=134  Identities=19%  Similarity=0.305  Sum_probs=80.8

Q ss_pred             CCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      ++|.|+.++ .++..+++|++|++++|+++.+++         ..+..+++|++|++++|.++.+++. ++.+++|++|+
T Consensus        34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEG---------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             cCCccCccChhhhhcCCcccEEECCCCCcCccCh---------hhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            344444443 234555555555555555554432         2345566677777777777665543 66677777777


Q ss_pred             ccCCCCCC--CChhhhCccccceEEcCCCc-ccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049          80 ISNNKLRY--LPSEIGDLIYLRELCLNNNN-LRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus        80 l~~~~~~~--~~~~~~~~~~l~~l~l~~n~-l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  144 (157)
                      +++|.++.  .|..+..+++|++|++++|. +..+| ..+.++++|+++++++|.+.+..+..++.+..
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            77777663  34556666777777777776 44555 34667777777777777777666666655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.66  E-value=2.2e-16  Score=122.19  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             CcccceEecccCCCccccccccc--------cccccEEeccCCCCCCCChhhh--CccccceEEcCCCcccCcchhhcCc
Q psy3049          49 FTHLTALYMNDNNLTRLSGDISL--------LINLRTLDISNNKLRYLPSEIG--DLIYLRELCLNNNNLRTLPYELGKL  118 (157)
Q Consensus        49 ~~~L~~l~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~n~l~~l~~~~~~~  118 (157)
                      +++|++|++++|.++.+|.....        +++|+.|++++|.++.+|..+.  .+++|+.|++++|+++.+|..+.++
T Consensus       456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l  535 (636)
T 4eco_A          456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS  535 (636)
T ss_dssp             TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred             CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcC
Confidence            45566666666655544433221        1155566666665555555554  5555666666666655555555555


Q ss_pred             CCCcEEEc------cCCCCCChhHHhhcCCCChH
Q psy3049         119 FQIQILGL------HGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       119 ~~L~~l~l------~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++|+++++      ++|.+.+.+|..+..++.++
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~  569 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT  569 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred             CCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence            56666655      33445555555555444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.66  E-value=5.9e-16  Score=113.15  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=98.7

Q ss_pred             CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049           2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~   79 (157)
                      ++|.++.+|+. +..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus        53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY---------AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCchhhCChhHhcccccCcEEECCCCcccccChh---------hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45677778766 67888888888888888877653         25567788888888888887654 467888888888


Q ss_pred             ccCCCCCCCChh-hhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049          80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus        80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      +++|.++.+|.. +..+++|++|++++|.++.++. .+..+++|+++++++|.+.+.....+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  185 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI  185 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccc
Confidence            888888888765 4678888888888888887654 47788888888888888876644333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=2.1e-16  Score=118.22  Aligned_cols=134  Identities=27%  Similarity=0.433  Sum_probs=81.8

Q ss_pred             CCCCCCCcc-chhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049           1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL   78 (157)
Q Consensus         1 l~~n~i~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L   78 (157)
                      +++|.|+.+ |..+.++++|+.|++++|.++.+|...         +..+++|++|++++|.++.+ +..+..+++|+.|
T Consensus        63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---------STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---------ccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            567888877 456899999999999999999887642         33455566666666665543 2344555566666


Q ss_pred             eccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049          79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPN  143 (157)
Q Consensus        79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  143 (157)
                      ++.+|.++.+ +..+..+++|+.|++++|.++.++.. +.++++|+.+++++|.+.+..+..+..+.
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~  200 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY  200 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence            6666655543 23455555566666666655555432 55555555555555555554444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.65  E-value=2.1e-18  Score=115.42  Aligned_cols=121  Identities=26%  Similarity=0.369  Sum_probs=105.1

Q ss_pred             CCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCC
Q psy3049           5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNK   84 (157)
Q Consensus         5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (157)
                      .++.+|..+..+++|+.|++++|+++.+| .          +..+++|++|++++|.++.+|..+..+++|+.|++++|.
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~----------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-S----------LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-C----------HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-c----------cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            45566668999999999999999998876 3          567789999999999999888777778999999999999


Q ss_pred             CCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCChhHH
Q psy3049          85 LRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        85 ~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~~~~  137 (157)
                      ++.+| .+..+++|+++++++|.++.++.  .+..+++|+++++++|++.+.++.
T Consensus       105 l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          105 IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            98876 57788999999999999998775  588999999999999998877554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.6e-15  Score=116.71  Aligned_cols=139  Identities=24%  Similarity=0.346  Sum_probs=88.9

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.|+.++ .+..+++|+.|++++|+++.+++ +..++.+            ++.+..+++|+.|++++|.++.++ .
T Consensus        50 l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~  126 (605)
T 1m9s_A           50 ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-G  126 (605)
T ss_dssp             CTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-G
T ss_pred             CcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-c
Confidence            3556666664 46667777777777777766554 2221111            124556677777777777776653 4


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|+.|+|++|.+.+.  ..+..++.|+
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~  200 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLD  200 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred             ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCC
Confidence            56677777777777777766 456677777777777777776655 67777777777777777764  2344444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=7.4e-16  Score=118.38  Aligned_cols=32  Identities=16%  Similarity=0.025  Sum_probs=16.8

Q ss_pred             hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049         115 LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       115 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+++|++|++++|.+.+..+..++.++.++
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  281 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  281 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence            34445555555555555555555555444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=5.9e-16  Score=116.85  Aligned_cols=120  Identities=28%  Similarity=0.384  Sum_probs=90.1

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+.  ++++.|++++|.++.+++.         .+..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus         7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            7 RSKNGLIHVPKDLS--QKTTILNISQNYISELWTS---------DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD   75 (520)
T ss_dssp             CTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHH---------HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred             cCCCCccccccccc--ccccEEECCCCcccccChh---------hccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence            46788888887665  7888888888888876542         355677788888888887765 45677777888888


Q ss_pred             ccCCCCCCCChhhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCC
Q psy3049          80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        80 l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      +++|.++.+|..  .+++|++|++++|.++.  +|..++++++|+++++++|.+.+
T Consensus        76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            888877777655  67778888888888775  45667788888888888877765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.5e-15  Score=116.08  Aligned_cols=107  Identities=29%  Similarity=0.357  Sum_probs=94.7

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccc
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY   97 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   97 (157)
                      .|+.|++++|.++.+|.           +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .+..+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPR  509 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-----------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSS
T ss_pred             CceEEEecCCCCCCCcC-----------ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCC
Confidence            58899999999987764           44677899999999999998888999999999999999999888 7888999


Q ss_pred             cceEEcCCCcccCc--chhhcCcCCCcEEEccCCCCCChhH
Q psy3049          98 LRELCLNNNNLRTL--PYELGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        98 l~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      |+.|++++|.++.+  |..++.+++|+.+++++|++++.++
T Consensus       510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            99999999999987  7889999999999999999887644

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=1.3e-16  Score=113.57  Aligned_cols=86  Identities=26%  Similarity=0.342  Sum_probs=47.0

Q ss_pred             hcCcccceEecccCCCccccc----cccccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchhhcCcCC
Q psy3049          47 WQFTHLTALYMNDNNLTRLSG----DISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGKLFQ  120 (157)
Q Consensus        47 ~~~~~L~~l~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~  120 (157)
                      ..+++|++|++++|.++.++.    .+..+++|+.|++++|.++..+  ..+..+++|+.|++++|.++.+|..+.  ++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            344555555555555553221    1234456666666666665432  233345566666666666666665544  56


Q ss_pred             CcEEEccCCCCCCh
Q psy3049         121 IQILGLHGNPLSKD  134 (157)
Q Consensus       121 L~~l~l~~n~~~~~  134 (157)
                      |+++++++|.+.+.
T Consensus       276 L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN  289 (312)
T ss_dssp             EEEEECCSSCCCSC
T ss_pred             ceEEECCCCCCCCC
Confidence            66666666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=3.3e-15  Score=107.45  Aligned_cols=140  Identities=22%  Similarity=0.369  Sum_probs=77.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      ++|.++.+++ +..+++|+.|++++|.+..++. +..++.+            ...+..+++|+.+++++|.++.++. +
T Consensus       163 ~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~  239 (347)
T 4fmz_A          163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-L  239 (347)
T ss_dssp             CSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             cCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-h
Confidence            4555555544 5666666666666666665543 2111110            0114455666666666666665544 5


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ..+++|+.|++++|.++.+ ..+..+++|+.+++++|.++.++ .+..+++|+++++++|.+.+..++.++.++.++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            5566666666666665554 23455566666666666665553 345556666666666666655555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.4e-15  Score=116.83  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=101.1

Q ss_pred             CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049           2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~   79 (157)
                      ++|.++.+|+. +..+++|+.|++++|.++.+++.         .+..+++|++|++++|.++.+++ .++.+++|++|+
T Consensus        59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY---------AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH---------HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56677778876 67888899999998888877653         25567788889998888887754 467888889999


Q ss_pred             ccCCCCCCCChh-hhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049          80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus        80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      +++|.++.+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|.+.+.....+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  191 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI  191 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhh
Confidence            988888888765 5788888899998888886654 57888888999988888887654443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=1.9e-15  Score=115.45  Aligned_cols=129  Identities=28%  Similarity=0.340  Sum_probs=96.3

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC----------CCCChhhhcCcccceEecccCCCcccccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQFTHLTALYMNDNNLTRLSGDIS   70 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~   70 (157)
                      +++|.|+.+|. +..  +|+.|++++|.++.+|.....+          ..+|.   .+++|+.|++++|.++.+|. +.
T Consensus       107 Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~  179 (571)
T 3cvr_A          107 ACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP  179 (571)
T ss_dssp             CCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC
T ss_pred             ccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh
Confidence            35566666665 433  6666666666666665522111          12232   34678999999999988877 54


Q ss_pred             ccccccEEeccCCCCCCCChhhhCcccc-------ceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          71 LLINLRTLDISNNKLRYLPSEIGDLIYL-------RELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                        ++|+.|++++|.++.+|. +..  +|       +.|++++|.++.+|..+..+++|+++++++|++++..|..+..
T Consensus       180 --~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          180 --ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             --TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              889999999999998887 543  77       9999999999999998888999999999999999999988764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=3.4e-15  Score=106.84  Aligned_cols=89  Identities=31%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             ccceEecccCCCccc-cccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccC
Q psy3049          51 HLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHG  128 (157)
Q Consensus        51 ~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~  128 (157)
                      +|+.+++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.+|..+..+++|+++++++
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC
Confidence            444455555544433 2334444555555555555544332 34444555555555555555555455555555555555


Q ss_pred             CCCCChhHHhh
Q psy3049         129 NPLSKDYMKIY  139 (157)
Q Consensus       129 n~~~~~~~~~~  139 (157)
                      |.+++..+..|
T Consensus       273 N~i~~~~~~~f  283 (330)
T 1xku_A          273 NNISAIGSNDF  283 (330)
T ss_dssp             SCCCCCCTTSS
T ss_pred             CcCCccChhhc
Confidence            55554444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=1.9e-15  Score=110.39  Aligned_cols=125  Identities=25%  Similarity=0.287  Sum_probs=92.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS   81 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~   81 (157)
                      ++|.++.+ +.+..+++|+.|++++|.++.+++         ..+..+++|+.|++++|.++.++..+..+++|+.|+++
T Consensus       234 ~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          234 QHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY---------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             CSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES---------GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred             CCCCCccc-HHHcCCCCccEEECCCCcCCCcCh---------hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence            44555544 245666667777777766665432         23556778888888888888777666778888888888


Q ss_pred             CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049          82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                      +|.++.+|..+..+++|+.|++++|.++.++  +..+++|+++++++|++.+.....
T Consensus       304 ~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~  358 (390)
T 3o6n_A          304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRA  358 (390)
T ss_dssp             SSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             CCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHH
Confidence            8888888877777888888888888888775  567788888888888887654443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=3.4e-15  Score=115.98  Aligned_cols=142  Identities=27%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-cc-------------CCCCCCh-hhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IG-------------AVKNLSP-DLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~-------------~~~~~~~-~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.+++. ++             .+..+|+ .+..+++|++|++++|.++.
T Consensus        32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  111 (680)
T 1ziw_A           32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK  111 (680)
T ss_dssp             CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence            456667766654 67777777777777777655432 11             1111222 23444445555555554444


Q ss_pred             cc-ccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-h--cCcCCCcEEEccCCCCCChhHHhh
Q psy3049          65 LS-GDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-L--GKLFQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus        65 ~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~--~~~~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      ++ ..++.+++|++|++++|.++.. +..+..+++|+++++++|.++.++.. +  ..+++|+++++++|.+.+..+..+
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF  191 (680)
T ss_dssp             CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred             cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence            33 2344444555555555544433 22344445555555555555444322 2  133455555555555555544444


Q ss_pred             cCC
Q psy3049         140 NEP  142 (157)
Q Consensus       140 ~~~  142 (157)
                      ..+
T Consensus       192 ~~l  194 (680)
T 1ziw_A          192 HAI  194 (680)
T ss_dssp             GGS
T ss_pred             hhh
Confidence            443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=2.4e-15  Score=115.65  Aligned_cols=138  Identities=20%  Similarity=0.319  Sum_probs=99.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC-------------CCChhhhcCcccceEecccCCCcccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK-------------NLSPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +.+.++.+. .+..+.+|+.|++++|.+..++. +..++             .+++ +..+++|+.|++++|.++.++ .
T Consensus        29 ~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~  104 (605)
T 1m9s_A           29 KKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-S  104 (605)
T ss_dssp             TCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-T
T ss_pred             cCCCccccc-chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-h
Confidence            445566553 35788999999999999988763 33221             1222 666777778888887777654 5


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+..+  +..++.|+.
T Consensus       105 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            667778888888888877653 466778888888888888877 557788888888888888887766  655555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=1.2e-15  Score=109.38  Aligned_cols=147  Identities=24%  Similarity=0.373  Sum_probs=103.2

Q ss_pred             CCCCCCCc---cchhhhcccCCCEEEecCCcceecCcccc-CC----------CCC-ChhhhcCcccceEecccCCCccc
Q psy3049           1 MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIG-AV----------KNL-SPDLWQFTHLTALYMNDNNLTRL   65 (157)
Q Consensus         1 l~~n~i~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~----------~~~-~~~~~~~~~L~~l~l~~~~~~~~   65 (157)
                      +++|.++.   .+..+..+ +|+.|++++|.++.+|..+. .+          ..+ +..+..+++|+.|++++|.++.+
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            35666652   23345555 77777777777776665432 11          112 23466778888888888888876


Q ss_pred             cc-cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcC------cCCCcEEEccCCCCC--Chh
Q psy3049          66 SG-DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGK------LFQIQILGLHGNPLS--KDY  135 (157)
Q Consensus        66 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~------~~~L~~l~l~~n~~~--~~~  135 (157)
                      ++ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|.++.++.. +..      .+.++.+++.+|++.  +..
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~  312 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ  312 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred             ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence            54 57788888899998888888888888888889999998888877643 332      356888888888887  566


Q ss_pred             HHhhcCCCChHHH
Q psy3049         136 MKIYNEPNGTQKL  148 (157)
Q Consensus       136 ~~~~~~~~~l~~l  148 (157)
                      +..|..++.++.+
T Consensus       313 ~~~~~~l~~L~~l  325 (332)
T 2ft3_A          313 PATFRCVTDRLAI  325 (332)
T ss_dssp             GGGGTTBCCSTTE
T ss_pred             cccccccchhhhh
Confidence            6777766666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=2.8e-15  Score=107.43  Aligned_cols=139  Identities=25%  Similarity=0.397  Sum_probs=107.8

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCccee---cCccccC------------CCCCChhhhcCcccceEecccCCCcc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRY---LPSEIGA------------VKNLSPDLWQFTHLTALYMNDNNLTR   64 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~---~~~~~~~------------~~~~~~~~~~~~~L~~l~l~~~~~~~   64 (157)
                      +++|.|+.+++. +..+++|+.|++++|.++.   .+..+..            +..+|..+.  ++|+.|++++|.++.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA  207 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence            456777777654 7778888888888887753   2222221            122333322  578888999998887


Q ss_pred             cc-ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          65 LS-GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        65 ~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      ++ ..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+++.+|..+..+++|+++++++|.+.+..+..|..
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            65 567888999999999999987754 788899999999999999999998999999999999999999888777764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=8.7e-15  Score=95.65  Aligned_cols=105  Identities=33%  Similarity=0.505  Sum_probs=91.8

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCCCChh-hhCc
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDL   95 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~   95 (157)
                      ..+.++++++.++++|+.+            .+.+++|++++|.++.+ +..+..+.+|++|++++|.++.++.. +..+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l   77 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL   77 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence            4678999999999988754            15789999999999987 45688899999999999999988764 6789


Q ss_pred             cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ++|++|++++|+++.++.. +..+++|+++++++|++.+.
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999999998865 88999999999999999866

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=9e-16  Score=119.18  Aligned_cols=137  Identities=23%  Similarity=0.289  Sum_probs=96.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCcc-ccCCCC-------------C-ChhhhcCcccceEecccCCCcccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE-IGAVKN-------------L-SPDLWQFTHLTALYMNDNNLTRLS   66 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~-------------~-~~~~~~~~~L~~l~l~~~~~~~~~   66 (157)
                      +++.++.+|..+.  ++++.|++++|.++.+++. ++.++.             + |..+..+++|++|++++|.++.++
T Consensus        12 s~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           12 SHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             CSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred             CCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence            5778899997764  7899999999999987763 332211             1 344566777777777777777666


Q ss_pred             c-cccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          67 G-DISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        67 ~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      + .+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++ ..+.++++|+++++++|.+.+..+..+.
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  166 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD  166 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred             hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence            4 3667777777777777776664 45667777777777777777543 4466777777777777777776666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=9.1e-16  Score=116.40  Aligned_cols=135  Identities=24%  Similarity=0.323  Sum_probs=112.8

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI   80 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l   80 (157)
                      +++.++.+|..+.  ++++.|++++|.++++++.         .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus        13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A           13 RSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHG---------DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             TTSCCSSCCSCCC--TTCCEEECCSSCCCEECSS---------TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCccccccccCC--CCccEEECcCCccCccChh---------hhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            5688999998764  7899999999999987543         2567889999999999999775 56889999999999


Q ss_pred             cCCCCCCCChh-hhCccccceEEcCCCcccCc--chhhcCcCCCcEEEccCCCC-CChhHHhhcCCCChHH
Q psy3049          81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--PYELGKLFQIQILGLHGNPL-SKDYMKIYNEPNGTQK  147 (157)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~~l~~  147 (157)
                      ++|.++.++.. +..+++|++|++++|.++.+  |..++++++|+++++++|.+ .+..+..+..++.+++
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            99999988764 89999999999999999954  56789999999999999984 4444467776666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=3.2e-15  Score=113.96  Aligned_cols=120  Identities=27%  Similarity=0.417  Sum_probs=83.2

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+.  ++++.|++++|.++.+++.         .+..+++|++|++++|.++.+ +..+..+++|++|+
T Consensus        38 ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           38 YSNRNLTHVPKDLP--PRTKALSLSQNSISELRMP---------DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGG---------GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCCccCCCCCC--CCcCEEECCCCCccccChh---------hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            35677777776553  6777888888877766542         245666777777777777765 34566777777777


Q ss_pred             ccCCCCCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCC
Q psy3049          80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        80 l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      +++|.++.+|..  .+++|++|++++|.++.++  ..++++++|+++++++|.+.+
T Consensus       107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            777777766655  5677777777777777543  557777777777777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=8.9e-16  Score=102.20  Aligned_cols=117  Identities=27%  Similarity=0.394  Sum_probs=101.3

Q ss_pred             CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc--ccccccccEEeccCCCCCCC-ChhhhCc
Q psy3049          19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYL-PSEIGDL   95 (157)
Q Consensus        19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~   95 (157)
                      -+.+++++++++++|..+.            ..++.|++++|.++.+++.  +..+++|++|++++|.++.+ |..+..+
T Consensus        10 ~~~l~~s~~~l~~ip~~~~------------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCEEEcCCCCcCcCccCCC------------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence            3789999999999887542            2689999999999988753  78999999999999999977 6788999


Q ss_pred             cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      ++|++|++++|+++.++.. +.++++|+++++++|.+.+..+..+..++.++.
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            9999999999999987754 889999999999999999998888877665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=1e-14  Score=95.69  Aligned_cols=104  Identities=30%  Similarity=0.487  Sum_probs=91.2

Q ss_pred             CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCCCChh-hhCcc
Q psy3049          19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLI   96 (157)
Q Consensus        19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~   96 (157)
                      -+.+++++++++.+|..+.            +.++.|++++|.++.+ +..+..+++|+.|++++|.++.+|.. +..++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcEEEeCCCCCCccCCCcC------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence            4788999999998887541            5799999999999987 45678899999999999999998765 57899


Q ss_pred             ccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          97 YLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +|+.|++++|+++.+|.. +..+++|+++++++|++.+.
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999999999999998875 88999999999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=4.3e-15  Score=113.31  Aligned_cols=134  Identities=23%  Similarity=0.304  Sum_probs=93.1

Q ss_pred             CCCCCCCc-cchhhhcccCCCEEEecCCcceecCc---cccCCC-------------C-CChh-hhcCcccceEecccCC
Q psy3049           1 MNDNNLTR-LSGDISLLINLRTLDISNNKLRYLPS---EIGAVK-------------N-LSPD-LWQFTHLTALYMNDNN   61 (157)
Q Consensus         1 l~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~-------------~-~~~~-~~~~~~L~~l~l~~~~   61 (157)
                      +++|.++. +|..+..+++|+.|++++|+++.++.   .+..++             . +|.. +..+++|+.+++++|.
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            45677775 45567778888888888887776542   222111             1 2221 3345666677777776


Q ss_pred             Ccc-ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049          62 LTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM  136 (157)
Q Consensus        62 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~  136 (157)
                      ++. .+..+.  ++|+.|++++|.++.+|..+..+++|+.+++++|+++.+|.. +..+++|+++++++|++.+..+
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            653 222221  578888888888888888777888899999999999988877 7888899999999998887644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=9.1e-16  Score=115.39  Aligned_cols=95  Identities=16%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             cCcccceEecccCCCccc-ccccc-ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049          48 QFTHLTALYMNDNNLTRL-SGDIS-LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG  125 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~  125 (157)
                      .+++|++|++++|.++.. +..+. .+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|+.++
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  220 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS  220 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence            344455555555555432 22222 445555555555555544321 235666667777777776666666777777777


Q ss_pred             ccCCCCCChhHHhhcCCCC
Q psy3049         126 LHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus       126 l~~n~~~~~~~~~~~~~~~  144 (157)
                      +++|.+.+ +|..+..++.
T Consensus       221 Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          221 LRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             CTTSCCCE-ECTTCCCCTT
T ss_pred             ecCCcCcc-cchhhccCCC
Confidence            77777765 3444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=5.2e-15  Score=106.41  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=99.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCcccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      ++|.++.+++ +..+++|+.+++++|.+..++. +..+             ..++. +..+++|+++++++|.++.+ +.
T Consensus       185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~  260 (347)
T 4fmz_A          185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NA  260 (347)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG
T ss_pred             cCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hh
Confidence            4555665544 5555555555555555554332 1111             11122 56778899999999998876 45


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+++|+.|++++|.++.++ .+..+++|+.+++++|.++..+ ..+..+++|+++++++|++.+..+  +..++.++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            778889999999999998774 5778899999999999998554 558899999999999999998776  55555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=4.8e-16  Score=118.27  Aligned_cols=90  Identities=29%  Similarity=0.381  Sum_probs=60.9

Q ss_pred             hhhcCcccceEecccCCCc--cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcch-hhcCcCC
Q psy3049          45 DLWQFTHLTALYMNDNNLT--RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQ  120 (157)
Q Consensus        45 ~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~  120 (157)
                      .+..+++|+.|++++|.++  .+|..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|+++.++. .+.++++
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  519 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS  519 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence            3455666677777777665  3455566677777777777777655 5566677777777777777776654 3667777


Q ss_pred             CcEEEccCCCCCCh
Q psy3049         121 IQILGLHGNPLSKD  134 (157)
Q Consensus       121 L~~l~l~~n~~~~~  134 (157)
                      |+++++++|++.+.
T Consensus       520 L~~L~l~~N~~~~~  533 (570)
T 2z63_A          520 LQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECCSSCBCCC
T ss_pred             CcEEEecCCcccCC
Confidence            77777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=100.07  Aligned_cols=117  Identities=28%  Similarity=0.439  Sum_probs=102.4

Q ss_pred             CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCCh-hhhCccc
Q psy3049          19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGDLIY   97 (157)
Q Consensus        19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~   97 (157)
                      -+.+++++++++++|+.+.            +.++.|++++|.++.+|..+..+++|+.|++++|.++.++. .+..+++
T Consensus        12 ~~~l~~~~~~l~~ip~~~~------------~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP------------RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC------------TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEcCCCCCCcCCCCCC------------CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            3678999999999887542            46999999999999998889999999999999999998864 6889999


Q ss_pred             cceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          98 LRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        98 l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      |+.|++++|.++.++. .+..+++|++|++++|.+.+..+..|..++.++.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            9999999999998875 5889999999999999999888888877766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=3.4e-16  Score=111.29  Aligned_cols=85  Identities=22%  Similarity=0.333  Sum_probs=57.0

Q ss_pred             cCcccceEecccCCCcccccc----ccccccccEEeccCCCCCCC-ChhhhCc---cccceEEcCCCcccCcchhhcCcC
Q psy3049          48 QFTHLTALYMNDNNLTRLSGD----ISLLINLRTLDISNNKLRYL-PSEIGDL---IYLRELCLNNNNLRTLPYELGKLF  119 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~---~~l~~l~l~~n~l~~l~~~~~~~~  119 (157)
                      .+++|++|++++|.++.++..    +..+++|++|++++|.++.. |..+..+   ++|++|++++|+++.+|..+.  +
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~  272 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A  272 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence            456677777777777654432    34567777777777777655 5555444   577777777777777776553  6


Q ss_pred             CCcEEEccCCCCCCh
Q psy3049         120 QIQILGLHGNPLSKD  134 (157)
Q Consensus       120 ~L~~l~l~~n~~~~~  134 (157)
                      +|+++++++|.+.+.
T Consensus       273 ~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          273 KLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCSCEECCSCCCCSC
T ss_pred             CCCEEECCCCcCCCC
Confidence            777777777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=1.5e-16  Score=124.73  Aligned_cols=127  Identities=24%  Similarity=0.261  Sum_probs=102.8

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      |++|.|..+|..+..+++|+.|++++|.++.+|+.          +..+++|++|++++|.++.+|..++.+.+|++|++
T Consensus       231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE----------IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG----------GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred             CCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh----------hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence            57899999999888999999999999999987765          55778999999999999999989999999999999


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCc-chhhcCcC-CCcEEEccCCCCCChhHH
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLF-QIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~-~L~~l~l~~n~~~~~~~~  137 (157)
                      ++|.++.+|..+..+++|+.|++++|.++.. |..+.... ....+++++|.+.+.+|.
T Consensus       301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            9999999998899999999999999999954 44443321 111234444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=2.9e-15  Score=111.29  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=98.9

Q ss_pred             CCCCCCCccc-hhhhcccCCCEEEecCCcce-ecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccE
Q psy3049           1 MNDNNLTRLS-GDISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRT   77 (157)
Q Consensus         1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~   77 (157)
                      +++|.|+.++ ..+..+++|+.|++++|.+. .+++.         .+..+++|++|++++|.++.+ +..+..+++|++
T Consensus        37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN---------TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---------TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             ecCCccCcCChhHhccCccccEEECcCCcccceECcc---------cccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            4566666653 34666677777777766664 34332         356778899999999998866 567888899999


Q ss_pred             EeccCCCCCC-CChh--hhCccccceEEcCCCcccCc-chh-hcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          78 LDISNNKLRY-LPSE--IGDLIYLRELCLNNNNLRTL-PYE-LGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        78 L~l~~~~~~~-~~~~--~~~~~~l~~l~l~~n~l~~l-~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      |++++|.++. .+..  +..+++|++|++++|.++.+ |.. +.++++|+++++++|.+.+..+..+..
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  176 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN  176 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence            9999998875 3333  77888999999999999876 444 788999999999999988877766654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=2.7e-15  Score=115.10  Aligned_cols=145  Identities=22%  Similarity=0.278  Sum_probs=89.8

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCC--------------ChhhhcCcccceEecccCCCc-c
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNL--------------SPDLWQFTHLTALYMNDNNLT-R   64 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~L~~l~l~~~~~~-~   64 (157)
                      +++|.++.+++. +..+++|+.|++++|.++++|+.+..++.+              |..+..+++|+++++++|.+. .
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            467788888766 888999999999999998888765433221              223445566666666666554 3


Q ss_pred             ccc-cccccccccEEeccCCCCCCC---ChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHH-h
Q psy3049          65 LSG-DISLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMK-I  138 (157)
Q Consensus        65 ~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~-~  138 (157)
                      ++. .+..+++|+.|++++|.++..   +..+..+++|+.+++++|.+..+ |..+..+++|+++++++|.+.+..+. .
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            332 255566666666666666543   44556666666666666666644 34466666666666666666554433 2


Q ss_pred             hcCCCCh
Q psy3049         139 YNEPNGT  145 (157)
Q Consensus       139 ~~~~~~l  145 (157)
                      +..++.+
T Consensus       421 ~~~l~~L  427 (606)
T 3t6q_A          421 FQNLHLL  427 (606)
T ss_dssp             TTTCTTC
T ss_pred             hhCcccC
Confidence            4444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=6e-15  Score=112.78  Aligned_cols=114  Identities=26%  Similarity=0.278  Sum_probs=78.2

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +++|.|+.+|. ++.+++|+.|++++|.++.+|+.          +..+++|+.|++++|.++.+| .++.+++|+.|++
T Consensus       448 Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~----------~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          448 LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA----------LAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             CTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG----------GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             ecCCCCCCCcC-ccccccCcEeecCcccccccchh----------hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            46677777765 77777777777777777766543          445667777777777777765 6667777777777


Q ss_pred             cCCCCCCC--ChhhhCccccceEEcCCCcccCcchh----hcCcCCCcEEEc
Q psy3049          81 SNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE----LGKLFQIQILGL  126 (157)
Q Consensus        81 ~~~~~~~~--~~~~~~~~~l~~l~l~~n~l~~l~~~----~~~~~~L~~l~l  126 (157)
                      ++|.++.+  |..+..+++|+.|++++|.++.+|..    +..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77777766  66777777777777777777755443    234667776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=3.1e-15  Score=106.48  Aligned_cols=131  Identities=24%  Similarity=0.277  Sum_probs=102.2

Q ss_pred             CCCCCCCccc-hhhhcccCCCEEEecCCccee---cCccc--c---CCCC-------C------Chh-hhcCcccceEec
Q psy3049           1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRY---LPSEI--G---AVKN-------L------SPD-LWQFTHLTALYM   57 (157)
Q Consensus         1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~---~~~~~--~---~~~~-------~------~~~-~~~~~~L~~l~l   57 (157)
                      +++|.|+.++ ..++.+++|+.|++++|++..   +++.+  +   .++.       +      +.. +..+++|++|++
T Consensus       156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL  235 (312)
T ss_dssp             EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred             eeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence            3678888877 458889999999999988643   22222  2   2211       1      112 235689999999


Q ss_pred             ccCCCcccc--ccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          58 NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        58 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ++|.++..+  ..+..+++|+.|++++|.++.+|..+.  ++|+.|++++|+++.+|. +..+++|+++++++|++++.
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence            999998754  345668899999999999999988765  899999999999999877 88999999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=2.1e-14  Score=110.72  Aligned_cols=115  Identities=31%  Similarity=0.381  Sum_probs=89.5

Q ss_pred             cCCCEEEecCCcceecCccccCCCC----------CChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCC
Q psy3049          17 INLRTLDISNNKLRYLPSEIGAVKN----------LSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLR   86 (157)
Q Consensus        17 ~~L~~L~l~~~~l~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   86 (157)
                      ++|+.|++++|.++.+|.....+..          +|.   .+++|+.|++++|.++.+|   ..+++|+.|++++|.++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC
Confidence            5666777777777666554333221          121   1356888888888888776   34578999999999998


Q ss_pred             CCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          87 YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        87 ~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      .+|.   .+++|+.|++++|.++.+|..+.++++|+.+++++|++.+..+..+.
T Consensus       255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            8877   56889999999999999999899999999999999999998888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=1.6e-15  Score=108.15  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=90.3

Q ss_pred             ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccc-cccccccEEeccCCCCCCCChhhh
Q psy3049          16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDI-SLLINLRTLDISNNKLRYLPSEIG   93 (157)
Q Consensus        16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~   93 (157)
                      +++|+.|++++|+++.+++.         .+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.++.++... 
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-  188 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDL---------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-  188 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGB---------CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred             cCCCCEEECCCCCCCCccch---------hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-
Confidence            44555555555555544332         3556788999999999998754 334 46789999999999998775433 


Q ss_pred             CccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          94 DLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        94 ~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      .+++|+.|++++|+++.+|..+..+++|+++++++|.+.+ ++..+..++.++
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~  240 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE  240 (317)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred             ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCC
Confidence            4789999999999999998889999999999999999985 455566555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.58  E-value=1.8e-14  Score=107.60  Aligned_cols=137  Identities=30%  Similarity=0.413  Sum_probs=86.8

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC-------------CCChhhhcCcccceEecccCCCccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK-------------NLSPDLWQFTHLTALYMNDNNLTRLSG   67 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~L~~l~l~~~~~~~~~~   67 (157)
                      +++|.++.++ .+..+++|+.|++++|.++.+++ +..+.             .++. +..+++|+.|++++|.++.+++
T Consensus       228 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          228 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh
Confidence            3566666653 46667777777777777665543 22111             1121 4556677777777777766544


Q ss_pred             cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049          68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus        68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                       +..+++|+.|++++|.++..+. +..+++|+.+++++|.++.++ .+.++++|+++++++|.+.+..|  +..++.+
T Consensus       305 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  377 (466)
T 1o6v_A          305 -ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRI  377 (466)
T ss_dssp             -GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             -hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence             5667777777777777765544 556677777777777777663 46677777777777777776665  4444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=2.5e-14  Score=106.88  Aligned_cols=128  Identities=27%  Similarity=0.393  Sum_probs=60.5

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      ++|.++.++ .+..+++|+.|++++|.+..+++ ++.+..+            .+.+..+++|+.+++++|.++..++ +
T Consensus       185 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~  261 (466)
T 1o6v_A          185 SSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-L  261 (466)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred             cCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-h
Confidence            455555553 25556666666666665554432 1111000            0123444555555555555554433 4


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      ..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|+++++++|.+.+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred             hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence            445555555555555544433 4444455555555555444433 34444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=1.5e-14  Score=110.58  Aligned_cols=129  Identities=26%  Similarity=0.318  Sum_probs=75.6

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCcccc-----------CCCCCChhhhcCcccceEecccCCCccccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG-----------AVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      +++|.|+.+|   ..+++|+.|++++|.++.+|. +.           .+..+|.   .+++|++|++++|.++.+|.  
T Consensus        87 Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--  157 (571)
T 3cvr_A           87 ITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--  157 (571)
T ss_dssp             CCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred             CcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--
Confidence            3455555555   335566666666666666555 32           1122333   34556666666666665554  


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCC-------cEEEccCCCCCChhHHhhcCC
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI-------QILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~  142 (157)
                       .+++|+.|++++|.++.+|. +.  ++|+.|++++|.++.+|. +..  +|       +.+++++|.++.. |..+..+
T Consensus       158 -~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l  229 (571)
T 3cvr_A          158 -LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSL  229 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC-CGGGGGS
T ss_pred             -cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcC
Confidence             35567777777777776666 43  677777777777777776 443  56       7788888877754 4434335


Q ss_pred             CChH
Q psy3049         143 NGTQ  146 (157)
Q Consensus       143 ~~l~  146 (157)
                      +.++
T Consensus       230 ~~L~  233 (571)
T 3cvr_A          230 DPTC  233 (571)
T ss_dssp             CTTE
T ss_pred             CCCC
Confidence            4443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=4.9e-15  Score=117.84  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             hhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCC-CChh--hhCccccceEEcCCCcccCcc--hhhcC
Q psy3049          44 PDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRY-LPSE--IGDLIYLRELCLNNNNLRTLP--YELGK  117 (157)
Q Consensus        44 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~l~~l~l~~n~l~~l~--~~~~~  117 (157)
                      ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++. .+..  +..+++|++|++++|.++.++  ..+++
T Consensus        67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            3467788899999999988866 5678888899999999988874 4443  778889999999999888653  45888


Q ss_pred             cCCCcEEEccCCCCCChhHHhhc
Q psy3049         118 LFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus       118 ~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +++|++|++++|.+.+..++.+.
T Consensus       147 L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             CSSCCEEEEESSCCCCCCSGGGH
T ss_pred             CCCCCEEECCCCcCCeeCHHHcc
Confidence            89999999999888876666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.55  E-value=2.5e-14  Score=106.83  Aligned_cols=94  Identities=29%  Similarity=0.349  Sum_probs=51.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +++|.|+.+| ++..+++|+.|++++|.++.++  +          ..+++|++|++++|.++.++  ++.+++|++|++
T Consensus        49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~----------~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           49 CHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L----------SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             CCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C----------TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             ccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c----------ccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence            4566777665 5677777777777777776653  2          23344555555555554432  344445555555


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCc
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTL  111 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l  111 (157)
                      ++|.++.++  +..+++|+++++++|.++.+
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCcccee
Confidence            555544443  34444455555555544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=5e-14  Score=92.37  Aligned_cols=102  Identities=25%  Similarity=0.361  Sum_probs=87.9

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+.  ++++.|++++|+++.+++.         .+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus        19 ~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           19 CQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG---------VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH---------HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            46889999998764  8999999999999987653         256788999999999999998765 57899999999


Q ss_pred             ccCCCCCCCChh-hhCccccceEEcCCCcccCcch
Q psy3049          80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY  113 (157)
Q Consensus        80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~  113 (157)
                      +++|.++.+|.. +..+++|+++++++|.+.-.+.
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999999988774 8889999999999999985543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=9.6e-15  Score=103.79  Aligned_cols=131  Identities=24%  Similarity=0.263  Sum_probs=102.9

Q ss_pred             CCCCCCCccch-hhhcccCCCEEEecCCccee---cCc-----cccCCCCC----------Chh----hhcCcccceEec
Q psy3049           1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRY---LPS-----EIGAVKNL----------SPD----LWQFTHLTALYM   57 (157)
Q Consensus         1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~---~~~-----~~~~~~~~----------~~~----~~~~~~L~~l~l   57 (157)
                      +++|.|+.+++ .+..+++|+.|++++|++..   ++.     .+..++.+          +..    +..+++|++|++
T Consensus       152 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred             eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence            46788988775 48899999999999998753   221     12222221          221    356789999999


Q ss_pred             ccCCCccc-ccccccc---ccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          58 NDNNLTRL-SGDISLL---INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        58 ~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      ++|.++.. |..+..+   ++|++|++++|.++.+|..+.  ++|+.|++++|+++.+|. +..+++|+.+++++|++++
T Consensus       232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence            99999976 6666655   699999999999998888664  799999999999998866 6788999999999999875


Q ss_pred             h
Q psy3049         134 D  134 (157)
Q Consensus       134 ~  134 (157)
                      .
T Consensus       309 ~  309 (310)
T 4glp_A          309 P  309 (310)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=1e-13  Score=103.56  Aligned_cols=88  Identities=25%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             hhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049          46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG  125 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~  125 (157)
                      +..+++|+.+++++|.++.++  +..+++|+.|++++|.++.++  +..+++|+.+++++|+++.+|  +..+++|++++
T Consensus       166 ~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEE
T ss_pred             cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEE
Confidence            344566667777777666654  556667777777777776653  566777888888888888776  67778888888


Q ss_pred             ccCCCCCChhHHhh
Q psy3049         126 LHGNPLSKDYMKIY  139 (157)
Q Consensus       126 l~~n~~~~~~~~~~  139 (157)
                      +++|.+.+..+..+
T Consensus       240 l~~N~l~~~~~~~l  253 (457)
T 3bz5_A          240 CSVNPLTELDVSTL  253 (457)
T ss_dssp             CCSSCCSCCCCTTC
T ss_pred             eeCCcCCCcCHHHC
Confidence            88888877654444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=113.71  Aligned_cols=135  Identities=23%  Similarity=0.285  Sum_probs=112.2

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCC-ccc-cccccccccccEEe
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL-TRL-SGDISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~-~~~~~~~~~L~~L~   79 (157)
                      +++.++.+|.   ..++++.|++++|.++.+++.         .+..+++|++|++++|.. ..+ +..+..+++|++|+
T Consensus        12 s~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~---------~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A           12 RFCNLTQVPQ---VLNTTERLLLSFNYIRTVTAS---------SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             SCCCSSCCCS---SCTTCCEEEEESCCCCEECSS---------SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             cCCCCCCCCC---CCCCcCEEECCCCcCCccChh---------HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            4678889987   457899999999999987543         256788999999999954 455 56789999999999


Q ss_pred             ccCCCCCCC-ChhhhCccccceEEcCCCcccC-cchh--hcCcCCCcEEEccCCCCCChhH-HhhcCCCChHHH
Q psy3049          80 ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRT-LPYE--LGKLFQIQILGLHGNPLSKDYM-KIYNEPNGTQKL  148 (157)
Q Consensus        80 l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~-l~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~~l  148 (157)
                      +++|.++.+ |..+..+++|++|++++|.++. ++..  +.++++|++|++++|.+.+..+ ..++.++.++.+
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            999999876 7789999999999999999985 5554  8999999999999999987754 567777776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=5.2e-14  Score=92.30  Aligned_cols=117  Identities=27%  Similarity=0.360  Sum_probs=99.0

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCc
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDL   95 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~   95 (157)
                      ..+.+++++++++.+|..+            .++++.+++++|.++.+++ .+..+++|++|++++|.++.++. .+..+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL   75 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEEecCCCCccCCCCC------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence            3578899999998887643            2479999999999998765 46789999999999999998875 46889


Q ss_pred             cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+..++.++
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence            9999999999999988765 78999999999999999988877777666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=1.5e-13  Score=102.57  Aligned_cols=124  Identities=29%  Similarity=0.474  Sum_probs=66.5

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC----------CCChhhhcCcccceEecccCCCcccccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK----------NLSPDLWQFTHLTALYMNDNNLTRLSGDIS   70 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~   70 (157)
                      +++|.++.+| +++.+++|+.|++++|.++.+|+....++          .+| .+..+++|+++++++|.++.+|... 
T Consensus       138 L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~-  214 (454)
T 1jl5_A          138 VSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP-  214 (454)
T ss_dssp             CCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-
T ss_pred             CcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-
Confidence            4567777776 57777778888888877777665432221          122 3444455555555555554443221 


Q ss_pred             ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          71 LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                        .+|+.|++++|.++.+|. +..+++|+++++++|+++.+|..   .++|+++++++|.+.+
T Consensus       215 --~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          215 --LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             --TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred             --CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence              245555555555554442 44555555555555555554432   2444555555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=2.5e-14  Score=103.27  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=107.7

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcce-ecCcc-ccCC--------------CCC-ChhhhcCcccceEecccCCC
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLR-YLPSE-IGAV--------------KNL-SPDLWQFTHLTALYMNDNNL   62 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~-~~~~~-~~~~--------------~~~-~~~~~~~~~L~~l~l~~~~~   62 (157)
                      |++|+|+.+|+. |.++++|+.|++++|.+. .++++ +..+              ..+ |..+..+++|+++++++|.+
T Consensus        37 Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred             ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc
Confidence            468999999865 899999999999999975 45543 2222              223 34467788999999999887


Q ss_pred             cccccc-c-------------------------ccc-ccccEEeccCCCCCCCChhhhCccccceEEcCC-CcccCcchh
Q psy3049          63 TRLSGD-I-------------------------SLL-INLRTLDISNNKLRYLPSEIGDLIYLRELCLNN-NNLRTLPYE  114 (157)
Q Consensus        63 ~~~~~~-~-------------------------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~-n~l~~l~~~  114 (157)
                      +.+++. +                         ..+ ..++.|++++|.++.++.......+++.+++.+ |.++.+|..
T Consensus       117 ~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred             ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH
Confidence            654321 0                         111 246678888888888877766777888898874 788888865


Q ss_pred             -hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049         115 -LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       115 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                       +..+++|+++++++|.++..++..+..+..++
T Consensus       197 ~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             HhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence             78899999999999999987776666555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.6e-13  Score=89.57  Aligned_cols=98  Identities=24%  Similarity=0.361  Sum_probs=85.4

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      +++|.++.+|..+  .++++.|++++|.++.+++.         .+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus        16 ~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           16 CSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPG---------VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             CTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT---------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eCCCCcCccCccC--CCCCcEEEcCCCcCCccChh---------hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            4789999999766  38899999999999988653         256788999999999999988764 57899999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCccc
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLR  109 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~  109 (157)
                      +++|.++.++. .+..+++|+.+++++|.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99999998876 5888999999999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.49  E-value=7.3e-15  Score=105.16  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             hhcCcccceEecccC-CCcc--ccccccccccccEEeccCC-CCCC--CChhhhCcc-ccceEEcCCCc--cc--Ccchh
Q psy3049          46 LWQFTHLTALYMNDN-NLTR--LSGDISLLINLRTLDISNN-KLRY--LPSEIGDLI-YLRELCLNNNN--LR--TLPYE  114 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~l~~l~l~~n~--l~--~l~~~  114 (157)
                      +..+++|++|++++| .++.  ++..+..+++|++|++++| .++.  ++..+..++ +|+.|++++|.  ++  .++..
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~  217 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  217 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence            344556666666666 4442  3333455556666666666 5552  344455555 56666666653  32  34444


Q ss_pred             hcCcCCCcEEEccCCC-CCChhHHhhcCCCCh
Q psy3049         115 LGKLFQIQILGLHGNP-LSKDYMKIYNEPNGT  145 (157)
Q Consensus       115 ~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~l  145 (157)
                      +.++++|+++++++|. +++..+..+..++.+
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            5555666666666655 444444444444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.47  E-value=2.2e-13  Score=105.14  Aligned_cols=133  Identities=28%  Similarity=0.262  Sum_probs=83.9

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC----------CChhhhcCcccceEecccCCCcccccccc-
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN----------LSPDLWQFTHLTALYMNDNNLTRLSGDIS-   70 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-   70 (157)
                      ++|.|+.+|..   +++|+.|++++|.++.+|.....+..          +|   ..+++|+.|++++|.++.++.... 
T Consensus       129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~  202 (622)
T 3g06_A          129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE  202 (622)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence            34445544432   25666666666666655543332221          12   123566777777776665443211 


Q ss_pred             ----------------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          71 ----------------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        71 ----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                                      .+++|+.|++++|.++.+|   ..+++|+.|++++|.++.+|.   .+++|+++++++|.+. .
T Consensus       203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~  275 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-R  275 (622)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-S
T ss_pred             hhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-c
Confidence                            1256777777777777776   345778888888888888877   6688999999999988 4


Q ss_pred             hHHhhcCCCChHH
Q psy3049         135 YMKIYNEPNGTQK  147 (157)
Q Consensus       135 ~~~~~~~~~~l~~  147 (157)
                      +|..+..++.++.
T Consensus       276 lp~~l~~l~~L~~  288 (622)
T 3g06_A          276 LPESLIHLSSETT  288 (622)
T ss_dssp             CCGGGGGSCTTCE
T ss_pred             CCHHHhhccccCE
Confidence            5667777666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=7.2e-16  Score=103.02  Aligned_cols=130  Identities=17%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhh
Q psy3049          13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI   92 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   92 (157)
                      +.....++.++++.+.+...   +..+..+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~---~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBC---CTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred             HHhcccccCcchheeEeccc---cCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh
Confidence            45667777777877777642   2234455567888999999999999999887 8888999999999999999999888


Q ss_pred             hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH-HhhcCCCChHH
Q psy3049          93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM-KIYNEPNGTQK  147 (157)
Q Consensus        93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~~  147 (157)
                      ..+++|+.|++++|+++.+| .+..+++|+++++++|.+.+..+ ..+..++.++.
T Consensus        90 ~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence            88899999999999999987 58899999999999999997654 56766665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.44  E-value=1.3e-12  Score=94.05  Aligned_cols=103  Identities=29%  Similarity=0.368  Sum_probs=73.2

Q ss_pred             EEEecCC-cceecCccccCCCCCChhhhcCcccceEeccc-CCCcccc-ccccccccccEEeccCCCCCCCCh-hhhCcc
Q psy3049          21 TLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMND-NNLTRLS-GDISLLINLRTLDISNNKLRYLPS-EIGDLI   96 (157)
Q Consensus        21 ~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~   96 (157)
                      .++.+++ +++.+|+ +          ..+++|+.|++++ |.++.++ ..+..+.+|+.|+|++|.++.++. .+..++
T Consensus        12 ~v~~~~~n~l~~ip~-l----------~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-L----------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTTTTT-S----------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCccCC-C----------CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            4566665 6666654 3          2455678888875 7777765 457778888888888888876644 567788


Q ss_pred             ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +|+.|+|++|+++.+|..+.....|++|++.+|++.+.
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence            88888888888887776544333488888888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.42  E-value=4.5e-14  Score=103.08  Aligned_cols=22  Identities=32%  Similarity=0.224  Sum_probs=11.9

Q ss_pred             cchhhhcccCCCEEEecCCcce
Q psy3049           9 LSGDISLLINLRTLDISNNKLR   30 (157)
Q Consensus         9 l~~~~~~l~~L~~L~l~~~~l~   30 (157)
                      ++..+..+++|+.|++++|.++
T Consensus       114 l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          114 LIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHhCCCCCEEECcCCCCC
Confidence            4444555555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.40  E-value=2.4e-12  Score=96.01  Aligned_cols=124  Identities=30%  Similarity=0.337  Sum_probs=60.6

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------ChhhhcC-cccceEecccCCCcccccccccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------SPDLWQF-THLTALYMNDNNLTRLSGDISLLIN   74 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~   74 (157)
                      ++|.++.+|..   .++|+.|++++|.++.+|+....++.+      -..+... ++|+++++++|.++.+| .++.+++
T Consensus        79 ~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~  154 (454)
T 1jl5_A           79 NNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSF  154 (454)
T ss_dssp             TTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred             cCCccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCC
Confidence            45555555431   245555555555555554433222111      0000011 35666666666665554 3555566


Q ss_pred             ccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049          75 LRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      |++|++++|.++.+|...   .+|+++++++|.++.+| .++++++|+++++++|.+.+
T Consensus       155 L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          155 LKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            666666666555554322   35555555555555554 34555555555555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.38  E-value=6.1e-13  Score=97.07  Aligned_cols=118  Identities=25%  Similarity=0.257  Sum_probs=79.4

Q ss_pred             hhhcccCCCEEEecCCcceec--CccccCCCCCChhhhcCcccceEecccCCCc-----cccccccccccccEEeccCCC
Q psy3049          12 DISLLINLRTLDISNNKLRYL--PSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISLLINLRTLDISNNK   84 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~   84 (157)
                      .+..+++|+.|++++|+++..  ...      ++..+..+++|+.|++++|.++     .++..+..+++|+.|++++|.
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHL------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHH------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHH------HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            345566666666666666510  000      0013456677888888888874     345566777888888888888


Q ss_pred             CCC-----CChhhhC--ccccceEEcCCCcccC-----cchhh-cCcCCCcEEEccCCCCCChh
Q psy3049          85 LRY-----LPSEIGD--LIYLRELCLNNNNLRT-----LPYEL-GKLFQIQILGLHGNPLSKDY  135 (157)
Q Consensus        85 ~~~-----~~~~~~~--~~~l~~l~l~~n~l~~-----l~~~~-~~~~~L~~l~l~~n~~~~~~  135 (157)
                      ++.     ++..+..  +++|+.|++++|.++.     +|..+ .++++|+++++++|++++..
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            773     3455533  7888888888888886     67665 56788888888888888665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=1.8e-13  Score=97.87  Aligned_cols=145  Identities=17%  Similarity=0.167  Sum_probs=89.2

Q ss_pred             CCCCCCc--cchhhhcccCCCEEEecCCccee-cCccccCCC-----------C-----CChhhhcCcccceEecccC-C
Q psy3049           2 NDNNLTR--LSGDISLLINLRTLDISNNKLRY-LPSEIGAVK-----------N-----LSPDLWQFTHLTALYMNDN-N   61 (157)
Q Consensus         2 ~~n~i~~--l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~-----------~-----~~~~~~~~~~L~~l~l~~~-~   61 (157)
                      ++|.++.  ++..+..+++|+.|++++|.++. .+..++.++           .     ++..+..+++|++|++++| .
T Consensus       101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence            4455542  44445666666666666666552 222222111           1     1223456778888888888 7


Q ss_pred             Ccc--ccccccccc-cccEEeccCC--CCC--CCChhhhCccccceEEcCCCc-cc-CcchhhcCcCCCcEEEccCCC-C
Q psy3049          62 LTR--LSGDISLLI-NLRTLDISNN--KLR--YLPSEIGDLIYLRELCLNNNN-LR-TLPYELGKLFQIQILGLHGNP-L  131 (157)
Q Consensus        62 ~~~--~~~~~~~~~-~L~~L~l~~~--~~~--~~~~~~~~~~~l~~l~l~~n~-l~-~l~~~~~~~~~L~~l~l~~n~-~  131 (157)
                      ++.  ++..+..++ +|++|++++|  .++  .++..+..+++|+.|++++|. ++ ..+..+.++++|+++++++|. +
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence            773  455567777 8888888888  343  355666677888888888887 55 445567778888888888873 4


Q ss_pred             CChhHHhhcCCCChH
Q psy3049         132 SKDYMKIYNEPNGTQ  146 (157)
Q Consensus       132 ~~~~~~~~~~~~~l~  146 (157)
                      .......++.++.++
T Consensus       261 ~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          261 IPETLLELGEIPTLK  275 (336)
T ss_dssp             CGGGGGGGGGCTTCC
T ss_pred             CHHHHHHHhcCCCCC
Confidence            444333454444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=3.2e-12  Score=91.94  Aligned_cols=98  Identities=27%  Similarity=0.279  Sum_probs=84.2

Q ss_pred             CCC-CCCccchhhhcccCCCEEEecC-CcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049           2 NDN-NLTRLSGDISLLINLRTLDISN-NKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL   78 (157)
Q Consensus         2 ~~n-~i~~l~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L   78 (157)
                      +++ .++.+|. +..+.+|+.|++++ |.++.+++.         .|..+++|+.|++++|.++.+++ .+..+++|+.|
T Consensus        16 ~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           16 TRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG---------GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh---------HhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            345 8999999 99999999999996 999988864         25678899999999999998764 57899999999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCccc
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLR  109 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~  109 (157)
                      +|++|.++.+|........|+.|++.+|.+.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            9999999999875544445999999999888

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=3.1e-12  Score=92.67  Aligned_cols=18  Identities=22%  Similarity=0.329  Sum_probs=8.3

Q ss_pred             hhccc-CCCEEEecCCcce
Q psy3049          13 ISLLI-NLRTLDISNNKLR   30 (157)
Q Consensus        13 ~~~l~-~L~~L~l~~~~l~   30 (157)
                      +..++ +|+.|++++|.++
T Consensus        46 l~~~~~~L~~L~Ls~N~l~   64 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLG   64 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGG
T ss_pred             HHhCCCceeEEECcCCCCC
Confidence            33444 4444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.26  E-value=1.1e-11  Score=89.35  Aligned_cols=100  Identities=22%  Similarity=0.321  Sum_probs=68.4

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccc-cccccccccE-E
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSG-DISLLINLRT-L   78 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~-~~~~~~~L~~-L   78 (157)
                      +++.++.||..+  .++++.|++++|+++.+|++.         |.++++|++|++++|.+.. ++. .+..++++.. +
T Consensus        17 ~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~---------f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           17 QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA---------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             ESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS---------STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             cCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH---------HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            467889999766  368999999999999998753         4567778888888887643 432 3455555544 4


Q ss_pred             eccCCCCCCCC-hhhhCccccceEEcCCCcccCcc
Q psy3049          79 DISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLP  112 (157)
Q Consensus        79 ~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~  112 (157)
                      .+..|+++.++ ..+..+++|+++++++|+++.++
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~  120 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  120 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCC
Confidence            44556666653 35566677777777776666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.26  E-value=1.3e-11  Score=89.37  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=25.7

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPS   34 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~   34 (157)
                      ++.|.++...++ +...++|+.|++++|.++..+.
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~   39 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST   39 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHH
Confidence            577888865555 4455569999999999987653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=2.8e-12  Score=95.25  Aligned_cols=89  Identities=25%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             cccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC-ChhhhC-----ccccceEEcCCCccc-----Ccch
Q psy3049          50 THLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL-PSEIGD-----LIYLRELCLNNNNLR-----TLPY  113 (157)
Q Consensus        50 ~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-----~~~l~~l~l~~n~l~-----~l~~  113 (157)
                      +.|+.|++++|.++.     ++..+..+++|+.|++++|.++.. +..+..     .++|+.|++++|.++     .++.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            467777777777763     233455667888888888877633 222221     567888888888887     5666


Q ss_pred             hhcCcCCCcEEEccCCCCCChhHHh
Q psy3049         114 ELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus       114 ~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                      .+..+++|+++++++|.+.+.....
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~~~~~  417 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDAGILQ  417 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred             HHHhCCCccEEECCCCCCCHHHHHH
Confidence            6777888888888888887664433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=3.2e-11  Score=86.32  Aligned_cols=98  Identities=11%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             CcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCccccc-eEEcCCCcccCcch-hhcCcCCCcEE
Q psy3049          49 FTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLR-ELCLNNNNLRTLPY-ELGKLFQIQIL  124 (157)
Q Consensus        49 ~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~-~l~l~~n~l~~l~~-~~~~~~~L~~l  124 (157)
                      +++|+.+++++|.++.++. .|..+.+|+.+++.+| ++.++. ++..+.+|+ .+.+.. .++.++. .|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6789999999999998865 4788999999999987 777754 788899999 999988 7888864 58899999999


Q ss_pred             EccCCCCCChhHHhhcCCCChHHH
Q psy3049         125 GLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus       125 ~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      ++..|.+....+..|.++.+++.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            999999999999999988887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=1.1e-11  Score=92.12  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=12.5

Q ss_pred             hhhhcccCCCEEEecCCcce
Q psy3049          11 GDISLLINLRTLDISNNKLR   30 (157)
Q Consensus        11 ~~~~~l~~L~~L~l~~~~l~   30 (157)
                      ..+..+++|+.|++++|.++
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCH
T ss_pred             HHHhhCCCCCEEECcCCCcc
Confidence            33455666777777766665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=90.11  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CcccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cch
Q psy3049          49 FTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPY  113 (157)
Q Consensus        49 ~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~  113 (157)
                      .+.|+.|++++|.++.     ++..+...++|++|++++|.++.     ++..+...++|+.|++++|.++.     +..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4668888888888763     23334567788888888888863     24456667788888888888873     334


Q ss_pred             hhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049         114 ELGKLFQIQILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus       114 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  142 (157)
                      .+...++|+++++++|.+.+.....+.++
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            45567888999999998887776666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=9.7e-11  Score=83.78  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             cccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCc-EEEccCCCCCChhHHhhcCCCChHHH
Q psy3049          72 LINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQ-ILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus        72 ~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      +++|+.+++.+|.++.++. .+..+.+|+.+++.+| ++.++.. |.++.+|+ .+++.. .+....+..|.++.+++.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            5678888888888887765 6778888888888887 7777654 77888888 888877 6676667778777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=84.47  Aligned_cols=131  Identities=19%  Similarity=0.153  Sum_probs=89.7

Q ss_pred             CCCCCCCccchh-hhcc-----cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccc----
Q psy3049           1 MNDNNLTRLSGD-ISLL-----INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDI----   69 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~----   69 (157)
                      +++|.|+..... +..+     .+|+.|++++|.++.....        .-...+++++.|++++|.++... ..+    
T Consensus        79 Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           79 LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR--------TLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH--------HTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH--------HHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            456666643322 3322     6788888888887632110        00123457899999999987431 222    


Q ss_pred             -cccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049          70 -SLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSKDYMKI  138 (157)
Q Consensus        70 -~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~~~~~  138 (157)
                       ...++|+.|++++|.++.     ++..+...++|++|++++|.++.     ++..+...++|++|++++|.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             235789999999999873     44556778899999999999883     3455677889999999999998765444


Q ss_pred             h
Q psy3049         139 Y  139 (157)
Q Consensus       139 ~  139 (157)
                      +
T Consensus       231 l  231 (372)
T 3un9_A          231 L  231 (372)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.87  E-value=6.4e-10  Score=73.40  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             hhcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCC
Q psy3049          13 ISLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLR   86 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~   86 (157)
                      +...+.|+.|++++| .++.-..     ..+.+.+...++|++|++++|.+..     +...+....+|++|++++|.++
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTL-----KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHH-----HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHH-----HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            456788999999999 8874111     0111234456789999999999973     2334556678999999999998


Q ss_pred             C-----CChhhhCccccceEEc--CCCcccC-----cchhhcCcCCCcEEEccCCCCCCh
Q psy3049          87 Y-----LPSEIGDLIYLRELCL--NNNNLRT-----LPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        87 ~-----~~~~~~~~~~l~~l~l--~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      .     +...+...++|++|++  ++|.++.     +...+...++|++++++.|.+...
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            3     4556777789999999  8899983     445567778999999999987644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.79  E-value=4.1e-09  Score=80.52  Aligned_cols=128  Identities=14%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             hcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC
Q psy3049          14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL   88 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~   88 (157)
                      ..+++|+.|++++|.+++.....     ++.-...+++|+.|++++|.++.     ++..+..+++|+.|++.+|.++.+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l  235 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKW-----LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL  235 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHH-----HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred             hhCCCCCEEECccccccCcchhH-----HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence            46778888888888765322110     00112233444555555444431     111223344444444444444333


Q ss_pred             ChhhhC---------------------------ccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH-Hhhc
Q psy3049          89 PSEIGD---------------------------LIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM-KIYN  140 (157)
Q Consensus        89 ~~~~~~---------------------------~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~  140 (157)
                      +..+..                           +++++.+++..+....+|..+..+++|+++++++|.+.+... ..+.
T Consensus       236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~  315 (592)
T 3ogk_B          236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ  315 (592)
T ss_dssp             HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred             HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence            333333                           334444444444334555556677778888888777665444 3344


Q ss_pred             CCCChH
Q psy3049         141 EPNGTQ  146 (157)
Q Consensus       141 ~~~~l~  146 (157)
                      .++.++
T Consensus       316 ~~~~L~  321 (592)
T 3ogk_B          316 KCPNLE  321 (592)
T ss_dssp             TCTTCC
T ss_pred             hCcCCC
Confidence            555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.71  E-value=6.4e-09  Score=79.48  Aligned_cols=17  Identities=12%  Similarity=0.124  Sum_probs=9.0

Q ss_pred             hcccCCCEEEecCCcce
Q psy3049          14 SLLINLRTLDISNNKLR   30 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~   30 (157)
                      ..+++|+.|++++|.++
T Consensus       189 ~~~~~L~~L~L~~n~~~  205 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFA  205 (592)
T ss_dssp             HHCCCCCEEECTTCCCS
T ss_pred             hcCCCccEEEeeccCCC
Confidence            34555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.56  E-value=1.7e-07  Score=68.89  Aligned_cols=31  Identities=32%  Similarity=0.515  Sum_probs=22.8

Q ss_pred             CCCccchh-hhcccCCCEEEecCCcceecCcc
Q psy3049           5 NLTRLSGD-ISLLINLRTLDISNNKLRYLPSE   35 (157)
Q Consensus         5 ~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~   35 (157)
                      .++.++.. |.+|.+|+.+++..|.++.++..
T Consensus       167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            45556543 78888899999988888777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=1.5e-07  Score=62.02  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             hhcCcccceEecccC-CCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC----
Q psy3049          46 LWQFTHLTALYMNDN-NLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT----  110 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~----  110 (157)
                      +...+.|+.|++++| .+..     +...+...+++++|++++|.++.     +...+...++|++|++++|.++.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            445788999999999 8873     23345567889999999999973     34556667899999999999993    


Q ss_pred             -cchhhcCcCCCcEEEc--cCCCCCChhHHhh
Q psy3049         111 -LPYELGKLFQIQILGL--HGNPLSKDYMKIY  139 (157)
Q Consensus       111 -l~~~~~~~~~L~~l~l--~~n~~~~~~~~~~  139 (157)
                       +...+...++|+++++  +.|.+.+.....+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence             4556778889999999  8899997755444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=4.3e-08  Score=68.20  Aligned_cols=65  Identities=32%  Similarity=0.432  Sum_probs=49.9

Q ss_pred             cccccccEEeccCCCCCCC---ChhhhCccccceEEcCCCcccCcchhhcCcC--CCcEEEccCCCCCChh
Q psy3049          70 SLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNNNLRTLPYELGKLF--QIQILGLHGNPLSKDY  135 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~--~L~~l~l~~n~~~~~~  135 (157)
                      ..++.|+.|++++|.++.+   +..+..+++|+.|++++|+++.+. .+..+.  .|++|+|++|++++..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence            3577899999999988865   355667889999999999998763 233344  8999999999988643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.37  E-value=3.2e-08  Score=75.56  Aligned_cols=16  Identities=6%  Similarity=0.032  Sum_probs=8.7

Q ss_pred             cccCCCEEEecCCcce
Q psy3049          15 LLINLRTLDISNNKLR   30 (157)
Q Consensus        15 ~l~~L~~L~l~~~~l~   30 (157)
                      .+++|+.|+++++.++
T Consensus       103 ~~~~L~~L~L~~~~~~  118 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVT  118 (594)
T ss_dssp             HCTTCCEEEEESCBCC
T ss_pred             hCCCCCeEEeeCcEEc
Confidence            3455555565555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=9.3e-07  Score=61.48  Aligned_cols=77  Identities=27%  Similarity=0.357  Sum_probs=59.8

Q ss_pred             cCcccceEecccCCCcccc---ccccccccccEEeccCCCCCCCChhhhCcc--ccceEEcCCCccc-Ccc-------hh
Q psy3049          48 QFTHLTALYMNDNNLTRLS---GDISLLINLRTLDISNNKLRYLPSEIGDLI--YLRELCLNNNNLR-TLP-------YE  114 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~l~~l~l~~n~l~-~l~-------~~  114 (157)
                      .++.|+.|++++|.++.++   ..+..+++|+.|++++|.++.+. .+..+.  +|+.|++.+|.+. .+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4778999999999998654   44568899999999999998762 233333  8999999999987 344       23


Q ss_pred             hcCcCCCcEEE
Q psy3049         115 LGKLFQIQILG  125 (157)
Q Consensus       115 ~~~~~~L~~l~  125 (157)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67889999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.29  E-value=7.2e-08  Score=73.65  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             cchhhhcccCCCEEEecCCcceecCc-cccCCCCCChhhhcCcccceEecccCC--Cc--cccccccccccccEEeccCC
Q psy3049           9 LSGDISLLINLRTLDISNNKLRYLPS-EIGAVKNLSPDLWQFTHLTALYMNDNN--LT--RLSGDISLLINLRTLDISNN   83 (157)
Q Consensus         9 l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~   83 (157)
                      ++.....+++|+.|++++|.+++... .+..      -...+++|+.|++++|.  +.  .+......+++|+.|++.+|
T Consensus       148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~------~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          148 LAAIAATCRNLKELDLRESDVDDVSGHWLSH------FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHHHHCTTCCEEECTTCEEECCCGGGGGG------SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHHHHhCCCCCEEeCcCCccCCcchHHHHH------HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            33335578999999999998775321 1111      11234566666666665  21  11111233456666666655


Q ss_pred             -CCCCCChhhhCccccceEE
Q psy3049          84 -KLRYLPSEIGDLIYLRELC  102 (157)
Q Consensus        84 -~~~~~~~~~~~~~~l~~l~  102 (157)
                       .++.++..+..+++|+.++
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEE
T ss_pred             CcHHHHHHHHhcCCcceEcc
Confidence             2223333333444444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.28  E-value=4.3e-06  Score=61.46  Aligned_cols=136  Identities=15%  Similarity=0.236  Sum_probs=91.4

Q ss_pred             CCCCccchh-hhcccCCCEEEecCCcceecCcccc------------CCCCC-ChhhhcCcccceEecccCCCc-----c
Q psy3049           4 NNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIG------------AVKNL-SPDLWQFTHLTALYMNDNNLT-----R   64 (157)
Q Consensus         4 n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~------------~~~~~-~~~~~~~~~L~~l~l~~~~~~-----~   64 (157)
                      +.++.|+.. |.++.+|+.+.+..+ ++.++...-            .+..+ ...|..+++|+.+.+.++.+.     .
T Consensus       212 ~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~  290 (401)
T 4fdw_A          212 VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM  290 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred             CchheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence            346666654 788888999888764 555544221            11122 234667788888888877664     3


Q ss_pred             cc-ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049          65 LS-GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNE  141 (157)
Q Consensus        65 ~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~  141 (157)
                      ++ ..|..+.+|+.+.+.. .++.++. .+..+.+|+.+.+..+ ++.++.. |.++ +|+.+++.+|.........|.+
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            43 4567788888888874 4666643 6777888999988554 7777644 6677 9999999988777666666655


Q ss_pred             CC
Q psy3049         142 PN  143 (157)
Q Consensus       142 ~~  143 (157)
                      ++
T Consensus       368 ~~  369 (401)
T 4fdw_A          368 FP  369 (401)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.24  E-value=4e-06  Score=52.02  Aligned_cols=56  Identities=32%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             EEeccCCCCC--CCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          77 TLDISNNKLR--YLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        77 ~L~l~~~~~~--~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      .++-+++.++  .+|..+  ..+++.|+|++|+|+.++.. +..+++|++++|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            3444444444  444432  13455666666666665543 45556666666666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=1.3e-05  Score=58.18  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             cccccEEeccCCCCCC-CChhh---hCccccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049          72 LINLRTLDISNNKLRY-LPSEI---GDLIYLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSKDYMKIY  139 (157)
Q Consensus        72 ~~~L~~L~l~~~~~~~-~~~~~---~~~~~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~~~~~~  139 (157)
                      +++|+.|++.+|.++. .+..+   ..+++|+.|+++.|.++.     ++..+.++++|+.|+++.|.+++.....+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence            5566666666665542 11122   135666777776666653     22223455667777777666665554444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=3.7e-06  Score=60.96  Aligned_cols=120  Identities=16%  Similarity=0.120  Sum_probs=79.8

Q ss_pred             cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-ccccc--ccccccEEeccC--C
Q psy3049           9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDIS--LLINLRTLDISN--N   83 (157)
Q Consensus         9 l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~--~~~~L~~L~l~~--~   83 (157)
                      ++..+..+++|+.|.++++.-..+++           + .+++|+.|++..+.+..- ...+.  .+++|+.|++..  +
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-----------~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~  231 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-----------K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE  231 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-----------C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-----------c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc
Confidence            44556778999999998873112221           1 367899999998887632 12232  678999998853  1


Q ss_pred             C------CCCCChhh--hCccccceEEcCCCcccC-cchh---hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          84 K------LRYLPSEI--GDLIYLRELCLNNNNLRT-LPYE---LGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        84 ~------~~~~~~~~--~~~~~l~~l~l~~n~l~~-l~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      .      +..+...+  ..+++|++|++.+|.+.. .+..   ...+++|++|+|+.|.+.+..+..+.
T Consensus       232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence            1      11222222  247899999999998873 2222   24688999999999999886555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=9.1e-06  Score=52.95  Aligned_cols=84  Identities=11%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             ccceEecccCCCccc-cccccccccccEEeccCC-CCCCC-ChhhhC----ccccceEEcCCC-cccCc-chhhcCcCCC
Q psy3049          51 HLTALYMNDNNLTRL-SGDISLLINLRTLDISNN-KLRYL-PSEIGD----LIYLRELCLNNN-NLRTL-PYELGKLFQI  121 (157)
Q Consensus        51 ~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~----~~~l~~l~l~~n-~l~~l-~~~~~~~~~L  121 (157)
                      .|+.++++++.++.. -..+..+++|+.|++++| .++.. -..+..    .++|++|++++| ++++- -..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            589999999988742 244677889999999998 47632 123443    247999999998 47732 1346788999


Q ss_pred             cEEEccCCC-CCCh
Q psy3049         122 QILGLHGNP-LSKD  134 (157)
Q Consensus       122 ~~l~l~~n~-~~~~  134 (157)
                      ++|++++++ +++.
T Consensus       142 ~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          142 KYLFLSDLPGVKEK  155 (176)
T ss_dssp             CEEEEESCTTCCCH
T ss_pred             CEEECCCCCCCCch
Confidence            999999875 5543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.78  E-value=0.00016  Score=52.32  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=57.5

Q ss_pred             hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049          46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ  122 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~  122 (157)
                      +..+..++.+.+..+ +..++ ..+..+.+|+.+.+.++.++.++ ..+..+.+|+.+.+..+ ++.|.. .|.++.+|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            445556666666543 34333 34566777888888777777664 36777778888877543 666654 366777777


Q ss_pred             EEEccCCCCCChhHHhhcCC
Q psy3049         123 ILGLHGNPLSKDYMKIYNEP  142 (157)
Q Consensus       123 ~l~l~~n~~~~~~~~~~~~~  142 (157)
                      .+.+..+ +.......|.++
T Consensus       337 ~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          337 TISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCCCCTT-CCEECTTTTTTS
T ss_pred             EEEECCc-cCEEchhHhhCC
Confidence            7777543 443334444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=1.6e-05  Score=52.68  Aligned_cols=113  Identities=15%  Similarity=0.139  Sum_probs=76.2

Q ss_pred             cccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCC--
Q psy3049          15 LLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLR--   86 (157)
Q Consensus        15 ~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~--   86 (157)
                      +-+.|+.|+++++ ++..-..     ..+.+.+..-+.|+.|++++|.+..     +...+..-++|+.|+++.|.|+  
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga-----~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERI-----RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHH-----HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             cCCCccEEECCCCCCCCHHHH-----HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            4467999999885 7763110     0111234445679999999999872     2333456678999999999998  


Q ss_pred             ---CCChhhhCccccceEEcCCC---ccc-----CcchhhcCcCCCcEEEccCCCCC
Q psy3049          87 ---YLPSEIGDLIYLRELCLNNN---NLR-----TLPYELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        87 ---~~~~~~~~~~~l~~l~l~~n---~l~-----~l~~~~~~~~~L~~l~l~~n~~~  132 (157)
                         .+.+.+..-..|+.|+++++   .+.     .+...+..-+.|..++++.|.+.
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               23455666778999999765   344     23344666788999999876543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.70  E-value=2.6e-05  Score=50.78  Aligned_cols=85  Identities=7%  Similarity=0.106  Sum_probs=61.2

Q ss_pred             cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCC-Cccc-cccccc----cccccEEeccCC-CCCCC-
Q psy3049          17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN-LTRL-SGDISL----LINLRTLDISNN-KLRYL-   88 (157)
Q Consensus        17 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~-~~~~~~----~~~L~~L~l~~~-~~~~~-   88 (157)
                      ..|+.||++++.++..  ++       ..+.++++|+.|++++|. ++.. -..+..    .++|++|++++| +++.- 
T Consensus        61 ~~L~~LDLs~~~Itd~--GL-------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI--GF-------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGG--GG-------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCCccHH--HH-------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4799999999988742  12       124578899999999995 6632 223333    347999999998 58742 


Q ss_pred             ChhhhCccccceEEcCCCc-ccC
Q psy3049          89 PSEIGDLIYLRELCLNNNN-LRT  110 (157)
Q Consensus        89 ~~~~~~~~~l~~l~l~~n~-l~~  110 (157)
                      -..+..+++|+.|++++|. ++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence            2346678999999999984 553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=8.8e-05  Score=49.16  Aligned_cols=89  Identities=17%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             cCcccceEecccC-CCcc-----ccccccccccccEEeccCCCCC-----CCChhhhCccccceEEcCCCccc-----Cc
Q psy3049          48 QFTHLTALYMNDN-NLTR-----LSGDISLLINLRTLDISNNKLR-----YLPSEIGDLIYLRELCLNNNNLR-----TL  111 (157)
Q Consensus        48 ~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~l~~l~l~~n~l~-----~l  111 (157)
                      .-+.|+.|+++++ .+..     +...+..-+.|+.|+|.+|.++     .+...+..-..|+.|+++.|.|+     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3567999999986 7762     2344566788999999999998     34556777789999999999999     34


Q ss_pred             chhhcCcCCCcEEEccCC---CCCChhH
Q psy3049         112 PYELGKLFQIQILGLHGN---PLSKDYM  136 (157)
Q Consensus       112 ~~~~~~~~~L~~l~l~~n---~~~~~~~  136 (157)
                      ...+..-..|++|+|++|   .+.....
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            455677788999999865   4554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.41  E-value=0.0015  Score=47.61  Aligned_cols=120  Identities=12%  Similarity=0.234  Sum_probs=77.6

Q ss_pred             hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-h
Q psy3049          13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-S   90 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~   90 (157)
                      |.++..|+.+.+..+ +..+...         .+..+..|+.+.+. +.++.++ ..|..+.+|+.+.+..+ ++.+. .
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~---------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTG---------AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTT---------TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             eeecccccEEecccc-cceecCc---------ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            666777777777554 2233332         25567778888885 3455554 34677888999988764 55554 4


Q ss_pred             hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049          91 EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus        91 ~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      ++..+.+|+.+.+..+ ++.+.. .|.++.+|+.+++.++...   ...+..+.+++.+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i  383 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNL  383 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEE
Confidence            6778889999988654 777764 4788899999998876422   2344555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.32  E-value=0.0012  Score=48.01  Aligned_cols=105  Identities=11%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCCh
Q psy3049          12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPS   90 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~   90 (157)
                      .+.++..|+.+.+. +.+..+++..         |..+.+|+.+.+..+ ++.+. ..|..+.+|+.+.+..+ ++.+..
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~a---------F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~  350 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESV---------FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE  350 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTT---------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred             ccccccccccccCC-CcccccCcee---------ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence            37788999999986 4577777653         678889999999765 56554 45778899999999654 777754


Q ss_pred             -hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCC
Q psy3049          91 -EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNP  130 (157)
Q Consensus        91 -~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  130 (157)
                       ++..+.+|+.+.+.++... + ..+.....|+.+.+..+.
T Consensus       351 ~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             GGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred             hHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence             7889999999999887432 1 345677788888776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00041  Score=42.83  Aligned_cols=55  Identities=31%  Similarity=0.378  Sum_probs=37.1

Q ss_pred             CEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCC
Q psy3049          20 RTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLR   86 (157)
Q Consensus        20 ~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~   86 (157)
                      ..++.++++++  .+|..+.            ++++.|++++|.++.++. .+..+.+|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35667777776  6665431            247778888888877754 3566777788888877665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.27  E-value=0.0013  Score=47.61  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049          46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ  122 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~  122 (157)
                      +..+..|+.+.+..+ ++.+. ..+..+.+++.+.+..+ ++.++ ..+..+.+|+.+.+.++.++.++. .|.++.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            456677888888765 45443 34567788888888654 55554 367888999999999988998875 488899999


Q ss_pred             EEEccCCCCCChhHHhhcCCCChHHH
Q psy3049         123 ILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus       123 ~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      .+.+..+ +.......|.++.+|+.+
T Consensus       314 ~i~lp~~-l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          314 SVTLPTA-LKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred             EEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence            9999654 565666778777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.13  E-value=0.0028  Score=46.12  Aligned_cols=95  Identities=11%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049          46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ  122 (157)
Q Consensus        46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~  122 (157)
                      +..+.+|+.+.+..+ ++.+. ..+..+.+|+.+++..+ ++.+. .++..+.+|+.+.+..+ ++.+.. .|.++.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            445566777776544 44443 34566777888877643 55554 36777788888888665 666654 477778888


Q ss_pred             EEEccCCCCCChhHHhhcCCCCh
Q psy3049         123 ILGLHGNPLSKDYMKIYNEPNGT  145 (157)
Q Consensus       123 ~l~l~~n~~~~~~~~~~~~~~~l  145 (157)
                      .+++..+- . .+...|.++.++
T Consensus       370 ~i~lp~~~-~-~~~~~F~~c~~L  390 (394)
T 4fs7_A          370 KVELPKRL-E-QYRYDFEDTTKF  390 (394)
T ss_dssp             EEEEEGGG-G-GGGGGBCTTCEE
T ss_pred             EEEECCCC-E-EhhheecCCCCC
Confidence            88876541 1 223445555444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.98  E-value=0.0024  Score=46.47  Aligned_cols=99  Identities=12%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-h
Q psy3049          13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-S   90 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~   90 (157)
                      +..+.+|+.+.+..+ +..+++.         .|..+.+|+.+.+..+ ++.+. ..|..+.+|+.+.+..+ ++.+. .
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~---------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEE---------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTT---------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             ccccccccccccccc-cceechh---------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence            445555666655443 4444433         3667888999999754 66664 45778899999999776 66664 4


Q ss_pred             hhhCccccceEEcCCCcccCcchhhcCcCCCcEE
Q psy3049          91 EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQIL  124 (157)
Q Consensus        91 ~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l  124 (157)
                      ++..+.+|+.+.+..+ ++.+...+.++++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            7888999999998654 55555557777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 19/90 (21%)

Query: 16  LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
             +L  L++SNNKL  LP+                 L  L  + N+L  +        NL
Sbjct: 283 PPSLEELNVSNNKLIELPALPP-------------RLERLIASFNHLAEVPELPQ---NL 326

Query: 76  RTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
           + L +  N LR  P     +  LR   +N+
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLR---MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 2e-08
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 47  WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
                L  L +++N L  L         L  L  S N L  +P    +L   ++L +  N
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNL---KQLHVEYN 334

Query: 107 NLRTLPYELGKLFQIQI 123
            LR  P     +  +++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 7e-07
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 47  WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
                   LY  + +   +     L  +L  L++SNNKL  LP+       L  L  + N
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN 314

Query: 107 NLRTLPYELGKLFQIQILGLHGNPLSK 133
           +L  +P     L   + L +  NPL +
Sbjct: 315 HLAEVPELPQNL---KQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 74  NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
               L+++N  L  LP     L     L  + N+L  LP     L  + +   +   L
Sbjct: 39  QAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 50  THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
                L +N+  L+ L     L  +L +L  S N L  LP     L  L     N   L 
Sbjct: 38  RQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 110 TLPYEL 115
            LP  L
Sbjct: 95  DLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 16/76 (21%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
           +++N L  L         L  L  S N L  +P                 +L  L++  N
Sbjct: 291 VSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ-------------NLKQLHVEYN 334

Query: 61  NLTRLSGDISLLINLR 76
            L         + +LR
Sbjct: 335 PLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
               L+++N  L  LP                 HL +L  + N+LT L     L  +L++
Sbjct: 39  QAHELELNNLGLSSLPELPP-------------HLESLVASCNSLTELP---ELPQSLKS 82

Query: 78  LDISNNKLRYLPSEIGDLIY 97
           L + NN L+ L      L Y
Sbjct: 83  LLVDNNNLKALSDLPPLLEY 102

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL-----------WQF 49
           + +N ++ L+  +S L  L  L +  N++  +    G     + +L              
Sbjct: 248 LANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 50  THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
            +LT L +  NN++ +S  +S L  L+ L  +NNK+  + S + +L  +  L   +N + 
Sbjct: 307 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQIS 364

Query: 110 TLPYELGKLFQIQILGLHGN 129
            L   L  L +I  LGL+  
Sbjct: 365 DLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGAVKNLSPDLWQFTHLTALY-- 56
           +N N L  + G ++ L NL  LD++NN++  L   S +  +  L     Q ++++ L   
Sbjct: 226 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 284

Query: 57  ------MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
                   + N       IS L NL  L +  N +  +   +  L  L+ L   NN +  
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD 343

Query: 111 LPYELGKLFQIQILGLHGNPLS 132
           +   L  L  I  L    N +S
Sbjct: 344 VS-SLANLTNINWLSAGHNQIS 364

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 1   MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
           +   +LT L   +  L+ +  LD+S+N+LR LP  + A++ L               +  
Sbjct: 5   LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 49  FTHLTALYMNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYL 98
              L  L + +N L + +    +     L  L++  N L         L  +
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 20  RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLD 79
           R L +++  L  L             L Q   +T L ++ N L  L   ++ L  L  L 
Sbjct: 1   RVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 49

Query: 80  ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134
            S+N L  +         L+EL L NN L+       L    ++ +L L GN L ++
Sbjct: 50  ASDNALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 18  NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
           +LR +  S+  L  +P ++                  L + +N +T +  GD   L NL 
Sbjct: 11  HLRVVQCSDLGLEKVPKDL------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 77  TLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDY 135
           TL + NNK+  + P     L+ L  L L+ N L+ LP ++     +Q L +H N ++K  
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR 116

Query: 136 MKIYNEPNGTQKL 148
             ++N  N    +
Sbjct: 117 KSVFNGLNQMIVV 129

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 46  LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS--NNKLRYLPSEIGDLIYLRELCL 103
           L     L  LY+  N L  L   +              NN        +  L  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 104 NNNNLRTLPYELGKLFQIQILGLHGNPL 131
             N+L T+P        +    LHGNP 
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 40  KNLSPDLWQFTHLTALYMNDNN--LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY 97
           K L P L   T         NN      +G ++ L NL TL +  N L  +P        
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 98  LRELCLNNNNLR 109
           L    L+ N   
Sbjct: 197 LPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDIS 70
          ++S + +   ++     L  LP ++                T L++++N L   S   + 
Sbjct: 5  EVSKVASHLEVNCDKRNLTALPPDLP------------KDTTILHLSENLLYTFSLATLM 52

Query: 71 LLINLRTLDISNNK 84
              L  L++   +
Sbjct: 53 PYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 68  DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGL 126
           ++S + +   ++     L  LP ++        L L+ N L T     L    ++  L L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 127 HGNPLSKDYMKIY 139
               L+K  +   
Sbjct: 63  DRAELTKLQVDGT 75

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 47  WQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
               +L  L + +N +   L   ++ L  L +L++S N L     + G+L         N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 106 NNL 108
           N  
Sbjct: 301 NKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-05
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 74  NLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
           NL  LD+ NN++   LP  +  L +L  L ++ NNL     + G L +  +     N  
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 9e-05
 Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 17/100 (17%)

Query: 17  INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISL 71
           +++++LDI   +L    S+    + L            + ++D  LT      +S  + +
Sbjct: 2   LDIQSLDIQCEEL----SDARWAELLP----LLQQCQVVRLDDCGLTEARCKDISSALRV 53

Query: 72  LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
              L  L++ +N+L     ++G    L+ L   +  ++ L
Sbjct: 54  NPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKL 89

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 72  LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
                 LDIS  ++  LPS    +L  LR    +  NL+ LP
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP 239

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 61  NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
            L   +   +  +  R LD+   K+  + +    L     +  ++N +R L 
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 44  PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL 103
             L   + LT L  +DN ++ +S  ++ L NL  + + NN++  +   + +   L  + L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 104 NN 105
            N
Sbjct: 225 TN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1e-17  Score=110.07  Aligned_cols=122  Identities=20%  Similarity=0.309  Sum_probs=105.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCccee-cCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEe
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~   79 (157)
                      +++.++.||..+.  .+++.|++++|+++. ++..         .|..+++|+.|++++|.+..++ ..+..+++|++|+
T Consensus        16 s~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~---------~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          16 TGRGLKEIPRDIP--LHTTELLLNDNELGRISSDG---------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSC---------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             eCCCcCccCCCCC--CCCCEEEeCCCCCccccccc---------ccCCCceEeeeeccccccccccccccccccccceee
Confidence            6788999997763  689999999999985 4333         2667889999999999998764 5678899999999


Q ss_pred             ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049          80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +++|+++.++. .+..+++|++|++++|+++.++.. |..+++|+++++++|++.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            99999998865 678899999999999999998765 78999999999999999865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.9e-17  Score=111.01  Aligned_cols=145  Identities=30%  Similarity=0.360  Sum_probs=114.1

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC--------------ChhhhcCcccceEecccCCCcccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL--------------SPDLWQFTHLTALYMNDNNLTRLS   66 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~L~~l~l~~~~~~~~~   66 (157)
                      |++|.|+.++. ++.+++|+.|++++|+++..+..+..++.+              +..+..+.+++++++++|.++.++
T Consensus        62 L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          62 LDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             CTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceec
Confidence            56788888764 567888999999999888776655433321              233456678899999999988776


Q ss_pred             cc-ccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049          67 GD-ISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus        67 ~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  144 (157)
                      +. +..++.++.+++++|.++.++. .+..+++|++|++++|+++.+|..+..+++|+.++|++|++.+.        +.
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd--------C~  212 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN--------CE  212 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS--------GG
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC--------cc
Confidence            44 5678899999999999998864 57789999999999999999999888999999999999999866        34


Q ss_pred             hHHHHHHHHh
Q psy3049         145 TQKLLSYLLD  154 (157)
Q Consensus       145 l~~l~~~~~~  154 (157)
                      ++.+..|+.+
T Consensus       213 ~~~l~~wl~~  222 (266)
T d1p9ag_         213 ILYFRRWLQD  222 (266)
T ss_dssp             GHHHHHHHHH
T ss_pred             hHHHHHHHHh
Confidence            5555566543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=114.33  Aligned_cols=145  Identities=27%  Similarity=0.268  Sum_probs=98.4

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccc--cC----------CCCCChhhhcCcccceEecccCCCcccc-
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI--GA----------VKNLSPDLWQFTHLTALYMNDNNLTRLS-   66 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~--~~----------~~~~~~~~~~~~~L~~l~l~~~~~~~~~-   66 (157)
                      |++|.|+.++.. |..+++|+.|++++|+++.++...  ..          +...+..+..++.|++++++++.+..++ 
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~  117 (266)
T d1p9ag_          38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL  117 (266)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred             CcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeec
Confidence            578888888754 888888999999888888776421  11          1122344455566666666666655443 


Q ss_pred             ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049          67 GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNG  144 (157)
Q Consensus        67 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  144 (157)
                      ..+..+.+++.+++.+|.++.++. .+..++.++.+++++|+++.++.. +..+++|++|+|++|.+. .+|+.+..+..
T Consensus       118 ~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence            234456667777777777776654 455678888899999988877654 778889999999999888 44555544555


Q ss_pred             hH
Q psy3049         145 TQ  146 (157)
Q Consensus       145 l~  146 (157)
                      ++
T Consensus       197 L~  198 (266)
T d1p9ag_         197 LP  198 (266)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=8.2e-17  Score=98.62  Aligned_cols=83  Identities=30%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             CcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEc
Q psy3049          49 FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGL  126 (157)
Q Consensus        49 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l  126 (157)
                      ++.|+++++++|.++.+|+.++.+++|+.|++++|.++.++ .+..+++|+++++++|+++.++.  .+..+++|+++++
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            34445555555555444444444455555555555554443 24444555555555555554432  2444555555555


Q ss_pred             cCCCCC
Q psy3049         127 HGNPLS  132 (157)
Q Consensus       127 ~~n~~~  132 (157)
                      ++|+++
T Consensus        98 ~~N~i~  103 (124)
T d1dcea3          98 QGNSLC  103 (124)
T ss_dssp             TTSGGG
T ss_pred             CCCcCC
Confidence            555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.9e-17  Score=98.69  Aligned_cols=112  Identities=27%  Similarity=0.327  Sum_probs=95.0

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +++|.|+.++ .+..+++|++|++++|+++++|+.          +..+++|+.+++++|.++.++ .+..+++|+++++
T Consensus         5 Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~----------~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           5 LAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA----------LAALRCLEVLQASDNALENVD-GVANLPRLQELLL   72 (124)
T ss_dssp             CTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGG----------GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             cCCCCCCCCc-ccccCCCCCEEECCCCccCcchhh----------hhhhhcccccccccccccccC-ccccccccCeEEC
Confidence            6899999997 489999999999999999988764          457789999999999999886 4788999999999


Q ss_pred             cCCCCCCCC--hhhhCccccceEEcCCCcccCcc---hh-hcCcCCCcEE
Q psy3049          81 SNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLP---YE-LGKLFQIQIL  124 (157)
Q Consensus        81 ~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~---~~-~~~~~~L~~l  124 (157)
                      ++|.++.++  ..+..+++|+.+++++|.++.++   .. +..+|+++.+
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999876  46788999999999999998554   22 4556777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=102.21  Aligned_cols=111  Identities=26%  Similarity=0.332  Sum_probs=84.1

Q ss_pred             hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChh-
Q psy3049          13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE-   91 (157)
Q Consensus        13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-   91 (157)
                      +.+..++++|++++|+++.++..          +..++.|++|++++|.++.++ .+..+++|++|++++|.++.++.. 
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~----------~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENL----------GATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG----------GGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             ccCcCcCcEEECCCCCCCccCcc----------ccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccc
Confidence            45666788888888888877542          235667888888888888774 467788888888888888877653 


Q ss_pred             hhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCCh
Q psy3049          92 IGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        92 ~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      +..+++++.+++++|+++.++.  .+..+++|+++++++|+++..
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccc
Confidence            4567888888888888887764  477888888888888877544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.1e-16  Score=109.40  Aligned_cols=146  Identities=20%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccC---------------CCCC-ChhhhcCcccceEecccCCCc
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGA---------------VKNL-SPDLWQFTHLTALYMNDNNLT   63 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~---------------~~~~-~~~~~~~~~L~~l~l~~~~~~   63 (157)
                      |++|.|+.+|+. |.++++|+.|++++|.+..++.....               +..+ +..+..+++|+++++++|.+.
T Consensus        39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~  118 (284)
T d1ozna_          39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (284)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccc
Confidence            578999999865 89999999999999998876543311               1111 233445555666666555544


Q ss_pred             ------------------------cccc-cccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCc-chhhc
Q psy3049          64 ------------------------RLSG-DISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTL-PYELG  116 (157)
Q Consensus        64 ------------------------~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l-~~~~~  116 (157)
                                              .+++ .+..+.+++.|++.+|.++.++ ..+..+++|+.+++++|+++.+ |..+.
T Consensus       119 ~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhh
Confidence                                    3321 2333445555555555555443 2444555666666666666644 34456


Q ss_pred             CcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049         117 KLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       117 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      .+++++++++++|.+.+..++.|..+..++
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hhhhcccccccccccccccccccccccccC
Confidence            666666666666666666666666555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.2e-17  Score=103.60  Aligned_cols=114  Identities=23%  Similarity=0.311  Sum_probs=98.8

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD   79 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~   79 (157)
                      |++|.|+.+++.+..+++|+.|++++|++++++.           +..+++|++|++++|.++.+++. +..+++++.|+
T Consensus        25 L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~-----------~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          25 LRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC-----------CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCCCCCCccCccccccccCCEEECCCCCCCccCC-----------cccCcchhhhhcccccccCCCccccccccccccce
Confidence            6899999998777889999999999999998743           44677899999999999988765 46799999999


Q ss_pred             ccCCCCCCCCh--hhhCccccceEEcCCCcccCcch----hhcCcCCCcEEE
Q psy3049          80 ISNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILG  125 (157)
Q Consensus        80 l~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~  125 (157)
                      +++|.++.++.  .+..+++|+++++.+|.++..|.    .+..+|+|+++|
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999997764  67889999999999999997764    378899999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.8e-15  Score=99.62  Aligned_cols=139  Identities=22%  Similarity=0.362  Sum_probs=103.7

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.|+.++ .+..+++|+.|++++|+++.+++ ++.++.+            .+.+..++.|+.++++++.....+ .
T Consensus        47 l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~  123 (199)
T d2omxa2          47 ADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-P  123 (199)
T ss_dssp             CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-G
T ss_pred             CCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccccccccccccccccccccccccc-c
Confidence            4577788774 47788899999999998887654 3332221            124666778888888888776543 4


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+++|+.+++++|.++.++ .+..+++++.+++.+|+++.++. ++++++|+++++++|++++..  .++.++.++
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~  197 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS--VLAKLTNLE  197 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCS
T ss_pred             cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc--cccCCCCCC
Confidence            567888999999999887664 47788999999999999998864 789999999999999988742  355555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.6e-15  Score=103.85  Aligned_cols=144  Identities=26%  Similarity=0.354  Sum_probs=111.3

Q ss_pred             CCCCCccchh-hhcccCCCEEEecCCcceecCccc-c-------------CCCCCCh-hhhcCcccceEecccCCCcccc
Q psy3049           3 DNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-G-------------AVKNLSP-DLWQFTHLTALYMNDNNLTRLS   66 (157)
Q Consensus         3 ~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~-~-------------~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~   66 (157)
                      .+.++.+++. +.++++|+.|+++.|.+..++... .             .+..+++ .+..++.++.|++++|.++.++
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            4566666544 788888888888888877554322 1             2233443 3556788999999999999875


Q ss_pred             -ccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049          67 -GDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPN  143 (157)
Q Consensus        67 -~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  143 (157)
                       ..+..+++|+.+++.+|.++.+ |..+..+++++++++++|.+..++. .+..+++|+++++++|++.+.        +
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~--------C  241 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD--------C  241 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS--------G
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC--------c
Confidence             4567899999999999999866 6788899999999999999998875 588999999999999999876        3


Q ss_pred             ChHHHHHHHHh
Q psy3049         144 GTQKLLSYLLD  154 (157)
Q Consensus       144 ~l~~l~~~~~~  154 (157)
                      .++.+..|+++
T Consensus       242 ~~~~l~~~l~~  252 (284)
T d1ozna_         242 RARPLWAWLQK  252 (284)
T ss_dssp             GGHHHHHHHHH
T ss_pred             cchHHHHHHHh
Confidence            45555556543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1e-14  Score=96.75  Aligned_cols=140  Identities=24%  Similarity=0.345  Sum_probs=88.3

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.|+.+++ +..+++|+.|++++|.++++++ ++.++.+            .+.+..++.|+.+++.+|.+..++ .
T Consensus        53 l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~  129 (210)
T d1h6ta2          53 ANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-G  129 (210)
T ss_dssp             CTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-G
T ss_pred             CcCCCCCCchh-HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccccccccccc-c
Confidence            35667776653 6778888888888887776653 1111100            012334455555555555554432 3


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                      +..++.++.+++.+|.++..+ .+..+++|+.+++++|+++.++. +.++++|+.+++++|.+++. + .+..++.++.
T Consensus       130 l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~  204 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDV  204 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSE
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCE
Confidence            444555666666666555432 35567888999999999888764 78889999999999998764 2 4666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.59  E-value=1.1e-17  Score=110.53  Aligned_cols=119  Identities=28%  Similarity=0.382  Sum_probs=100.6

Q ss_pred             CCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCC
Q psy3049           5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNK   84 (157)
Q Consensus         5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (157)
                      .++.++..+..+++|+.|++++|+++.++.           +..+++|+.|++++|.++.++.....+.+|+.|++.+|.
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~-----------l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKISS-----------LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCCC-----------HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE
T ss_pred             chhhhhhHHhcccccceeECcccCCCCccc-----------ccCCccccChhhccccccccccccccccccccccccccc
Confidence            355667779999999999999999987742           557789999999999999887655666789999999999


Q ss_pred             CCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCChh
Q psy3049          85 LRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKDY  135 (157)
Q Consensus        85 ~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~~  135 (157)
                      ++.++ .+..+++|+.|++++|+++.++.  .+..+++|+++++++|++....
T Consensus       105 i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         105 IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            98764 47788999999999999998864  5889999999999999876543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.6e-15  Score=99.45  Aligned_cols=118  Identities=26%  Similarity=0.354  Sum_probs=100.6

Q ss_pred             CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-c-cccccccccccEEeccCCCCCCCC-hhhhCc
Q psy3049          19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-L-SGDISLLINLRTLDISNNKLRYLP-SEIGDL   95 (157)
Q Consensus        19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~   95 (157)
                      .+.++.++++++.+|+++.            +.+++|++++|.++. + +..+..+++|+.|++++|.++.++ ..+..+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp------------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCEEEEeCCCcCccCCCCC------------CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            4678999999999987642            468999999999975 4 345788999999999999998775 578889


Q ss_pred             cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049          96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKL  148 (157)
Q Consensus        96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l  148 (157)
                      ++|+.|++++|+++.++.. |.++++|++|+|++|.+++..++.|..++.++++
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            9999999999999998764 8899999999999999999999988877766543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=95.60  Aligned_cols=138  Identities=21%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccccc
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGDI   69 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~~   69 (157)
                      +.+.++... ....+.+++.|+++++.+.+++. +..++.+            ...+..+++|+++++++|.+..++ .+
T Consensus        26 ~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~-~l  102 (199)
T d2omxa2          26 GKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PL  102 (199)
T ss_dssp             TCSSTTSEE-CHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCCCcc-CHHHhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCccccccccccccccccc-cc
Confidence            445566543 24568899999999999987642 2111100            112333444444444444443332 13


Q ss_pred             cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      ..++.|+.+++.++..... ..+..+++++.+++++|++..++ .+..+++++++++.+|.+.+..  .++.++.++
T Consensus       103 ~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~  175 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLE  175 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             ccccccccccccccccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc--cccCCCCCC
Confidence            3444444444444444332 22445566666666666666554 3556667777777777666542  244444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.4e-14  Score=94.98  Aligned_cols=117  Identities=24%  Similarity=0.350  Sum_probs=68.8

Q ss_pred             hcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhh
Q psy3049          14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG   93 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~   93 (157)
                      ..+..++.|+++++.+..++.           +..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++ .+.
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~-----------l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~  109 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQG-----------IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLK  109 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-----------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGT
T ss_pred             HHhcCccEEECcCCCCCCchh-----------HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccc
Confidence            467899999999999987652           2344555666666665555442 344555556666555555443 244


Q ss_pred             CccccceEEcCCC----------------------cccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          94 DLIYLRELCLNNN----------------------NLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        94 ~~~~l~~l~l~~n----------------------~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      .+++|+.+++.+|                      .++..+ .+.++++|+++++++|.+.+..+  ++.++.++
T Consensus       110 ~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~  181 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (210)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCC
Confidence            4455555555544                      444322 24556777777777777765432  54555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=7.2e-15  Score=102.81  Aligned_cols=134  Identities=21%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             CCCC-ccchhhhcccCCCEEEecCCcceecCcc-ccCC--------------CCCChhhhcCcccceEecccCCCc-ccc
Q psy3049           4 NNLT-RLSGDISLLINLRTLDISNNKLRYLPSE-IGAV--------------KNLSPDLWQFTHLTALYMNDNNLT-RLS   66 (157)
Q Consensus         4 n~i~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~--------------~~~~~~~~~~~~L~~l~l~~~~~~-~~~   66 (157)
                      |+++ .+|++++++++|+.|++++|++..+++. +...              ..+|..+..++.++.+++++|.++ .+|
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip  166 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccc
Confidence            3444 4555555555555555555555543321 1111              123667777888888888888765 334


Q ss_pred             cccccccc------------------------------------------------ccEEeccCCCCCCCChhhhCcccc
Q psy3049          67 GDISLLIN------------------------------------------------LRTLDISNNKLRYLPSEIGDLIYL   98 (157)
Q Consensus        67 ~~~~~~~~------------------------------------------------L~~L~l~~~~~~~~~~~~~~~~~l   98 (157)
                      ..+..+..                                                ++.+++.++.++..+..+..++++
T Consensus       167 ~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L  246 (313)
T d1ogqa_         167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL  246 (313)
T ss_dssp             GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33332222                                                223333333333223334445677


Q ss_pred             ceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049          99 RELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMK  137 (157)
Q Consensus        99 ~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~  137 (157)
                      +.+++++|+++ .+|..++++++|++++|++|.++|.+|+
T Consensus       247 ~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            77777778777 6777777788888888888877776664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-14  Score=88.91  Aligned_cols=122  Identities=25%  Similarity=0.241  Sum_probs=93.1

Q ss_pred             hcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccC-CCcccc-ccccccccccEEeccCCCCCCCC-h
Q psy3049          14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN-NLTRLS-GDISLLINLRTLDISNNKLRYLP-S   90 (157)
Q Consensus        14 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~   90 (157)
                      +.+.....++.+++++.++|..          +..+++++.|++.++ .++.++ ..|..+++|+.|++++|+++.++ .
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~----------l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHH----------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTT----------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CCcCCCCeEEecCCCCccCccc----------ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence            3444556677777777766654          345678899999766 488775 45778899999999999999884 5


Q ss_pred             hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHH
Q psy3049          91 EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLL  153 (157)
Q Consensus        91 ~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~  153 (157)
                      .+..+++++.|++++|+++.+|..+.....++++++++|++.+.        +.++.+..|..
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~--------C~~~~l~~~~~  129 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS--------CALRWLQRWEE  129 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC--------GGGHHHHHHHH
T ss_pred             cccccccccceeccCCCCcccChhhhccccccccccCCCcccCC--------chHHHHHHHHH
Confidence            68889999999999999999987766666899999999999754        45555555553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=7.6e-14  Score=93.39  Aligned_cols=140  Identities=18%  Similarity=0.273  Sum_probs=99.1

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccc-
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSG-   67 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~-   67 (157)
                      +.+|.|+.++ .+..+++|+.|++++|.+.++++ +..+..+            .+.+.+++.|+.++++++....... 
T Consensus        48 l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~  125 (227)
T d1h6ua2          48 AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL  125 (227)
T ss_dssp             CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGG
T ss_pred             CCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccchh
Confidence            4678888884 58889999999999998886653 2211111            1345567777777777775542211 


Q ss_pred             --------------------cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEcc
Q psy3049          68 --------------------DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLH  127 (157)
Q Consensus        68 --------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~  127 (157)
                                          .+..+++++++++.+|.++..+. +..+++|+.+++++|+++.++. +.++++|++++++
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLK  203 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECT
T ss_pred             ccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECc
Confidence                                13445678889998888775543 6778999999999999998765 7888999999999


Q ss_pred             CCCCCChhHHhhcCCCChH
Q psy3049         128 GNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus       128 ~n~~~~~~~~~~~~~~~l~  146 (157)
                      +|++++..+  ++.++.++
T Consensus       204 ~N~lt~i~~--l~~l~~L~  220 (227)
T d1h6ua2         204 NNQISDVSP--LANTSNLF  220 (227)
T ss_dssp             TSCCCBCGG--GTTCTTCC
T ss_pred             CCcCCCCcc--cccCCCCC
Confidence            999887643  55555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=7e-14  Score=99.68  Aligned_cols=139  Identities=28%  Similarity=0.365  Sum_probs=98.9

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.++.++ .+..+++++.+++++|+++.+++. +..+.+            ...+..++.++.+.+..|.++.++ .
T Consensus       226 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~  302 (384)
T d2omza2         226 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-P  302 (384)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-G
T ss_pred             CCCCCCCCcc-hhhcccccchhccccCccCCCCcc-cccccCCEeeccCcccCCCCcccccccccccccccccccccc-c
Confidence            4677787764 577888888888888888866531 111100            112344555666666666665443 3


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ  146 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~  146 (157)
                      +..+.+++.+++++|.++.++. +..+++|+.|++++|+++.++ .+.++++|+++++++|.+++..+  ++.++.++
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            5667888999999998887753 677899999999999999876 47889999999999999987754  56555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=1.5e-13  Score=95.65  Aligned_cols=129  Identities=20%  Similarity=0.322  Sum_probs=96.7

Q ss_pred             hhhcccCCCEEEecCCcceecCcccc-CCC-----------CCChhhhcCcccceEecccCCCcccc-ccccccccccEE
Q psy3049          12 DISLLINLRTLDISNNKLRYLPSEIG-AVK-----------NLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTL   78 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~-----------~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L   78 (157)
                      .+..+++|+.+++++|.+..++..+. ++.           ..+..+.+++.++.+++++|.++.++ ..+..+++|+.|
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             ccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            45667777777777777776654331 111           12345667788999999999998764 456788899999


Q ss_pred             eccCCCCCCCChhhhCccccceEEcCCCcccCcchh-------hcCcCCCcEEEccCCCCC--ChhHHhhc
Q psy3049          79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-------LGKLFQIQILGLHGNPLS--KDYMKIYN  140 (157)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-------~~~~~~L~~l~l~~n~~~--~~~~~~~~  140 (157)
                      ++++|.++.+|..+..+++|++|++++|+++.++..       .....+|+.+++++|++.  ...|..|.
T Consensus       225 ~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         225 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             ECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             ecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            999999999988888999999999999999987643       235678999999999886  34455554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=2.3e-13  Score=94.69  Aligned_cols=72  Identities=32%  Similarity=0.330  Sum_probs=55.9

Q ss_pred             ccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049          69 ISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN  140 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  140 (157)
                      +..++.++.|++++|.++.++ ..+..+++|+.|++++|+++.+|..+.++++|+++++++|+++......|.
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             hhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhcc
Confidence            445566777788888777663 456778889999999999998888888899999999999988876555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=4.6e-14  Score=98.65  Aligned_cols=131  Identities=27%  Similarity=0.361  Sum_probs=98.5

Q ss_pred             CCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCCC--------------------------------------C
Q psy3049           3 DNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKN--------------------------------------L   42 (157)
Q Consensus         3 ~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~--------------------------------------~   42 (157)
                      +|.+. .+|..+..++.++.+++++|.+. .+|+.+..+..                                      +
T Consensus       134 ~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC
T ss_pred             cccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34433 35556777777777777777665 35543332111                                      1


Q ss_pred             ChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCC
Q psy3049          43 SPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQ  120 (157)
Q Consensus        43 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~  120 (157)
                      |..+..++.++.+++.++.+...++.++.+++++.|++++|+++ .+|..+..+++|++|++++|+++ .+|. ++++++
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence            33445567788889999988766667788899999999999998 78999999999999999999999 7775 688999


Q ss_pred             CcEEEccCCC-CCCh
Q psy3049         121 IQILGLHGNP-LSKD  134 (157)
Q Consensus       121 L~~l~l~~n~-~~~~  134 (157)
                      |+.+++.+|+ +.|.
T Consensus       293 L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         293 FDVSAYANNKCLCGS  307 (313)
T ss_dssp             SCGGGTCSSSEEEST
T ss_pred             CCHHHhCCCccccCC
Confidence            9999999997 4554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=87.30  Aligned_cols=99  Identities=24%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             CCCCCCccchhhhcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEe
Q psy3049           2 NDNNLTRLSGDISLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLD   79 (157)
Q Consensus         2 ~~n~i~~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~   79 (157)
                      +++.++.+|..+..+++++.|++.++ .++.++..         .|..+++|+.|++++|.++.++ ..+..+++|++|+
T Consensus        16 ~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~---------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG---------GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCccCcccccCccccCeeecCCCccccccCch---------hhccccccCcceeeccccCCccccccccccccccee
Confidence            46777788888889999999999766 59888764         3667889999999999999885 4578899999999


Q ss_pred             ccCCCCCCCChhhhCccccceEEcCCCccc
Q psy3049          80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLR  109 (157)
Q Consensus        80 l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~  109 (157)
                      +++|+++.+|........++.+++++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            999999999887666678999999999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.2e-12  Score=87.45  Aligned_cols=81  Identities=25%  Similarity=0.346  Sum_probs=69.6

Q ss_pred             hhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcE
Q psy3049          44 PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI  123 (157)
Q Consensus        44 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~  123 (157)
                      ..+..++.++.+++.+|.++..+ .++.+++|+.|++++|.++.++. +..+++|++|++++|+++.++. +.++++|++
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~  221 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFI  221 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred             hhhccccccccccccccccccch-hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCE
Confidence            34567788999999999887654 36788999999999999988754 7788999999999999999875 789999999


Q ss_pred             EEcc
Q psy3049         124 LGLH  127 (157)
Q Consensus       124 l~l~  127 (157)
                      ++++
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.9e-12  Score=92.08  Aligned_cols=124  Identities=25%  Similarity=0.387  Sum_probs=101.7

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCcccc------------CCCCCChhhhcCcccceEecccCCCcccccc
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG------------AVKNLSPDLWQFTHLTALYMNDNNLTRLSGD   68 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~------------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~   68 (157)
                      +++|.++.+++ +..+++|+.++++++.+..+++...            .+.. ...+..+++++.+++++|.++.+++ 
T Consensus       248 l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~~-  324 (384)
T d2omza2         248 LANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP-  324 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGG-
T ss_pred             cccCccCCCCc-ccccccCCEeeccCcccCCCCcccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCcc-
Confidence            46788887764 7889999999999999987654211            0111 2356678899999999999998753 


Q ss_pred             ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCC
Q psy3049          69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGN  129 (157)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  129 (157)
                      +..+++|+.|++++|.++.++ .+..+++|+++++++|+++.++. +.++++|+.+++++|
T Consensus       325 l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            778999999999999998876 57889999999999999998875 789999999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=90.56  Aligned_cols=147  Identities=16%  Similarity=0.154  Sum_probs=101.5

Q ss_pred             CCCCCCCccchh-hhcccCCCEEEecCCccee-cCc-cccCCC--------------CC-ChhhhcCcccceEecccCCC
Q psy3049           1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRY-LPS-EIGAVK--------------NL-SPDLWQFTHLTALYMNDNNL   62 (157)
Q Consensus         1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~-~~~-~~~~~~--------------~~-~~~~~~~~~L~~l~l~~~~~   62 (157)
                      +++|.|+.+|.. |.++++|++|++++|.+.. +++ .+..+.              .. +..+..++.|+.+++.++.+
T Consensus        36 Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          36 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             EESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             CcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            467889988865 8899999999999998764 333 222221              11 33456778899999988877


Q ss_pred             cccccc--ccc------------------------c-ccccEEeccCCCCCCCChhhhCccccceE-EcCCCcccCcchh
Q psy3049          63 TRLSGD--ISL------------------------L-INLRTLDISNNKLRYLPSEIGDLIYLREL-CLNNNNLRTLPYE  114 (157)
Q Consensus        63 ~~~~~~--~~~------------------------~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l-~l~~n~l~~l~~~  114 (157)
                      ...+..  ...                        + ..++.+++.+|.++.++.......++..+ .+.+|+++.+|..
T Consensus       116 ~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~  195 (242)
T d1xwdc1         116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND  195 (242)
T ss_dssp             CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHH
Confidence            633211  101                        1 24555677777777666555555555555 4677889999865


Q ss_pred             -hcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049         115 -LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK  147 (157)
Q Consensus       115 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~  147 (157)
                       +.++++|+++++++|++....+..+.++..++.
T Consensus       196 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             HhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence             788999999999999999877777877766654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=9.2e-15  Score=96.21  Aligned_cols=113  Identities=28%  Similarity=0.361  Sum_probs=92.6

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      +++|.|+.++ .+..+++|+.|++++|+++.++..          ...++.|++|++++|.++.++ .+..+++|+.|++
T Consensus        55 Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~----------~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          55 LSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENL----------DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             CSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSH----------HHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             CcccCCCCcc-cccCCccccChhhccccccccccc----------ccccccccccccccccccccc-ccccccccccccc
Confidence            5788999986 589999999999999999887642          223457999999999998774 4678899999999


Q ss_pred             cCCCCCCCCh--hhhCccccceEEcCCCcccCcch-----------hhcCcCCCcEEE
Q psy3049          81 SNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPY-----------ELGKLFQIQILG  125 (157)
Q Consensus        81 ~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~-----------~~~~~~~L~~l~  125 (157)
                      ++|.++.++.  .+..+++|+.+++++|.+...+.           .+.++|+|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999998763  68889999999999998874322           156789999986

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.5e-10  Score=76.42  Aligned_cols=99  Identities=23%  Similarity=0.381  Sum_probs=69.2

Q ss_pred             CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-c-ccccccccccEEec
Q psy3049           3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-S-GDISLLINLRTLDI   80 (157)
Q Consensus         3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~-~~~~~~~~L~~L~l   80 (157)
                      +..++.+|+.+.  ++++.|++++|.++.+|+..         |.++++|+++++++|.+... + ..+..++.++.+.+
T Consensus        17 ~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~---------f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          17 ESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGA---------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SCSCSSCCSCSC--SCCSEEEEESCCCCEECTTT---------TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCCCCcCCCCC--CCCCEEECcCCcCCccChhH---------hhccchhhhhhhccccccceeeccccccccccccccc
Confidence            456788887653  57999999999999988742         55777888888888877643 2 34566777777766


Q ss_pred             cC-CCCCCCC-hhhhCccccceEEcCCCcccCcc
Q psy3049          81 SN-NKLRYLP-SEIGDLIYLRELCLNNNNLRTLP  112 (157)
Q Consensus        81 ~~-~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~  112 (157)
                      .+ +.+...+ ..+..+++|+++++.+|++...+
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccc
Confidence            54 3555443 44666777777777777666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.04  E-value=7.5e-10  Score=77.36  Aligned_cols=98  Identities=31%  Similarity=0.346  Sum_probs=76.6

Q ss_pred             cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCcc
Q psy3049          17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLI   96 (157)
Q Consensus        17 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   96 (157)
                      .+++.|++++++++.+|+.             .++|++|++++|+++.+|..   +.+|+.|++.+|.++.++..   .+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~-------------~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL-------------PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PP   98 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC-------------CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CT
T ss_pred             cCCCEEEeCCCCCCCCCCC-------------CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cc
Confidence            4688999999999888753             24688999999999888754   45788889999888876542   24


Q ss_pred             ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049          97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                      .|++|++++|.+..+|. ++.+++|++++++.+.+.+.
T Consensus        99 ~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_          99 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCC
T ss_pred             ccccccccccccccccc-hhhhccceeecccccccccc
Confidence            68899999999988875 57788999999988876643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.90  E-value=4.2e-09  Score=73.45  Aligned_cols=112  Identities=32%  Similarity=0.393  Sum_probs=75.6

Q ss_pred             CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049           1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI   80 (157)
Q Consensus         1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l   80 (157)
                      ++++.++.+|+.   .++|+.|++++|+++++|+.+             ++|+.|++++|.++.++..   .+.|++|++
T Consensus        45 Ls~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~-------------~~L~~L~l~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          45 LNNLGLSSLPEL---PPHLESLVASCNSLTELPELP-------------QSLKSLLVDNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             CTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC-------------TTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             eCCCCCCCCCCC---CCCCCEEECCCCCCcccccch-------------hhhhhhhhhhcccchhhhh---ccccccccc
Confidence            578889999853   468999999999999888653             3567777777777655421   235777777


Q ss_pred             cCCCCCCCChhhhCccccceEEcCCCcccCcch-------------------hhcCcCCCcEEEccCCCCC
Q psy3049          81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY-------------------ELGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~-------------------~~~~~~~L~~l~l~~n~~~  132 (157)
                      ++|.++.+|. ...+++|+++++.++.+...+.                   .+..++.++.+++..|...
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            7777776664 3456777777777765553322                   1344566677777776554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.4e-09  Score=74.69  Aligned_cols=74  Identities=19%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             ccccEEeccCC--CCC--CCChhhhCccccceEEcCCC-ccc-CcchhhcCcCCCcEEEccCC-CCCChhHHhhcCCCCh
Q psy3049          73 INLRTLDISNN--KLR--YLPSEIGDLIYLRELCLNNN-NLR-TLPYELGKLFQIQILGLHGN-PLSKDYMKIYNEPNGT  145 (157)
Q Consensus        73 ~~L~~L~l~~~--~~~--~~~~~~~~~~~l~~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~l  145 (157)
                      +.++.+++.++  .++  .+......+++|++|++++| .++ .....+.++++|++++++++ .+++.....++.++.+
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            45666666553  222  12223345677888888775 355 33455677788888888774 5666655556555554


Q ss_pred             H
Q psy3049         146 Q  146 (157)
Q Consensus       146 ~  146 (157)
                      +
T Consensus       228 ~  228 (284)
T d2astb2         228 K  228 (284)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.67  E-value=1.9e-08  Score=70.45  Aligned_cols=117  Identities=24%  Similarity=0.264  Sum_probs=81.9

Q ss_pred             hhhcccCCCEEEecCCcceecC--ccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCC
Q psy3049          12 DISLLINLRTLDISNNKLRYLP--SEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNK   84 (157)
Q Consensus        12 ~~~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~   84 (157)
                      .+..+..++.|++++|+++.-.  ..+      ...+..++.|+.|++++|.++.     +...+..+++|++|++++|.
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l------~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhhhhcccccccccccccccccch------hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            3566788999999888886411  101      0124466789999999998862     33446678889999999999


Q ss_pred             CCC-----CChhhhC--ccccceEEcCCCcccC-----cchhh-cCcCCCcEEEccCCCCCCh
Q psy3049          85 LRY-----LPSEIGD--LIYLRELCLNNNNLRT-----LPYEL-GKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        85 ~~~-----~~~~~~~--~~~l~~l~l~~n~l~~-----l~~~~-~~~~~L~~l~l~~n~~~~~  134 (157)
                      ++.     +...+..  ...++.|++++|.++.     +...+ .+.+.|+++++++|.+...
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            873     2233433  3578999999998872     33434 3578899999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.2e-08  Score=69.94  Aligned_cols=59  Identities=29%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             ccccccEEeccCC-CCC-CCChhhhCccccceEEcCCC-ccc-CcchhhcCcCCCcEEEccCC
Q psy3049          71 LLINLRTLDISNN-KLR-YLPSEIGDLIYLRELCLNNN-NLR-TLPYELGKLFQIQILGLHGN  129 (157)
Q Consensus        71 ~~~~L~~L~l~~~-~~~-~~~~~~~~~~~l~~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n  129 (157)
                      .+++|++|+++++ .++ .....+..+++|++|++++| .++ .-...++++++|+++++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4567777777775 455 23445666777777777774 454 22234666777777777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2e-10  Score=72.78  Aligned_cols=62  Identities=32%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             ccccccEEeccCCCCCCCC---hhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCC
Q psy3049          71 LLINLRTLDISNNKLRYLP---SEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS  132 (157)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~  132 (157)
                      .++.|++|++++|+++.++   ..+..+++|+.+++++|.+++++.. ..+...++.+++.+|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3445555555555554332   2234445555555555555544431 223334555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.9e-09  Score=74.26  Aligned_cols=109  Identities=23%  Similarity=0.257  Sum_probs=53.5

Q ss_pred             CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC----
Q psy3049          18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL----   88 (157)
Q Consensus        18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----   88 (157)
                      +|+.||++.+++++..  +.      +-+..+++++.+++++|.++.     +...+..+++|+.|++++|.++..    
T Consensus         3 ~l~~ld~~~~~i~~~~--~~------~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR--WA------ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCHHH--HH------HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcCChHH--HH------HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            4556666666665311  00      012234556666666666541     122234455666666666655421    


Q ss_pred             -Chhhh-CccccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCCh
Q psy3049          89 -PSEIG-DLIYLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSKD  134 (157)
Q Consensus        89 -~~~~~-~~~~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~  134 (157)
                       ...+. ...+|+.|++++|+++.     ++..+..+++|+++++++|.+.+.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence             11111 12346666666666652     223345566666666666665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=6.7e-08  Score=67.65  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             cCcccceEecccCCCcc------ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----c
Q psy3049          48 QFTHLTALYMNDNNLTR------LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----L  111 (157)
Q Consensus        48 ~~~~L~~l~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l  111 (157)
                      ..+.++.+++++|.++.      +...+..+++|+.|++++|.++.     +...+..+++|++|++++|.++.     +
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            34556666666666542      11223455666666666666542     23345556666677777666652     1


Q ss_pred             chhhc--CcCCCcEEEccCCCCCCh
Q psy3049         112 PYELG--KLFQIQILGLHGNPLSKD  134 (157)
Q Consensus       112 ~~~~~--~~~~L~~l~l~~n~~~~~  134 (157)
                      ...+.  ..+.++++++++|.+...
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHHhhhccCCCCCEEECCCCcCChH
Confidence            12222  234566777777666544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7.3e-08  Score=69.10  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=16.6

Q ss_pred             ccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCC
Q psy3049          97 YLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus        97 ~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      .|+.|++++|.++.     ++..+...++|++|++++|.+++
T Consensus       370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            34555555554441     22223344455555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.9e-07  Score=58.67  Aligned_cols=79  Identities=24%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             hcCcccceEecccCCCcccc---ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcc--------hh
Q psy3049          47 WQFTHLTALYMNDNNLTRLS---GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLP--------YE  114 (157)
Q Consensus        47 ~~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~--------~~  114 (157)
                      ..++.|++|++++|.++.++   ..+..+++|+.|++++|.++.++. .......++.+++.+|.+....        ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            46789999999999998764   335678999999999999998865 3334567899999999998432        22


Q ss_pred             hcCcCCCcEEE
Q psy3049         115 LGKLFQIQILG  125 (157)
Q Consensus       115 ~~~~~~L~~l~  125 (157)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=1.1e-06  Score=55.28  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             hcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCC
Q psy3049          14 SLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY   87 (157)
Q Consensus        14 ~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~   87 (157)
                      .+.+.|++|+++++ .++.-.  +   ..+-..+...+.++.|++++|.+..     +...+...+.++.|++++|.++.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~--~---~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKER--I---RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHH--H---HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hCCCCCcEEEeCCCCCCCHHH--H---HHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            34688999999874 465210  0   0011234456789999999998872     22334567789999999999872


Q ss_pred             -----CChhhhCccccceEEcCCCcccCc--------chhhcCcCCCcEEEccCCC
Q psy3049          88 -----LPSEIGDLIYLRELCLNNNNLRTL--------PYELGKLFQIQILGLHGNP  130 (157)
Q Consensus        88 -----~~~~~~~~~~l~~l~l~~n~l~~l--------~~~~~~~~~L~~l~l~~n~  130 (157)
                           +...+...+.|++|++.+|.+..+        ...+...++|+.++++.+.
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                 344577778899999998866543        3335567899999997664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=9.2e-06  Score=50.92  Aligned_cols=86  Identities=17%  Similarity=0.094  Sum_probs=65.0

Q ss_pred             cCcccceEecccC-CCcc-----ccccccccccccEEeccCCCCC-----CCChhhhCccccceEEcCCCcccC-----c
Q psy3049          48 QFTHLTALYMNDN-NLTR-----LSGDISLLINLRTLDISNNKLR-----YLPSEIGDLIYLRELCLNNNNLRT-----L  111 (157)
Q Consensus        48 ~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~l~~l~l~~n~l~~-----l  111 (157)
                      ..+.|+.|+++++ .++.     +...+....+++.|++++|.++     .+...+...+.++.|++++|.++.     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3478999999975 4652     2233556778999999999987     233456677899999999999883     3


Q ss_pred             chhhcCcCCCcEEEccCCCCCC
Q psy3049         112 PYELGKLFQIQILGLHGNPLSK  133 (157)
Q Consensus       112 ~~~~~~~~~L~~l~l~~n~~~~  133 (157)
                      ...+...++|++++++.|.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCC
Confidence            3457778899999999886553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.75  E-value=5e-06  Score=52.05  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             hhcccCCCEEEecC-CcceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCC
Q psy3049          13 ISLLINLRTLDISN-NKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLR   86 (157)
Q Consensus        13 ~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~   86 (157)
                      ..+.+.|+.|++++ +.++.-.     +..+...+...++|+.|++++|.++.     +...+....+++.+++.++.++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~-----~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPT-----LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHH-----HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHH-----HHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            35678999999987 4565210     01111234467789999999998872     2234556788999999999886


Q ss_pred             -----CCChhhhCccccceEEc--CCCccc-----CcchhhcCcCCCcEEEccCCCC
Q psy3049          87 -----YLPSEIGDLIYLRELCL--NNNNLR-----TLPYELGKLFQIQILGLHGNPL  131 (157)
Q Consensus        87 -----~~~~~~~~~~~l~~l~l--~~n~l~-----~l~~~~~~~~~L~~l~l~~n~~  131 (157)
                           .+...+...++++.+++  +.|.+.     .+...+...++|+.++++.+..
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                 23455667788887555  456666     2445567889999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=9.6e-05  Score=45.92  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             cCcccceEeccc-CCCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCccc-----Cc
Q psy3049          48 QFTHLTALYMND-NNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLR-----TL  111 (157)
Q Consensus        48 ~~~~L~~l~l~~-~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~-----~l  111 (157)
                      ..+.|+.+++++ +.++.     +...+...++++.|++++|.++.     +...+...+.++.+++.+|.+.     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            457899999997 45652     23345577899999999999872     3345667789999999999887     23


Q ss_pred             chhhcCcCCCcEEEc--cCCCCCChhHHhh
Q psy3049         112 PYELGKLFQIQILGL--HGNPLSKDYMKIY  139 (157)
Q Consensus       112 ~~~~~~~~~L~~l~l--~~n~~~~~~~~~~  139 (157)
                      ...+...++++.+++  +.|.+.+.....+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            455777889987666  4577776544433