Psyllid ID: psy3060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MHLTTENMNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPGLKSYDATPN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccEEEEEEccccccEEEEEEEcccccEEEEccccEEEccccEEccccEEEEEcccccccccccccccccccEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEEEEEEEEEEEcEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHccHHHHHHHcccccEEcccccEEEcccccEEEcccccccccEEEEccccccccEEEEEEEccccccEcEEccEEEEEccEEEccccEEcccccccccccccEEEcccHHHHHEHcccEEEEEEccccccHHHHcHHHHHHHHHHHHHcccEEEEcccccccccEEEEEcccccHHHEEEHccccccccccccccccccccHHHHHEEEEEEHHcHcccccccccccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mhlttenmndnenfISAEVLAERTLDSLlaehpgeltrtgcphvvctvlpthwrsnktlpVAFKVVALGDVMDGTIVTIragndenycgelRNCTAVMKNQVakfndlrfvgrsgreaeaspkdWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLvpivpnhlskidiftggslCGLVLLThfssgarwdsasapsipisnvvHHTVRLFGyhihktkllkspfeksepvklefrdpglksydatpn
Flexible Loop (DISEMBL)
mhlttenmndneNFISAEVLAERTLDSLLAEHPgeltrtgcPHVVCTVLPthwrsnktlPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVgrsgreaeaspkdwvGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTkllkspfeksepvklefrdpglksydatpn
Low Complexity Region (SEG)
MHLTTENMNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPGLKSYDATPN
Disordered region (IsUnstruct)
**************ISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSG******PKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLL***************************
Disordered Region (DISOPRED)
******************VLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEI***************************************************CGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFR************
Disordered Region (DISEMBL)
********NDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPGLKSYDATPN
Disordered Region (DISPRO)
****************AEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFS*********APSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPGLKSY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLTTENMNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPGLKSYDATPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q03347	451	Runt-related transcriptio	yes	N/A	0.358	0.212	0.729	1e-38
Q01196	453	Runt-related transcriptio	yes	N/A	0.358	0.211	0.729	1e-38
Q63046	450	Runt-related transcriptio	yes	N/A	0.358	0.213	0.729	1e-38
Q64131	409	Runt-related transcriptio	no	N/A	0.406	0.266	0.627	1e-37
Q13761	415	Runt-related transcriptio	no	N/A	0.406	0.262	0.618	4e-37
Q13950	521	Runt-related transcriptio	no	N/A	0.350	0.180	0.723	4e-37
Q08775	607	Runt-related transcriptio	no	N/A	0.350	0.154	0.723	6e-37
Q6PF39	462	Runt-related transcriptio	N/A	N/A	0.354	0.205	0.705	9e-37
P22814	510	Segmentation protein Runt	no	N/A	0.347	0.182	0.709	1e-36
Q9W349	826	Protein lozenge OS=Drosop	no	N/A	0.354	0.115	0.715	3e-34

>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 47  GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106

Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. Essential for the development of normal hematopoiesis. Isoform 4 shows higher binding activities for target genes and binds TCR-beta-E2 and RAG-1 target site with threefold higher affinity than other isoforms. It is less effective in the context of neutrophil terminal differentiation. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the BLK promoter. Inhibits KAT6B-dependent transcriptional activation.
Mus musculus (taxid: 10090)

>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1 SV=3

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 47  GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106

Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Isoform AML-1L interferes with the transactivation activity of RUNX1. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the mouse BLK promoter. Inhibits KAT6B-dependent transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1 PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 47  GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106

Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Inhibits KAT6B-dependent transcriptional activation.

Rattus norvegicus (taxid: 10116)

>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2 SV=3

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 89/118 (75%), Gaps = 9/118 (7%)

Query: 8   MNDNENFISAEVLAE---------RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
           M +N   +SA+  A          R++  +LA+H GEL RT  P+ +C+VLP+HWR NKT
Sbjct: 30  MGENSGALSAQATAGPGGRTRPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKT 89

Query: 59  LPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           LPVAFKVVALGDV DGT+VT+ AGNDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 90  LPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 147

Binds to the core site of murine Leukemia virus, the core sequences in the enhancer of the polyomavirus, and also to the enhancers of the T-cell receptor genes. May be involved in the control of cellular proliferation and/or differentiation.

Mus musculus (taxid: 10090)

>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1 SV=2

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 88/118 (74%), Gaps = 9/118 (7%)

Query: 8   MNDNENFISAEVLAE---------RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
           M +N   +SA+             R++  +LA+H GEL RT  P+ +C+VLP+HWR NKT
Sbjct: 29  MGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKT 88

Query: 59  LPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           LPVAFKVVALGDV DGT+VT+ AGNDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 89  LPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 146

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, lck, IL-3 and GM-CSF promoters.

Homo sapiens (taxid: 9606)

>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1 SV=2

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 81/94 (86%)

Query: 23  RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
           RT+  ++A+HP EL RT  P+ +C+VLP+HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 100 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 159

Query: 83  NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 160 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 193

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE) (By similarity). Inhibits KAT6B-dependent transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1 SV=2

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 81/94 (86%)

Query: 23  RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
           RT+  ++A+HP EL RT  P+ +C+VLP+HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 186 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 245

Query: 83  NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 246 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 279

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. Inhibits KAT6B-dependent transcriptional activation (By similarity). In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE).

Mus musculus (taxid: 10090)

>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2 SV=2

 Score =  154 bits (388), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 81/95 (85%)

Query: 22  ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
           +R +  +L++HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALG+V DGT+VT+ A
Sbjct: 48  DRNMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMA 107

Query: 82  GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           GNDENY  ELRN TA MK+QVA+FNDLRFVGRSGR
Sbjct: 108 GNDENYSAELRNATAAMKSQVARFNDLRFVGRSGR 142

Involved in primitive hematopoiesis in the embryo.

Xenopus laevis (taxid: 8355)

>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2 SV=2

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%)

Query: 24  TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 83
           +L  +L E+ GEL +TG P ++C+ LP HWRSNK+LP AFKV+AL DV DGT+V+I+ GN
Sbjct: 106 SLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGN 165

Query: 84  DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           DENYCGELRNCT  MKNQVAKFNDLRFVGRSGR
Sbjct: 166 DENYCGELRNCTTTMKNQVAKFNDLRFVGRSGR 198

Plays a pivotal role in regulating the expression of other pair-rule genes such as eve, ftz, and h.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2

 Score =  145 bits (366), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/95 (71%), Positives = 74/95 (77%)

Query: 22  ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
           ER +     EHPGEL RT  P+ +C+ LP HWRSNKTLP+AFKVVAL +V DGT VTIRA
Sbjct: 273 ERLVQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRA 332

Query: 82  GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           GNDEN C ELRN T  MKN VAKFNDLRFVGRSGR
Sbjct: 333 GNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGR 367

Involved in prepatterning photoreceptor precursors in the developing eye; in the larval eye disk it defines a subset of cells as an equipotential group that is competent to respond to the sevenless developmental signal and another subset that confer proper photoreceptor identity by positively regulating the homeo box gene Bar. Involved in the aop/pnt dynamic in a Ras-dependent manner to regulate pros expression. Promotes apoptosis in the pupal eye by directly activating aos and klu. Also modulates hid-and rpr-mediated cell death. Regulates amos function in olfactory sensilla development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
328713666	194	PREDICTED: protein lozenge-like [Acyrtho	0.429	0.592	0.844	7e-51
91089023	525	PREDICTED: similar to CG15455 CG15455-PA	0.421	0.215	0.814	4e-48
195567885	657	GD17495 [Drosophila simulans] gi|1942048	0.399	0.162	0.822	2e-47
221500120	663	RunxB, isoform A [Drosophila melanogaste	0.399	0.161	0.822	2e-47
195482114	699	GE17890 [Drosophila yakuba] gi|194189441	0.399	0.153	0.822	2e-47
194897264	671	GG19691 [Drosophila erecta] gi|190650271	0.399	0.159	0.822	2e-47
242013873	216	runx1, putative [Pediculus humanus corpo	0.380	0.472	0.862	3e-47
194770329	684	GF15967 [Drosophila ananassae] gi|190614	0.399	0.156	0.822	3e-47
195346011	293	GM23044 [Drosophila sechellia] gi|194134	0.399	0.365	0.822	4e-47
198469482	301	GA13742 [Drosophila pseudoobscura pseudo	0.399	0.355	0.822	4e-47

>gi|328713666|ref|XP_001948981.2| PREDICTED: protein lozenge-like [Acyrthosiphon pisum]

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 106/116 (91%), Gaps = 1/116 (0%)

Query: 1   MHLTTENMNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLP 60
           MHL+ E M + + F+ A+VLAERTLDSLLAEHPGEL RTGCPHVVCTVLPTHWRSNKTLP
Sbjct: 1   MHLS-EPMRNRDGFLKADVLAERTLDSLLAEHPGELVRTGCPHVVCTVLPTHWRSNKTLP 59

Query: 61  VAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           VAFKVVALG+V DGT VTIRAGNDEN+C ELRNCTA+MKNQVAKFNDLRFVGRSGR
Sbjct: 60  VAFKVVALGEVPDGTPVTIRAGNDENFCAELRNCTALMKNQVAKFNDLRFVGRSGR 115

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089023|ref|XP_968913.1| PREDICTED: similar to CG15455 CG15455-PA [Tribolium castaneum] gi|270012808|gb|EFA09256.1| runt-like protein [Tribolium castaneum]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 101/113 (89%)

Query: 4   TTENMNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAF 63
           TT + + +   ++AE+LAERT+D LLAEHPGEL RTG PHVVCTVLP HWRSNKTLPVAF
Sbjct: 48  TTGHYDRSYGNLTAEMLAERTIDGLLAEHPGELVRTGSPHVVCTVLPPHWRSNKTLPVAF 107

Query: 64  KVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           KVVALGDV DGT+VT+RAGNDENYC ELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 108 KVVALGDVGDGTVVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGR 160

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567885|ref|XP_002107488.1| GD17495 [Drosophila simulans] gi|194204896|gb|EDX18472.1| GD17495 [Drosophila simulans]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 95  DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 154

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 155 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 201

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221500120|ref|NP_608399.2| RunxB, isoform A [Drosophila melanogaster] gi|442617081|ref|NP_001259745.1| RunxB, isoform C [Drosophila melanogaster] gi|220901834|gb|AAF50893.2| RunxB, isoform A [Drosophila melanogaster] gi|440216982|gb|AGB95584.1| RunxB, isoform C [Drosophila melanogaster]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 96  DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 155

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 156 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 202

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482114|ref|XP_002101917.1| GE17890 [Drosophila yakuba] gi|194189441|gb|EDX03025.1| GE17890 [Drosophila yakuba]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 101 DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 160

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 161 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 207

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194897264|ref|XP_001978622.1| GG19691 [Drosophila erecta] gi|190650271|gb|EDV47549.1| GG19691 [Drosophila erecta]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 108 DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 167

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 168 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 214

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013873|ref|XP_002427625.1| runx1, putative [Pediculus humanus corporis] gi|212512040|gb|EEB14887.1| runx1, putative [Pediculus humanus corporis]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 97/102 (95%)

Query: 15  ISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDG 74
           ++AE LAERTLD LLAEHPGEL RTG PH+VCT+LP HWRSNKTLPVAFKVVALG+V+DG
Sbjct: 18  LTAEALAERTLDGLLAEHPGELVRTGSPHLVCTMLPPHWRSNKTLPVAFKVVALGEVLDG 77

Query: 75  TIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           T+VT+RAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 78  TLVTVRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 119

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194770329|ref|XP_001967246.1| GF15967 [Drosophila ananassae] gi|190614522|gb|EDV30046.1| GF15967 [Drosophila ananassae]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 111 DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 170

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 171 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 217

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195346011|ref|XP_002039562.1| GM23044 [Drosophila sechellia] gi|194134788|gb|EDW56304.1| GM23044 [Drosophila sechellia]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 81  DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 140

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 141 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 187

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198469482|ref|XP_001355038.2| GA13742 [Drosophila pseudoobscura pseudoobscura] gi|198146891|gb|EAL32094.2| GA13742 [Drosophila pseudoobscura pseudoobscura]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query: 10  DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
           D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct: 108 DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 167

Query: 70  DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 168 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 214

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
FB|FBgn0259162	663	RunxB [Drosophila melanogaster	0.399	0.161	0.822	1.6e-45
FB|FBgn0083981	658	RunxA [Drosophila melanogaster	0.406	0.165	0.761	2.9e-42
MGI|MGI:102672	409	Runx3 "runt related transcript	0.350	0.229	0.734	6.4e-37
UNIPROTKB|Q13761	415	RUNX3 "Runt-related transcript	0.350	0.226	0.734	1.3e-36
RGD|620082	409	Runx3 "runt-related transcript	0.350	0.229	0.734	1.7e-36
UNIPROTKB|E9PU46	409	Runx3 "Protein Runx3" [Rattus	0.350	0.229	0.734	1.7e-36
UNIPROTKB|Q90813	408	Gga.45609 "Ch-runtB2" [Gallus	0.358	0.235	0.739	5.7e-36
UNIPROTKB|E1BAD4	453	RUNX1 "Uncharacterized protein	0.354	0.209	0.736	1.5e-35
UNIPROTKB|E2RJJ8	479	RUNX1 "Uncharacterized protein	0.354	0.198	0.736	1.5e-35
UNIPROTKB|E2RJK5	467	RUNX1 "Uncharacterized protein	0.354	0.203	0.736	1.5e-35

FB|FBgn0259162 RunxB [Drosophila melanogaster (taxid:7227)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/107 (82%), Positives = 97/107 (90%)

Query:    10 DNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG 69
             D   +++ E L ERT+D LLAEHPGEL +TG PHVVCT LPTHWRSNKTLP+AFKV+ALG
Sbjct:    96 DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALG 155

Query:    70 DVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             +VMDGTIVTIRAGNDEN+CGELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct:   156 EVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGR 202

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;IC;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

FB|FBgn0083981 RunxA [Drosophila melanogaster (taxid:7227)]

 Score = 449 (163.1 bits), Expect = 2.9e-42, P = 2.9e-42
 Identities = 83/109 (76%), Positives = 94/109 (86%)

Query:     8 MNDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVA 67
             +N+    +++++LAERTL   L EHPGEL RT  P  VCTVLP HWRSNKTLPVAFKVV+
Sbjct:    83 LNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVVS 142

Query:    68 LGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             LGD+MDGT+VT+RAGNDENYC ELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct:   143 LGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGR 191

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:102672 Runx3 "runt related transcription factor 3" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:    23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
             R++  +LA+H GEL RT  P+ +C+VLP+HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct:    54 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 113

Query:    83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct:   114 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 147

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0002062 "chondrocyte differentiation" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0031069 "hair follicle morphogenesis" evidence=IMP

GO:0031175 "neuron projection development" evidence=IMP

GO:0032609 "interferon-gamma production" evidence=IDA

GO:0042789 "mRNA transcription from RNA polymerase II promoter" evidence=IDA

GO:0045786 "negative regulation of cell cycle" evidence=IMP

GO:0048469 "cell maturation" evidence=IGI

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

UNIPROTKB|Q13761 RUNX3 "Runt-related transcription factor 3" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:    23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
             R++  +LA+H GEL RT  P+ +C+VLP+HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct:    53 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 112

Query:    83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct:   113 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 146

GO:0007411 "axon guidance" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0032609 "interferon-gamma production" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005524 "ATP binding" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0045786 "negative regulation of cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0048935 "peripheral nervous system neuron development" evidence=TAS

RGD|620082 Runx3 "runt-related transcription factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:    23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
             R++  +LA+H GEL RT  P+ +C+VLP+HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct:    54 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 113

Query:    83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct:   114 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 147

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO

GO:0002062 "chondrocyte differentiation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031069 "hair follicle morphogenesis" evidence=ISO

GO:0031175 "neuron projection development" evidence=ISO

GO:0032609 "interferon-gamma production" evidence=ISO

GO:0042789 "mRNA transcription from RNA polymerase II promoter" evidence=ISO

GO:0045786 "negative regulation of cell cycle" evidence=ISO

GO:0048469 "cell maturation" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISO

UNIPROTKB|E9PU46 Runx3 "Protein Runx3" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:    23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
             R++  +LA+H GEL RT  P+ +C+VLP+HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct:    54 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 113

Query:    83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             NDENY  ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct:   114 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 147

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0032609 "interferon-gamma production" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

UNIPROTKB|Q90813 Gga.45609 "Ch-runtB2" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 71/96 (73%), Positives = 83/96 (86%)

Query:    21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
             A+R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ 
Sbjct:    60 ADRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 119

Query:    81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct:   120 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 155

GO:0005524 "ATP binding" evidence=IEA

GO:0000975 "regulatory region DNA binding" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA

UNIPROTKB|E1BAD4 RUNX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query:    22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
             +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct:    48 DRSMVDVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query:    82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             GNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct:   108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0000975 "regulatory region DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RJJ8 RUNX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query:    22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
             +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct:    74 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 133

Query:    82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             GNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct:   134 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 168

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RJK5 RUNX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query:    22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
             +R++  +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct:    62 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 121

Query:    82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             GNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct:   122 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 156

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	268
pfam00853	134	pfam00853, Runt, Runt domain	2e-63

>gnl|CDD|109891 pfam00853, Runt, Runt domain

 Score =  195 bits (496), Expect = 2e-63
 Identities = 76/94 (80%), Positives = 86/94 (91%)

Query: 23  RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
           R++  +LAEHPGEL +TG P+ +C+VLP+HWRSNKTLPVAFKVVALG+V DGT+VTIRAG
Sbjct: 1   RSVVEVLAEHPGELVKTGSPNFLCSVLPSHWRSNKTLPVAFKVVALGEVPDGTMVTIRAG 60

Query: 83  NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           NDENYC ELRN TAVMKNQVAKFNDLRFVGRSGR
Sbjct: 61  NDENYCAELRNATAVMKNQVAKFNDLRFVGRSGR 94

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF00853	135	Runt: Runt domain; InterPro: IPR013524 The AML1 ge	100.0
KOG3982|consensus	475		100.0

>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []

Probab=100.00  E-value=4.3e-73  Score=468.34  Aligned_cols=120  Identities=66%  Similarity=1.003  Sum_probs=105.9

Q ss_pred             hhhhhHHhhcCCCCccccCCCceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEeecCCCccccccccceeeeccc
Q psy3060          22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQ  101 (268)
Q Consensus        22 er~l~~~l~eh~geLV~T~sP~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~AGNDEN~~AELRN~tAvMKNq  101 (268)
                      ||+|.|+|+|||||||+||||+|+||+||+||||||+||.+|||||||+|||||+|||+|||||||||||||++|+||||
T Consensus         1 er~~~~~l~~~~~~lv~T~sP~~lcs~LP~HWR~NKsLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq   80 (135)
T PF00853_consen    1 ERTLHEALAEHPGELVRTDSPNFLCSVLPSHWRSNKSLPVAFKVVALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQ   80 (135)
T ss_dssp             ---HHHHHHHSTCCEEECSSTTEEEES-TSEEETTSS-SS-EEEEESSS-STTEEEEEEEEESSCSSBBEES-EEEEETT
T ss_pred             CccHHHHHHhCCcccccCCCCCEEeecccccccccCCCCCceeEEEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecceeeeeccCCCceeeceEee-------eeeeeEEee----ecCccc
Q psy3060         102 VAKFNDLRFVGRSGREAEASPKDWV-------GTLIWLIGI----KNKHQQ  141 (268)
Q Consensus       102 VArFNDLRFVGRSGRGKsFtlti~v-------~t~~~~i~v----~~~hrq  141 (268)
                      |||||||||||||||||||+|||+|       +||++||||    ||++|.
T Consensus        81 vA~FnDLRFvGRSGRGKsFtltItv~t~PpqvAty~~AIKVTVDGPRePR~  131 (135)
T PF00853_consen   81 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRS  131 (135)
T ss_dssp             EEEESS-EECST-TTTSEEEEEEEE-SSS-EEEEECCEEEEESS-SSCCG-
T ss_pred             cccccccccccccCCccceEEEEEEeCCCchHHhheeeEEEEecCCCCCcc
Confidence            9999999999999999999999996       889999999    555554

The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....

>KOG3982|consensus

Probab=100.00  E-value=5.5e-73  Score=530.35  Aligned_cols=154  Identities=56%  Similarity=0.811  Sum_probs=144.8

Q ss_pred             HHHhhhhhhHHhhcCCCCccccCCCceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEeecCCCccccccccceee
Q psy3060          18 EVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAV   97 (268)
Q Consensus        18 ~~~~er~l~~~l~eh~geLV~T~sP~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~AGNDEN~~AELRN~tAv   97 (268)
                      +.+.||+|+|+|+|||||||+||||+|||++||+|||||||||++|||||||||||||+||||||||||||||||||+|+
T Consensus        94 mt~~~rt~~~~laehpgeLvrT~SPn~lcs~LP~HWRsNKtlp~aFkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~  173 (475)
T KOG3982|consen   94 MTLVFRTVVEFLAEHPGELVRTSSPNFLCSVLPTHWRSNKTLPVAFKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAV  173 (475)
T ss_pred             hhhhHHHHHHHHHhCccceeecCCCceeeecCcchhccCCcccceeEEEEecccCCCcEEEEEecCCcchhHHhhhhHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceeeecceeeeeccCCCceeeceEee-------eeeeeEEee----ecCcc-cchhhh-hhhhhhhhhhhHHHHHhh
Q psy3060          98 MKNQVAKFNDLRFVGRSGREAEASPKDWV-------GTLIWLIGI----KNKHQ-QYEIEI-SFLINQITASISELLRMY  164 (268)
Q Consensus        98 MKNqVArFNDLRFVGRSGRGKsFtlti~v-------~t~~~~i~v----~~~hr-q~~~~~-~~~~~~~s~~lsel~r~~  164 (268)
                      |||||||||||||||||||||||||||+|       +||+++|||    ||+.| +|..+. .....+|.+++++++|+.
T Consensus       174 mknQVAkFNDLRFVGRSGRGKsFtLTIti~TnP~qvATy~kaIKVTVDGPRepRr~K~~~~~k~~~~~~~~r~~~~~~~~  253 (475)
T KOG3982|consen  174 MKNQVAKFNDLRFVGRSGRGKSFTLTITIFTNPPQVATYHKAIKVTVDGPREPRRSKLSDQTKPQAEQFPDRFGDLERLP  253 (475)
T ss_pred             HHhhhhhhccceeecccCCCcceEEEEEEecCCcceeeeeceEEEeccCCCccccccccccccCCccccccccCchhhcC
Confidence            99999999999999999999999999996       889999999    78888 766554 223358999999999999


Q ss_pred             hhhcccc
Q psy3060         165 EKTLRLG  171 (268)
Q Consensus       165 ~~~mr~~  171 (268)
                      ...||++
T Consensus       254 ~~pm~~~  260 (475)
T KOG3982|consen  254 GPPMRVT  260 (475)
T ss_pred             CCCcccC
Confidence            9999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
2j6w_A	140	R164n Mutant Of The Runx1 Runt Domain Length = 140		1e-38
1ean_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		2e-38
1cmo_A	127	Immunoglobulin Motif Dna-Recognition And Heterodime		2e-38
1h9d_A	134	Aml1CBF-BetaDNA COMPLEX Length = 134		1e-37
1ljm_A	131	Dna Recognition Is Mediated By Conformational Trans		2e-37
1eaq_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		2e-37
1io4_C	123	Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN		2e-34
1co1_A	115	Fold Of The Cbfa Length = 115		9e-34

>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain Length = 140

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97

>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97

>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And Heterodimerization For The Pebp2CBF RUNT-Domain Length = 127

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 79/89 (88%)
Query: 28  LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
           +LA+HPGEL RT  P+ +C+VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 3   VLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 62
Query: 88  CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 63  SAELRNATAAMKNQVARFNDLRFVGRSGR 91

>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX Length = 134

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28  LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
           +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 5   VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 64
Query: 88  CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 65  SAELRNATAAMKNQVARFNDLRFVGRSGR 93

>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition And By Dna Bending Length = 131

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28  LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
           +LA+HPGEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 4   VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 63
Query: 88  CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
             ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 64  SAELRNATAAMKNQVARFNDLRFVGRSGR 92

>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 80/96 (83%)
Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R+   +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSXVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVX 61
Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA  KNQVA+FNDLRFVGRSGR
Sbjct: 62  AGNDENYSAELRNATAAXKNQVARFNDLRFVGRSGR 97

>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN- Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP Homodimer Bound To A Dna Fragment From The Csf-1r Promoter Length = 123

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 72/83 (86%)
Query: 34  GELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRN 93
           GEL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY  ELRN
Sbjct: 1   GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 94  CTAVMKNQVAKFNDLRFVGRSGR 116
            TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61  ATAAMKNQVARFNDLRFVGRSGR 83

>pdb|1CO1|A Chain A, Fold Of The Cbfa Length = 115

Iteration: 1
 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 71/82 (86%)
Query: 35  ELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNC 94
           EL RT  P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY  ELRN 
Sbjct: 1   ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 95  TAVMKNQVAKFNDLRFVGRSGR 116
           TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61  TAAMKNQVARFNDLRFVGRSGR 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1eaq_A	140	RUNT-related transcription factor 1; transcription	2e-51

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A Length = 140

 Score =  163 bits (414), Expect = 2e-51
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
            +R++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61

Query: 81  AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           AGNDENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
1eaq_A	140	RUNT-related transcription factor 1; transcription	100.0

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A

Probab=100.00  E-value=8.7e-73  Score=467.17  Aligned_cols=124  Identities=61%  Similarity=0.904  Sum_probs=110.9

Q ss_pred             hhhhhhHHhhcCCCCccccCCCceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEeecCCCccccccccceeeecc
Q psy3060          21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKN  100 (268)
Q Consensus        21 ~er~l~~~l~eh~geLV~T~sP~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~AGNDEN~~AELRN~tAvMKN  100 (268)
                      +||++.|+|+|||||||+||||||+||+||+||||||+||++|||||||+|||||+|||+|||||||||||||++|+|||
T Consensus         2 ~er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mkn   81 (140)
T 1eaq_A            2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKN   81 (140)
T ss_dssp             ---CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEET
T ss_pred             cchhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecceeeeeccCCCceeeceEee-------eeeeeEEee-------ecCcccchh
Q psy3060         101 QVAKFNDLRFVGRSGREAEASPKDWV-------GTLIWLIGI-------KNKHQQYEI  144 (268)
Q Consensus       101 qVArFNDLRFVGRSGRGKsFtlti~v-------~t~~~~i~v-------~~~hrq~~~  144 (268)
                      ||||||||||||||||||||+|||+|       +||++||||       ||+|||+.+
T Consensus        82 qvA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rqk~~  139 (140)
T 1eaq_A           82 QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLD  139 (140)
T ss_dssp             TEEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC-----------
T ss_pred             ccceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCcccccccC
Confidence            99999999999999999999999996       889999999       688888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1eaqa_	124	b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML	7e-60

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  183 bits (467), Expect = 7e-60
 Identities = 69/93 (74%), Positives = 80/93 (86%)

Query: 24  TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 83
           ++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGN 60

Query: 84  DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           DENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGR 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1eaqa_	124	Acute myeloid leukemia 1 protein (AML1), RUNT doma	100.0

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-69  Score=439.79  Aligned_cols=113  Identities=65%  Similarity=0.957  Sum_probs=108.2

Q ss_pred             hhhHHhhcCCCCccccCCCceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEeecCCCccccccccceeeecccee
Q psy3060          24 TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVA  103 (268)
Q Consensus        24 ~l~~~l~eh~geLV~T~sP~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~AGNDEN~~AELRN~tAvMKNqVA  103 (268)
                      +|.|+|+|||||||+|+||+|+||+||+|||||||||.+||||+||+|||||+|||+|||||||||||||++|+||||||
T Consensus         1 ~l~~~l~e~pgelv~t~sP~~lCs~LP~HWRsNKtLp~~Fkvv~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva   80 (124)
T d1eaqa_           1 SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVA   80 (124)
T ss_dssp             CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEE
T ss_pred             CHhHHHHhCCCccccCCCCCEEeecCcchhccCCccCcceEEEEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceeeeeccCCCceeeceEee-------eeeeeEEeee
Q psy3060         104 KFNDLRFVGRSGREAEASPKDWV-------GTLIWLIGIK  136 (268)
Q Consensus       104 rFNDLRFVGRSGRGKsFtlti~v-------~t~~~~i~v~  136 (268)
                      |||||||||||||||||||||+|       +||++||||.
T Consensus        81 ~fndLrFvgRSgrgKsFtLTItv~t~PpqVAty~rAIKVT  120 (124)
T d1eaqa_          81 RFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKIT  120 (124)
T ss_dssp             ECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEE
T ss_pred             cccceEEeccCCCCceEEEEEEEecCCchheeheeeEEEe
Confidence            99999999999999999999997       5667777663