Psyllid ID: psy3067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIPVSSSTHKPGRHHTLDGPNGGGTLS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccccccEEEEEcccccccHHHHHHcccccccccccEEEEccccccccccEEEEEEccHHHHHHHHHHcccccccEEEEEEccHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEcccccccEEEEEcccccccHHHHHHHHccccEccccEEEEEcccccccccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEccHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mghcrtgevsDRYIEVFKVRRQEMDWKLQhtgivegkkddiaQFFDGLEiisngitlvedpfngrptgeAYVQFVDKETAELALQKHKerighryifftghrytvqhraprcetsipvsssthkpgrhhtldgpngggtls
Flexible Loop (DISEMBL)
mghcrtgevsdryIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSipvsssthkpgrhhtldgpngggtls
Low Complexity Region (SEG)
MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIPVSSSTHKPGRHHTLDGPNGGGTLS
Disordered region (IsUnstruct)
********VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRA********************************
Disordered Region (DISOPRED)
*********SDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFF*******************************************
Disordered Region (DISEMBL)
MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCET**************HTLDGPNGGGTLS
Disordered Region (DISPRO)
*G*CRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIPVSSSTHKPGRHHTLDGPNGGGTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
O35737	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.466	1e-21
P31943	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.466	1e-21
Q6AY09	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.459	3e-21
Q5RD26	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.459	3e-21
P55795	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.459	3e-21
Q3SZF3	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.459	3e-21
P70333	449	Heterogeneous nuclear rib	yes	N/A	0.808	0.253	0.459	3e-21
Q60HC3	415	Heterogeneous nuclear rib	N/A	N/A	0.595	0.202	0.539	3e-21
Q794E4	415	Heterogeneous nuclear rib	no	N/A	0.595	0.202	0.539	3e-21
Q9Z2X1	415	Heterogeneous nuclear rib	no	N/A	0.595	0.202	0.539	3e-21

>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Mediates pre-mRNA alternative splicing regulation. Inhibits, together with CUGBP1, insulin receptor (IR) pre-mRNA exon 11 inclusion in myoblast. Binds to the IR RNA. Binds poly(RG).
Mus musculus (taxid: 10090)

>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Mediates pre-mRNA alternative splicing regulation. Inhibits, together with CUGBP1, insulin receptor (IR) pre-mRNA exon 11 inclusion in myoblast. Binds to the IR RNA. Binds poly(RG).

Homo sapiens (taxid: 9606)

>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           +TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMTMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Binds poly(RG).

Rattus norvegicus (taxid: 10116)

>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           +TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Binds poly(RG).

Pongo abelii (taxid: 9601)

>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           +TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Binds poly(RG).

Homo sapiens (taxid: 9606)

>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           +TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Binds poly(RG).

Bos taurus (taxid: 9913)

>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           +TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMTMQRPGPYDRPG 214

This protein is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Binds poly(RG).

Mus musculus (taxid: 10090)

>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
           RYIEVFK  R EMDW L+H+G                      K++I QFF GLEI+ NG
Sbjct: 81  RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ITL  DP  G+ TGEA+VQF  +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Plays a role in the regulation of alternative splicing events. Binds G-rich sequences in pre-mRNAs and keeps target RNA in an unfolded state.

Macaca fascicularis (taxid: 9541)

>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
           RYIEVFK  R EMDW L+H+G                      K++I QFF GLEI+ NG
Sbjct: 81  RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ITL  DP  G+ TGEA+VQF  +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Plays a role in the regulation of alternative splicing events. Binds G-rich sequences in pre-mRNAs and keeps target RNA in an unfolded state.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
           RYIEVFK  R EMDW L+H+G                      K++I QFF GLEI+ NG
Sbjct: 81  RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ITL  DP  G+ TGEA+VQF  +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complexes which provide the substrate for the processing events that pre-mRNAs undergo before becoming functional, translatable mRNAs in the cytoplasm. Plays a role in the regulation of alternative splicing events. Binds G-rich sequences in pre-mRNAs and keeps target RNA in an unfolded state.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
91094511	379	PREDICTED: similar to Heterogeneous nucl	0.617	0.229	0.538	1e-21
307203918	388	Heterogeneous nuclear ribonucleoprotein	0.595	0.216	0.549	2e-20
193643553	518	PREDICTED: heterogeneous nuclear ribonuc	0.617	0.167	0.514	2e-20
47086853	407	heterogeneous nuclear ribonucleoprotein	0.829	0.287	0.462	3e-20
326928641	477	PREDICTED: heterogeneous nuclear ribonuc	0.808	0.238	0.466	5e-20
53127638	492	hypothetical protein RCJMB04_2m14 [Gallu	0.808	0.231	0.466	6e-20
449474971	419	PREDICTED: heterogeneous nuclear ribonuc	0.808	0.272	0.466	6e-20
45383173	519	heterogeneous nuclear ribonucleoprotein	0.808	0.219	0.466	6e-20
327265516	490	PREDICTED: heterogeneous nuclear ribonuc	0.808	0.232	0.466	8e-20
281351805	472	hypothetical protein PANDA_010030 [Ailur	0.808	0.241	0.466	8e-20

>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) [Tribolium castaneum] gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 17/104 (16%)

Query: 9   VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDD----------------IAQFFDGLEIIS 52
           +  RYIEVFKV + EMDW ++ +G   G  DD                IAQFF GLEI+ 
Sbjct: 77  IGSRYIEVFKVNKAEMDWVIKRSGPTYGVNDDGCVRLRGLPFGCSKEEIAQFFTGLEIVP 136

Query: 53  NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           NGITL+ D ++GR +GEAYVQFV+KE AE AL KH+E+IGHRYI
Sbjct: 137 NGITLLTD-YSGRSSGEAYVQFVNKEVAEKALLKHREKIGHRYI 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 69/102 (67%), Gaps = 18/102 (17%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI-VEGKKDD----------------IAQFFDGLEIISNG 54
           RYIEVFK +R EM+W ++ +G+ +E   DD                IAQFF GLEI+ NG
Sbjct: 67  RYIEVFKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNG 126

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           I+L  D + GR TGEAYVQFV+K+ AE ALQKHKE+IGHRYI
Sbjct: 127 ISLPTD-YTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRYI 167

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Acyrthosiphon pisum]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 18/105 (17%)

Query: 9   VSDRYIEVFKVRRQEMDWKLQHTGIV-----------------EGKKDDIAQFFDGLEII 51
           + +RYIEVF+ +R EM+W ++ TG                      KDDI QFF GLE+ 
Sbjct: 125 MGNRYIEVFRSKRSEMEWVIKKTGSTLDSVLDDNCVRLRGLPFGSTKDDIVQFFQGLEMT 184

Query: 52  SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
            +GIT+  D F GR TGEA+VQFVD+E AE ALQKHKE+IGHRYI
Sbjct: 185 PDGITIATD-FTGRSTGEAFVQFVDRENAEKALQKHKEKIGHRYI 228

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio] gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio] gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 83/147 (56%), Gaps = 30/147 (20%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI----VEG-------------KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG      EG              K++I QFF GLEI+ NG
Sbjct: 77  RYVEVFKSNNVEMDWVLKHTGPNCPETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNG 136

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  ++ AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 137 ITLPVD-FQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPR 195

Query: 112 CETSIPVSSSTHKPGRHHTLDGPNGGG 138
               +       +PG +   D P+GGG
Sbjct: 196 KGMGM------QRPGPY---DRPSGGG 213

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Meleagris gallopavo]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 96  RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 155

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 156 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 214

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 215 KLMAMQRPGPYDRPG 229

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 111 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 170

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 171 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 229

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 230 KLMAMQRPGPYDRPG 244

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia guttata]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 62  RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 121

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 122 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 180

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 181 KLLAMQRPGPYDRPG 195

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus] gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus gallus]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 131 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 190

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 191 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 249

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 250 KLMAMQRPGPYDRPG 264

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis carolinensis]

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 111 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 170

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 171 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 229

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 230 KLMAMQRPGPYDRPG 244

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)

Query: 12  RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
           RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct: 81  RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query: 55  ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
           ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+  +  PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199

Query: 112 CETSIPVSSSTHKPG 126
              ++       +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
ZFIN|ZDB-GENE-030131-275	407	hnrnph1l "heterogeneous nuclea	0.836	0.289	0.465	7.5e-22
UNIPROTKB|D6RBM0	212	HNRNPH1 "Heterogeneous nuclear	0.695	0.462	0.516	6.3e-21
ZFIN|ZDB-GENE-060421-3878	396	zgc:136953 "zgc:136953" [Danio	0.702	0.25	0.483	9e-21
UNIPROTKB|I3L816	423	HNRNPH1 "Uncharacterized prote	0.695	0.231	0.516	1.7e-20
UNIPROTKB|E9PCY7	429	HNRNPH1 "Heterogeneous nuclear	0.695	0.228	0.516	1.8e-20
UNIPROTKB|E2R8D6	439	E2R8D6 "Uncharacterized protei	0.695	0.223	0.516	2e-20
UNIPROTKB|E5RGV0	155	HNRNPH1 "Heterogeneous nuclear	0.744	0.677	0.492	2.1e-20
UNIPROTKB|P31943	449	HNRNPH1 "Heterogeneous nuclear	0.695	0.218	0.516	2.2e-20
UNIPROTKB|F2Z5H9	449	HNRNPH1 "Uncharacterized prote	0.695	0.218	0.516	2.2e-20
MGI|MGI:1891925	449	Hnrnph1 "heterogeneous nuclear	0.695	0.218	0.516	2.2e-20

ZFIN|ZDB-GENE-030131-275 hnrnph1l "heterogeneous nuclear ribonucleoprotein H1, like" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 68/146 (46%), Positives = 82/146 (56%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI----VEG-------------KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG      EG              K++I QFF GLEI+ NG
Sbjct:    77 RYVEVFKSNNVEMDWVLKHTGPNCPETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNG 136

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAPRC 112
             ITL  D F GR TGEA+VQF  ++ AE AL+KHKERIGHRYI  F   R  V+ H  P  
Sbjct:   137 ITLPVD-FQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPR 195

Query:   113 ETSIPVSSSTHKPGRHHTLDGPNGGG 138
             +          +PG +   D P+GGG
Sbjct:   196 K-----GMGMQRPGPY---DRPSGGG 213

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|D6RBM0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-060421-3878 zgc:136953 "zgc:136953" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
 Identities = 58/120 (48%), Positives = 71/120 (59%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGIVE--GK---------------KDDIAQFFDGLEIISNG 54
             RYIEVF+  R EMDW L+ +G  +  G                K++I QFF GL+I+ NG
Sbjct:    78 RYIEVFRSNRSEMDWVLKRSGPTDYDGSSGCMLRLRGLPFGCSKEEIVQFFSGLKIVPNG 137

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
             ITL  D + GR TGEA+VQF  KE AE AL KHKERIGHRYI  F   R  ++  +  PR
Sbjct:   138 ITLPMD-YQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEMRAYYEVPR 196

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L816 HNRNPH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    80 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 139

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   140 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 196

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E9PCY7 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|E2R8D6 E2R8D6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E5RGV0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 62/126 (49%), Positives = 72/126 (57%)

Query:     4 CRTGEVSDRYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFD 46
             C   EV  R+  VFK    EMDW L+HTG             + G      K++I QFF 
Sbjct:    22 CSADEVQ-RFFSVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 80

Query:    47 GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTV 105
             GLEI+ NGITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V
Sbjct:    81 GLEIVPNGITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 139

Query:   106 Q-HRAP 110
             + H  P
Sbjct:   140 RTHYDP 145

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P31943 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0008266 "poly(U) RNA binding" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|F2Z5H9 HNRNPH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1891925 Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 61/118 (51%), Positives = 71/118 (60%)

Query:    12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
             RY+EVFK    EMDW L+HTG             + G      K++I QFF GLEI+ NG
Sbjct:    81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140

Query:    55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-HRAP 110
             ITL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI  F   R  V+ H  P
Sbjct:   141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDP 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
cd12504	77	cd12504, RRM2_hnRNPH_like, RNA recognition motif 2	2e-27
cd12732	96	cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in	2e-23
cd12731	83	cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	5e-21
cd12254	73	cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit	3e-19
cd12505	75	cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-	1e-18
cd12508	80	cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif	1e-17
cd12507	75	cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif	5e-16
cd12738	80	cd12738, RRM1_Fusilli, RNA recognition motif 1 in	7e-13
cd12503	77	cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition m	2e-11
cd12737	80	cd12737, RRM1_ESRP2, RNA recognition motif 1 in ep	2e-11
cd12736	85	cd12736, RRM1_ESRP1, RNA recognition motif 1 in ep	9e-11
cd12506	75	cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition m	1e-08
cd12511	73	cd12511, RRM2_RBM12_like, RNA recognition motif 2	2e-08
cd12514	73	cd12514, RRM4_RBM12_like, RNA recognition motif 4	8e-08
cd12729	79	cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	1e-07
cd12741	100	cd12741, RRM2_Fusilli, RNA recognition motif 2 in	1e-07
cd12740	107	cd12740, RRM2_ESRP2, RNA recognition motif 2 in ep	2e-07
cd12509	81	cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif	2e-07
cd12739	109	cd12739, RRM2_ESRP1, RNA recognition motif 2 in ep	3e-07
cd12512	101	cd12512, RRM3_RBM12, RNA recognition motif 3 in RN	4e-07
cd12746	78	cd12746, RRM2_RBM12B, RNA recognition motif 2 in R	9e-07
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	2e-06
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	2e-06
smart00360	73	smart00360, RRM, RNA recognition motif	5e-06
cd12730	79	cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-	6e-06
cd12402	77	cd12402, RRM_eIF4B, RNA recognition motif in eukar	6e-06
cd12502	72	cd12502, RRM2_RMB19, RNA recognition motif 2 in RN	6e-06
cd12735	75	cd12735, RRM3_hnRNPH3, RNA recognition motif 3 in	1e-05
cd12749	88	cd12749, RRM4_RBM12, RNA recognition motif 4 in RN	1e-05
cd12510	74	cd12510, RRM1_RBM12_like, RNA recognition motif 1	6e-05
cd12448	73	cd12448, RRM2_gar2, RNA recognition motif 2 in yea	9e-05
cd12450	77	cd12450, RRM1_NUCLs, RNA recognition motif 1 found	1e-04
cd12742	81	cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif i	2e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-04
cd12391	72	cd12391, RRM1_SART3, RNA recognition motif 1 in sq	3e-04
cd12733	75	cd12733, RRM3_GRSF1, RNA recognition motif 3 in G-	3e-04
cd12550	76	cd12550, RRM_II_PABPN1, RNA recognition motif in t	5e-04
cd12747	75	cd12747, RRM2_RBM12, RNA recognition motif 2 in RN	5e-04
cd12284	73	cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2	5e-04
cd12734	76	cd12734, RRM3_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	6e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	0.001
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	0.004

>gnl|CDD|240948 cd12504, RRM2_hnRNPH_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family

 Score = 96.3 bits (240), Expect = 2e-27
 Identities = 41/59 (69%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          K++IAQFF GLEI+ NGITL  D   GR TGEAYVQF  +E+AE AL KHKE+IGHRYI
Sbjct: 14 KEEIAQFFSGLEIVPNGITLPMDY-RGRSTGEAYVQFASQESAERALGKHKEKIGHRYI 71

This subfamily corresponds to the RRM2 of hnRNP H protein family which includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9). They represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing, having similar RNA binding affinities and specifically recognizing the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 77

>gnl|CDD|241176 cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

 Score = 87.3 bits (216), Expect = 2e-23
 Identities = 47/90 (52%), Positives = 54/90 (60%), Gaps = 18/90 (20%)

Query: 24 MDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNGITLVEDPFNGRP 66
          MDW L+H G  +                   K++I QFF GLEI+ NGITL  D + GR 
Sbjct: 1  MDWVLKHNGPTDYDGSSGGTVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLTMD-YQGRS 59

Query: 67 TGEAYVQFVDKETAELALQKHKERIGHRYI 96
          TGEA+VQF  KE AE AL KHKERIGHRYI
Sbjct: 60 TGEAFVQFASKEIAENALGKHKERIGHRYI 89

This subgroup corresponds to the RRM2 of hnRNP H3 (also termed hnRNP 2H9), a nuclear RNA binding protein that belongs to the hnRNP H protein family that also includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. This family is involved in mRNA processing and exhibit extensive sequence homology. Currently, little is known about the functions of hnRNP H3 except for its role in the splicing arrest induced by heat shock. In addition, the typical hnRNP H proteins contain contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, like other hnRNP H protein family members, hnRNP H3 has an extensive glycine-rich region near the C-terminus, which may allow it to homo- or heterodimerize. . Length = 96

>gnl|CDD|241175 cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

 Score = 80.4 bits (198), Expect = 5e-21
 Identities = 40/59 (67%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          K++I QFF GLEI+ NGITL  D   GR TGEA+VQF  +E AE AL+KHKERIGHRYI
Sbjct: 15 KEEIVQFFSGLEIVPNGITLPVDF-QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 72

This subgroup corresponds to the RRM2 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 83

>gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins

 Score = 75.7 bits (187), Expect = 3e-19
 Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          ++DI  FF GL+I  +GI +V D  +GRPTGEAYV+F   E A  AL+KH  ++G RYI
Sbjct: 13 EEDIRDFFSGLDIPPDGIHIVYDD-DGRPTGEAYVEFASPEDARRALRKHNNKMGGRYI 70

The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|240949 cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 74.0 bits (182), Expect = 1e-18
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          DDI  FF GL+I+ +G+ +V +   GR TGEAYVQF   E A  AL KH+E IG+RYI
Sbjct: 16 DDIIDFFRGLDIVDDGVVIVLN-RRGRKTGEAYVQFATPEMANKALLKHREEIGNRYI 72

This subfamily corresponds to the RRM2 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240952 cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif 2 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 72.0 bits (177), Expect = 1e-17
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 37 KKDDIAQFFDGLEIIS---NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGH 93
             DI  FF GL  +    +GI  V  P +GRPTG+A+V F  +E A+ AL KHKE +G 
Sbjct: 14 TAADILAFFGGLCPVVGGPDGILFVTGP-DGRPTGDAFVLFETEEDAQRALGKHKENLGS 72

Query: 94 RYI 96
          RYI
Sbjct: 73 RYI 75

This subfamily corresponds to the RRM2 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli.Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240951 cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif 1 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 67.5 bits (165), Expect = 5e-16
 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          DIAQFF GL I   G+ L      GR  GEA ++FVD+E  +LALQ+HK  +G RYI
Sbjct: 15 DIAQFFRGLNIAKGGVALCLSA-QGRRNGEALIRFVDQEHRDLALQRHKHHMGTRYI 70

This subfamily corresponds to the RRM1 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 75

>gnl|CDD|241182 cd12738, RRM1_Fusilli, RNA recognition motif 1 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 59.5 bits (144), Expect = 7e-13
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          DIA+FF GL I   G+ L  +P  GR  GEA V+F   E  +LAL++HK  IG RYI
Sbjct: 15 DIAKFFRGLNIAKGGVALCLNP-QGRRNGEALVRFTCTEHRDLALKRHKHHIGQRYI 70

This subgroup corresponds to the RRM1 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240947 cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQFVDKETAELALQKHKERIGHR 94
            +D+  FF    I   G   +   ++  GRP+GEA+++   +E  E AL+KH E +GHR
Sbjct: 12 TAEDVLNFFSDCRI-KGGENGIHFTYSREGRPSGEAFIELESEEDVEKALEKHNEHMGHR 70

Query: 95 YI 96
          YI
Sbjct: 71 YI 72

This subfamily corresponds to the RRM1 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. Members in this family have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. They also include a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. They may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 77

>gnl|CDD|241181 cd12737, RRM1_ESRP2, RNA recognition motif 1 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
          +    DIA+FF GL I   G+ L  +   GR  GEA V+FV+ E  +LALQ+HK  +G R
Sbjct: 10 QSSDQDIARFFKGLNIAKGGVALCLNA-QGRRNGEALVRFVNSEQRDLALQRHKHHMGSR 68

Query: 95 YI 96
          YI
Sbjct: 69 YI 70

This subgroup corresponds to the RRM1 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 80

>gnl|CDD|241180 cd12736, RRM1_ESRP1, RNA recognition motif 1 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score = 54.3 bits (130), Expect = 9e-11
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
          +    DIA+FF GL I   G  L  +   GR  GEA V+FV +E  +LALQ+HK  +G+R
Sbjct: 15 QSSDQDIARFFKGLNIAKGGAALCLNA-QGRRNGEALVRFVSEEHRDLALQRHKHHMGNR 73

Query: 95 YI 96
          YI
Sbjct: 74 YI 75

This subgroup corresponds to the RRM1 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (p120-Catenin) and ENAH (hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 85

>gnl|CDD|240950 cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ++DI +FF  L  ++  + +  +  +GR TGEA V+F   E A  A+ K +E +GHRYI
Sbjct: 13 TENDIFEFFSPLNPVN--VRIEYNA-DGRATGEADVEFATHEDAVAAMSKDREHMGHRYI 69

This subfamily corresponds to the RRM3 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. For instance, members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. The family also includes a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 also contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240955 cd12511, RRM2_RBM12_like, RNA recognition motif 2 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
          + D+ +FF GL++    +  ++   NGR  G A V+F   + A+ AL++H+E +G RYI 
Sbjct: 13 EHDVKEFFHGLDV--EDVIFLKRH-NGRNNGNAIVKFATFQDAKEALKRHRELMGSRYIE 69

This subfamily corresponds to the RRM2 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B shows high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|240958 cd12514, RRM4_RBM12_like, RNA recognition motif 4 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 46.2 bits (110), Expect = 8e-08
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
          K ++  FF G+ I   GI ++ D   G+  GEAYV+FV +E A  A + H++++  R I 
Sbjct: 13 KGEVLAFFAGIAIAEQGIHILYDK-TGKTLGEAYVEFVSEEDAMRAERLHRKKLKGREIL 71

Query: 98 FT 99
            
Sbjct: 72 LR 73

This subfamily corresponds to the RRM4 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|241173 cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 11/82 (13%)

Query: 17 FKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISN--GITLVEDPFNGRPTGEAYVQF 74
          F V+ + + W            D++ +FF   +I +   GI  +     GRP+GEA+V+ 
Sbjct: 2  FVVKVRGLPWSCSV--------DEVQRFFSDCKIANGASGIHFIYTR-EGRPSGEAFVEL 52

Query: 75 VDKETAELALQKHKERIGHRYI 96
            +E  +LAL+K +E +GHRY+
Sbjct: 53 ESEEDVKLALKKDRETMGHRYV 74

This subgroup corresponds to the RRM1 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical. Both of them have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 79

>gnl|CDD|241185 cd12741, RRM2_Fusilli, RNA recognition motif 2 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
                DG E    G+  V+ P +GR TG+A+V F  +E A  AL KH+E IG RYI
Sbjct: 44 PPCHVLDGNE----GVLFVKKP-DGRATGDAFVLFATEEDAPKALGKHRESIGSRYI 95

This subgroup corresponds to the RRM2 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 100

>gnl|CDD|241184 cd12740, RRM2_ESRP2, RNA recognition motif 2 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 52 SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          + G+  V+ P +GRPTG+A+V F  +E A+ AL+KHK  +G RYI
Sbjct: 47 TEGLLFVKYP-DGRPTGDAFVLFACEEYAQNALKKHKGILGKRYI 90

This subgroup corresponds to the RRM2 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 107

>gnl|CDD|240953 cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif 3 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 39 DDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
          +DI  F   L   I   G+ +V +   GRP+G+A++Q +  E A  A  + HK  +G RY
Sbjct: 16 EDILNFLGELARSIAPQGVHMVLNA-QGRPSGDAFIQMLSAEFATRAANELHKHHMGERY 74

Query: 96 I 96
          I
Sbjct: 75 I 75

This subfamily corresponds to the RRM3 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. Fusilli shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 81

>gnl|CDD|241183 cd12739, RRM2_ESRP1, RNA recognition motif 2 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 54 GITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          GI  V  P + RPTG+A+V F  +E A+ AL+KHK+ +G RYI
Sbjct: 49 GILFVTYP-DSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYI 90

This subgroup corresponds to the RRM2 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 109

>gnl|CDD|240956 cd12512, RRM3_RBM12, RNA recognition motif 3 in RNA-binding protein 12 (RBM12) and similar proteins

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
          E +   +  FF  L+I+ + I +   P NG+ TGE +V+F ++   + AL +HK+ +G+R
Sbjct: 20 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNR 78

Query: 95 YI 96
          +I
Sbjct: 79 FI 80

This subfamily corresponds to the RRM3 of RBM12. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. The biological role of RBM12 remains unclear. . Length = 101

>gnl|CDD|241190 cd12746, RRM2_RBM12B, RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          +D++  FF GL++  +G+  +++   G   G + V+F  KE A   L++ ++ +G RYI
Sbjct: 13 EDNVRDFFSGLKV--DGVIFLKNR-RGLNNGNSMVKFATKEDAIEGLKRDRQYMGSRYI 68

This subgroup corresponds to the RRM2 of RBM12B which contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Its biological role remains unclear. . Length = 78

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKER-IGH 93
             ++D+ +FF     +  G+ LV +    RP G A+V+F   E AE AL+K     +  
Sbjct: 9  SVTEEDLREFFSPYGKV-EGVRLVRNK--DRPRGFAFVEFASPEDAEAALKKLNGLVLDG 65

Query: 94 RYI 96
          R +
Sbjct: 66 RTL 68

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
          +++ + F     I N IT++ D F G+P G AY++F+DK + E AL 
Sbjct: 14 EELQEHFKSCGTI-NRITILCDKFTGQPKGFAYIEFLDKSSVENALL 59

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
           ++++ + F     + + + LV D   G+  G A+V+F  +E AE AL+  + + +  R 
Sbjct: 12 TEEELRELFSKFGKVES-VRLVRDKETGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 70

Query: 96 I 96
          +
Sbjct: 71 L 71

Length = 73

>gnl|CDD|241174 cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 16 VFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQ 73
          VF VR + + W            +D+  FFD   I  NG   V    N  G+P G+A ++
Sbjct: 1  VFIVRAKGLPWSC--------TAEDVMNFFDDCRI-RNGENGVHFLLNRDGKPRGDALIE 51

Query: 74 FVDKETAELALQKHKERIGHRYI 96
             +E  + AL++H+  +G RY+
Sbjct: 52 LESEEDVQKALEQHRHYMGQRYV 74

This subgroup corresponds to the RRM1 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 79

>gnl|CDD|240848 cd12402, RRM_eIF4B, RNA recognition motif in eukaryotic translation initiation factor 4B (eIF-4B) and similar proteins

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFN-GRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          +DI +FF GL + S  + L  +P + GR  G  Y +F D+++   AL  + E + +R I
Sbjct: 16 EDIKEFFRGLNVSS--VRLPREPGDPGRLRGFGYAEFEDRDSLLQALSLNDESLKNRRI 72

This subfamily corresponds to the RRM of eIF-4B, a multi-domain RNA-binding protein that has been primarily implicated in promoting the binding of 40S ribosomal subunits to mRNA during translation initiation. It contains two RNA-binding domains; the N-terminal well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), binds the 18S rRNA of the 40S ribosomal subunit and the C-terminal basic domain (BD), including two arginine-rich motifs (ARMs), binds mRNA during initiation, and is primarily responsible for the stimulation of the helicase activity of eIF-4A. eIF-4B also contains a DRYG domain (a region rich in Asp, Arg, Tyr, and Gly amino acids) in the middle, which is responsible for both, self-association of eIF-4B and binding to the p170 subunit of eIF3. Additional research indicates that eIF-4B can interact with the poly(A) binding protein (PABP) in mammalian cells, which can stimulate both, the eIF-4B-mediated activation of the helicase activity of eIF-4A and binding of poly(A) by PABP. eIF-4B has also been shown to interact specifically with the internal ribosome entry sites (IRES) of several picornaviruses which facilitate cap-independent translation initiation. . Length = 77

>gnl|CDD|240946 cd12502, RRM2_RMB19, RNA recognition motif 2 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          K+  I +FF  L+ ++  I +V++  +GR TG A+V    +E  + AL+++K+ +G RYI
Sbjct: 13 KEKHIREFFSPLKPVA--IRIVKND-HGRKTGFAFVDLKSEEDLKKALKRNKDYMGGRYI 69

This subfamily corresponds to the RRM2 of RBM19, also termed RNA-binding domain-1 (RBD-1), a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is also essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|241179 cd12735, RRM3_hnRNPH3, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          + DIA FF  L  I   I +  D   GR TGEA V+FV  E A  A+ K K  + HRYI
Sbjct: 14 ESDIANFFSPLTPIRVHIDIGAD---GRATGEADVEFVTHEDAVAAMSKDKNHMQHRYI 69

This subgroup corresponds to the RRM3 of hnRNP H3 (also termed hnRNP 2H9), a nuclear RNA binding protein that belongs to the hnRNP H protein family that also includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), and hnRNP F. This family is involved in mRNA processing and exhibit extensive sequence homology. Currently, little is known about the functions of hnRNP H3 except for its role in the splicing arrest induced by heat shock. In addition, the typical hnRNP H proteins contain contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, like other hnRNP H protein family members, hnRNP H3 has an extensive glycine-rich region near the C-terminus, which may allow it to homo- or heterodimerize. . Length = 75

>gnl|CDD|241193 cd12749, RRM4_RBM12, RNA recognition motif 4 in RNA-binding protein 12 (RBM12) and similar proteins

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
          K DI QF +G+ +  N + ++ D  NG+  G+A VQF  ++ A  + + H++++  R +F
Sbjct: 13 KKDILQFLEGIGVDENSVQVLVDN-NGQGLGQALVQFKSEDDARKSERLHRKKLNGRDVF 71

This subgroup corresponds to the RRM4 of RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), which is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. The biological role of RBM12 remains unclear. . Length = 88

>gnl|CDD|240954 cd12510, RRM1_RBM12_like, RNA recognition motif 1 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86
          DI +FF GL I   G+ ++     G   GEA++ F   E A LA+ +
Sbjct: 17 DIRRFFSGLTIPDGGVHII-----GGEMGEAFIAFATDEDARLAMSR 58

This subfamily corresponds to the RRM1 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 74

>gnl|CDD|240894 cd12448, RRM2_gar2, RNA recognition motif 2 in yeast protein gar2 and similar proteins

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL 84
          D I + F     IS  + L  DP +GRP G  YV+F  +E A+ AL
Sbjct: 13 DSIYEAFGEYGEIS-SVRLPTDPDSGRPKGFGYVEFSSQEAAQAAL 57

This subfamily corresponds to the RRM2 of yeast protein gar2, a novel nucleolar protein required for 18S rRNA and 40S ribosomal subunit accumulation. It shares similar domain architecture with nucleolin from vertebrates and NSR1 from Saccharomyces cerevisiae. The highly phosphorylated N-terminal domain of gar2 is made up of highly acidic regions separated from each other by basic sequences, and contains multiple phosphorylation sites. The central domain of gar2 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The C-terminal RGG (or GAR) domain of gar2 is rich in glycine, arginine and phenylalanine residues. . Length = 73

>gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 37 KKDDIAQFF-DGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRY 95
          ++DD+ +FF +  E++   + + +D  +GR  G  +V+F  +E A+ AL+K  E +  R 
Sbjct: 12 EQDDLEEFFKECGEVVD--VRIAQD-DDGRSKGFGHVEFATEEGAQKALEKSGEELLGRE 68

Query: 96 IF 97
          I 
Sbjct: 69 IR 70

This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77

>gnl|CDD|241186 cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif in epithelial splicing regulatory protein ESRP1, ESRP2 and similar proteins

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 39 DDIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
          +DI +F      +I  +G+ +V +   GRP+G+A++Q    E A LA QK HK+ +  RY
Sbjct: 16 EDILEFLGEFAADIRPHGVHMVLNQ-QGRPSGDAFIQMKSAERAFLAAQKCHKKMMKDRY 74

Query: 96 I 96
          +
Sbjct: 75 V 75

This subgroup corresponds to the RRM3 of ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYI 96
          ++D+   F     I + I +V D   GR  G A+V+F D+E AE AL+  + + +G R +
Sbjct: 12 EEDLKDLFSKFGPIES-IRIVRD-ETGRSKGFAFVEFEDEEDAEKALEALNGKELGGREL 69

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
          +D++ + F     I++ + LV++ + G+  G AYV+F ++E+ + AL+  +E I  R +F
Sbjct: 13 EDELRKLFSKCGEITD-VRLVKN-YKGKSKGYAYVEFENEESVQEALKLDRELIKGRPMF 70

This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|241177 cd12733, RRM3_GRSF1, RNA recognition motif 3 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           DI  FF  L+       L+E   +GR TGEA V F   + A  A+ K +  + HRYI
Sbjct: 15 QDIVNFFAPLKPTR---ILIEYSSDGRATGEADVHFESHDDAVAAMAKDRAHMQHRYI 69

This subgroup corresponds to the RRM3 of G-rich sequence factor 1 (GRSF-1), a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240994 cd12550, RRM_II_PABPN1, RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL 84
          +++   F G   + N +T++ D F+G P G AY++F DKE+   AL
Sbjct: 14 EELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKESVRTAL 58

This subgroup corresponds to the RRM of PABP-2, also termed poly(A)-binding protein 2, or nuclear poly(A)-binding protein 1 (PABPN1), or poly(A)-binding protein II (PABII), which is a ubiquitously expressed type II nuclear poly(A)-binding protein that directs the elongation of mRNA poly(A) tails during pre-mRNA processing. Although PABP-2 binds poly(A) with high affinity and specificity as type I poly(A)-binding proteins, it contains only one highly conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is responsible for the poly(A) binding. In addition, PABP-2 possesses an acidic N-terminal domain that is essential for the stimulation of PAP, and an arginine-rich C-terminal domain. . Length = 76

>gnl|CDD|241191 cd12747, RRM2_RBM12, RNA recognition motif 2 in RNA-binding protein 12 (RBM12) and similar proteins

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          DI  FF GL I  + I L++D   GR  G A V+F        AL++++  +G RYI
Sbjct: 17 DIRDFFHGLRI--DAIHLLKDHV-GRNNGNALVKFYSPHDTFEALKRNRMLMGQRYI 70

This subgroup corresponds to the RRM2 of RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), which is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. The biological role of RBM12 remains unclear. . Length = 75

>gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86
          H  I E   DD+   F+    I   + L  DP  GR  G  ++QF D E A+ AL++
Sbjct: 7  HFNITE---DDLRGIFEPFGEIEF-VQLQRDPETGRSKGYGFIQFADAEDAKKALEQ 59

This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|241178 cd12734, RRM3_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          ++DI  FF  L  +   I +  D   GR TGEA V+F   E A  A+ K K  + HRY+
Sbjct: 14 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 69

This subgroup corresponds to the RRM3 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F, which represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; bothe have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 76

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 38 KDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
          ++D+ + F    EI S  + +V D  +G+  G A+V+F   E AE AL+  + + +  R 
Sbjct: 12 EEDLRELFSKFGEIES--VRIVRDK-DGKSKGFAFVEFESPEDAEKALEALNGKELDGRK 68

Query: 96 I 96
          +
Sbjct: 69 L 69

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
           ++++ + F     +     +V+D   G   G A+V+F  KE+A+  L+
Sbjct: 13 TEEELKELFSQFGEVKYAR-IVKDKLTGHSKGTAFVKFKTKESAQKCLE 60

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG4211|consensus	510		99.97
KOG1365|consensus	508		99.89
KOG4211|consensus	510		99.87
KOG1365|consensus	508		99.86
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.64
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.62
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.56
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.55
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.54
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.54
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.47
PLN03120	260	nucleic acid binding protein; Provisional	99.45
smart00360	71	RRM RNA recognition motif.	99.43
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.43
PLN03121	243	nucleic acid binding protein; Provisional	99.36
KOG0149|consensus	247		99.36
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.36
smart00362	72	RRM_2 RNA recognition motif.	99.34
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.33
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.33
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.32
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.29
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.28
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.27
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.26
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.24
KOG0125|consensus	376		99.23
KOG0108|consensus	435		99.15
smart00361	70	RRM_1 RNA recognition motif.	99.15
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.1
KOG4207|consensus	256		99.08
KOG0121|consensus	153		99.07
PLN03213	759	repressor of silencing 3; Provisional	99.07
KOG4307|consensus	944		99.06
KOG4205|consensus	311		99.06
KOG0113|consensus	335		99.05
KOG0127|consensus	678		99.04
KOG0126|consensus	219		99.01
KOG4205|consensus	311		98.99
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.97
KOG4307|consensus	944		98.96
KOG0122|consensus	270		98.93
KOG0127|consensus	678		98.89
KOG0145|consensus	360		98.89
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.89
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.86
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.8
KOG0117|consensus	506		98.78
KOG0124|consensus	544		98.78
KOG0130|consensus	170		98.72
KOG0144|consensus	510		98.69
KOG0114|consensus	124		98.69
KOG0147|consensus	549		98.64
KOG0117|consensus	506		98.62
KOG0148|consensus	321		98.62
KOG0107|consensus	195		98.6
KOG0123|consensus	369		98.57
KOG0131|consensus	203		98.56
KOG4212|consensus	608		98.56
KOG0123|consensus	369		98.54
KOG0144|consensus	510		98.52
KOG0533|consensus	243		98.41
KOG4209|consensus	231		98.38
KOG4208|consensus	214		98.37
KOG0110|consensus	725		98.3
KOG0148|consensus	321		98.28
KOG0145|consensus	360		98.27
KOG0131|consensus	203		98.27
KOG0111|consensus	298		98.25
KOG0116|consensus	419		98.22
KOG4212|consensus	608		98.15
KOG1548|consensus	382		98.09
KOG0226|consensus	290		98.08
KOG0109|consensus	346		98.04
KOG0147|consensus	549		98.0
KOG0415|consensus	479		97.86
KOG0146|consensus	371		97.85
KOG0110|consensus	725		97.85
KOG0128|consensus	881		97.83
KOG0105|consensus	241		97.73
KOG0109|consensus	346		97.67
KOG4849|consensus	498		97.66
KOG0124|consensus	544		97.64
KOG1995|consensus	351		97.6
KOG0146|consensus	371		97.57
KOG4210|consensus	285		97.45
KOG0153|consensus	377		97.38
KOG4661|consensus	940		97.19
KOG0132|consensus	894		97.17
KOG4206|consensus	221		96.87
KOG0106|consensus	216		96.81
KOG0128|consensus	881		96.65
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.64
KOG0129|consensus	520		96.56
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	96.53
KOG4454|consensus	267		96.49
KOG0120|consensus	500		96.43
KOG0151|consensus	877		96.11
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	96.01
KOG4660|consensus	549		95.96
KOG1457|consensus	284		95.87
KOG0106|consensus	216		95.48
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	95.25
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	95.2
KOG0120|consensus	500		95.04
KOG0129|consensus	520		94.96
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	94.23
KOG1190|consensus	492		94.02
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	93.81
KOG2314|consensus	698		93.71
KOG2202|consensus	260		93.28
KOG1457|consensus	284		93.24
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	92.73
KOG1548|consensus	382		92.44
KOG1190|consensus	492		91.96
KOG0115|consensus	275		91.86
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.58
KOG4285|consensus	350		86.99
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	86.22
KOG4210|consensus	285		84.0
KOG0105|consensus	241		82.81
KOG1855|consensus	484		81.92
KOG1456|consensus	494		81.44

>KOG4211|consensus

Probab=99.97  E-value=2.7e-31  Score=229.63  Aligned_cols=106  Identities=43%  Similarity=0.700  Sum_probs=101.0

Q ss_pred             CCCcCCCCceeEEEEEecHHHHHHHHH---------------hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcc
Q psy3067           3 HCRTGEVSDRYIEVFKVRRQEMDWKLQ---------------HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPT   67 (141)
Q Consensus         3 ~~~~~~ig~RyIEv~~~~~~d~~~~~~---------------~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~   67 (141)
                      +++|.+||+||||||+++..|+.|+++               |||||+||++||.+||++|.|+.++|.++.| ..||++
T Consensus        67 kkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~t  145 (510)
T KOG4211|consen   67 KKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPT  145 (510)
T ss_pred             HhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcc
Confidence            589999999999999999999999877               5899999999999999999999988999999 899999


Q ss_pred             eeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhcccC
Q psy3067          68 GEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRA  109 (141)
Q Consensus        68 G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~~~~  109 (141)
                      |+|||+|+|++.|++||++|++.|++||||||+|+..|.+++
T Consensus       146 GEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~  187 (510)
T KOG4211|consen  146 GEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRA  187 (510)
T ss_pred             cceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhh
Confidence            999999999999999999999999999999999999887764

>KOG1365|consensus

Probab=99.89  E-value=1e-24  Score=185.35  Aligned_cols=104  Identities=30%  Similarity=0.443  Sum_probs=95.4

Q ss_pred             CCcCCCCceeEEEEEecHHHHHHHHHh-----------------------------------cCCCCCCHHHHHhhcccC
Q psy3067           4 CRTGEVSDRYIEVFKVRRQEMDWKLQH-----------------------------------TGIVEGKKDDIAQFFDGL   48 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~-----------------------------------gLp~s~te~DI~~FFs~~   48 (141)
                      +||+.||+||||||.+|.+|+++++++                                   ||||+++.+||.+||.++
T Consensus       225 khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdF  304 (508)
T KOG1365|consen  225 KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDF  304 (508)
T ss_pred             HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHH
Confidence            689999999999999999999988763                                   899999999999999998


Q ss_pred             --CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchhhccc
Q psy3067          49 --EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYTVQHR  108 (141)
Q Consensus        49 --~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~~~~~  108 (141)
                        .|.-.+||++.+ ..|+++|+|||+|.++|+|..|.++ |+++|..|||||++|+.+|+++
T Consensus       305 a~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~  366 (508)
T KOG1365|consen  305 ATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE  366 (508)
T ss_pred             hhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence              444468999999 9999999999999999999999986 7888899999999999988774

>KOG4211|consensus

Probab=99.87  E-value=1.1e-22  Score=176.46  Aligned_cols=96  Identities=29%  Similarity=0.422  Sum_probs=79.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .|-.|||||+||++||++||++|+|-+  +.+..  .+||++|+|||+|.++|++++||++|+..|++||||||.+..++
T Consensus        12 ~vr~rGLPwsat~~ei~~Ff~~~~I~~--~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e   87 (510)
T KOG4211|consen   12 EVRLRGLPWSATEKEILDFFSNCGIEN--LEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE   87 (510)
T ss_pred             EEEecCCCccccHHHHHHHHhcCceeE--EEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence            344589999999999999999999964  44444  68999999999999999999999999999999999999997655


Q ss_pred             ccc-----CCCC------C--CCCcccCCCCCC
Q psy3067         106 QHR-----APRC------E--TSIPVSSSTHKP  125 (141)
Q Consensus       106 ~~~-----~~~~------~--~~lp~~~~~~~~  125 (141)
                      ...     .++.      |  .||||+|+++.+
T Consensus        88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI  120 (510)
T KOG4211|consen   88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDI  120 (510)
T ss_pred             ccccccCCCCCCCCCCceEEecCCCccCcHHHH
Confidence            332     2222      2  399999998754

>KOG1365|consensus

Probab=99.86  E-value=4.2e-23  Score=175.64  Aligned_cols=103  Identities=30%  Similarity=0.479  Sum_probs=90.3

Q ss_pred             CCCcCCCCceeEEEEEecHHHHHHH--------------------HHhcCCCCCCHHHHHhhccc-CCcc--cccEEEee
Q psy3067           3 HCRTGEVSDRYIEVFKVRRQEMDWK--------------------LQHTGIVEGKKDDIAQFFDG-LEII--SNGITLVE   59 (141)
Q Consensus         3 ~~~~~~ig~RyIEv~~~~~~d~~~~--------------------~~~gLp~s~te~DI~~FFs~-~~iv--~~~I~i~~   59 (141)
                      +|||++||.||||||+.+.+|+..+                    -.|||||+||+.||++||.. |.+.  .++|.++.
T Consensus       120 kRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~  199 (508)
T KOG1365|consen  120 KRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT  199 (508)
T ss_pred             HhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE
Confidence            6899999999999999999997644                    12699999999999999973 3322  25688888


Q ss_pred             cCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067          60 DPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQ  106 (141)
Q Consensus        60 d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~  106 (141)
                      . .+||+||+|||.|+.+++|+.||.||++.||.||||+|.|+..|.
T Consensus       200 r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv  245 (508)
T KOG1365|consen  200 R-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV  245 (508)
T ss_pred             C-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence            7 799999999999999999999999999999999999999987664

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.64  E-value=3.9e-16  Score=101.56  Aligned_cols=68  Identities=22%  Similarity=0.376  Sum_probs=59.8

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEE
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIF   97 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIe   97 (141)
                      +.+|||++++++||++||+.++.+ ..|++..+ .+|+++|+|||+|.|+++|++|++. ++..++||+|+
T Consensus         2 ~i~nlp~~~~~~~l~~~f~~~g~v-~~v~~~~~-~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    2 YISNLPPSTTEEDLRNFFSRFGPV-EKVRLIKN-KDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEESSTTT--HHHHHHHCTTSSBE-EEEEEEES-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEee-eccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            468999999999999999999877 47999999 5599999999999999999999997 45999999985

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.62  E-value=1.2e-15  Score=114.61  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||||++||+||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+..
T Consensus        36 ~lfVgnL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~  113 (144)
T PLN03134         36 KLFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND  113 (144)
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence            467889999999999999999997763 69999998899999999999999999999997 699999999999998865

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.56  E-value=3.3e-15  Score=123.19  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=83.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++||+||+++|+.||.+. +|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+...
T Consensus         5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~-~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~   83 (352)
T TIGR01661         5 NLIVNYLPQTMTQEEIRSLFTSIGEIE-SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS   83 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHccCCEE-EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence            467899999999999999999998774 79999998899999999999999999999997 6999999999999877653


Q ss_pred             hc--ccCCCCCCCCcccCCCCCCC
Q psy3067         105 VQ--HRAPRCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 ~~--~~~~~~~~~lp~~~~~~~~~  126 (141)
                      ..  ....-++.+||.+.+.+.++
T Consensus        84 ~~~~~~~~l~v~~l~~~~~~~~l~  107 (352)
T TIGR01661        84 SDSIKGANLYVSGLPKTMTQHELE  107 (352)
T ss_pred             ccccccceEEECCccccCCHHHHH
Confidence            22  12223367888887765544

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF00076 RRM_1: RNA recognition motif

Probab=99.55  E-value=7.7e-15  Score=94.01  Aligned_cols=68  Identities=25%  Similarity=0.399  Sum_probs=63.1

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF   97 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe   97 (141)
                      +++|||+++|++||+++|+.++.+ ..+.+..+ .+|++.|+|||+|.+.++|++|++ .|+..+++|.|.
T Consensus         2 ~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    2 YVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEESETTTSSHHHHHHHHHTTSTE-EEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             EEcCCCCcCCHHHHHHHHHHhhhc-cccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            568999999999999999999888 47999998 899999999999999999999999 799999999873

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.54  E-value=1.1e-14  Score=120.08  Aligned_cols=79  Identities=11%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++++++|+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|.+|++ +|+..++||.|.|.-.+..
T Consensus       271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~  349 (352)
T TIGR01661       271 CIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK  349 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence            388999999999999999999998774 69999997799999999999999999999998 7999999999999887653


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus       350 ~  350 (352)
T TIGR01661       350 A  350 (352)
T ss_pred             C
Confidence            3

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.54  E-value=5.8e-15  Score=124.93  Aligned_cols=100  Identities=12%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|++++|||++|++||+++|+.++.|. +|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..+.+|.|.|..+...
T Consensus       109 ~LfVgnLp~~~te~~L~~lF~~~G~V~-~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~  187 (346)
T TIGR01659       109 NLIVNYLPQDMTDRELYALFRTIGPIN-TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPG  187 (346)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccc
Confidence            578899999999999999999997663 69999998899999999999999999999997 6999999999999887652


Q ss_pred             hc--ccCCCCCCCCcccCCCCCCC
Q psy3067         105 VQ--HRAPRCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 ~~--~~~~~~~~~lp~~~~~~~~~  126 (141)
                      ..  ....-++.+||.+.+++.|+
T Consensus       188 ~~~~~~~~lfV~nLp~~vtee~L~  211 (346)
T TIGR01659       188 GESIKDTNLYVTNLPRTITDDQLD  211 (346)
T ss_pred             ccccccceeEEeCCCCcccHHHHH
Confidence            22  12223467999888887665

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.47  E-value=4.6e-14  Score=120.65  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=83.2

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ..|+++|||+++|++||++||+.++.|. +|+|+.|+.+|+++|+|||+|.+.++|++||.+++..+.++.|.|..+...
T Consensus        90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~-~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~  168 (457)
T TIGR01622        90 RTVFVLQLALKARERDLYEFFSKVGKVR-DVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE  168 (457)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence            3588899999999999999999998773 799999988999999999999999999999999999999999999876532


Q ss_pred             hcccC----------C----CCCCCCcccCCCCCCC
Q psy3067         105 VQHRA----------P----RCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 ~~~~~----------~----~~~~~lp~~~~~~~~~  126 (141)
                      .....          +    =++.+||.+.+.+.+.
T Consensus       169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~  204 (457)
T TIGR01622       169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELR  204 (457)
T ss_pred             hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHH
Confidence            11110          1    1156888887776654

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.45  E-value=1.4e-13  Score=112.65  Aligned_cols=74  Identities=22%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||||++|++||++||+.||-+. .|.|+.|+   .++|+|||+|.++++|+.||.+|+..|++|.|.|.++..
T Consensus         6 tVfVgNLs~~tTE~dLrefFS~~G~I~-~V~I~~d~---~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120          6 TVKVSNVSLKATERDIKEFFSFSGDIE-YVEMQSEN---ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED   79 (260)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecC---CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence            467899999999999999999998773 69999883   357999999999999999999999999999999999753

>smart00360 RRM RNA recognition motif

Probab=99.43  E-value=5.4e-13  Score=83.20  Aligned_cols=68  Identities=24%  Similarity=0.359  Sum_probs=60.9

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF   98 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV   98 (141)
                      +|||++++++||+++|+.++.+. .+.+..++.+++++|+|||+|.+.++|.+|++ .++..++++.|.|
T Consensus         2 ~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360        2 GNLPPDVTEEELRELFSKFGKIE-SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             CCCCcccCHHHHHHHHHhhCCEe-EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            68999999999999999998663 58888886679999999999999999999998 4778899999876

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.43  E-value=1.4e-13  Score=121.21  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++||+||+++|+.++.| .+|+|+.|+.+++++|+|||+|.+.++|++||+ .|...+.+|.|.|..+..+.
T Consensus         3 l~VgnLp~~vte~~L~~~F~~~G~v-~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~   81 (562)
T TIGR01628         3 LYVGDLDPDVTEAKLYDLFKPFGPV-LSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP   81 (562)
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence            5779999999999999999999876 369999997789999999999999999999997 58888999999998775432


Q ss_pred             cccC----CCCCCCCcccCCCCCCC
Q psy3067         106 QHRA----PRCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~~~~----~~~~~~lp~~~~~~~~~  126 (141)
                      ..+.    .=++.+||.+.+.+.+.
T Consensus        82 ~~~~~~~~~vfV~nLp~~~~~~~L~  106 (562)
T TIGR01628        82 SLRRSGVGNIFVKNLDKSVDNKALF  106 (562)
T ss_pred             cccccCCCceEEcCCCccCCHHHHH
Confidence            2221    12367888776665443

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.36  E-value=9.5e-13  Score=106.79  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||+|++|++||++||+.||-+. .|+|+.|   ++..|+|||+|.++++++.||.+++..|.++.|.|.++..
T Consensus         7 TV~V~NLS~~tTE~dLrefFS~~G~I~-~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~   80 (243)
T PLN03121          7 TAEVTNLSPKATEKDVYDFFSHCGAIE-HVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ   80 (243)
T ss_pred             EEEEecCCCCCCHHHHHHHHHhcCCeE-EEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence            357789999999999999999998774 7999988   5566899999999999999999999999999999998764

>KOG0149|consensus

Probab=99.36  E-value=3e-13  Score=109.17  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      +||++||||.++.++++++|+.+ +|++  +.++.|+.+||++|++||.|.+.|+|.+|.+--...|+||.-.+..++-
T Consensus        14 KifVggL~w~T~~~~l~~yFeqfGeI~e--avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l   90 (247)
T KOG0149|consen   14 KIFVGGLAWETHKETLRRYFEQFGEIVE--AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL   90 (247)
T ss_pred             EEEEcCcccccchHHHHHHHHHhCceEE--EEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence            57889999999999999999999 5665  8888998999999999999999999999999999999999988887764

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.36  E-value=2.4e-12  Score=109.07  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=79.0

Q ss_pred             CcCCCCceeEEEEEecHH--H--HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQ--E--MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA   80 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~--d--~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a   80 (141)
                      +...+..|-|.|-..+..  +  --.|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|++.++|
T Consensus       170 nG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~-~v~i~~d~~tg~~kG~aFV~F~~~e~A  248 (346)
T TIGR01659       170 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV-QKNILRDKLTGTPRGVAFVRFNKREEA  248 (346)
T ss_pred             CCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEE-EEEEeecCCCCccceEEEEEECCHHHH
Confidence            455666677777654331  1  12578899999999999999999997663 599999977999999999999999999


Q ss_pred             HHHHH-HcCCcCCC--eeEEEEecch
Q psy3067          81 ELALQ-KHKERIGH--RYIFFTGHRY  103 (141)
Q Consensus        81 ~~AL~-k~~~~i~~--RyIeV~~ss~  103 (141)
                      ++||+ +|+..+.+  +.|.|..+..
T Consensus       249 ~~Ai~~lng~~~~g~~~~l~V~~a~~  274 (346)
T TIGR01659       249 QEAISALNNVIPEGGSQPLTVRLAEE  274 (346)
T ss_pred             HHHHHHhCCCccCCCceeEEEEECCc
Confidence            99999 58887765  6888887764

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>smart00362 RRM_2 RNA recognition motif

Probab=99.34  E-value=3.2e-12  Score=80.05  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=61.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEE
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFF   98 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV   98 (141)
                      ++.+|||++++++||++||+.++.+. .+.+..+ . |.++|.|||+|.+.++|++|++. ++..++++.|.|
T Consensus         2 v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~-~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362        2 LFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKD-T-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             EEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecC-C-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            45689999999999999999998764 5888887 4 89999999999999999999984 778899999876

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.33  E-value=1.3e-12  Score=117.71  Aligned_cols=99  Identities=25%  Similarity=0.252  Sum_probs=80.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++||||++++++|+++|+.|+.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..|+||.|.|.......
T Consensus       110 LfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p  188 (612)
T TIGR01645       110 VYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP  188 (612)
T ss_pred             EEEcCCCCCCCHHHHHHHHHccCCEE-EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccc
Confidence            46789999999999999999998774 69999998999999999999999999999997 69999999999997543210


Q ss_pred             c---------ccC----CCCCCCCcccCCCCCCC
Q psy3067         106 Q---------HRA----PRCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~---------~~~----~~~~~~lp~~~~~~~~~  126 (141)
                      .         ...    .=++.|||.+.+.+.|.
T Consensus       189 ~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk  222 (612)
T TIGR01645       189 QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIK  222 (612)
T ss_pred             ccccccccccccccccceEEeecCCCCCCHHHHH
Confidence            0         001    11266888887777665

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.33  E-value=3.4e-12  Score=115.00  Aligned_cols=99  Identities=13%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             CCcCCCCceeEEEEEecH---------------HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcce
Q psy3067           4 CRTGEVSDRYIEVFKVRR---------------QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTG   68 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~---------------~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G   68 (141)
                      .|+..|+.|.|.|-....               .....++++|||++++++||+++|+.|+.+. +++|+.|+.+|+++|
T Consensus       169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~-svrl~~D~~tgksKG  247 (612)
T TIGR01645       169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKG  247 (612)
T ss_pred             cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcCC
Confidence            456777788777743221               1123578899999999999999999997773 799999977899999


Q ss_pred             eeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          69 EAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        69 ~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +|||+|.+.++|++|++ +|+..|+||+|.|..+..
T Consensus       248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~  283 (612)
T TIGR01645       248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT  283 (612)
T ss_pred             eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence            99999999999999998 699999999999988753

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.32  E-value=5.8e-12  Score=79.28  Aligned_cols=71  Identities=23%  Similarity=0.378  Sum_probs=62.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEE
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFT   99 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~   99 (141)
                      ++.+|||+.+++++|+++|+.++.+ ..+.+..+ ..++++|.|||+|.+.++|+.|++. ++..++++.|.|.
T Consensus         2 i~i~~l~~~~~~~~i~~~~~~~g~i-~~~~~~~~-~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~   73 (74)
T cd00590           2 LFVGNLPPDVTEEDLRELFSKFGKV-ESVRIVRD-KDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE   73 (74)
T ss_pred             EEEeCCCCccCHHHHHHHHHhcCCE-EEEEEeeC-CCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence            3568999999999999999999765 36899888 5668999999999999999999985 6777999999875

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.29  E-value=5.8e-12  Score=95.42  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss  102 (141)
                      ..++++|||+++|++||.++|+.++.+ ..|++..|+.+|+++|+|||.|.++++|..|++. ++..+.+|.|.|....
T Consensus       116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         116 NTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             ceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            367889999999999999999999887 4799999977999999999999999999999995 7799999999999854

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.28  E-value=3.2e-12  Score=114.62  Aligned_cols=95  Identities=20%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~ss~  103 (141)
                      .++++|||++++|+||+++|+.++.|. +|+|+.| .+|+++|+|||+|.++|+|++||+ +|+..| .+|.|.|..+..
T Consensus        60 ~lFVgnLp~~~tEd~L~~~F~~~G~I~-~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~  137 (578)
T TIGR01648        60 EVFVGKIPRDLYEDELVPLFEKAGPIY-ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD  137 (578)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHhhCCEE-EEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence            578899999999999999999998774 6999999 999999999999999999999998 577666 478777654422


Q ss_pred             hhcccCCCCCCCCcccCCCCCCC
Q psy3067         104 TVQHRAPRCETSIPVSSSTHKPG  126 (141)
Q Consensus       104 ~~~~~~~~~~~~lp~~~~~~~~~  126 (141)
                          ...=++.+||.+.+++.+.
T Consensus       138 ----~~rLFVgNLP~~~TeeeL~  156 (578)
T TIGR01648       138 ----NCRLFVGGIPKNKKREEIL  156 (578)
T ss_pred             ----CceeEeecCCcchhhHHHH
Confidence                1123356788777665543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.27  E-value=8.6e-12  Score=107.86  Aligned_cols=77  Identities=13%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|+++|+++|+.|+.+. .+.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|+++.|.|..+..
T Consensus       297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~  374 (509)
T TIGR01642       297 RIYIGNLPLYLGEDQIKELLESFGDLK-AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV  374 (509)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence            578899999999999999999998774 69999997899999999999999999999997 699999999999988764

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.26  E-value=6.9e-12  Score=110.47  Aligned_cols=77  Identities=16%  Similarity=0.190  Sum_probs=70.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|+++|+++|+.|+.+. +|.++.| .+|+++|+|||.|.+.++|.+|+. .|+..++||.|.|..+...+
T Consensus       288 l~V~nl~~~~~~~~L~~~F~~~G~i~-~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~  365 (562)
T TIGR01628       288 LYVKNLDDTVTDEKLRELFSECGEIT-SAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE  365 (562)
T ss_pred             EEEeCCCCccCHHHHHHHHHhcCCeE-EEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence            56689999999999999999997773 6999999 899999999999999999999998 69999999999999987543

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.24  E-value=1.5e-11  Score=105.18  Aligned_cols=76  Identities=24%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|.+|++ +|+..|++|.|.|..+.
T Consensus       188 ~l~v~nl~~~~te~~l~~~f~~~G~i~-~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~  264 (457)
T TIGR01622       188 KLYVGNLHFNITEQELRQIFEPFGDIE-DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ  264 (457)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence            367889999999999999999998773 69999997788999999999999999999997 69999999999999864

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0125|consensus

Probab=99.23  E-value=1.2e-11  Score=103.98  Aligned_cols=75  Identities=13%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      +.++|+||..-|.|++..|..+|.|- +|.|+++ ++| ++||+||.|++++||++|-+ .|+..+.||.|||..++..
T Consensus        99 LhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar  174 (376)
T KOG0125|consen   99 LHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR  174 (376)
T ss_pred             eEeecCCccccCccHHHHHHhhCcee-eEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence            45679999999999999999998773 7999999 788 89999999999999999998 5999999999999999864

>KOG0108|consensus

Probab=99.15  E-value=5.3e-11  Score=103.72  Aligned_cols=78  Identities=23%  Similarity=0.322  Sum_probs=71.7

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ..++.+|+||+++|++|.+.|++.+.| .++++++|+.+|+++|+||++|.+++++.+|++ .++..+++|.+.|..+..
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v-~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~   97 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPV-LSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN   97 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCcc-ceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence            467889999999999999999999766 369999999999999999999999999999999 599999999999987753

>smart00361 RRM_1 RNA recognition motif

Probab=99.15  E-value=1.6e-10  Score=76.34  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             HHHHHhhcc----cCCcccccEE-EeecCCC--CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067          38 KDDIAQFFD----GLEIISNGIT-LVEDPFN--GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF   98 (141)
Q Consensus        38 e~DI~~FFs----~~~iv~~~I~-i~~d~~~--Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV   98 (141)
                      ++||+++|+    .++.+. .|. ++.|+.+  |+++|+|||.|.+.++|++|++ +|+..+++|.|.+
T Consensus         2 ~~~l~~~~~~~~~~fG~v~-~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVG-KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCee-EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            689999999    887663 575 6777556  9999999999999999999998 6999999999875

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.10  E-value=2.6e-10  Score=102.38  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .|+++||||++|+++|+++|+.|  +-|. .|.++        +|+|||+|++.++|++||+ +|+..|++|.|+|..+.
T Consensus       235 ~LfVgNL~~~~tee~L~~~F~~f~~G~I~-rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak  305 (578)
T TIGR01648       235 ILYVRNLMTTTTEEIIEKSFSEFKPGKVE-RVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK  305 (578)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCCceE-EEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            47889999999999999999999  6553 46554        3599999999999999997 79999999999999886


Q ss_pred             hh
Q psy3067         103 YT  104 (141)
Q Consensus       103 ~~  104 (141)
                      ..
T Consensus       306 p~  307 (578)
T TIGR01648       306 PV  307 (578)
T ss_pred             CC
Confidence            53

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG4207|consensus

Probab=99.08  E-value=4.3e-11  Score=95.81  Aligned_cols=82  Identities=22%  Similarity=0.277  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      -+.|..+.+-||-|.+|.+||+.-|+.|+-| .+|.|+.|+.++.+.|||||.|....||+.||+ +|+..++||.|.|.
T Consensus        10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~v-gDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq   88 (256)
T KOG4207|consen   10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRV-GDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ   88 (256)
T ss_pred             cccceeEEecceeccCCHHHHHHHHHHhCcc-cceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence            3456666778999999999999999999877 479999999999999999999999999999998 69999999999999


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      .|.+
T Consensus        89 ~ary   92 (256)
T KOG4207|consen   89 MARY   92 (256)
T ss_pred             hhhc
Confidence            9875

>KOG0121|consensus

Probab=99.07  E-value=3.1e-10  Score=85.04  Aligned_cols=73  Identities=22%  Similarity=0.258  Sum_probs=67.1

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      +++||+|.+||+.|.+.|+-|+.+. .|.|-.|+.+-.|.|+|||+|-+.++|..||+ .++..|+.|.|.+..-
T Consensus        40 yVgNlSfyttEEqiyELFs~cG~ir-riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D  113 (153)
T KOG0121|consen   40 YVGNLSFYTTEEQIYELFSKCGDIR-RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD  113 (153)
T ss_pred             EEeeeeeeecHHHHHHHHHhccchh-eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence            4579999999999999999998885 69999998888999999999999999999999 5999999999998754

>PLN03213 repressor of silencing 3; Provisional

Probab=99.07  E-value=1.8e-10  Score=101.70  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=66.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCH--HHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDK--ETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~--e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .|+++||+|++|++||++.|+.||-|. +|.|+.  .+|  +|||||+|.++  +++++|+. +|+....||.|.|..+.
T Consensus        12 RIYVGNLSydVTEDDLravFSeFGsVk-dVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK   86 (759)
T PLN03213         12 RLHVGGLGESVGRDDLLKIFSPMGTVD-AVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK   86 (759)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence            678999999999999999999998884 799993  688  89999999988  78999998 79999999999999987


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      +
T Consensus        87 P   87 (759)
T PLN03213         87 E   87 (759)
T ss_pred             H
Confidence            3

>KOG4307|consensus

Probab=99.06  E-value=1.7e-10  Score=104.69  Aligned_cols=74  Identities=24%  Similarity=0.352  Sum_probs=68.7

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhccc
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHR  108 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~~~  108 (141)
                      .||||++...|||+||++|.|.+.+|||+-. +    .|+|||.|+|.|||..||.|++..|.+-.|.++.++..|++.
T Consensus         8 qnLP~tAga~DIR~FFSGL~IPdGgVHIIGG-e----~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSSksEmq~   81 (944)
T KOG4307|consen    8 QNLPMTAGASDIRTFFSGLKIPDGGVHIIGG-E----EGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSSKSEMQS   81 (944)
T ss_pred             cCCcccccchHHHHhhcccccCCCceEEecc-c----ccceEEEecccchhhhhhhhcccceecceEEEEeccHHHHHH
Confidence            4999999999999999999999999999876 3    479999999999999999999999999999999999887654

>KOG4205|consensus

Probab=99.06  E-value=6.4e-11  Score=99.39  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      +++++||+|++|++.|+++|+.++-+. ++.++.|+.+||++|++||.|++++.+.++|....+.|++|.||+.++...+
T Consensus         8 KlfiGgisw~ttee~Lr~yf~~~Gev~-d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~   86 (311)
T KOG4205|consen    8 KLFIGGLSWETTEESLREYFSQFGEVT-DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSRE   86 (311)
T ss_pred             ceeecCcCccccHHHHHHHhcccCcee-eEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcc
Confidence            688999999999999999999996663 5889999999999999999999999999999999999999999999996533


Q ss_pred             -cccCC-------CCCCCCcccCCCCCCC
Q psy3067         106 -QHRAP-------RCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 -~~~~~-------~~~~~lp~~~~~~~~~  126 (141)
                       +....       -++-|||.+.+.+.++
T Consensus        87 ~~~~~~~~~~tkkiFvGG~~~~~~e~~~r  115 (311)
T KOG4205|consen   87 DQTKVGRHLRTKKIFVGGLPPDTTEEDFK  115 (311)
T ss_pred             cccccccccceeEEEecCcCCCCchHHHh
Confidence             22211       2255899888887766

>KOG0113|consensus

Probab=99.05  E-value=3.1e-10  Score=94.53  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=82.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~~  105 (141)
                      +|+.-|+|+++|.+|+.-|+-|+.++ .|+||.|+.+|+++|+|||+|+++.+...|-+. ++..|++|.|-|.--....
T Consensus       104 LFv~RLnydT~EskLrreF~~YG~Ik-rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRT  182 (335)
T KOG0113|consen  104 LFVARLNYDTSESKLRREFEKYGPIK-RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRT  182 (335)
T ss_pred             eeeeeccccccHHHHHHHHHhcCcce-eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence            46678999999999999999998885 799999999999999999999999999999995 8999999999887654322


Q ss_pred             ccc-CC-CCCC---CCcccCCCC-CCCCCCCCCCCCCCCC
Q psy3067         106 QHR-AP-RCET---SIPVSSSTH-KPGRHHTLDGPNGGGT  139 (141)
Q Consensus       106 ~~~-~~-~~~~---~lp~~~~~~-~~~~~~~~~~~~~~~~  139 (141)
                      +.. -+ ++.-   |--+.+.+. .+.+..|+-+|.++|.
T Consensus       183 vkgW~PRRLGGGLGg~r~~~~~~~~~~R~R~~~s~~~gg~  222 (335)
T KOG0113|consen  183 VKGWLPRRLGGGLGGRRYESRQLRFGGRERPFRSPLNGGE  222 (335)
T ss_pred             ccccccccccCCcCCccccccccccccccccccCCCCCCc
Confidence            211 11 1111   112222222 2336777778877764

>KOG0127|consensus

Probab=99.04  E-value=2.1e-10  Score=101.80  Aligned_cols=77  Identities=23%  Similarity=0.259  Sum_probs=69.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .+|+|||||+|.+.||...|+.+|-| -.|.|+.. ..|+-.|||||+|....+|.+||+ .|...|+||+|-|.-+-..
T Consensus       119 rLIIRNLPf~~k~~dLk~vFs~~G~V-~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K  196 (678)
T KOG0127|consen  119 RLIIRNLPFKCKKPDLKNVFSNFGKV-VEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK  196 (678)
T ss_pred             eEEeecCCcccCcHHHHHHHhhcceE-EEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence            46889999999999999999999766 35999977 789999999999999999999999 5999999999999877543

>KOG0126|consensus

Probab=99.01  E-value=2.1e-11  Score=95.88  Aligned_cols=76  Identities=22%  Similarity=0.210  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ||+++||||..||.||.--||.+|.+ .+|.++.|+.||+++||||..++++..-..|+. .|+-.|.+|.|.|.-+.
T Consensus        37 ~Iyiggl~~~LtEgDil~VFSqyGe~-vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   37 YIYIGGLPYELTEGDILCVFSQYGEI-VDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             EEEECCCcccccCCcEEEEeeccCce-EEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            67889999999999999999999644 359999999999999999999999999999998 79999999999998775

>KOG4205|consensus

Probab=98.99  E-value=1.8e-10  Score=96.72  Aligned_cols=102  Identities=13%  Similarity=0.190  Sum_probs=90.5

Q ss_pred             CCcCCCCceeEEEEEecHHHH----------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEE
Q psy3067           4 CRTGEVSDRYIEVFKVRRQEM----------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQ   73 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~~d~----------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~   73 (141)
                      ...|.|..|-||+.++..++.          .+++++|||.+++++|++++|..++.+. .+.+++|+.+.+++|++||.
T Consensus        67 ~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~-~~~~~~d~~~~~~rgFgfv~  145 (311)
T KOG4205|consen   67 ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA-DVVIMYDKTTSRPRGFGFVT  145 (311)
T ss_pred             ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE-eeEEeecccccccccceeeE
Confidence            346789999999999966552          2567899999999999999999999774 68999998999999999999


Q ss_pred             eCCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067          74 FVDKETAELALQKHKERIGHRYIFFTGHRYTVQ  106 (141)
Q Consensus        74 F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~  106 (141)
                      |.+++++.+++.++-+.+.++.+||..+-+.+.
T Consensus       146 ~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~  178 (311)
T KOG4205|consen  146 FDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEV  178 (311)
T ss_pred             eccccccceecccceeeecCceeeEeeccchhh
Confidence            999999999999999999999999999977553

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.97  E-value=1e-09  Score=95.90  Aligned_cols=71  Identities=15%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss~  103 (141)
                      |+++||||++|++||+++|+.+|.|. .|.++.+      +|+|||+|.+.++|++|++.   +...|+||.|.|..+..
T Consensus         5 v~V~nLp~~~te~~L~~~f~~fG~V~-~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~   77 (481)
T TIGR01649         5 VHVRNLPQDVVEADLVEALIPFGPVS-YVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS   77 (481)
T ss_pred             EEEcCCCCCCCHHHHHHHHHhcCCee-EEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence            46789999999999999999998874 6877754      37999999999999999983   67899999999998764


Q ss_pred             h
Q psy3067         104 T  104 (141)
Q Consensus       104 ~  104 (141)
                      .
T Consensus        78 ~   78 (481)
T TIGR01649        78 Q   78 (481)
T ss_pred             c
Confidence            3

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG4307|consensus

Probab=98.96  E-value=1.5e-09  Score=98.63  Aligned_cols=70  Identities=27%  Similarity=0.351  Sum_probs=66.1

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      +|.||+++-+||.+||++|.+..++|++-++ ..|.+||+|-|.|+|+++|..|.. ++++.|.+|.|.|..
T Consensus       873 ~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i  943 (944)
T KOG4307|consen  873 NNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI  943 (944)
T ss_pred             cCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence            5899999999999999999999999999999 999999999999999999999987 899999999998753

>KOG0122|consensus

Probab=98.93  E-value=1.5e-09  Score=88.49  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      ..|...+-+.|||-+++|+||.+.|..++.+. .|.|..|+.+|.++|||||.|.+.++|++|+. +|+.-+++=-+.|.
T Consensus       186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~-rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE  264 (270)
T KOG0122|consen  186 RDDEATVRVTNLSEDMREDDLEELFRPFGPIT-RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE  264 (270)
T ss_pred             CCccceeEEecCccccChhHHHHHhhccCccc-eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence            34665677789999999999999999998774 79999999999999999999999999999998 58877776666655


Q ss_pred             ecc
Q psy3067         100 GHR  102 (141)
Q Consensus       100 ~ss  102 (141)
                      -+.
T Consensus       265 wsk  267 (270)
T KOG0122|consen  265 WSK  267 (270)
T ss_pred             ecC
Confidence            444

>KOG0127|consensus

Probab=98.89  E-value=1.8e-09  Score=96.01  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHc------C-CcCCCeeEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKH------K-ERIGHRYIFF   98 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~------~-~~i~~RyIeV   98 (141)
                      -+|+|||||++||++|.+-|+.||.++ .+.|+.|+.+|++.|.|||.|.++.+++.+|+.-      + -.|+||.+.|
T Consensus       294 tVFvRNL~fD~tEEel~~~fskFG~v~-ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv  372 (678)
T KOG0127|consen  294 TVFVRNLPFDTTEEELKEHFSKFGEVK-YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV  372 (678)
T ss_pred             eEEEecCCccccHHHHHHHHHhhccce-eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence            578899999999999999999999885 7999999999999999999999999999999853      3 4689999999


Q ss_pred             Eecc
Q psy3067          99 TGHR  102 (141)
Q Consensus        99 ~~ss  102 (141)
                      .++-
T Consensus       373 ~~Av  376 (678)
T KOG0127|consen  373 TLAV  376 (678)
T ss_pred             eecc
Confidence            9884

>KOG0145|consensus

Probab=98.89  E-value=1.2e-09  Score=90.33  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=86.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++.=||.+-|+++++..|+.++-+ +++.++.|+.+|++.|++||-+..++||++|+. .|+-.+..+.|.|.-+++.
T Consensus        43 NLIvNYLPQ~MTqdE~rSLF~SiGei-EScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS  121 (360)
T KOG0145|consen   43 NLIVNYLPQNMTQDELRSLFGSIGEI-ESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS  121 (360)
T ss_pred             eeeeeecccccCHHHHHHHhhcccce-eeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence            45555689999999999999999877 489999999999999999999999999999998 6999999999999988762


Q ss_pred             -hc-ccCCCCCCCCcccCCCCCCC
Q psy3067         105 -VQ-HRAPRCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 -~~-~~~~~~~~~lp~~~~~~~~~  126 (141)
                       +. +-+.-++.|||-+.++.+++
T Consensus       122 s~~Ik~aNLYvSGlPktMtqkelE  145 (360)
T KOG0145|consen  122 SDSIKDANLYVSGLPKTMTQKELE  145 (360)
T ss_pred             hhhhcccceEEecCCccchHHHHH
Confidence             33 33455589999998888776

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.89  E-value=9.9e-10  Score=95.06  Aligned_cols=76  Identities=13%  Similarity=0.079  Sum_probs=57.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC----Cccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL----EIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~----~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~  100 (141)
                      .|+++|||+++|+++|.+||+.+    +... ..+..+.+...++.+|+|||+|.+.++|++||++++..+.|+.|.|..
T Consensus       177 ~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r  256 (509)
T TIGR01642       177 RLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRR  256 (509)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecC
Confidence            46789999999999999999974    1000 001111111235667999999999999999999999999999999864


Q ss_pred             c
Q psy3067         101 H  101 (141)
Q Consensus       101 s  101 (141)
                      .
T Consensus       257 ~  257 (509)
T TIGR01642       257 P  257 (509)
T ss_pred             c
Confidence            3

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.86  E-value=4.4e-09  Score=91.96  Aligned_cols=72  Identities=11%  Similarity=0.066  Sum_probs=63.7

Q ss_pred             HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+ .+|+++|++.|+.||-|. .|.|+.+ .    +|+|||+|.+.++|++||+ +|+..|.||.|.|..+..
T Consensus       277 ~l~v~nL~~~~vt~~~L~~lF~~yG~V~-~vki~~~-~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~  350 (481)
T TIGR01649       277 VLMVSGLHQEKVNCDRLFNLFCVYGNVE-RVKFMKN-K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ  350 (481)
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHhcCCeE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence            467789998 699999999999997773 6999887 2    5899999999999999998 799999999999988754

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF13893 RRM_5: RNA recognition motif

Probab=98.80  E-value=2.1e-08  Score=62.93  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=46.0

Q ss_pred             HHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          41 IAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        41 I~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      |.+.|+.+|.+. .|.+..+ .    +|.|||+|.+.++|++|++ .|+..++||.|.|.-|
T Consensus         1 L~~~f~~fG~V~-~i~~~~~-~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVK-KIKIFKK-K----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EE-EEEEETT-S----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            578999998773 5777655 2    6899999999999999998 6999999999998754

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0117|consensus

Probab=98.78  E-value=9.7e-09  Score=89.44  Aligned_cols=74  Identities=23%  Similarity=0.320  Sum_probs=64.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~s  101 (141)
                      ||+++||-++.|+||+.+|+..+-+= .++|++|+.+|..+|+|||.|.+.++|++|++ .|...| -||.|.|..|
T Consensus        86 VfvGkIPrD~~EdeLvplfEkiG~I~-elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S  161 (506)
T KOG0117|consen   86 VFVGKIPRDVFEDELVPLFEKIGKIY-ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS  161 (506)
T ss_pred             EEecCCCccccchhhHHHHHhcccee-eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence            46678999999999999999996552 59999999999999999999999999999998 576655 5788877654

>KOG0124|consensus

Probab=98.78  E-value=4.3e-09  Score=90.33  Aligned_cols=74  Identities=28%  Similarity=0.360  Sum_probs=68.7

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +++.+.|...|+-||.-|.++++++ +|.+.-|+.+|+.+|||||+++-+|.|+.||+ +|++.||||.|.|-..+
T Consensus       117 YVGSIsfEl~EDtiR~AF~PFGPIK-SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs  191 (544)
T KOG0124|consen  117 YVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  191 (544)
T ss_pred             eeeeeEEEechHHHHhhccCCCCcc-eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence            4467999999999999999999995 89999999999999999999999999999998 69999999999998654

>KOG0130|consensus

Probab=98.72  E-value=9.4e-09  Score=77.89  Aligned_cols=74  Identities=19%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      |+.|+.-.+||+||.+-|.+|+.++ .||+-.|+.+|-.+|+|.|++++.++|++|+. +|+..|-+..|+|.-|=
T Consensus        76 ~VtgvHeEatEedi~d~F~dyGeiK-NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F  150 (170)
T KOG0130|consen   76 FVTGVHEEATEEDIHDKFADYGEIK-NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF  150 (170)
T ss_pred             EEeccCcchhHHHHHHHHhhccccc-ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence            5578899999999999999998885 69999999999999999999999999999998 69999999999998773

>KOG0144|consensus

Probab=98.69  E-value=3e-08  Score=86.21  Aligned_cols=81  Identities=15%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC-cC--CCeeEE
Q psy3067          22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE-RI--GHRYIF   97 (141)
Q Consensus        22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~-~i--~~RyIe   97 (141)
                      .|..++|++-+|-++||.||++.|+.++.| ..|.|++|+.+|.++|.|||.|.+.++|.+|+. .|.. .+  .+-+|.
T Consensus        32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V-~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq  110 (510)
T KOG0144|consen   32 GSAVKLFVGQIPRTASEKDLRELFEKYGNV-YEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ  110 (510)
T ss_pred             chhhhheeccCCccccHHHHHHHHHHhCce-eEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence            445688999999999999999999999888 479999999999999999999999999999997 5544 44  356888


Q ss_pred             EEecch
Q psy3067          98 FTGHRY  103 (141)
Q Consensus        98 V~~ss~  103 (141)
                      |..+..
T Consensus       111 vk~Ad~  116 (510)
T KOG0144|consen  111 VKYADG  116 (510)
T ss_pred             ecccch
Confidence            888865

>KOG0114|consensus

Probab=98.69  E-value=4.6e-08  Score=71.16  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++||||++|.+++.+.|..++.+- .|+|--+   -..+|.|||.+++..+|++|+. +++..+.+||+-|.-...
T Consensus        21 LyirNLp~~ITseemydlFGkyg~Ir-QIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~   94 (124)
T KOG0114|consen   21 LYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP   94 (124)
T ss_pred             EEEecCCccccHHHHHHHhhcccceE-EEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence            46799999999999999999997763 5887655   3457999999999999999999 599999999999887654

>KOG0147|consensus

Probab=98.64  E-value=6e-08  Score=85.97  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +++++|+|+.||++++.-|++++-+. -|.+.+|..+|+.+||+|++|.+.++|++|+. .|+-.|-||.|.|...+.
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie-~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~  357 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIE-NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE  357 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccce-eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence            56789999999999999999998774 69999995599999999999999999999986 699999999999877654

>KOG0117|consensus

Probab=98.62  E-value=5e-08  Score=85.06  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      +++|||+-++||+-|.+.|+.++-|. .|..+.|        +|||.|.+.++|-+||+ .|+..|+|-.|||..+.+..
T Consensus       262 LYVRNL~~~tTeE~lk~~F~~~G~ve-RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~  332 (506)
T KOG0117|consen  262 LYVRNLMESTTEETLKKLFNEFGKVE-RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD  332 (506)
T ss_pred             eeeeccchhhhHHHHHHHHHhccceE-Eeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence            46799999999999999999998774 6777777        99999999999999998 69999999999999998754


Q ss_pred             c
Q psy3067         106 Q  106 (141)
Q Consensus       106 ~  106 (141)
                      +
T Consensus       333 k  333 (506)
T KOG0117|consen  333 K  333 (506)
T ss_pred             h
Confidence            3

>KOG0148|consensus

Probab=98.62  E-value=5e-08  Score=80.80  Aligned_cols=75  Identities=23%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +.+-|.-.++-++|++-|.+++-|. +.++++|..++|++|++||.|-+.++|+.|++ ++++-||.|.|.-.=+++
T Consensus        66 fvgdls~eI~~e~lr~aF~pFGevS-~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR  141 (321)
T KOG0148|consen   66 FVGDLSPEIDNEKLREAFAPFGEVS-DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR  141 (321)
T ss_pred             EehhcchhcchHHHHHHhccccccc-cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence            4445677789999999999997774 69999999999999999999999999999998 799999999998766654

>KOG0107|consensus

Probab=98.60  E-value=5e-08  Score=76.33  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +|+++||+..+++.||-.-|+-++.+. +|-|...     |-|||||+|+++.||..|+. +|+..|-+..|.|..++-
T Consensus        12 kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G   84 (195)
T KOG0107|consen   12 KVYVGNLGSRATKRELERAFSKYGPLR-SVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG   84 (195)
T ss_pred             eEEeccCCCCcchHHHHHHHHhcCcce-eEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence            567899999999999999999999884 5666554     77999999999999999998 799999999999998875

>KOG0123|consensus

Probab=98.57  E-value=1.4e-07  Score=80.92  Aligned_cols=90  Identities=17%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             CCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-
Q psy3067           8 EVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-   85 (141)
Q Consensus         8 ~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-   85 (141)
                      .+..+-|.|..+.+..- .++..||+-+++.++|.++|+.+ +|+  ++.+..| .+| ++|+ ||+|+++++|++|++ 
T Consensus        61 ~~~~~~~rim~s~rd~~-~~~i~nl~~~~~~~~~~d~f~~~g~il--S~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~  134 (369)
T KOG0123|consen   61 VLKGKPIRIMWSQRDPS-LVFIKNLDESIDNKSLYDTFSEFGNIL--SCKVATD-ENG-SKGY-FVQFESEESAKKAIEK  134 (369)
T ss_pred             ccCCcEEEeehhccCCc-eeeecCCCcccCcHHHHHHHHhhcCee--EEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHH
Confidence            45556667766655443 38889999999999999999999 566  4999999 899 9999 999999999999999 


Q ss_pred             HcCCcCCCeeEEEEecch
Q psy3067          86 KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        86 k~~~~i~~RyIeV~~ss~  103 (141)
                      +|+..+.+..|.|-+.-.
T Consensus       135 ~ng~ll~~kki~vg~~~~  152 (369)
T KOG0123|consen  135 LNGMLLNGKKIYVGLFER  152 (369)
T ss_pred             hcCcccCCCeeEEeeccc
Confidence            599999999998877654

>KOG0131|consensus

Probab=98.56  E-value=2.1e-08  Score=78.86  Aligned_cols=81  Identities=12%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      ++|+ .++.+||+-.+|++-|.+.|-.++.| -+|+|+.|+.+.+..|+|||+|.++|+|+-|++ ++.-.|=||+|.|.
T Consensus         7 nqd~-tiyvgnld~kvs~~~l~EL~iqagpV-v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~   84 (203)
T KOG0131|consen    7 NQDA-TLYVGNLDEKVSEELLYELFIQAGPV-VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN   84 (203)
T ss_pred             CCCc-eEEEecCCHHHHHHHHHHHHHhcCce-eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence            3455 67889999999999999999999766 369999999999999999999999999999999 68889999999999


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      .++.
T Consensus        85 kas~   88 (203)
T KOG0131|consen   85 KASA   88 (203)
T ss_pred             eccc
Confidence            9983

>KOG4212|consensus

Probab=98.56  E-value=6.8e-08  Score=84.45  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +|+.|+||+...+|+++.|... +-| .-|.+++| .+||++|.|-|+|+++|.+++|++ +++..+.+|.|-|....-
T Consensus        47 vfItNIpyd~rWqdLKdLvrekvGev-~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d  123 (608)
T KOG4212|consen   47 VFITNIPYDYRWQDLKDLVREKVGEV-EYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD  123 (608)
T ss_pred             EEEecCcchhhhHhHHHHHHHhcCce-Eeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence            6778999999999999999987 555 36999999 999999999999999999999999 599999999999887643

>KOG0123|consensus

Probab=98.54  E-value=2.1e-07  Score=79.81  Aligned_cols=66  Identities=20%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          34 VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++||.+|.++|++.+.+ .+|+++.| . + +.|+|||.|.++++|++||+ +|...+.|+.|.|..+.+
T Consensus         8 ~~v~e~~l~~~f~~~~~v-~s~rvc~d-~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r   74 (369)
T KOG0123|consen    8 PDVTEAMLFDKFSPAGPV-LSIRVCRD-A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR   74 (369)
T ss_pred             CcCChHHHHHHhcccCCc-eeEEEeec-C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence            789999999999999777 37999999 6 6 99999999999999999998 699999999999997755

>KOG0144|consensus

Probab=98.52  E-value=8.9e-08  Score=83.35  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC-CcCCCe--eEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK-ERIGHR--YIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~-~~i~~R--yIeV~~s  101 (141)
                      ++|++-|+..+||.||++.|+.|+.++ ++.|+.| ..|.++|.|||.|.+.|.|..|++ +|+ +.|.|-  ++-|..+
T Consensus       126 KLFvg~lsK~~te~evr~iFs~fG~Ie-d~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA  203 (510)
T KOG0144|consen  126 KLFVGMLSKQCTENEVREIFSRFGHIE-DCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA  203 (510)
T ss_pred             hhhhhhccccccHHHHHHHHHhhCccc-hhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence            678899999999999999999999995 7999999 899999999999999999999998 565 577765  6666666


Q ss_pred             c
Q psy3067         102 R  102 (141)
Q Consensus       102 s  102 (141)
                      .
T Consensus       204 D  204 (510)
T KOG0144|consen  204 D  204 (510)
T ss_pred             c
Confidence            4

>KOG0533|consensus

Probab=98.41  E-value=1.5e-06  Score=70.96  Aligned_cols=78  Identities=18%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~  104 (141)
                      .+.+.|||+.++++||+++|..++.+ ..+.+-+| ..|++.|.|-|.|...+||.+|+++ ++-.++++.|.+......
T Consensus        85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~-~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~  162 (243)
T KOG0533|consen   85 KVNVSNLPYGVIDADLKELFAEFGEL-KRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP  162 (243)
T ss_pred             eeeeecCCcCcchHHHHHHHHHhccc-eEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence            46778999999999999999999544 35888899 8999999999999999999999994 889999999999887653


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus       163 ~  163 (243)
T KOG0533|consen  163 S  163 (243)
T ss_pred             c
Confidence            3

>KOG4209|consensus

Probab=98.38  E-value=3.1e-07  Score=74.31  Aligned_cols=77  Identities=27%  Similarity=0.233  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++.+++-|.+|.++|..-|+.|+-+ +.|.|+.|+..|.++|+|||+|.+.+.++.|++.|+..|.+|-|+|..-..+
T Consensus       104 v~v~nvd~~~t~~~~e~hf~~Cg~i-~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~  180 (231)
T KOG4209|consen  104 VWVGNVDFLVTLTKIELHFESCGGI-NRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTN  180 (231)
T ss_pred             EEEeccccccccchhhheeeccCCc-cceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeee
Confidence            3457899999999999999999877 4799999988889999999999999999999999999999999999877653

>KOG4208|consensus

Probab=98.37  E-value=6.9e-07  Score=71.27  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             hcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          30 HTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .-+|+-.-+..|..||..+ +.+. .+++..++.||.++|+|||+|+|++.|+-|-+ +|.-+|.++-+++-.--+
T Consensus        55 ~~~p~g~~e~~~~~~~~q~~g~v~-r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp  129 (214)
T KOG4208|consen   55 DHIPHGFFETEILNYFRQFGGTVT-RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP  129 (214)
T ss_pred             cccccchhHHHHhhhhhhcCCeeE-EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence            4578889999999999998 7764 57777899999999999999999999998887 798888888777655443

>KOG0110|consensus

Probab=98.30  E-value=1.7e-06  Score=78.81  Aligned_cols=74  Identities=14%  Similarity=0.195  Sum_probs=63.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC----CcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG----RPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G----r~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~s  101 (141)
                      ++..||+|++|.+++..-|+-.|.|. +|.|..- .++    .+.|+|||+|.++++|+.|++. ++..|+|+.|+|..|
T Consensus       518 lfvkNlnf~Tt~e~l~~~F~k~G~Vl-S~~I~kk-kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S  595 (725)
T KOG0110|consen  518 LFVKNLNFDTTLEDLEDLFSKQGTVL-SIEISKK-KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS  595 (725)
T ss_pred             hhhhcCCcccchhHHHHHHHhcCeEE-EEEEecc-ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence            78899999999999999999997663 5766554 333    3669999999999999999995 779999999999888


Q ss_pred             c
Q psy3067         102 R  102 (141)
Q Consensus       102 s  102 (141)
                      -
T Consensus       596 ~  596 (725)
T KOG0110|consen  596 E  596 (725)
T ss_pred             c
Confidence            6

>KOG0148|consensus

Probab=98.28  E-value=5.4e-07  Score=74.74  Aligned_cols=66  Identities=23%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      |+.+|++--.||++|++-|+.++.+. .|++..|+      |+|||.|.+.|+|..|+- .|+..|++..|..+
T Consensus       167 VY~G~I~~~lte~~mr~~Fs~fG~I~-EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs  233 (321)
T KOG0148|consen  167 VYVGNIASGLTEDLMRQTFSPFGPIQ-EVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS  233 (321)
T ss_pred             EEeCCcCccccHHHHHHhcccCCcce-EEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence            35578888899999999999998774 69999883      899999999999999997 79999999887644

>KOG0145|consensus

Probab=98.27  E-value=1.6e-06  Score=71.91  Aligned_cols=76  Identities=13%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      |+|+-||.-++.|.-+.+.|.+++.|. .|.++.|..+.+-+|++||.+.+-++|..|+. .|+-.|++|.+.|..-+
T Consensus       280 ciFvYNLspd~de~~LWQlFgpFGAv~-nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt  356 (360)
T KOG0145|consen  280 CIFVYNLSPDADESILWQLFGPFGAVT-NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT  356 (360)
T ss_pred             EEEEEecCCCchHhHHHHHhCccccee-eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence            556668899999999999999998884 69999997679999999999999999999997 79999999999987543

>KOG0131|consensus

Probab=98.27  E-value=1.3e-06  Score=68.88  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      +++.+||...+.|+-+.+-|+-++++-.-=.|+.|+.+|.+.|+|||-|++.|.+.+|+. .+++++.+|.|.|.-+-.+
T Consensus        98 nlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen   98 NLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             cccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence            456678999999999999999998774334678887889999999999999999999998 6999999999999877553

>KOG0111|consensus

Probab=98.25  E-value=4.5e-07  Score=73.65  Aligned_cols=76  Identities=17%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++||.-.+||.=+..-|=+++-+. +|.++.|-.++|.+|+|||+|.-.|||..|+. +|...|=||.|.|..+.+
T Consensus        13 lYVGGladeVtekvLhaAFIPFGDI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP   89 (298)
T KOG0111|consen   13 LYVGGLADEVTEKVLHAAFIPFGDIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP   89 (298)
T ss_pred             EEeccchHHHHHHHHHhccccccchh-hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence            45689999999999999999996553 69999998889999999999999999999998 799999999999999875

>KOG0116|consensus

Probab=98.22  E-value=4.3e-06  Score=72.95  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=61.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      |++++||+++++++|.++|+.++.+ +.+|.+..  ..++.-.+|||+|.+.++++.|+..+...|++|.+-|..-.
T Consensus       291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~--~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~  365 (419)
T KOG0116|consen  291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS--PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR  365 (419)
T ss_pred             eEeecCCCCCCHHHHHHHHhhcccccccceEEec--cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence            7889999999999999999999655 45555544  23433399999999999999999999999999988877543

>KOG4212|consensus

Probab=98.15  E-value=1.9e-06  Score=75.61  Aligned_cols=68  Identities=21%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      .||++||||++|.+-+++-|..|+-|. .+.| +  .+|+++|  -|.|.++++|+.|.. +++..+.+|.|.|.
T Consensus       538 qIiirNlP~dfTWqmlrDKfre~G~v~-yadi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~  606 (608)
T KOG4212|consen  538 QIIIRNLPFDFTWQMLRDKFREIGHVL-YADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT  606 (608)
T ss_pred             EEEEecCCccccHHHHHHHHHhcccee-hhhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence            368899999999999999999996553 3444 2  4799998  899999999999999 69999999999985

>KOG1548|consensus

Probab=98.09  E-value=4.6e-06  Score=71.00  Aligned_cols=76  Identities=17%  Similarity=0.311  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCccccc-------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNG-------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF   98 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~-------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV   98 (141)
                      |+++|||-++|.+++.++|+-|+|+..+       |.|-.| .+|+.+|.|.+.|--.|++..|++ +|...+.|+.|.|
T Consensus       137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV  215 (382)
T KOG1548|consen  137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV  215 (382)
T ss_pred             EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence            6789999999999999999999887423       677777 789999999999999999999999 5999999999999


Q ss_pred             Eecch
Q psy3067          99 TGHRY  103 (141)
Q Consensus        99 ~~ss~  103 (141)
                      ..+..
T Consensus       216 erAkf  220 (382)
T KOG1548|consen  216 ERAKF  220 (382)
T ss_pred             ehhhh
Confidence            99875

>KOG0226|consensus

Probab=98.08  E-value=1.6e-06  Score=71.31  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+-+-|-=.++++-+..-|+.+.-- ....++.|+.+|+++|++||.|.+++|+..||+ +++.+.|.|.|.+-.+.+.
T Consensus       192 RIfcgdlgNevnd~vl~raf~Kfpsf-~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk  270 (290)
T KOG0226|consen  192 RIFCGDLGNEVNDDVLARAFKKFPSF-QKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK  270 (290)
T ss_pred             eeecccccccccHHHHHHHHHhccch-hhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence            45556666668888888888887444 357888998999999999999999999999998 7999999999999988886


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      +
T Consensus       271 e  271 (290)
T KOG0226|consen  271 E  271 (290)
T ss_pred             h
Confidence            5

>KOG0109|consensus

Probab=98.04  E-value=7.6e-06  Score=68.60  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++|++|||-.+++.+|+..|+.++-|- .+-|+++        +|||..++...+..|+. +|+-.|++-.|.|..++.+
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK   74 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVL-ECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK   74 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceE-eeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence            689999999999999999999996442 3888888        99999999999999999 7999999999999988776


Q ss_pred             hcccCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy3067         105 VQHRAPRCETSIPVSSSTHKPGRHHTLDGP  134 (141)
Q Consensus       105 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~  134 (141)
                      .+.+..-.+-++-+.|+-.+++-+--=+||
T Consensus        75 sk~stkl~vgNis~tctn~ElRa~fe~ygp  104 (346)
T KOG0109|consen   75 SKASTKLHVGNISPTCTNQELRAKFEKYGP  104 (346)
T ss_pred             CCCccccccCCCCccccCHHHhhhhcccCC
Confidence            555555556777888888877744333333

>KOG0147|consensus

Probab=98.00  E-value=5.3e-06  Score=73.82  Aligned_cols=84  Identities=17%  Similarity=0.234  Sum_probs=73.6

Q ss_pred             ecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEE
Q psy3067          19 VRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFF   98 (141)
Q Consensus        19 ~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV   98 (141)
                      ..+.|..-+|.--|+-.+++.||.+||+-.+.|. +|+|+.|+.+++++|.|||+|-+.+.+..|+...++.+.|-+|-|
T Consensus       174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVr-dVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v  252 (549)
T KOG0147|consen  174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVR-DVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV  252 (549)
T ss_pred             chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcc-eeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence            3455565666666777888999999999998884 799999999999999999999999999999999999999999999


Q ss_pred             Eecch
Q psy3067          99 TGHRY  103 (141)
Q Consensus        99 ~~ss~  103 (141)
                      .++-.
T Consensus       253 q~sEa  257 (549)
T KOG0147|consen  253 QLSEA  257 (549)
T ss_pred             cccHH
Confidence            87654

>KOG0415|consensus

Probab=97.86  E-value=1e-05  Score=69.46  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=61.5

Q ss_pred             CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        35 s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      -+|++|+--.||.+|.+ .++.++.|+.+|-+.-+|||+|.+.+++++|.= ++.-.|++|.|-|..+-.
T Consensus       250 VTtDeDLeiIFSrFG~i-~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS  318 (479)
T KOG0415|consen  250 VTTDEDLEIIFSRFGKI-VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS  318 (479)
T ss_pred             cccccchhhHHhhcccc-eeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence            34899999999999888 479999999999999999999999999999984 699999999999988743

>KOG0146|consensus

Probab=97.85  E-value=3.2e-05  Score=64.52  Aligned_cols=68  Identities=19%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC-cCCCe
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE-RIGHR   94 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~-~i~~R   94 (141)
                      .++|++=|...-+|+|++..|++++.++ .+.++.. .+|.++|.|||.|.+..+|+.|+. .|+. .|-|-
T Consensus        20 rklfvgml~kqq~e~dvrrlf~pfG~~~-e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA   89 (371)
T KOG0146|consen   20 RKLFVGMLNKQQSEDDVRRLFQPFGNIE-ECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA   89 (371)
T ss_pred             hhhhhhhhcccccHHHHHHHhcccCCcc-eeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence            3889999999999999999999998884 7999888 899999999999999999999998 6764 55543

>KOG0110|consensus

Probab=97.85  E-value=5.3e-06  Score=75.65  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      +.+|+++|+||.++..+|++.|..+|-+. +|+|+.-...+..+|+|||.|-++.+|..|+. ....++=||.+=+.-+
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlk-svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA  690 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTAFGQLK-SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA  690 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhccccee-eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence            45788999999999999999999997663 69998754567789999999999999999997 4555566665544433

>KOG0128|consensus

Probab=97.83  E-value=2.9e-06  Score=78.63  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHc-CCcCC
Q psy3067          22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKH-KERIG   92 (141)
Q Consensus        22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~-~~~i~   92 (141)
                      .+...+|.++|+..+.+.|+..+|+..++++ .|++..-..+|+++|.|||+|..++++.+|+..+ ....+
T Consensus       665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g  735 (881)
T KOG0128|consen  665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG  735 (881)
T ss_pred             HHHHHHHHhhcchhhcCchhhhhcCccchhh-hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence            5667889999999999999999999987774 4555422357999999999999999999999964 44555

>KOG0105|consensus

Probab=97.73  E-value=3.5e-05  Score=61.34  Aligned_cols=72  Identities=19%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      |..+|||-++.++||.+.|..++-+- .|.|..  . =.+-.+|||+|+++.||+.|+. +|+--+++-.+.|....
T Consensus         9 iyvGNLP~diRekeieDlFyKyg~i~-~ieLK~--r-~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr   81 (241)
T KOG0105|consen    9 IYVGNLPGDIREKEIEDLFYKYGRIR-EIELKN--R-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR   81 (241)
T ss_pred             EEecCCCcchhhccHHHHHhhhcceE-EEEecc--C-CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence            56789999999999999999996552 355432  2 2356799999999999999998 79999999888888764

>KOG0109|consensus

Probab=97.67  E-value=6.7e-05  Score=63.02  Aligned_cols=77  Identities=14%  Similarity=0.090  Sum_probs=65.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++.++|+.+.|+.++++.-|..++.|- .+.|+.|        ++||.|.-.++|..|++ +|+..+.|+.+.|..++. 
T Consensus        80 kl~vgNis~tctn~ElRa~fe~ygpvi-ecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts-  149 (346)
T KOG0109|consen   80 KLHVGNISPTCTNQELRAKFEKYGPVI-ECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS-  149 (346)
T ss_pred             ccccCCCCccccCHHHhhhhcccCCce-eeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecc-
Confidence            567789999999999999999998773 5788887        99999999999999998 799999999999999876 


Q ss_pred             hcccCCCC
Q psy3067         105 VQHRAPRC  112 (141)
Q Consensus       105 ~~~~~~~~  112 (141)
                      ...+++.+
T Consensus       150 rlrtapgm  157 (346)
T KOG0109|consen  150 RLRTAPGM  157 (346)
T ss_pred             ccccCCCC
Confidence            23444443

>KOG4849|consensus

Probab=97.66  E-value=2.2e-05  Score=67.51  Aligned_cols=78  Identities=9%  Similarity=0.073  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |++++||-|.+|++|+.+-....++.+ .++.+..++.+|+++|+|.|...|+.++++.|+ .-...|+|..=.|..|+.
T Consensus        82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK  161 (498)
T KOG4849|consen   82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK  161 (498)
T ss_pred             EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence            678899999999999999999876543 347788888999999999999999999999999 578899999888888875

>KOG0124|consensus

Probab=97.64  E-value=5.5e-05  Score=65.41  Aligned_cols=97  Identities=13%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             CcCCCCceeEEEEEecHH-H--------------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067           5 RTGEVSDRYIEVFKVRRQ-E--------------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE   69 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~-d--------------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~   69 (141)
                      |.+.||.|-|-|=..++- .              ++-+++..++-+.+|+||+.-|+.++.+. .+.+..++..+..+|+
T Consensus       176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-~C~LAr~pt~~~HkGy  254 (544)
T KOG0124|consen  176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKGY  254 (544)
T ss_pred             ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhccee-eEEeeccCCCCCccce
Confidence            456677777776554431 1              11123346788999999999999996442 4999999777799999


Q ss_pred             eEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          70 AYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        70 afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +|++|.+....+.|+. +|---+||.|+.|-.|-
T Consensus       255 GfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v  288 (544)
T KOG0124|consen  255 GFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV  288 (544)
T ss_pred             eeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence            9999999999999998 68889999999999884

>KOG1995|consensus

Probab=97.60  E-value=3.7e-05  Score=65.49  Aligned_cols=80  Identities=21%  Similarity=0.165  Sum_probs=70.3

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCccc-------ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIIS-------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY   95 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~-------~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry   95 (141)
                      ...+++-+||-++++++|.+||..|++++       --|.|-+|+.|++++|+|-|.|.++..|+.|+. .+++.+.+-.
T Consensus        66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~  145 (351)
T KOG1995|consen   66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT  145 (351)
T ss_pred             cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence            34677889999999999999999999873       247788899999999999999999999999999 6888888899


Q ss_pred             EEEEecch
Q psy3067          96 IFFTGHRY  103 (141)
Q Consensus        96 IeV~~ss~  103 (141)
                      |+|.++..
T Consensus       146 ikvs~a~~  153 (351)
T KOG1995|consen  146 IKVSLAER  153 (351)
T ss_pred             chhhhhhh
Confidence            99998854

>KOG0146|consensus

Probab=97.57  E-value=6.3e-05  Score=62.82  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      |+--||-...+.||.+.|-+++ ||.  ..+..|+.+..++-|+||.|+++..++.|++ +|+--||-+.+.|..-++++
T Consensus       289 FIYHLPQEFgDaEliQmF~PFGhivS--aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd  366 (371)
T KOG0146|consen  289 FIYHLPQEFGDAELIQMFLPFGHIVS--AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD  366 (371)
T ss_pred             EEEeCchhhccHHHHHHhccccceee--eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence            3345899999999999999995 654  7888888999999999999999999999998 79999998888777655533

>KOG4210|consensus

Probab=97.45  E-value=5.8e-05  Score=62.78  Aligned_cols=74  Identities=24%  Similarity=0.299  Sum_probs=65.2

Q ss_pred             HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      +.+++|+++++||..+|..++-+. .|+++.++.+|...|+|||.|.+-....+|+.-....+++|++-+.....
T Consensus       190 ~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (285)
T KOG4210|consen  190 VGELDFSLTRDDLKEHFVSSGEIT-SVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP  263 (285)
T ss_pred             ecccccccchHHHhhhccCcCcce-eeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence            679999999999999999996553 59999998999999999999999999998887778899999988877655

>KOG0153|consensus

Probab=97.38  E-value=0.00019  Score=61.29  Aligned_cols=66  Identities=27%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcCCCeeEEEEecc
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHRYIFFTGHR  102 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i~~RyIeV~~ss  102 (141)
                      +||--.++|.||+++|-.||-+. +|.++..  .    |-|||+|.+.++|++|..+  +.-.|+|+.|.|.=.+
T Consensus       234 g~l~d~v~e~dIrdhFyqyGeir-si~~~~~--~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~  301 (377)
T KOG0153|consen  234 GGLNDEVLEQDIRDHFYQYGEIR-SIRILPR--K----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR  301 (377)
T ss_pred             cccccchhHHHHHHHHhhcCCee-eEEeecc--c----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence            46655889999999999998774 6777664  2    4899999999999999985  7778999999998433

>KOG4661|consensus

Probab=97.19  E-value=0.00054  Score=62.24  Aligned_cols=75  Identities=12%  Similarity=0.156  Sum_probs=63.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +.++||+-++-..||++.|+.|+-| .+..++.+..+=-.+-++||.+.+.++|.+.+. +|+..|+||-|.|..+.
T Consensus       408 lWVSGLSstTRAtDLKnlFSKyGKV-vGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK  483 (940)
T KOG4661|consen  408 LWVSGLSSTTRATDLKNLFSKYGKV-VGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK  483 (940)
T ss_pred             eeeeccccchhhhHHHHHHHHhcce-eceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence            4557899999999999999999755 368888883333455699999999999999999 69999999999999875

>KOG0132|consensus

Probab=97.17  E-value=0.00058  Score=63.43  Aligned_cols=68  Identities=24%  Similarity=0.308  Sum_probs=58.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~s  101 (141)
                      +++++||-+++|.||++.|+.|+-+. +|.++-.      +|.|||.+.+..+|.+||++ ....+.++.|.|.=+
T Consensus       424 LwvG~i~k~v~e~dL~~~feefGeiq-Si~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa  492 (894)
T KOG0132|consen  424 LWVGGIPKNVTEQDLANLFEEFGEIQ-SIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA  492 (894)
T ss_pred             eeeccccchhhHHHHHHHHHhcccce-eEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence            46679999999999999999998774 6776654      58999999999999999984 788899999987654

>KOG4206|consensus

Probab=96.87  E-value=0.002  Score=52.06  Aligned_cols=73  Identities=19%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             HHHHhcCCCCCCHHHHHh----hcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQ----FFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~----FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      .+++++|.=-+..++++.    .|+.|+ |++  |..  - .+.+.+|.|||.|.+.+.|..|+. +++-.+=|.++.|.
T Consensus        11 TlYInnLnekI~~~elkrsL~~LFsqfG~ild--I~a--~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq   85 (221)
T KOG4206|consen   11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILD--ISA--F-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ   85 (221)
T ss_pred             eEeehhccccccHHHHHHHHHHHHHhhCCeEE--EEe--c-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence            356678888888899888    999997 543  443  3 578999999999999999999998 58888888999888


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      -+..
T Consensus        86 yA~s   89 (221)
T KOG4206|consen   86 YAKS   89 (221)
T ss_pred             cccC
Confidence            7753

>KOG0106|consensus

Probab=96.81  E-value=0.00039  Score=56.00  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      .++++.|||.+.+.||-.||.+++-+. +|.+..        |++||+|.++.+|..|+- .|+..|.+=.+-|..
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg~~~-d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~   69 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYGKIP-DADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH   69 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhccccc-cceeec--------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence            467789999999999999999997664 344422        688999999999999996 566655543333333

>KOG0128|consensus

Probab=96.65  E-value=0.0015  Score=61.01  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             cCCCCceeEEEEEecHHH------------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEE
Q psy3067           6 TGEVSDRYIEVFKVRRQE------------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQ   73 (141)
Q Consensus         6 ~~~ig~RyIEv~~~~~~d------------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~   73 (141)
                      +..=|.-|+|+.......            ...++.+|.||.+|.++++..++..+.+. +.+++.. ..|+|+|.|||.
T Consensus       706 ~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~~vt~-r~gkpkg~a~v~  783 (881)
T KOG0128|consen  706 KRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVT-SLRLVTV-RAGKPKGKARVD  783 (881)
T ss_pred             cccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCCCchHHHHhhccccCCcc-ccchhhh-hccccccceecc
Confidence            334467788876654332            12457789999999999999999997774 6788888 899999999999


Q ss_pred             eCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          74 FVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        74 F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |.++.++.+++. .+...+.-+-++|..+++
T Consensus       784 y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp  814 (881)
T KOG0128|consen  784 YNTEADASRKVASVDVAGKRENNGEVQVSNP  814 (881)
T ss_pred             CCCcchhhhhcccchhhhhhhcCccccccCC
Confidence            999999999987 588888888888887765

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.64  E-value=0.0072  Score=42.99  Aligned_cols=65  Identities=15%  Similarity=0.032  Sum_probs=52.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG   92 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~   92 (141)
                      ++.||+|-..|.+++.+.+...  +-- +=+-++.|..++...|+|||-|.++++|.+-.+ .|+....
T Consensus         4 vMirNIPn~~t~~~L~~~l~~~~~g~y-DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~   71 (97)
T PF04059_consen    4 VMIRNIPNKYTQEMLIQILDEHFKGKY-DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP   71 (97)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhccCcc-eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence            4678999999999999988764  222 346678887889999999999999999988776 4766554

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0129|consensus

Probab=96.56  E-value=0.005  Score=54.92  Aligned_cols=58  Identities=14%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec-CCCC--Ccce---eeEEEeCCHHHHHHHHH
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED-PFNG--RPTG---EAYVQFVDKETAELALQ   85 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d-~~~G--r~~G---~afV~F~s~e~a~~AL~   85 (141)
                      +||.+||||+.+|+.|..+|..|+.+.  |..+.. ...+  -++|   ++|..|+++..++.-|.
T Consensus       261 KVFvGGlp~dise~~i~~~F~~FGs~~--VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~  324 (520)
T KOG0129|consen  261 KVFVGGLPWDITEAQINASFGQFGSVK--VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS  324 (520)
T ss_pred             ceeecCCCccccHHHHHhhcccccceE--eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence            678899999999999999999998775  555421 0112  4667   99999999999888776

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=96.53  E-value=0.0043  Score=44.42  Aligned_cols=65  Identities=25%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---c---CCcCCCeeEEEEec
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---H---KERIGHRYIFFTGH  101 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~---~~~i~~RyIeV~~s  101 (141)
                      .|++-.++.+||++.|+.++.|    ..+-- ..|..  +|||.|.++++|++|+++   .   .-.|.+-.+.+..-
T Consensus         7 ~g~~~~~~re~iK~~f~~~g~V----~yVD~-~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL   77 (105)
T PF08777_consen    7 SGLGEPTSREDIKEAFSQFGEV----AYVDF-SRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL   77 (105)
T ss_dssp             EE--SS--HHHHHHHT-SS--E----EEEE---TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred             ecCCCCcCHHHHHHHHHhcCCc----ceEEe-cCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence            3577788999999999999854    33332 34443  689999999999999984   2   23456655555443

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4454|consensus

Probab=96.49  E-value=0.0031  Score=51.44  Aligned_cols=74  Identities=14%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss  102 (141)
                      .+++.++--.++|+-|-+.|-.-|+| -.|.|..+ ++++++ ||||.|.++-.+.-|+++ |+-.+-++.|.|.+-+
T Consensus        11 tl~v~n~~~~v~eelL~ElfiqaGPV-~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~   85 (267)
T KOG4454|consen   11 TLLVQNMYSGVSEELLSELFIQAGPV-YKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC   85 (267)
T ss_pred             HHHHHhhhhhhhHHHHHHHhhccCce-EEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence            68889999999999999999998766 24888888 889999 999999999999999994 9999999998887754

>KOG0120|consensus

Probab=96.43  E-value=0.0039  Score=55.70  Aligned_cols=79  Identities=14%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ..++++|||...+++.+++....++.+. +-.++.|..+|.++|+||.+|-++.....|.+ .|+..+++..+-|..+..
T Consensus       290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk-~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~  368 (500)
T KOG0120|consen  290 NKIFVGGLPLYLTEDQVKELLDSFGPLK-AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV  368 (500)
T ss_pred             chhhhccCcCccCHHHHHHHHHhcccch-hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence            4678899999999999999999998774 78899997789999999999999999999998 799999999998888765


Q ss_pred             h
Q psy3067         104 T  104 (141)
Q Consensus       104 ~  104 (141)
                      .
T Consensus       369 g  369 (500)
T KOG0120|consen  369 G  369 (500)
T ss_pred             c
Confidence            3

>KOG0151|consensus

Probab=96.11  E-value=0.013  Score=54.39  Aligned_cols=75  Identities=11%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ++.++||+-+++++.+..-|..|+++. +|.|+.-+..   -+..-.+||.|.+..||++||+ +++..+-.+.+.+--.
T Consensus       176 Nlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg  254 (877)
T KOG0151|consen  176 NLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG  254 (877)
T ss_pred             ceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence            567789999999999999999999884 7888775222   3667789999999999999998 5777777777665544

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=96.01  E-value=0.019  Score=36.18  Aligned_cols=39  Identities=23%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067          39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL   84 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL   84 (141)
                      ++|+.+|+.||-+. .+.+.      ..+-..||.|.++.+|++||
T Consensus        15 ~~vl~~F~~fGeI~-~~~~~------~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   15 EEVLEHFASFGEIV-DIYVP------ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHHHHhcCCEE-EEEcC------CCCcEEEEEECCHHHHHhhC
Confidence            66777999996542 24443      12237999999999999996

>KOG4660|consensus

Probab=95.96  E-value=0.0046  Score=55.50  Aligned_cols=63  Identities=22%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067          29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF   97 (141)
Q Consensus        29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe   97 (141)
                      +-+||-++++++|+..|+-+|-|. +|+.-.     ...|.+||+|-+..+|+.||+ .++..|.++.|.
T Consensus        80 v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k  143 (549)
T KOG4660|consen   80 VFNLPRSVSNDTLLRIFGAYGEIR-EIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK  143 (549)
T ss_pred             EEecCCcCCHHHHHHHHHhhcchh-hhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence            348999999999999999998775 477444     456899999999999999998 699999999887

>KOG1457|consensus

Probab=95.87  E-value=0.046  Score=44.88  Aligned_cols=78  Identities=13%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCC-cceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEE
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGR-PTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFF   98 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr-~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV   98 (141)
                      +.-+|+.|||-+++..+|...|.+|.-- ++.+|-+.-..++ -+=.|||.|.|..+|..|+. .|+-.++   +..+.|
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GY-EgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi  112 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGY-EGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI  112 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCc-cceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence            6678999999999999999999999444 3566655412222 23579999999999999997 5776665   334444


Q ss_pred             Eecc
Q psy3067          99 TGHR  102 (141)
Q Consensus        99 ~~ss  102 (141)
                      ..+.
T Consensus       113 ElAK  116 (284)
T KOG1457|consen  113 ELAK  116 (284)
T ss_pred             eehh
Confidence            4443

>KOG0106|consensus

Probab=95.48  E-value=0.0078  Score=48.53  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +..+++-.+.+.||.+.|..++.+.. ..+        ..++++|+|++++++..|+. +++..+.++.|.+.....
T Consensus       103 ~~~~~~~r~~~qdl~d~~~~~g~~~~-~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~  170 (216)
T KOG0106|consen  103 IVRNLSLRVSWQDLKDHFRPAGEVTY-VDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR  170 (216)
T ss_pred             eeccchhhhhHHHHhhhhcccCCCch-hhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence            34567777788999999999987641 111        45699999999999999998 599999999999954433

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=95.25  E-value=0.044  Score=38.50  Aligned_cols=65  Identities=18%  Similarity=0.125  Sum_probs=39.5

Q ss_pred             HHhcCCCCCCHHHHHhh----cccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067          28 LQHTGIVEGKKDDIAQF----FDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~F----Fs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss  102 (141)
                      ++.|||-+....-|+.-    +..||=--  +.|     +|   |-|.|.|.+++.|++|+++ +++-.-|+.|.|..+.
T Consensus         6 ~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v-----~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen    6 YVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSV-----SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             EEES--TTS-HHHHHHHHHHHHHTTT--E--EE-------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred             EEecCCCCCCHHHHHHHHHHHhhccCCEE--EEE-----eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence            45689988877776554    44774210  222     22   6899999999999999995 8888888889888763

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=95.20  E-value=0.05  Score=35.80  Aligned_cols=48  Identities=31%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             HHhcCCCCCCHHHHHhhcccC----CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGL----EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ   85 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~----~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~   85 (141)
                      ..+|+ =+.+.+||.+||+.+    ++.  .|..+-| .      .|-|.|.+++.|.+||.
T Consensus         9 hirGv-d~lsT~dI~~y~~~y~~~~~~~--~IEWIdD-t------ScNvvf~d~~~A~~AL~   60 (62)
T PF10309_consen    9 HIRGV-DELSTDDIKAYFSEYFDEEGPF--RIEWIDD-T------SCNVVFKDEETAARALV   60 (62)
T ss_pred             EEEcC-CCCCHHHHHHHHHHhcccCCCc--eEEEecC-C------cEEEEECCHHHHHHHHH
Confidence            34554 246789999999999    554  5998888 2      59999999999999996

>KOG0120|consensus

Probab=95.04  E-value=0.045  Score=49.08  Aligned_cols=64  Identities=14%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             HHHHhhcccCCcccccEEEeec---CCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          39 DDIAQFFDGLEIISNGITLVED---PFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d---~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +||+.=++.++++. .|.|+.+   ....-.+|-.||+|++.+++++|++ +++..+.+|.|-..=...
T Consensus       424 Edvr~ec~k~g~v~-~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde  491 (500)
T KOG0120|consen  424 EDVRTECAKFGAVR-SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE  491 (500)
T ss_pred             HHHHHHhcccCcee-EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence            44555566677773 5776554   2335678999999999999999998 799999999876544444

>KOG0129|consensus

Probab=94.96  E-value=0.045  Score=48.99  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             CCCceeEEEEEecHHHHHHH-------------HHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEE
Q psy3067           8 EVSDRYIEVFKVRRQEMDWK-------------LQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQ   73 (141)
Q Consensus         8 ~ig~RyIEv~~~~~~d~~~~-------------~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~   73 (141)
                      -|+.++|.|-++.-.|...+             |++|||=-.|.++|..+|+++ +.| --|-|-.|++-+=|+|-|=|.
T Consensus       341 ~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV-~yaGIDtD~k~KYPkGaGRVt  419 (520)
T KOG0129|consen  341 TIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGV-LYVGIDTDPKLKYPKGAGRVT  419 (520)
T ss_pred             cccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCce-EEEEeccCcccCCCCCcceee
Confidence            46778888888866665433             668999999999999999977 555 257788887788999999999


Q ss_pred             eCCHHHHHHHHHH-----cCCcCCCeeEEEEecc
Q psy3067          74 FVDKETAELALQK-----HKERIGHRYIFFTGHR  102 (141)
Q Consensus        74 F~s~e~a~~AL~k-----~~~~i~~RyIeV~~ss  102 (141)
                      |.+..+..+|+..     +...+.. .|||.|--
T Consensus       420 FsnqqsYi~AIsarFvql~h~d~~K-RVEIkPYv  452 (520)
T KOG0129|consen  420 FSNQQAYIKAISARFVQLDHTDIDK-RVEIKPYV  452 (520)
T ss_pred             ecccHHHHHHHhhheEEEeccccce-eeeeccee
Confidence            9999999999973     2333443 56777654

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=94.23  E-value=0.14  Score=36.53  Aligned_cols=64  Identities=11%  Similarity=0.157  Sum_probs=42.2

Q ss_pred             CHHHHHhhcccCC-cccccEEEeecCCC-------CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEE-EEecc
Q psy3067          37 KKDDIAQFFDGLE-IISNGITLVEDPFN-------GRPTGEAYVQFVDKETAELALQKHKERIGHRYIF-FTGHR  102 (141)
Q Consensus        37 te~DI~~FFs~~~-iv~~~I~i~~d~~~-------Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIe-V~~ss  102 (141)
                      ....|.+.|+.|| |++ ...+..+ ..       -.-..-..|.|+++.+|++||++|+..+++-.|- |.+|.
T Consensus        18 ~~~~Vl~~F~~~G~Ile-~~~~~~~-~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~   90 (100)
T PF05172_consen   18 ASNQVLRHFSSFGTILE-HFEVLRS-SSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD   90 (100)
T ss_dssp             GHHHHHHHHHCCS-EEC-EEGGG-----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred             HHHHHHHHHHhcceEEE-eeccccc-ccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence            3477889999996 443 2211111 00       1123467899999999999999999999987665 55553

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG1190|consensus

Probab=94.02  E-value=0.15  Score=44.93  Aligned_cols=66  Identities=14%  Similarity=0.142  Sum_probs=57.3

Q ss_pred             CCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          32 GIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        32 Lp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      -++.+|.+-+-..|+-||-|. .|.|++++.     -.|.|++.+...|+.|+. .+++.|-|+.|+|..|+-
T Consensus       306 n~~~VT~d~LftlFgvYGdVq-RVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH  372 (492)
T KOG1190|consen  306 NEEAVTPDVLFTLFGVYGDVQ-RVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH  372 (492)
T ss_pred             chhccchhHHHHHHhhhcceE-EEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence            366789999999999997663 699998733     369999999999999999 699999999999999863

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=93.81  E-value=0.2  Score=38.28  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=43.6

Q ss_pred             EEEEEecHHHHHHHHHh----cCCCC----------------CCH----HHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067          14 IEVFKVRRQEMDWKLQH----TGIVE----------------GKK----DDIAQFFDGLEIISNGITLVEDPFNGRPTGE   69 (141)
Q Consensus        14 IEv~~~~~~d~~~~~~~----gLp~s----------------~te----~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~   69 (141)
                      |||++++.+..+.+++-    =.|-+                .-.    +++.+-|+.+|.+- -|+++.        +.
T Consensus         2 Iev~~Vd~~~r~~Vf~eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Gevv-LvRfv~--------~~   72 (146)
T PF08952_consen    2 IEVQEVDEEKRESVFEEVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVV-LVRFVG--------DT   72 (146)
T ss_dssp             ------------------S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-EC-EEEEET--------TC
T ss_pred             ccEEEeCHHHHHHHHHHHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceE-EEEEeC--------Ce
Confidence            78888888777666551    11111                112    36788888887541 244443        37


Q ss_pred             eEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          70 AYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        70 afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      -+|.|.+-+.|-+||++++..++|+.|.|.+-+++
T Consensus        73 mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd  107 (146)
T PF08952_consen   73 MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD  107 (146)
T ss_dssp             EEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred             EEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence            99999999999999999999999999999998754

; PDB: 1UFW_A 2DNR_A.

>KOG2314|consensus

Probab=93.71  E-value=0.083  Score=48.17  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=42.9

Q ss_pred             HHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067          40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR   94 (141)
Q Consensus        40 DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R   94 (141)
                      -|.+.|+.++.+ ....++.| ..|..+|+.|+++++..+|+.|++ .|+..|+..
T Consensus        80 vl~kvfsk~gk~-vn~~~P~~-e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn  133 (698)
T KOG2314|consen   80 VLTKVFSKAGKI-VNMYYPID-EEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN  133 (698)
T ss_pred             HHHHHHHhhccc-cceeeccC-ccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence            366778888644 34888888 677799999999999999999999 588776543

>KOG2202|consensus

Probab=93.28  E-value=0.051  Score=44.90  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             HHHHhhcc-cCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          39 DDIAQFFD-GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        39 ~DI~~FFs-~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +||-.+|+ .++-+. .+.+..+ ..-.-.|-+||.|.++|+|++|++ .|+..+.||+|-...+.
T Consensus        83 Ed~f~E~~~kygEie-e~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p  146 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIE-ELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP  146 (260)
T ss_pred             HHHHHHHHHHhhhhh-hhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence            45555555 454442 3545554 334677899999999999999998 69999999998666553

>KOG1457|consensus

Probab=93.24  E-value=0.14  Score=42.16  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ   85 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~   85 (141)
                      .+|+.||.-+|||++++..|+.+.--.  |.-+.. +.|.+  .|||+|+..+.|..||.
T Consensus       212 tlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~-~~g~~--vaf~~~~~~~~at~am~  266 (284)
T KOG1457|consen  212 TLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRA-RGGMP--VAFADFEEIEQATDAMN  266 (284)
T ss_pred             hHhhhccCCCCCHHHHHHHHHhCCCce--EEEEec-CCCcc--eEeecHHHHHHHHHHHH
Confidence            467889999999999999999873211  222233 45544  58888888888888886

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=92.73  E-value=0.32  Score=34.06  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=36.9

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK   86 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k   86 (141)
                      ..|-.....||.+.|++||-+.  |..+-|       ..|||.+...+.|+.|+..
T Consensus        15 tFPkeWK~~DI~qlFspfG~I~--VsWi~d-------TSAfV~l~~r~~~~~v~~~   61 (87)
T PF08675_consen   15 TFPKEWKTSDIYQLFSPFGQIY--VSWIND-------TSAFVALHNRDQAKVVMNT   61 (87)
T ss_dssp             E--TT--HHHHHHHCCCCCCEE--EEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred             eCchHhhhhhHHHHhccCCcEE--EEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence            3577788899999999998765  888877       3699999999999998874

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG1548|consensus

Probab=92.44  E-value=0.46  Score=41.03  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=45.3

Q ss_pred             HHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        40 DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ||++==+.||+|. .| +++|   --|.|.+-|.|.+.++|..+++ +++..++||.|.-+...-
T Consensus       292 dl~eec~K~G~v~-~v-vv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG  351 (382)
T KOG1548|consen  292 DLTEECEKFGQVR-KV-VVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG  351 (382)
T ss_pred             HHHHHHHHhCCcc-eE-EEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence            3333344568875 33 4555   4578999999999999999999 699999999998877654

>KOG1190|consensus

Probab=91.96  E-value=0.39  Score=42.39  Aligned_cols=68  Identities=16%  Similarity=0.113  Sum_probs=50.5

Q ss_pred             hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEEEEecc
Q psy3067          30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIFFTGHR  102 (141)
Q Consensus        30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIeV~~ss  102 (141)
                      .|+|-+++|+|+++-|..-+-.   |..-+  .-++..-.|++++.|.|+|..||- +|.+.++.- -+.|..+.
T Consensus       420 snip~svsee~lk~~f~~~g~~---vkafk--ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk  489 (492)
T KOG1190|consen  420 SNIPPSVSEEDLKNLFQEPGGQ---VKAFK--FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK  489 (492)
T ss_pred             ccCCcccchhHHHHhhhcCCce---EEeee--ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence            4889999999999999987533   22211  223344479999999999999997 688888865 66666553

>KOG0115|consensus

Probab=91.86  E-value=0.17  Score=42.02  Aligned_cols=93  Identities=20%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcC---CCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERI---GHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i---~~RyIeV~~  100 (141)
                      .+.+.||+--++-+.+.+=|+-++.++ ...++.| ..|+++|++.|+|+..-.+.+|+.+  ++-..   .+|..-|.+
T Consensus        33 ~l~V~nl~~~~sndll~~~f~~fg~~e-~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP  110 (275)
T KOG0115|consen   33 ELYVVNLMQGASNDLLEQAFRRFGPIE-RAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP  110 (275)
T ss_pred             eEEEEecchhhhhHHHHHhhhhcCccc-hheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence            345678888899999999999998875 4555566 7899999999999999999999985  34433   355555544


Q ss_pred             cchhhcccCCCCCCCCcccCCCCCCC
Q psy3067         101 HRYTVQHRAPRCETSIPVSSSTHKPG  126 (141)
Q Consensus       101 ss~~~~~~~~~~~~~lp~~~~~~~~~  126 (141)
                      +..      +..+.|+|-++....+.
T Consensus       111 ~eq------~~d~~G~~~k~~~~~~~  130 (275)
T KOG0115|consen  111 MEQ------PDDNDGGPEKGGGGGPS  130 (275)
T ss_pred             hhc------cCCCCcchhhcCCCCCC
Confidence            432      34444555554444444

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.58  E-value=0.39  Score=41.66  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             cCCCCCCHHHH------HhhcccCCcccccEEEeecCCC---CCcceee--EEEeCCHHHHHHHHHH-cCCcCCCeeEEE
Q psy3067          31 TGIVEGKKDDI------AQFFDGLEIISNGITLVEDPFN---GRPTGEA--YVQFVDKETAELALQK-HKERIGHRYIFF   98 (141)
Q Consensus        31 gLp~s~te~DI------~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~a--fV~F~s~e~a~~AL~k-~~~~i~~RyIeV   98 (141)
                      |||-.+..+++      -+||..+|-+   +.|+.++.+   ....|.+  ||.|.+.|||..+++. |+.+++||.|.-
T Consensus       121 gi~pkva~Ee~~~vLk~~eyFGQyGkI---~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lka  197 (480)
T COG5175         121 GIPPKVADEEVAPVLKRHEYFGQYGKI---KKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKA  197 (480)
T ss_pred             cCCCCCCcccccccccchhhhhhccce---eEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEee
Confidence            56666655552      3799999766   355555333   1223335  9999999999999985 999999998864


Q ss_pred             E
Q psy3067          99 T   99 (141)
Q Consensus        99 ~   99 (141)
                      .
T Consensus       198 t  198 (480)
T COG5175         198 T  198 (480)
T ss_pred             e
Confidence            4

>KOG4285|consensus

Probab=86.99  E-value=1.4  Score=37.63  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCe-eEEEEecch
Q psy3067          39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR-YIFFTGHRY  103 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~R-yIeV~~ss~  103 (141)
                      .=|.+-|+.|+-|   |..+.- .+|   -.-+|.+.+.-+|++||.+|+..|++- -|-|.+|.-
T Consensus       211 s~vL~~F~~cG~V---vkhv~~-~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD  269 (350)
T KOG4285|consen  211 SIVLNLFSRCGEV---VKHVTP-SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD  269 (350)
T ss_pred             hHHHHHHHhhCee---eeeecC-CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence            4577788999644   222222 344   578999999999999999999999876 678999864

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=86.22  E-value=2.6  Score=27.76  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=33.0

Q ss_pred             CCHHHHHhhcccC-Ccccc---cEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          36 GKKDDIAQFFDGL-EIISN---GITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        36 ~te~DI~~FFs~~-~iv~~---~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .+..||..++... ++...   .|.|..+        ++||+.... .++++++ .++..+.||.+.|.++
T Consensus        13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A   74 (74)
T PF03880_consen   13 LTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA   74 (74)
T ss_dssp             --HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred             CCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence            5788999999876 66653   3444443        899999887 6677887 4889999999988764

; PDB: 2G0C_A 3MOJ_B.

>KOG4210|consensus

Probab=84.00  E-value=0.56  Score=39.12  Aligned_cols=75  Identities=9%  Similarity=-0.133  Sum_probs=56.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCC-cCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKE-RIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~-~i~~RyIeV~~s  101 (141)
                      ..+.+.+.|++.+.++..|+...+... ...+........+.|+++|.|++.+.+..||..... .+..+-++....
T Consensus        90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~-~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~  165 (285)
T KOG4210|consen   90 TFFVGELSENIEESEDDNFSSEAGLRV-DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN  165 (285)
T ss_pred             cccccccccchhhccccccchhhcCcc-cchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence            346678888988888999998886442 244444336789999999999999999999998874 666666555444

>KOG0105|consensus

Probab=82.81  E-value=1.1  Score=36.08  Aligned_cols=72  Identities=19%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCC----ee
Q psy3067          21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGH----RY   95 (141)
Q Consensus        21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~----Ry   95 (141)
                      .+|+ -++++|||-+.+.+||++--..-+-|= -..+-.|       |.+-|+|...||.+-|+.+ +.+....    -|
T Consensus       113 rSe~-RVvVsGLp~SgSWQDLKDHmReaGdvC-fadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y  183 (241)
T KOG0105|consen  113 RSEY-RVVVSGLPPSGSWQDLKDHMREAGDVC-FADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY  183 (241)
T ss_pred             ccce-eEEEecCCCCCchHHHHHHHHhhCCee-eeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence            3455 788899999999999999988765331 0112223       5889999999999999984 5444432    25


Q ss_pred             EEEEec
Q psy3067          96 IFFTGH  101 (141)
Q Consensus        96 IeV~~s  101 (141)
                      |.|..-
T Consensus       184 irv~~~  189 (241)
T KOG0105|consen  184 IRVRGD  189 (241)
T ss_pred             EEeccc
Confidence            555544

>KOG1855|consensus

Probab=81.92  E-value=0.73  Score=40.87  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             eeEEEEEecHHH-HH--HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec---CCC--CCcc--------eeeEEEeC
Q psy3067          12 RYIEVFKVRRQE-MD--WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED---PFN--GRPT--------GEAYVQFV   75 (141)
Q Consensus        12 RyIEv~~~~~~d-~~--~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d---~~~--Gr~~--------G~afV~F~   75 (141)
                      |+|+.++....+ +.  -|+.-+||-+-.-+.|.+.|+.++.++ .|+|+.-   +.+  |.++        =.|+|+|.
T Consensus       216 rRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye  294 (484)
T KOG1855|consen  216 RRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYE  294 (484)
T ss_pred             eecCCCCCccccccccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhh
Confidence            445555543333 42  245569999988899999999998885 7998775   333  3333        35899999


Q ss_pred             CHHHHHHHHHHc
Q psy3067          76 DKETAELALQKH   87 (141)
Q Consensus        76 s~e~a~~AL~k~   87 (141)
                      ..+.|.+|-++.
T Consensus       295 ~~~~A~KA~e~~  306 (484)
T KOG1855|consen  295 EVEAARKARELL  306 (484)
T ss_pred             hhHHHHHHHHhh
Confidence            999999999865

>KOG1456|consensus

Probab=81.44  E-value=3.7  Score=36.22  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCC
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIG   92 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~   92 (141)
                      |.|-..||+.+.+.|...++...+|.+.-- ++.|+. .+.++|++.++|.+||.+ |.-.|.
T Consensus       413 NaP~~vtEe~l~~i~nek~v~~~svkvFp~-kserSs-sGllEfe~~s~Aveal~~~NH~pi~  473 (494)
T KOG1456|consen  413 NAPLGVTEEQLIGICNEKDVPPTSVKVFPL-KSERSS-SGLLEFENKSDAVEALMKLNHYPIE  473 (494)
T ss_pred             cCCCccCHHHHHHHhhhcCCCcceEEeecc-cccccc-cceeeeehHHHHHHHHHHhcccccc
Confidence            678889999999999998777656776554 455554 689999999999999985 555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
1wg5_A	104	Solution Structure Of The First Rrm Domain In Heter		2e-17
2hgm_A	126	Nmr Structure Of The Second Qrrm Domain Of Human Hn		2e-16
2dha_A	123	Solution Structure Of The Second Rna Recognition Mo		7e-06
1wel_A	124	Solution Structure Of Rna Binding Domain In Np_0060		1e-05
2lxu_A	108	Solution Nmr Structure Of The Eukaryotic Rna Recogn		3e-05
2db1_A	118	Solution Structure Of The Rna Binding Domain In Het		3e-05
2hgl_A	136	Nmr Structure Of The First Qrrm Domain Of Human Hnr		9e-05

>pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In Heterogeneous Nuclear Ribonucleoprotein H Length = 104

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 38  KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI- 96
           K++I QFF GLEI+ NG+TL  D F GR TGEA+VQF  +E AE AL+KHKERIGHRYI 
Sbjct: 29  KEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87
Query: 97  FFTGHRYTVQHRAP 110
            F   R  V+   P
Sbjct: 88  IFKSSRAEVRTSGP 101

>pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F Length = 126

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 38  KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           K++I QFF GLEI+ NGITL  DP  G+ TGEA+VQF  +E AE AL KHKERIGHRYI
Sbjct: 56  KEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 113

>pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In Hypothetical Protein Flj201171 Length = 123

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 54 GITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          GI  V  P +GRPTG+A+V F  +E A+ AL+KHK+ +G RYI
Sbjct: 56 GILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 97

>pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
          E +   +  FF  L+I+ + I +   P NG+ TGE +V+F ++   + AL +HK+ +G+R
Sbjct: 36 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNR 94
Query: 95 YI 96
          +I
Sbjct: 95 FI 96

>pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition Motif, Rrm1, From The Heterogeneous Nuclear Ribonucleoprotein H From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8614a Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 39 DDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          D++ +FF   +I  NG   +   +   GRP+GEA+V+   ++  +LAL+K +E +GHRY+
Sbjct: 22 DEVQRFFSDCKI-QNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 80

>pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In Heterogeneous Nuclear Ribonucleoprotein F Homolog Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 64  GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAPRCET 114
           GR +GEA+V+   ++  +LAL+K +E +GHRYI  F  HR    + ++H  P   +
Sbjct: 58  GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSAS 113

>pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 64  GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAP 110
           GR +GEA+V+   ++  ++AL+K +E +GHRYI  F  HR    + ++H  P
Sbjct: 85  GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGP 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	1e-20
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	6e-20
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	1e-19
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	5e-19
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	1e-18
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	2e-18
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	3e-18
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	3e-18
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	4e-18
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	3e-16
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	4e-16
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	4e-16
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	2e-15
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	3e-15
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	3e-07
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	2e-06
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	3e-06
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	1e-05
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	4e-05
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	5e-05
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	5e-05
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	8e-05
2div_A	99	TRNA selenocysteine associated protein; structural	1e-04
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	5e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	5e-04

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 80.2 bits (198), Expect = 1e-20
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
          K D+ QF +G+ +  N + ++ D  NG+  G+A VQF +++ A  + + H++++  R  F
Sbjct: 29 KMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 77.9 bits (192), Expect = 6e-20
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           K++I QFF GLEI+ NG+TL  D   GR TGEA+VQF  +E AE AL+KHKERIGHRYI
Sbjct: 28 SKEEIVQFFSGLEIVPNGMTLPVDF-QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 78.0 bits (192), Expect = 1e-19
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          +   +  FF  L+I+ + I +   P NG+ TGE +V+F ++   + AL +HK+ +G+R+I
Sbjct: 38 ENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96

Query: 97 F 97
           
Sbjct: 97 Q 97

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 76.1 bits (187), Expect = 5e-19
 Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 37  KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
            K++I QFF GLEI+ NGITL  DP  G+ TGEA+VQF  +E AE AL KHKERIGHRYI
Sbjct: 55  TKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 113

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 74.4 bits (183), Expect = 1e-18
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ++D+  FF GL +  + + L++D   GR  G   V+F+  +    AL++++  +  RY+
Sbjct: 29 MENDVRDFFHGLRV--DAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYV 85

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 73.5 bits (181), Expect = 2e-18
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
            D+I  FF G ++I   + L  +   G PTGEA V F  ++ A  A+   +   IG R 
Sbjct: 28 SIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86

Query: 96 I 96
          +
Sbjct: 87 V 87

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 73.1 bits (180), Expect = 3e-18
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
            D+I  FF G ++I   + L  +   G PTGEA V F  ++ A  A+   +   IG R 
Sbjct: 28 SIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86

Query: 96 I 96
          +
Sbjct: 87 V 87

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 73.2 bits (180), Expect = 3e-18
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           ++DI  FF  L  +   + +   P +GR TGEA V+F   E A  A+ K K  + HRY+
Sbjct: 28 TENDIYNFFSPLNPMR--VHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 72.7 bits (179), Expect = 4e-18
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           + ++ +F   L+ ++  I +V +  +G  TG  +V F ++E  + AL+ ++E +G RYI
Sbjct: 23 TEKNVMEFLAPLKPVA--IRIVRNA-HGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79

Query: 97 F 97
           
Sbjct: 80 E 80

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 37  KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
            ++DI  FF  L  +   + +   P +GR TGEA V+F   E A  A+ K +  + HRYI
Sbjct: 59  TENDIYNFFSPLNPVR--VHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 68.8 bits (168), Expect = 4e-16
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 37 KKDDIAQFFDGLEIISN---GITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGH 93
            +++  FF     I+    GI  V  P +GRPTG+A+V F  +E A+ AL+KHK+ +G 
Sbjct: 36 TAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94

Query: 94 RYI 96
          RYI
Sbjct: 95 RYI 97

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 68.0 bits (166), Expect = 4e-16
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 37 KKDDIAQFFDGLEIIS--NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
            +D+  FF    I +  NGI  + +  +G+  G+A ++   ++  + AL+KH+  +G R
Sbjct: 24 TMEDVLNFFSDCRIRNGENGIHFLLNR-DGKRRGDALIEMESEQDVQKALEKHRMYMGQR 82

Query: 95 YI 96
          Y+
Sbjct: 83 YV 84

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 66.9 bits (163), Expect = 2e-15
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 37 KKDDIAQFFDGLEIIS--NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
            +D+  F     I     G+  +     GR +GEA+V+   ++  +LAL+K +E +GHR
Sbjct: 30 SIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALKKDRESMGHR 88

Query: 95 YI 96
          YI
Sbjct: 89 YI 90

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score = 66.6 bits (162), Expect = 3e-15
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 37  KKDDIAQFFDGLEIISN--GITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
             +D+  F     I     G+  +     GR +GEA+V+   ++  ++AL+K +E +GHR
Sbjct: 57  SVEDVQNFLSDCTIHDGAAGVHFIYTR-EGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115

Query: 95  YI 96
           YI
Sbjct: 116 YI 117

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           DI   F  L I S  + LV D    +  G  YV+F + ++ + AL      +G R +
Sbjct: 30 GDIDAIFKDLSIRS--VRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFN-GRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          + I +FF GL I +  + L  +P N  R  G  Y +F D ++   AL  ++E +G+R I
Sbjct: 34 ESIKEFFRGLNISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRI 90

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFN-GRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
          + I +FF GL I +  + L  +P N  R  G  Y +F D ++   AL  ++E +G++ I
Sbjct: 30 ESIKEFFRGLNISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 39 DDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
           D+  FF  + ++    + ++ D  + R  G AYV+F + ++  LA+    +R+    I
Sbjct: 40 RDLEDFFSAVGKVRD--VRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 96

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
          +++   F G   ++  +T++ D F+G P G AY++F DKE+   +L 
Sbjct: 21 EELEAHFHGCGSVNR-VTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 38 KDDIAQFF-------DGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
           + +A +F          +     I L  D   G+  GEA V F D  +A+ A+ 
Sbjct: 27 IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 39 DDIAQFFDGLEIISNG-------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
          DD+A FF    ++          I +  D   G+P G+A V + D  TA+ A++
Sbjct: 30 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 38  KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
             D+   F     I+  IT++ D F+G P G AY++F ++ + + A+   +     R I
Sbjct: 50  AQDLEAHFSSCGSINR-ITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTI 107

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 39 DDIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86
          + I++ F   G  ++S  + ++ +   G P G  +V+F D  TAE  L K
Sbjct: 24 NFISRAFATMGETVMS--VKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 38 KDDIAQFFDGLEIISNG-------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
           + +A +F  + II          I L  D   G+  GEA V F D  +A+ A+ 
Sbjct: 21 IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 75

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 38  KDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
           +    +       +      LV     G+  G  + +++ K++A  A      + +G R 
Sbjct: 109 QQQFEELVRPFGSLER--CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166

Query: 96  IF 97
           ++
Sbjct: 167 LY 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.84
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.84
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.83
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.83
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.83
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.81
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.8
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.79
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.79
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.78
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.76
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.76
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.75
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.75
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.75
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.73
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.72
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.72
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.72
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.72
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.72
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.72
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.72
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.71
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.71
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.7
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.7
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.7
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.7
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.7
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.7
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.69
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.68
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.68
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.68
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.68
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.68
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.68
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.68
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.68
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.68
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.67
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.67
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.67
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.67
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.67
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.67
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.67
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.67
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.67
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.67
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.67
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.66
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.66
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.66
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.66
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.66
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.66
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.66
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.66
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.66
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.65
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.65
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.65
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.65
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.65
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.64
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.64
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.64
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.64
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.64
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.64
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.63
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.63
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.63
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.63
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.63
2div_A	99	TRNA selenocysteine associated protein; structural	99.63
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.63
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.63
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.63
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.63
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.63
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.62
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.62
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.62
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.62
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.62
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.61
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.61
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.61
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.61
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.61
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.61
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.61
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.61
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.6
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.6
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.6
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.6
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.6
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.6
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.6
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.58
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.58
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.57
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.57
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.35
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.57
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.56
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.56
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.56
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.56
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.55
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.55
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.55
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.55
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.55
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.55
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.55
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.54
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.53
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.53
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.53
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.53
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.53
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.53
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.52
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.52
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.52
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.52
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.51
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.5
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.5
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.5
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.49
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.49
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.49
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.49
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.48
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.48
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.48
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.48
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.48
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.48
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.46
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.46
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.45
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.45
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.45
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.45
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.45
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.44
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.44
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.44
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.44
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.43
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.43
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.43
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.42
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.42
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.42
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.42
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.42
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.41
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.41
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.41
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.41
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.4
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.4
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.39
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.39
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.39
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.38
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.38
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.37
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.37
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.37
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.37
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.37
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.3
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.29
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.28
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.27
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.27
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.25
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.24
1x5p_A	97	Negative elongation factor E; structure genomics,	99.24
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.23
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.23
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.22
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.2
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.19
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.17
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.17
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.16
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.15
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.12
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.11
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.1
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.04
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.94
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.93
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.72
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.7
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.45
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.37
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.17
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	97.51
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	97.15
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	96.38
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	96.19
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	95.8
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	95.65
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	95.06
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	94.76
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	87.78
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	80.27

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=5.4e-22  Score=144.09  Aligned_cols=82  Identities=30%  Similarity=0.424  Sum_probs=74.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCccc---ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIIS---NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~---~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .|+++||||++|++||++||+.++.|.   .+|+|+.| .+|+++|+|||+|.++++|++||++|++.|++|+|+|.+++
T Consensus        25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~  103 (123)
T 2dha_A           25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST  103 (123)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence            367789999999999999999997541   47999999 79999999999999999999999999999999999999998


Q ss_pred             hhhccc
Q psy3067         103 YTVQHR  108 (141)
Q Consensus       103 ~~~~~~  108 (141)
                      ..++..
T Consensus       104 ~~e~~~  109 (123)
T 2dha_A          104 AAEVQQ  109 (123)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.5e-21  Score=138.78  Aligned_cols=80  Identities=21%  Similarity=0.339  Sum_probs=73.4

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ..++++||||++|++||++||+.|+|.  +|+|+.| .+|+++|+|||+|.++++|++||++|++.|++|+|+|.+++..
T Consensus        17 ~~v~V~nLp~~~te~dl~~~F~~~~v~--~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~   93 (109)
T 2dnn_A           17 LYVSVHGMPFSAMENDVRDFFHGLRVD--AVHLLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER   93 (109)
T ss_dssp             HEEEEECCCSSCCHHHHHHHTTTSCCC--EEEECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred             CEEEEeCCCCCCCHHHHHHHhccCCee--EEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence            368899999999999999999999765  5999999 6799999999999999999999999999999999999999875


Q ss_pred             hcc
Q psy3067         105 VQH  107 (141)
Q Consensus       105 ~~~  107 (141)
                      +..
T Consensus        94 ~~~   96 (109)
T 2dnn_A           94 QWV   96 (109)
T ss_dssp             HHH
T ss_pred             chh
Confidence            543

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=2.6e-21  Score=134.55  Aligned_cols=82  Identities=49%  Similarity=0.702  Sum_probs=75.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++||||++|++||++||+.++.+.+.|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus        17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~   95 (104)
T 1wg5_A           17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence            46789999999999999999999988655999999 89999999999999999999999999999999999999998766


Q ss_pred             ccc
Q psy3067         106 QHR  108 (141)
Q Consensus       106 ~~~  108 (141)
                      +..
T Consensus        96 ~~~   98 (104)
T 1wg5_A           96 VRT   98 (104)
T ss_dssp             SCC
T ss_pred             HHH
Confidence            543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.83  E-value=8.1e-22  Score=144.06  Aligned_cols=81  Identities=48%  Similarity=0.634  Sum_probs=74.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++||||++|++||++||+.|+|+.++|+|+.| .+|+++|+|||+|.++++|++||++++..|++|+|+|.+++..+
T Consensus        44 ~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d-~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~e  122 (126)
T 2hgm_A           44 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD-PEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE  122 (126)
T ss_dssp             EEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCC-SSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHHH
Confidence            46789999999999999999999988446999999 56999999999999999999999999999999999999998876


Q ss_pred             cc
Q psy3067         106 QH  107 (141)
Q Consensus       106 ~~  107 (141)
                      +.
T Consensus       123 ~~  124 (126)
T 2hgm_A          123 VR  124 (126)
T ss_dssp             HC
T ss_pred             hh
Confidence            54

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=3.8e-21  Score=134.23  Aligned_cols=77  Identities=27%  Similarity=0.323  Sum_probs=71.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++||||++|++||++||+.++++  .|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus        17 ~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~   93 (102)
T 1wez_A           17 CVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence            46778999999999999999999977  5999999 59999999999999999999999999999999999999988744

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.81  E-value=2.5e-20  Score=132.80  Aligned_cols=80  Identities=26%  Similarity=0.415  Sum_probs=73.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||++||+.|+.   + ..|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus        19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v-~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~   96 (118)
T 2db1_A           19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGV-AGVHFIYT-REGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH   96 (118)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCBTTGG-GGEEEEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCccCc-eeEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            4678999999999999999999987   5 37999999 56999999999999999999999999999999999999998


Q ss_pred             hhhcc
Q psy3067         103 YTVQH  107 (141)
Q Consensus       103 ~~~~~  107 (141)
                      ..+++
T Consensus        97 ~~~~~  101 (118)
T 2db1_A           97 RTEMD  101 (118)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76643

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.80  E-value=3.3e-20  Score=136.74  Aligned_cols=80  Identities=25%  Similarity=0.390  Sum_probs=73.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||++||+.|+.   + .+|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus        46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v-~~v~i~~d-~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~  123 (136)
T 2hgl_A           46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGA-AGVHFIYT-REGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH  123 (136)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCCSSSS-TTEEEEEC-SSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcCce-eEEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence            4788999999999999999999987   5 47999999 56999999999999999999999999999999999999998


Q ss_pred             hhhcc
Q psy3067         103 YTVQH  107 (141)
Q Consensus       103 ~~~~~  107 (141)
                      ..++.
T Consensus       124 ~~e~~  128 (136)
T 2hgl_A          124 RTEMD  128 (136)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            76654

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.79  E-value=1.8e-20  Score=130.88  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||++||+.|+.   + .+|+|+.| ..|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus        13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v-~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~   90 (107)
T 2lmi_A           13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGE-NGIHFLLN-RDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN   90 (107)
T ss_dssp             EEEEECCCSSCCSHHHHHHTTTSCBTTTT-TTEECCCC-TTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcCCc-ceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence            4678999999999999999999987   5 37999999 55999999999999999999999999999999999999998


Q ss_pred             hhhcc
Q psy3067         103 YTVQH  107 (141)
Q Consensus       103 ~~~~~  107 (141)
                      ..++.
T Consensus        91 ~~~~~   95 (107)
T 2lmi_A           91 NEDVD   95 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=7.1e-20  Score=129.13  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=74.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .|+++||||++|++||++||+.|+++..+|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++..+
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           17 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-NNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-TTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred             EEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence            46789999999999999999999988447999999 59999999999999999999999999999999999999998765


Q ss_pred             cc
Q psy3067         106 QH  107 (141)
Q Consensus       106 ~~  107 (141)
                      ..
T Consensus        96 ~~   97 (114)
T 2cpy_A           96 MR   97 (114)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.78  E-value=4e-20  Score=136.86  Aligned_cols=78  Identities=28%  Similarity=0.335  Sum_probs=71.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .|+++||||++|++||++||+.|+++  .|+|++| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus        48 ~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d-~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~  124 (139)
T 2hgn_A           48 CVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIG-PDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG  124 (139)
T ss_dssp             CEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCS-SSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEEC-CCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence            46889999999999999999999976  5999999 56999999999999999999999889999999999999988744


Q ss_pred             c
Q psy3067         106 Q  106 (141)
Q Consensus       106 ~  106 (141)
                      .
T Consensus       125 ~  125 (139)
T 2hgn_A          125 A  125 (139)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=6.9e-19  Score=118.59  Aligned_cols=75  Identities=23%  Similarity=0.367  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||++||+.++|.  .|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++.
T Consensus        12 ~l~v~nLp~~~t~~~l~~~F~~~~i~--~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           12 TVKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTSCCS--EEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred             EEEEECCCCCCCHHHHHHHHhhCCce--EEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence            35778999999999999999999665  5999999 899999999999999999999999999999999999999876

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=4e-19  Score=126.72  Aligned_cols=79  Identities=25%  Similarity=0.414  Sum_probs=71.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++||||++|++||++||+.|+.+.+.+.+..+ .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++..+
T Consensus        27 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~  105 (124)
T 1wel_A           27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG  105 (124)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-CCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence            57889999999999999999999888543555555 89999999999999999999999999999999999999998755

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=120.44  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=70.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+.+
T Consensus        21 ~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           21 NLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            368899999999999999999997663 69999998889999999999999999999997 699999999999987754

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.75  E-value=2.6e-19  Score=122.17  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=68.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|||+++||+||+++|+.+| .+ .+|+|+.|+.+|+++|+|||+|.++++|++||+.  |+..++||.|.|..+.+
T Consensus         4 i~v~nLp~~~te~~l~~~F~~~G~~v-~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~   82 (91)
T 2lxi_A            4 VMLRMLPQAATEDDIRGQLQSHGVQA-REVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP   82 (91)
T ss_dssp             EEEETCCSSCCHHHHHHHHHHHTCCC-SBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCEe-EEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence            56799999999999999999997 45 3699999988999999999999999999999984  45579999999998865


Q ss_pred             h
Q psy3067         104 T  104 (141)
Q Consensus       104 ~  104 (141)
                      .
T Consensus        83 ~   83 (91)
T 2lxi_A           83 K   83 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.75  E-value=4.3e-19  Score=123.15  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC----cCCCee
Q psy3067          22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE----RIGHRY   95 (141)
Q Consensus        22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~----~i~~Ry   95 (141)
                      +.|+.++++|||+++|++||+++|+.++.+ -.+|+++.|+.+|+++|+|||+|.++++|++|++ .|+.    .|+||.
T Consensus         7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~   86 (95)
T 2lkz_A            7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT   86 (95)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred             CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence            344557778999999999999999999732 1469999998899999999999999999999998 4665    589999


Q ss_pred             EEEEecc
Q psy3067          96 IFFTGHR  102 (141)
Q Consensus        96 IeV~~ss  102 (141)
                      |.|..|.
T Consensus        87 i~V~~Ak   93 (95)
T 2lkz_A           87 IGVDFAK   93 (95)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9998774

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.73  E-value=2.5e-18  Score=116.18  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||+++|+.++  -+ .+|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v-~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCC-CCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCce-EEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            467899999999999999999999  45 369999998899999999999999999999996 79999999999999887


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        82 ~   82 (90)
T 3p5t_L           82 K   82 (90)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.72  E-value=6.3e-18  Score=112.78  Aligned_cols=75  Identities=21%  Similarity=0.295  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++.++..|+||.|.|..+
T Consensus        13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           13 KMFVGGLSWDTSKKDLKDYFTKFGEVV-DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            467899999999999999999997774 699999978899999999999999999999999888999999999754

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.72  E-value=2.2e-18  Score=112.13  Aligned_cols=74  Identities=16%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++.+|||+++|++||+++|+.++.+. .|.++.++.+|+++|+|||+|.++++|++|+++|+..++||.|.|..+
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCS-EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            45689999999999999999998773 699999977899999999999999999999999999999999998753

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=7e-18  Score=116.17  Aligned_cols=77  Identities=21%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++|.  .|.|+.|+.+|+++|+|||+|.++++|++||++|+..|++|.|.|..+...
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~gi~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dng_A           17 TAYVGNLPFNTVQGDIDAIFKDLSIR--SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR   93 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCce--EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence            45778999999999999999999965  499999977899999999999999999999988999999999999988763

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.72  E-value=7e-18  Score=114.03  Aligned_cols=76  Identities=28%  Similarity=0.375  Sum_probs=69.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..++
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           17 VIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            367789999999999999999998774 57888877899999999999999999999998 69999999999999875

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.72  E-value=1.2e-17  Score=110.11  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++|||+++|++||+++|+.++.+. +|.++.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+...
T Consensus         4 l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A            4 LFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            46789999999999999999997763 69999998899999999999999999999999 6999999999999988764

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.72  E-value=1.6e-17  Score=117.42  Aligned_cols=77  Identities=10%  Similarity=0.005  Sum_probs=71.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++|||+++|++||+++|+.++.+. +|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus         9 lfV~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A            9 VTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             EEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            57789999999999999999998773 69999998889999999999999999999998 6999999999999998653

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.72  E-value=7.2e-18  Score=119.14  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=67.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      |+++|||+++|++||+++|+.|+.|. +|+|+.| . ++++|+|||+|.++++|++|++ +|+..|+||.|.|..+....
T Consensus         8 lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d-~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~   84 (115)
T 4f25_A            8 IFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCD-E-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK   84 (115)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-T-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred             EEECCCCCCCCHHHHHHHHhccCCEE-EEEEeec-C-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence            67899999999999999999998773 6999998 3 5689999999999999999997 69999999999999876422


Q ss_pred             ccc------C----CCCCCCCcccCCCC
Q psy3067         106 QHR------A----PRCETSIPVSSSTH  123 (141)
Q Consensus       106 ~~~------~----~~~~~~lp~~~~~~  123 (141)
                      ...      .    .-++.+||.+.|++
T Consensus        85 ~~~~~~~~~~~~~~~lyv~Nl~~~~T~~  112 (115)
T 4f25_A           85 EREAELGARAKEFTNVYIKNFGPGSTRA  112 (115)
T ss_dssp             C---------------------------
T ss_pred             ccccccccccCCCCceEeCCCCCCcccc
Confidence            111      1    12356888777765

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=113.84  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++||++|+..+++|.|.|..+....
T Consensus        12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~   90 (99)
T 2dgs_A           12 KIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRD   90 (99)
T ss_dssp             EEEEESCCSSCCHHHHHHHHSSSSCEE-EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence            467789999999999999999997773 6999999788999999999999999999999999999999999999987633

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.71  E-value=9.6e-18  Score=111.91  Aligned_cols=77  Identities=23%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.++++|++|+.+|+..+++|.|.|..+..
T Consensus         8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A            8 SIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGCCEE-EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence            467799999999999999999997774 69999997799999999999999999999998899999999999998865

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=1.5e-17  Score=114.68  Aligned_cols=77  Identities=25%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC-CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN-GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~-Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++|.  .|.|+.|+.+ |+++|+|||+|.++++|++||.+|+..|++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~Gi~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           17 TAFLGNLPYDVTEESIKEFFRGLNIS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHTTTSCEE--EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHCCce--EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence            46778999999999999999999943  5999999666 99999999999999999999988999999999999998763

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.70  E-value=3.4e-17  Score=112.00  Aligned_cols=76  Identities=22%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCccccc--------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNG--------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYI   96 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~--------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyI   96 (141)
                      .++++|||+++|++||+++|+.++.+. .        |.++.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|
T Consensus        15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l   93 (99)
T 2la6_A           15 TIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI   93 (99)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTTSCBC-EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCEe-eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence            356789999999999999999998774 5        9999998889999999999999999999998 79999999999


Q ss_pred             EEEecc
Q psy3067          97 FFTGHR  102 (141)
Q Consensus        97 eV~~ss  102 (141)
                      .|..++
T Consensus        94 ~V~~A~   99 (99)
T 2la6_A           94 KVSFAT   99 (99)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998763

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.70  E-value=3.4e-18  Score=111.00  Aligned_cols=74  Identities=15%  Similarity=0.243  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++.+|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++.++..++||.|.|..+
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHSCCS-EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            35689999999999999999998773 699999978899999999999999999999999999999999988754

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.70  E-value=1.9e-17  Score=112.64  Aligned_cols=77  Identities=26%  Similarity=0.301  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..++.
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           17 IIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            357789999999999999999998774 57777777899999999999999999999996 699999999999998754

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=1.2e-17  Score=116.95  Aligned_cols=76  Identities=12%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.+|.+. +|+|+.| ..|+++|+|||+|.++++|++||+.++..++||.|.|..+..
T Consensus        13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~-~v~i~~d-~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           13 SVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTSSCEE-EEEEECC-CTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcCCEE-EEEEEEC-CCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence            567899999999999999999998773 7999999 459999999999999999999999999999999999997753

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.70  E-value=3.2e-17  Score=108.94  Aligned_cols=76  Identities=26%  Similarity=0.219  Sum_probs=69.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus         9 l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   85 (87)
T 3bs9_A            9 VFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   85 (87)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence            56789999999999999999997663 69999997799999999999999999999998 699999999999988764

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=3.5e-17  Score=110.74  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=71.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccE-EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI-TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I-~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++|||+++|++||+++|+.++.+. .| +|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus         8 l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   86 (96)
T 1x5t_A            8 IFIGNLDPEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK   86 (96)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBS-SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence            56789999999999999999998774 58 999998899999999999999999999999 7999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        87 ~   87 (96)
T 1x5t_A           87 D   87 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=4.8e-17  Score=110.82  Aligned_cols=79  Identities=16%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   88 (99)
T 1whw_A           10 RLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            357789999999999999999997763 69999996699999999999999999999995 7999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        89 ~   89 (99)
T 1whw_A           89 K   89 (99)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.7e-17  Score=114.40  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.|+..|++|.|.|..+....
T Consensus        18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~   96 (105)
T 2dh8_A           18 KLFVGGLDWSTTQETLRSYFSQYGEVV-DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRG   96 (105)
T ss_dssp             EECCBSCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCC
Confidence            567899999999999999999997763 6999999889999999999999999999999999999999999999887633

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=7.1e-17  Score=110.90  Aligned_cols=78  Identities=19%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   95 (103)
T 2cq0_A           17 TIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   95 (103)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence            467789999999999999999997773 69999997799999999999999999999999 6999999999999988763

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.68  E-value=1.7e-17  Score=123.42  Aligned_cols=102  Identities=13%  Similarity=0.187  Sum_probs=82.9

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      ...++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.++..+++|.|.|..+..
T Consensus        13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~   91 (196)
T 1l3k_A           13 LRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS   91 (196)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence            34578899999999999999999997663 69999997889999999999999999999999999999999999998865


Q ss_pred             hhcccCC--------CCCCCCcccCCCCCCC
Q psy3067         104 TVQHRAP--------RCETSIPVSSSTHKPG  126 (141)
Q Consensus       104 ~~~~~~~--------~~~~~lp~~~~~~~~~  126 (141)
                      ......+        =++.+||.+.+.+.++
T Consensus        92 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~  122 (196)
T 1l3k_A           92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLR  122 (196)
T ss_dssp             -----------CCSEEEEECCTTTCCHHHHH
T ss_pred             cccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence            3322111        1156899888776554

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=4.6e-17  Score=114.21  Aligned_cols=79  Identities=13%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ..|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+.|+..|++|.|.|..+...
T Consensus        28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           28 RKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence            3478899999999999999999997663 699999988899999999999999999999999999999999999988763

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=6.8e-17  Score=108.94  Aligned_cols=76  Identities=20%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..++
T Consensus        17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           17 CLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            467789999999999999999997763 69999997889999999999999999999999 69999999999998765

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=114.45  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=69.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecC-CCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP-FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~-~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++ + ..|+|+.|+ .+|+++|+|||+|.+.++|++|+++|+..++||.|.|..+..
T Consensus        21 ~l~V~nLp~~~t~~~l~~~F~~~G-i-~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           21 TAFLGNLPYDVTEESIKEFFRGLN-I-SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             EEEESCCSSCCSSSHHHHHSCSSC-E-EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC-C-eEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence            357799999999999999999999 5 369999995 489999999999999999999998899999999999998765

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=7.9e-17  Score=110.66  Aligned_cols=78  Identities=14%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +.+.|++|.|.|..+....
T Consensus        17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~   94 (103)
T 2cqg_A           17 DLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQ   94 (103)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTC
T ss_pred             EEEEEcCCCcCCHHHHHHHHHhcCCeE-EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCC
Confidence            467789999999999999999997663 69999997789999999999999999999999 5778999999999987643

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=2.6e-17  Score=107.04  Aligned_cols=74  Identities=14%  Similarity=0.265  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++.+|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++.....++||.|.|..+
T Consensus         3 l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a   76 (77)
T 1uaw_A            3 MFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCC-CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence            45689999999999999999998773 799999977899999999999999999999996449999999998764

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.67  E-value=1.1e-16  Score=111.91  Aligned_cols=80  Identities=25%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++|++||+++|+.|+.+. .|+|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   95 (115)
T 2dgo_A           17 HVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   95 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            467789999999999999999997663 69999997799999999999999999999998 6999999999999998764


Q ss_pred             hc
Q psy3067         105 VQ  106 (141)
Q Consensus       105 ~~  106 (141)
                      ..
T Consensus        96 ~~   97 (115)
T 2dgo_A           96 PP   97 (115)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=5.9e-17  Score=111.45  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=72.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   95 (105)
T 1x5u_A           17 TVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   95 (105)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            467889999999999999999997663 69999997799999999999999999999999 5999999999999998764


Q ss_pred             hc
Q psy3067         105 VQ  106 (141)
Q Consensus       105 ~~  106 (141)
                      ..
T Consensus        96 ~~   97 (105)
T 1x5u_A           96 NK   97 (105)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.67  E-value=4.9e-17  Score=107.60  Aligned_cols=75  Identities=19%  Similarity=0.055  Sum_probs=68.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+
T Consensus         9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   84 (85)
T 3mdf_A            9 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   84 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHhccCCEE-EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            356789999999999999999997663 69999998899999999999999999999996 6999999999999865

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.67  E-value=9.3e-17  Score=119.48  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CcCCCCceeEEEEEecHHHH----------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEe
Q psy3067           5 RTGEVSDRYIEVFKVRRQEM----------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQF   74 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~----------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F   74 (141)
                      +.+.|+.|.|.|-.+...+.          ..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|
T Consensus        75 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F  153 (196)
T 1l3k_A           75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTF  153 (196)
T ss_dssp             CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEE
T ss_pred             CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCCCCccceEEEEE
Confidence            45668889999888755432          1367789999999999999999998763 699999977999999999999


Q ss_pred             CCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067          75 VDKETAELALQKHKERIGHRYIFFTGHRYTVQ  106 (141)
Q Consensus        75 ~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~  106 (141)
                      .+.++|.+||+.++..|+||.|.|..+...+.
T Consensus       154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~  185 (196)
T 1l3k_A          154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE  185 (196)
T ss_dssp             SSHHHHHHHHHCSCCEETTEECEEEECC----
T ss_pred             CCHHHHHHHHHhCCcEECCEEEEEEecCChhH
Confidence            99999999999999999999999999876443

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1e-16  Score=108.29  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=70.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus         8 l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   84 (95)
T 2dnz_A            8 LYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE   84 (95)
T ss_dssp             EEEESCCTTCCHHHHHHHHTTTSCEE-EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence            56789999999999999999997663 69999997789999999999999999999999 799999999999998866

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=5.1e-17  Score=111.26  Aligned_cols=79  Identities=18%  Similarity=0.040  Sum_probs=71.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2cqb_A           14 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM   92 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHhhccCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence            467789999999999999999997773 69999998889999999999999999999997 6999999999999988764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        93 ~   93 (102)
T 2cqb_A           93 R   93 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.67  E-value=1.8e-17  Score=114.43  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             HHHHhcCCC------CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC-eeEE
Q psy3067          26 WKLQHTGIV------EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH-RYIF   97 (141)
Q Consensus        26 ~~~~~gLp~------s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~-RyIe   97 (141)
                      .++++|||+      ++++++|+++|+.++.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++ |.|.
T Consensus         8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~   86 (100)
T 3ns6_A            8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV-NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF   86 (100)
T ss_dssp             EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred             EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence            367899999      999999999999998763 69999997789999999999999999999997 79999999 9999


Q ss_pred             EEecchhhc
Q psy3067          98 FTGHRYTVQ  106 (141)
Q Consensus        98 V~~ss~~~~  106 (141)
                      |..+...++
T Consensus        87 V~~a~~~~~   95 (100)
T 3ns6_A           87 LYTMKDVER   95 (100)
T ss_dssp             EEESHHHHH
T ss_pred             EEECchhhh
Confidence            999876443

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=3.5e-17  Score=114.50  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=72.6

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ..|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||.+|+..|++|.|.|..+...
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~  104 (114)
T 2cq4_A           26 RTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE  104 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhCCCEe-EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence            3578899999999999999999997663 699999977899999999999999999999988999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus       105 ~  105 (114)
T 2cq4_A          105 K  105 (114)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=109.17  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.| .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus        19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           19 KLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTN-RAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEEC-CCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            467789999999999999999998663 6999999 599999999999999999999996 699999999999998865

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.67  E-value=7.6e-17  Score=113.03  Aligned_cols=77  Identities=13%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++..+..++||.|.|..+..
T Consensus        27 ~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~  103 (109)
T 2rs2_A           27 KMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP  103 (109)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHccCCeE-EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence            467899999999999999999998773 69999997789999999999999999999999877999999999998865

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.67  E-value=7.4e-17  Score=108.94  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..++
T Consensus        18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           18 TVFVGNLEARVREEILYELFLQAGPLT-KVTICKD-REGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEEC-TTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            577899999999999999999997774 6999999 569999999999999999999999 79999999999998764

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.66  E-value=9e-17  Score=120.14  Aligned_cols=77  Identities=10%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss  102 (141)
                      .|+++||||++|++||+++|+.|+  .+ .+|.|+.|+.+|+++|+|||+|.+.++|++||+. |+..|+||.|.|..+.
T Consensus        57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v-~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~  135 (156)
T 3n9u_C           57 AVYVGSFSWWTTDQQLIQVIRSIGVYDV-VELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT  135 (156)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCccE-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence            578899999999999999999999  45 3699999988999999999999999999999996 9999999999999997


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus       136 ~  136 (156)
T 3n9u_C          136 R  136 (156)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.66  E-value=9.1e-17  Score=109.26  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=70.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+....
T Consensus         5 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   83 (96)
T 2x1f_A            5 VYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD   83 (96)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence            46789999999999999999998773 69999997789999999999999999999997 69999999999999987643

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.1e-16  Score=107.98  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+
T Consensus        18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           18 TVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             SEEEESCCTTSCHHHHHHHTTTTSCEE-EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            467789999999999999999997773 69999997789999999999999999999997 6999999999999865

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=6.7e-17  Score=110.64  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus        14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   92 (102)
T 1x5s_A           14 KLFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   92 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            467789999999999999999997773 69999997899999999999999999999996 6999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        93 ~   93 (102)
T 1x5s_A           93 S   93 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=5.2e-17  Score=111.57  Aligned_cols=77  Identities=18%  Similarity=0.256  Sum_probs=71.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dnm_A           15 TLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY   92 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence            467889999999999999999997663 69999997789999999999999999999999 799999999999999876

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=1e-16  Score=111.81  Aligned_cols=79  Identities=22%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccc-------cEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISN-------GITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF   97 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~-------~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe   97 (141)
                      .++++|||+++|++||+++|+.++.+..       .|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   96 (113)
T 2cpe_A           17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK   96 (113)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence            4678899999999999999999987742       59999998899999999999999999999998 699999999999


Q ss_pred             EEecchh
Q psy3067          98 FTGHRYT  104 (141)
Q Consensus        98 V~~ss~~  104 (141)
                      |..+...
T Consensus        97 V~~a~~~  103 (113)
T 2cpe_A           97 VSLARKK  103 (113)
T ss_dssp             EECSSCC
T ss_pred             EEECCCC
Confidence            9988763

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.66  E-value=1.1e-16  Score=110.82  Aligned_cols=78  Identities=13%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc------CCcCCCeeEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH------KERIGHRYIFF   98 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~------~~~i~~RyIeV   98 (141)
                      .++++|||+++|++||+++|+.++.+ ..|+|+.|+.+|+++|+|||+|.+.++|++||+ .|      +..+++|.|.|
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v   95 (111)
T 1x4h_A           17 TVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV   95 (111)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence            46789999999999999999999876 369999998889999999999999999999998 57      89999999999


Q ss_pred             Eecchh
Q psy3067          99 TGHRYT  104 (141)
Q Consensus        99 ~~ss~~  104 (141)
                      ..+...
T Consensus        96 ~~a~~~  101 (111)
T 1x4h_A           96 DLAVTR  101 (111)
T ss_dssp             ECCCCC
T ss_pred             EECCCC
Confidence            988763

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.66  E-value=1.2e-16  Score=111.85  Aligned_cols=78  Identities=15%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.|+.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~  105 (115)
T 2cpz_A           27 NLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK  105 (115)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            567899999999999999999997663 69999997799999999999999999999996 6999999999999988763

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=1.6e-16  Score=109.48  Aligned_cols=76  Identities=18%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        26 l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           26 LFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             EEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             EEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            67889999999999999999997773 69999998889999999999999999999998 699999999999988764

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.65  E-value=1.8e-16  Score=109.41  Aligned_cols=75  Identities=20%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+ ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..++
T Consensus        31 ~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           31 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            36778999999999999999999777 36999999 599999999999999999999999 69999999999998764

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=1.3e-16  Score=109.30  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=72.0

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ..++++|||+++|++||+++|+.++.+. .|.|+.++.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus         9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   87 (104)
T 1p1t_A            9 RSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             SCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             cEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence            3578899999999999999999997663 69999997799999999999999999999997 799999999999999875


Q ss_pred             h
Q psy3067         104 T  104 (141)
Q Consensus       104 ~  104 (141)
                      .
T Consensus        88 ~   88 (104)
T 1p1t_A           88 E   88 (104)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.65  E-value=1.1e-16  Score=113.33  Aligned_cols=77  Identities=22%  Similarity=0.325  Sum_probs=70.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|+++|+..++||.|.|..+..
T Consensus        38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~  114 (124)
T 2jwn_A           38 SVYVGNVDYGSTAQDLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT  114 (124)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHTTSCEE-EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence            367799999999999999999997663 69999997899999999999999999999998899999999999998764

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.65  E-value=1e-16  Score=115.78  Aligned_cols=99  Identities=16%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. +|.++.++.+|+++|+|||+|.++++|++|++ .|+..+++|.|.|..+....
T Consensus         5 l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~   83 (167)
T 1fxl_A            5 LIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS   83 (167)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             EEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence            46789999999999999999998774 69999996699999999999999999999998 69999999999999887533


Q ss_pred             cccCC--CCCCCCcccCCCCCCC
Q psy3067         106 QHRAP--RCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~~~~~--~~~~~lp~~~~~~~~~  126 (141)
                      .....  =++.+||.+.+.+.++
T Consensus        84 ~~~~~~~l~v~nl~~~~t~~~l~  106 (167)
T 1fxl_A           84 ASIRDANLYVSGLPKTMTQKELE  106 (167)
T ss_dssp             GGGTTCEEEEESCCTTCCHHHHH
T ss_pred             ccCCCCcEEECCCCCcCCHHHHH
Confidence            22221  2256888777665443

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=110.60  Aligned_cols=77  Identities=21%  Similarity=0.212  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.++.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+..
T Consensus        28 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  105 (108)
T 2jrs_A           28 RLYVGSLHFNITEDMLRGIFEPFGRIE-SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE  105 (108)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTTSCEE-EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence            357789999999999999999998773 69999998889999999999999999999997 799999999999998764

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=1.3e-16  Score=108.52  Aligned_cols=78  Identities=12%  Similarity=0.079  Sum_probs=69.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCC---CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPF---NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~---~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.   +|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   85 (98)
T 2cpf_A            7 GLFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   85 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence            356789999999999999999997663 699998854   55999999999999999999999 5999999999999988


Q ss_pred             chh
Q psy3067         102 RYT  104 (141)
Q Consensus       102 s~~  104 (141)
                      ...
T Consensus        86 ~~~   88 (98)
T 2cpf_A           86 ERA   88 (98)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            763

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.64  E-value=1.7e-16  Score=110.21  Aligned_cols=77  Identities=21%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           28 ILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            367889999999999999999997773 69999997899999999999999999999998 799999999999998865

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.64  E-value=4.7e-16  Score=106.93  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC---eeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH---RYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~---RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+.+   |.|.|..+
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a   94 (105)
T 2dnh_A           17 KLFVGMLNKQQSEEDVLRLFQPFGVID-ECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA   94 (105)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence            467789999999999999999997663 6999999 599999999999999999999998 69988887   99999988


Q ss_pred             chh
Q psy3067         102 RYT  104 (141)
Q Consensus       102 s~~  104 (141)
                      ...
T Consensus        95 ~~~   97 (105)
T 2dnh_A           95 DTD   97 (105)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            763

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=2.1e-16  Score=110.85  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++||+.....+++|.|.|..+...
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~   96 (116)
T 2cqd_A           19 KIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   96 (116)
T ss_dssp             EEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCee-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence            467889999999999999999997663 699999978899999999999999999999996434899999999998653

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.64  E-value=7e-17  Score=124.02  Aligned_cols=100  Identities=17%  Similarity=0.058  Sum_probs=83.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++||+||+++|+.++.|. +|+|+.|+.+|+++|+|||+|.+.++|++||+ .|+..+.+|.|.+..+...
T Consensus        17 tlfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~   95 (213)
T 4f02_A           17 SLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD   95 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence            378899999999999999999997763 69999998899999999999999999999998 5999999999999988653


Q ss_pred             hccc--C--CCCCCCCcccCCCCCCC
Q psy3067         105 VQHR--A--PRCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 ~~~~--~--~~~~~~lp~~~~~~~~~  126 (141)
                      ....  .  .=++.+||++.+.+.|.
T Consensus        96 ~~~~~~~~~~l~v~nl~~~~t~~~l~  121 (213)
T 4f02_A           96 PSLRKSGVGNIFIKNLDKSIDNKALY  121 (213)
T ss_dssp             THHHHHCTTEEEEESCCTTCCHHHHH
T ss_pred             ccccccccccceECCcccccHHHHHH
Confidence            3221  1  12367899887776554

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.64  E-value=8.2e-17  Score=116.85  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. +|.++.++.+|+++|+|||+|.++++|++|++ .|+..+++|.|.|..+....
T Consensus         6 l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~   84 (168)
T 1b7f_A            6 LIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG   84 (168)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence            56789999999999999999998773 69999997799999999999999999999997 79999999999999887633


Q ss_pred             cccCCC--CCCCCcccCCCCCCC
Q psy3067         106 QHRAPR--CETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~~~~~~--~~~~lp~~~~~~~~~  126 (141)
                      ......  ++.+||.+.+.+.++
T Consensus        85 ~~~~~~~l~v~nl~~~~t~~~l~  107 (168)
T 1b7f_A           85 ESIKDTNLYVTNLPRTITDDQLD  107 (168)
T ss_dssp             STTTTCEEEEESCCTTCCHHHHH
T ss_pred             ccCCCCCEEEeCCCCCCCHHHHH
Confidence            322222  256888877766554

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=2.8e-16  Score=108.22  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec-CCCCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED-PFNGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d-~~~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.+ +.+|+++|+|||+|.+.++|++|++ + |+..+++|.|.|..+.
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~   95 (107)
T 2cph_A           17 KILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD   95 (107)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHccCCeE-EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence            467789999999999999999997663 6999998 6699999999999999999999998 5 8999999999999987


Q ss_pred             hh
Q psy3067         103 YT  104 (141)
Q Consensus       103 ~~  104 (141)
                      ..
T Consensus        96 ~~   97 (107)
T 2cph_A           96 SE   97 (107)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=5.5e-16  Score=107.99  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=69.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           17 TVFVANLDYKVGWKKLKEVFSMAGVVV-RADILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            467889999999999999999997663 6999999 689999999999999999999999 699999999999998765

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.63  E-value=3.5e-16  Score=110.90  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   86 (116)
T 2fy1_A            9 KLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKD-RTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP   86 (116)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECS-TTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            357789999999999999999997773 6999999 599999999999999999999998 6999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        87 ~   87 (116)
T 2fy1_A           87 S   87 (116)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6.2e-16  Score=106.15  Aligned_cols=77  Identities=13%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|  +|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           17 NLYVKNLDDGIDDERLRKAFSPFGTIT-SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHTTTTTSCEE-EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            467889999999999999999997663 6999987  89999999999999999999998 6999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        94 ~   94 (103)
T 2d9p_A           94 E   94 (103)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.63  E-value=1.9e-16  Score=109.03  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC---CCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI---GHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i---~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+   ++|.|.|..+
T Consensus        15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a   93 (106)
T 2dgp_A           15 KLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA   93 (106)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCC-EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence            467789999999999999999997663 69999997789999999999999999999998 788887   8999999988


Q ss_pred             chh
Q psy3067         102 RYT  104 (141)
Q Consensus       102 s~~  104 (141)
                      ...
T Consensus        94 ~~~   96 (106)
T 2dgp_A           94 DSE   96 (106)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            763

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=107.52  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee----EEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY----IFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry----IeV~~  100 (141)
                      .++++|||+++|++||+++|+.++.+...|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.    |.|..
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~   90 (99)
T 2div_A           11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY   90 (99)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence            467889999999999999999997652269999997899999999999999999999999 6999999999    88887


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      ++.
T Consensus        91 a~~   93 (99)
T 2div_A           91 ATY   93 (99)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            754

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.9e-16  Score=108.70  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhccc-CCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCc-CCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDG-LEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKER-IGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~-~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~-i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+. ++.+ ..|.|+.|+ +|+++|+|||+|.+.++|++|++ +|+.. +++|.|.|..+.
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~   88 (104)
T 2dhg_A           11 SLFVGDLTPDVDDGMLYEFFVKVYPSC-RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI   88 (104)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHCTTE-EEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence            4678899999999999999999 9866 369999994 99999999999999999999999 68888 999999998886


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        89 ~   89 (104)
T 2dhg_A           89 P   89 (104)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=7.8e-17  Score=107.00  Aligned_cols=74  Identities=12%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.+..+
T Consensus         8 l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~   82 (85)
T 1x4e_A            8 LYIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP   82 (85)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence            56789999999999999999997763 69999998889999999999999999999999 7999999999876543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.63  E-value=3e-17  Score=112.43  Aligned_cols=77  Identities=16%  Similarity=0.017  Sum_probs=68.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+..  .++.|+.+|+++|+|||+|.+.++|++||++|+..+++|.|.|..+...
T Consensus        19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   95 (101)
T 1fj7_A           19 NLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR   95 (101)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence            4678999999999999999999987753  5556657899999999999999999999999999999999999988763

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.63  E-value=1.9e-16  Score=105.16  Aligned_cols=76  Identities=24%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCC-cceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGR-PTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr-~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.|+.++. ++|+|||+|.++++|++|++ .|+..++||.|.|..+..
T Consensus         7 l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   84 (88)
T 4a8x_A            7 VHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA   84 (88)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence            46789999999999999999997773 699999855555 99999999999999999999 699999999999998864

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.63  E-value=1.8e-16  Score=115.22  Aligned_cols=96  Identities=13%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             CCCCceeEEEEEecHHHHH----HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067           7 GEVSDRYIEVFKVRRQEMD----WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL   82 (141)
Q Consensus         7 ~~ig~RyIEv~~~~~~d~~----~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~   82 (141)
                      +.++.|.|.|-.+......    .++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|++
T Consensus        66 ~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~  144 (167)
T 2cjk_A           66 HILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVDR  144 (167)
T ss_dssp             CEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCS-EEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred             cccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEE-EEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence            3466777777666543332    357789999999999999999997773 69999997789999999999999999999


Q ss_pred             HHHHcCCcCCCeeEEEEecch
Q psy3067          83 ALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        83 AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|+..++||.|.|..+.+
T Consensus       145 A~~~~~~~~~g~~i~V~~a~p  165 (167)
T 2cjk_A          145 VCQNKFIDFKDRKIEIKRAEP  165 (167)
T ss_dssp             HHHCSEECSSSSCEEEEECCC
T ss_pred             HHhCCCEEeCCeEEEEeecCC
Confidence            999999999999999998865

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.62  E-value=3.5e-16  Score=112.68  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus        44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           44 NLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            567899999999999999999997763 69999997889999999999999999999998 6999999999999988763

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=6.3e-16  Score=105.74  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+++  +  .|.++.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+..
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~--~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2fc8_A           17 TLFVKGLSEDTTEETLKESFDGS--V--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP   91 (102)
T ss_dssp             SEEEECCCTTCCHHHHHHTSTTC--S--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEEeCCCCccCHHHHHHHhcCC--e--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            46788999999999999999976  3  38899997799999999999999999999998 699999999999998876

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.62  E-value=2.1e-16  Score=110.99  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+
T Consensus        42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           42 NLFIYHLPQEFTDTDLASTFLPFGNVI-SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             EEEEECSCTTCCHHHHHHHTTTSCEEE-EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            467789999999999999999998773 69999997889999999999999999999998 6999999999998765

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.6e-16  Score=114.62  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=79.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. +|.++.+ .+|+++|+|||+|.+.++|++|++ .|+..+++|.|.|..+....
T Consensus         3 l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A            3 LYVGNLDKAITEDILKQYFQVGGPIA-NIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             EEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             EEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            45789999999999999999998774 7999999 789999999999999999999995 79999999999999886533


Q ss_pred             cccCC----CCCCCCcccCCCCCCC
Q psy3067         106 QHRAP----RCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~~~~~----~~~~~lp~~~~~~~~~  126 (141)
                      .....    =++.+||.+.+.+.+.
T Consensus        81 ~~~~~~~~~l~v~nl~~~~t~~~l~  105 (166)
T 3md3_A           81 QSSSDDTFNLFVGDLNVNVDDETLR  105 (166)
T ss_dssp             CCCCTTCEEEEEESCCTTCCHHHHH
T ss_pred             CCCCCCCceEEECCCCCCCCHHHHH
Confidence            32211    1156888887766554

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.62  E-value=5e-16  Score=112.39  Aligned_cols=77  Identities=18%  Similarity=0.136  Sum_probs=70.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..+..
T Consensus        48 ~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           48 CLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             CBCEETCTTSCCHHHHHHHHTTTSCEE-EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            467789999999999999999997663 69999998889999999999999999999999 699999999999987765

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.61  E-value=3.9e-17  Score=118.71  Aligned_cols=98  Identities=10%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++|||+++|++||+++|+.++.+. +|.++.|+.+|+++|+|||+|.++++|++|++. .+.++||.|.|..+....
T Consensus         5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~~   82 (167)
T 2cjk_A            5 KMFIGGLNWDTTEDNLREYFGKYGTVT-DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRD   82 (167)
T ss_dssp             EEEECSCCTTCCHHHHHHHHTTTCCEE-EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccchh
Confidence            357799999999999999999998773 699999977899999999999999999999984 678999999998886533


Q ss_pred             ccc--CCCCCCCCcccCCCCCC
Q psy3067         106 QHR--APRCETSIPVSSSTHKP  125 (141)
Q Consensus       106 ~~~--~~~~~~~lp~~~~~~~~  125 (141)
                      ...  ..=++.+||.+.+.+.+
T Consensus        83 ~~~~~~~l~V~nlp~~~t~~~l  104 (167)
T 2cjk_A           83 EQDKTGKIFVGGIGPDVRPKEF  104 (167)
T ss_dssp             HHHHCEEEEEEEECTTCCHHHH
T ss_pred             hccCCCeEEECCCCCCCCHHHH
Confidence            222  12225677777666544

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.61  E-value=2.3e-16  Score=115.16  Aligned_cols=98  Identities=11%  Similarity=0.171  Sum_probs=83.7

Q ss_pred             CCcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHH
Q psy3067           4 CRTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKET   79 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~   79 (141)
                      .+...|+.|.|.|-......    -..++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.++++
T Consensus        70 ~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~  148 (172)
T 2g4b_A           70 FDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINV  148 (172)
T ss_dssp             GTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred             hCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce-EEEEEecCCCCCcceEEEEEeCCHHH
Confidence            35666778888887665432    23578899999999999999999998773 79999997799999999999999999


Q ss_pred             HHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          80 AELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        80 a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      |++|++ .|+..++||.|.|..|+
T Consensus       149 A~~A~~~l~g~~~~g~~l~V~~As  172 (172)
T 2g4b_A          149 TDQAIAGLNGMQLGDKKLLVQRAS  172 (172)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHcCCCEECCeEEEEEeCC
Confidence            999998 69999999999998764

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.61  E-value=3.2e-16  Score=114.91  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +|+..++||.|.|..+..
T Consensus        72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  149 (158)
T 2kn4_A           72 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  149 (158)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEE-EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            457789999999999999999998773 69999997799999999999999999999998 599999999999999876

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.61  E-value=9e-16  Score=108.89  Aligned_cols=77  Identities=18%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+ ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus        37 ~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  114 (124)
T 2kt5_A           37 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  114 (124)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECC-SSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            46788999999999999999999766 36999999 599999999999999999999999 7999999999999988763

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.61  E-value=5.6e-16  Score=109.88  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus        24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  101 (126)
T 3ex7_B           24 ILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  101 (126)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence            467899999999999999999997763 69999997799999999999999999999997 799999999999998865

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.61  E-value=8e-16  Score=113.08  Aligned_cols=77  Identities=17%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.|+.|. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+..
T Consensus        41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           41 TLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            467789999999999999999997663 69999997789999999999999999999999 699999999999999875

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-16  Score=114.18  Aligned_cols=78  Identities=15%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC----cCCCeeEEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE----RIGHRYIFFT   99 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~----~i~~RyIeV~   99 (141)
                      .++++||||++|++||+++|+.|+.+. .+|+|+.|+.+|+++|+|||+|.+. +|++|++ +|+.    .++||.|.|.
T Consensus        25 ~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~  103 (131)
T 2m2b_A           25 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVE  103 (131)
T ss_dssp             EEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEE
Confidence            468899999999999999999997763 2399999977999999999999999 9999998 6888    9999999999


Q ss_pred             ecchh
Q psy3067         100 GHRYT  104 (141)
Q Consensus       100 ~ss~~  104 (141)
                      .+...
T Consensus       104 ~a~~~  108 (131)
T 2m2b_A          104 FAKGS  108 (131)
T ss_dssp             ECCCS
T ss_pred             ECCCC
Confidence            88663

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.61  E-value=1.3e-16  Score=106.89  Aligned_cols=75  Identities=13%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.+ |++|++ +|+..++||.|.|..+..
T Consensus         4 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~   79 (90)
T 2ki2_A            4 IYVGNLVYSATSEQVKELFSQFGKVF-NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP   79 (90)
T ss_dssp             EEEEEECTTSSHHHHTTTHHHHTCCS-EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred             EEECCCCCCCCHHHHHHHHHhcCCEE-EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence            46789999999999999999997773 6999999778999999999999999 999998 599999999999998876

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=1.4e-15  Score=104.37  Aligned_cols=76  Identities=17%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| ..+ ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~-~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   93 (103)
T 2cq3_A           17 RLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR   93 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECC-TTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEec-CCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence            467789999999999999999997773 6999998 444 99999999999999999998 6999999999999998763

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.60  E-value=8.2e-16  Score=103.19  Aligned_cols=75  Identities=17%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.+  +|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   85 (92)
T 2dgv_A           10 QIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN   85 (92)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            357789999999999999999997663 6888875  89999999999999999999998 699999999999988865

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.60  E-value=4.6e-16  Score=122.56  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=71.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .|+++||||++|++||+++|+.|+  -| ..|+|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+.
T Consensus        70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v-~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~  148 (229)
T 3q2s_C           70 ALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN  148 (229)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTTCCCE-EEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCcce-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence            478899999999999999999998  44 369999998899999999999999999999999 69999999999999886


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus       149 ~  149 (229)
T 3q2s_C          149 K  149 (229)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.60  E-value=2.4e-16  Score=108.02  Aligned_cols=75  Identities=12%  Similarity=0.171  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+ ..|.|+.|+ +|+++|+|||+|.+.++|++|++ ++..|+||.|.|..+..
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~   85 (102)
T 2xs2_A           11 TVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR   85 (102)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence            35678999999999999999999877 369999994 99999999999999999999999 99999999999988865

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=7.8e-16  Score=110.97  Aligned_cols=97  Identities=10%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             CcCCCCceeEEEEEecHHH------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQE------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE   78 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e   78 (141)
                      +...++.|.|.|-.+....      -..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.+
T Consensus        62 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~  140 (166)
T 3md3_A           62 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQD  140 (166)
T ss_dssp             TTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHH
T ss_pred             CCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcceEEEEEeCCHH
Confidence            4455667777776553221      12467789999999999999999998774 6999999889999999999999999


Q ss_pred             HHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          79 TAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        79 ~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +|++|++ +|+..++||.|.|..++
T Consensus       141 ~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          141 DAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEESC
T ss_pred             HHHHHHHHhCCCccCCcEEEEEecC
Confidence            9999998 79999999999998765

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.60  E-value=5.1e-16  Score=111.13  Aligned_cols=75  Identities=19%  Similarity=0.055  Sum_probs=67.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+
T Consensus        65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           65 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             EEEEEeCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            456789999999999999999997773 69999998899999999999999999999997 6999999999998753

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=104.69  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.    |+++.+ .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g~----v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           17 TLVLSNLSYSATEETLQEVFEKATF----IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHCSSCSE----EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCE----EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            4677899999999999999999874    577888 899999999999999999999999 7999999999999988763

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.58  E-value=1.5e-15  Score=114.45  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=82.5

Q ss_pred             CcCCCCceeEEEEEecHHHH---------------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067           5 RTGEVSDRYIEVFKVRRQEM---------------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE   69 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~---------------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~   69 (141)
                      +...|+.|.|.|-.......               ..++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+
T Consensus        91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~  169 (216)
T 2qfj_A           91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARDPTTGKHKGY  169 (216)
T ss_dssp             SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-EEEEEECTTTCCEEEE
T ss_pred             cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-EEEEEecCCCCCcCce
Confidence            56678888888866543221               1356689999999999999999998773 6999999789999999


Q ss_pred             eEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          70 AYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        70 afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |||+|.+.++|.+|++ +|+..|++|.|.|..+..
T Consensus       170 afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~  204 (216)
T 2qfj_A          170 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT  204 (216)
T ss_dssp             EEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred             EEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence            9999999999999999 699999999999998865

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.1e-15  Score=103.46  Aligned_cols=76  Identities=12%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| . +.++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2cqi_A           17 TLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITE-H-TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP   93 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECC-C-CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             EEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEec-C-CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence            467889999999999999999997774 6999998 3 3378999999999999999998 7999999999999998763

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.57  E-value=1.2e-15  Score=111.05  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEEEe
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG--RPTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFFTG  100 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV~~  100 (141)
                      ++++|||+++|++||+++|+.++.+. +|+|+.++.+|  +++|+|||+|.++++|++|++ .|+..+.   ++.+.+..
T Consensus         6 l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~   84 (175)
T 3nmr_A            6 MFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP   84 (175)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence            56789999999999999999998774 79999996565  999999999999999999998 6776655   67888887


Q ss_pred             cchhhccc---CCCCCCCCcccCCCCCCC
Q psy3067         101 HRYTVQHR---APRCETSIPVSSSTHKPG  126 (141)
Q Consensus       101 ss~~~~~~---~~~~~~~lp~~~~~~~~~  126 (141)
                      +.......   ..=++.+||.+.+.+.++
T Consensus        85 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~  113 (175)
T 3nmr_A           85 ADSEKNNAVEDRKLFIGMISKKCTENDIR  113 (175)
T ss_dssp             CGGGCCSCGGGSEEEEESCCTTCCHHHHH
T ss_pred             ccccccccCCCCeEEEcCCCCcCCHHHHH
Confidence            76533222   112256889887766554

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.57  E-value=7.2e-16  Score=114.79  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=85.9

Q ss_pred             CCcCCCCceeEEEEEecHH------------------------HHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEee
Q psy3067           4 CRTGEVSDRYIEVFKVRRQ------------------------EMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVE   59 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~~------------------------d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~   59 (141)
                      .+...|+.|.|.|-.+...                        .-..++++|||+++|++||+++|+.++.+ ..|+++.
T Consensus        70 l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~  148 (198)
T 2yh0_A           70 FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVK  148 (198)
T ss_dssp             GTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEE
T ss_pred             hcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEee
Confidence            4566788888888766432                        12356788999999999999999999777 3699999


Q ss_pred             cCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          60 DPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        60 d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      |+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+....
T Consensus       149 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  195 (198)
T 2yh0_A          149 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA  195 (198)
T ss_dssp             CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred             cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            96799999999999999999999999 69999999999999887643

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-16  Score=111.32  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=73.3

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCccccc--------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNG--------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR   94 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~--------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R   94 (141)
                      -..++++|||+++|++||+++|+.++.+. .        |.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|
T Consensus         7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (116)
T 2lcw_A            7 NNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   85 (116)
Confidence            34689999999999999999999998774 5        8899997889999999999999999999998 699999999


Q ss_pred             eEEEEecchhh
Q psy3067          95 YIFFTGHRYTV  105 (141)
Q Consensus        95 yIeV~~ss~~~  105 (141)
                      .|.|..+....
T Consensus        86 ~l~V~~a~~~~   96 (116)
T 2lcw_A           86 PIKVSFATRRA   96 (116)
Confidence            99999887643

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.57  E-value=1.3e-15  Score=110.86  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=70.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus        49 ~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  126 (135)
T 2lea_A           49 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  126 (135)
T ss_dssp             CEEEECCCSSCHHHHHHHHHGGGSCCS-EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            467889999999999999999997663 69999997799999999999999999999998 699999999999998875

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=1.3e-15  Score=105.28  Aligned_cols=77  Identities=10%  Similarity=0.035  Sum_probs=67.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCc-ccccEEEe-ecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEI-ISNGITLV-EDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~i-v~~~I~i~-~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~  100 (141)
                      .++++|||+++|++||+++|+.++. +. .|.++ .|+.+|+++|+|||+|.+.++|++|++ +|  +..+++|.|.|..
T Consensus        10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~-~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~   88 (109)
T 2dis_A           10 RLFIGGIPKMKKREEILEEIAKVTEGVL-DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW   88 (109)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEE-EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhcCCce-EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence            3577899999999999999999964 42 58888 777789999999999999999999999 55  5899999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        89 a~~   91 (109)
T 2dis_A           89 AEP   91 (109)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            875

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.56  E-value=2.4e-15  Score=105.29  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             HHHHhcCCCCCCHHHHH---hhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067          26 WKLQHTGIVEGKKDDIA---QFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF   98 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~---~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV   98 (141)
                      .++++|||+++|++||+   ++|+.++.+. .|.|+.|+.+   ++++|+|||+|.++++|++|++ +|+..|++|.|.|
T Consensus        17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~-~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V   95 (111)
T 2cpi_A           17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA   95 (111)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhhccCCEE-EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence            46778999999999999   9999998663 6999988543   3677999999999999999999 5999999999999


Q ss_pred             Eecch
Q psy3067          99 TGHRY  103 (141)
Q Consensus        99 ~~ss~  103 (141)
                      ..+..
T Consensus        96 ~~a~~  100 (111)
T 2cpi_A           96 SLGTT  100 (111)
T ss_dssp             ESCCC
T ss_pred             Eeccc
Confidence            98876

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.56  E-value=4e-15  Score=110.77  Aligned_cols=76  Identities=21%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|||+++|+++|+++|+.|+.|. .|+|+.++.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+..
T Consensus        75 l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  151 (165)
T 1rk8_A           75 LFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  151 (165)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             EEEeCCCCCCCHHHHHHHhhcCCCEE-EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            68899999999999999999997773 69999998899999999999999999999998 699999999999998865

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=3.7e-15  Score=104.20  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| . ++++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        31 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~-~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  106 (109)
T 2err_A           31 RLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFN-E-RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA  106 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTCCCS-CEEECCB-T-TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEEECCCCcCCHHHHHHHHHhcCCEE-EEEEEEC-C-CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            367789999999999999999997773 6999998 3 5599999999999999999999 699999999999998865

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=3.2e-15  Score=102.03  Aligned_cols=74  Identities=15%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      .++++|||+++|++||+    ++|+.++.+. .|.|+.| ..+  +|+|||+|.++++|++|++ +|+..+++|.|.|..
T Consensus        11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~-~v~i~~~-~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~   86 (96)
T 2dgx_A           11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVK-SVELSPH-TDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL   86 (96)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEECSC-CST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhccccCcEE-EEEEEeC-CCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence            46788999999999999    9999998663 6999998 444  8999999999999999998 799999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        87 a~~   89 (96)
T 2dgx_A           87 ATG   89 (96)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            865

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.55  E-value=9.5e-16  Score=101.38  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             HHHhcCCCCC------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEEE
Q psy3067          27 KLQHTGIVEG------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIFF   98 (141)
Q Consensus        27 ~~~~gLp~s~------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIeV   98 (141)
                      ++++|||+++      |++||+++|+.++.+. .|.|+ . .+|+++|+|||+|.++++|++|++ +|+..++|| .|.|
T Consensus         4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A            4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-C-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-C-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            4678999999      7899999999998774 58877 3 799999999999999999999998 699999999 8765

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-15  Score=105.79  Aligned_cols=78  Identities=12%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCC------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEE
Q psy3067          26 WKLQHTGIVEG------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIF   97 (141)
Q Consensus        26 ~~~~~gLp~s~------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIe   97 (141)
                      .++++|||+++      |+++|+++|+.++.+. .|.|+ . .+|+++|+|||+|.++++|++|++ +|+..++|| .|.
T Consensus        17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~   93 (105)
T 2nlw_A           17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR   93 (105)
T ss_dssp             EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-C-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred             EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-C-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence            46789999999      7899999999998773 58887 3 789999999999999999999999 599999999 999


Q ss_pred             EEecchhhc
Q psy3067          98 FTGHRYTVQ  106 (141)
Q Consensus        98 V~~ss~~~~  106 (141)
                      |..++..++
T Consensus        94 V~~a~~~~k  102 (105)
T 2nlw_A           94 VNLFTDFDK  102 (105)
T ss_dssp             EECSCCCCC
T ss_pred             EEEcchHhh
Confidence            998875443

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=4.8e-15  Score=102.78  Aligned_cols=74  Identities=19%  Similarity=0.076  Sum_probs=65.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|..   +++++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus        24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   98 (109)
T 1x4a_A           24 RIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   98 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence            467889999999999999999997763 577754   46789999999999999999995 799999999999998866

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.55  E-value=5.8e-15  Score=113.45  Aligned_cols=75  Identities=12%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|+++|+++|+.+|.+. .|+|+.+ .+|+++|+|||+|.++++|++|++..+..++||.|.|....
T Consensus       111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~  185 (193)
T 2voo_A          111 SVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD  185 (193)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEEC-TTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred             EEEecCCCCcCCHHHHHHHHhcCCCEE-EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence            367799999999999999999998774 6999999 78999999999999999999999987779999999998764

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.55  E-value=6.2e-15  Score=102.93  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|   ++++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   85 (115)
T 3lqv_A           10 ILYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN   85 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence            357789999999999999999998774 6888876   6669999999999999999999 7999999999999998753

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1e-14  Score=101.66  Aligned_cols=75  Identities=8%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC--------CCeeE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI--------GHRYI   96 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i--------~~RyI   96 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+        .+|.|
T Consensus        27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l  104 (114)
T 1x5o_A           27 NLYISNLPLSMDEQELENMLKPFGQVI-STRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL  104 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence            567899999999999999999997663 6999999 599999999999999999999998 799998        46667


Q ss_pred             EEEecc
Q psy3067          97 FFTGHR  102 (141)
Q Consensus        97 eV~~ss  102 (141)
                      .|..+.
T Consensus       105 ~v~~a~  110 (114)
T 1x5o_A          105 LCKFSG  110 (114)
T ss_dssp             EEEECC
T ss_pred             eEEccC
Confidence            776554

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.54  E-value=1e-14  Score=111.87  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CcCCCCceeEEEEEecHHHHH------HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQEMD------WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE   78 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~~------~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e   78 (141)
                      +...+..|.|.+..+......      .++++|||+++|++||+++|+.++.+. .|+|+.| . +.++|+|||+|.+.+
T Consensus        78 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~d-~-~~~~g~~fV~f~~~~  154 (213)
T 4f02_A           78 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCD-E-NGSKGYGFVHFETQE  154 (213)
T ss_dssp             TTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-T-TEEEEEEEEEESSHH
T ss_pred             hhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeE-EEEeecc-C-CCCceEEEEEeCCHH
Confidence            455667777877766543322      367789999999999999999997663 6999998 3 558999999999999


Q ss_pred             HHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          79 TAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        79 ~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +|++|++ +|+..|+||.|.|..+..
T Consensus       155 ~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          155 AAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            9999997 699999999999998865

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.53  E-value=3.4e-16  Score=114.99  Aligned_cols=99  Identities=11%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++|||+++|++||+++|+.++.+. ++.+ .+..+|+++|+|||+|.++++|++||++|+..+++|.|.|..+....
T Consensus        15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~-~~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~   92 (175)
T 1fje_B           15 NLFIGNLNPNKSVAELKVAISELFAKN-DLAV-VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD   92 (175)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHH-TCCC-CEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcc-eEEE-EECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence            467899999999999999999997664 3333 33378999999999999999999999999999999999999887533


Q ss_pred             cccC----CCCCCCCcccCCCCCCC
Q psy3067         106 QHRA----PRCETSIPVSSSTHKPG  126 (141)
Q Consensus       106 ~~~~----~~~~~~lp~~~~~~~~~  126 (141)
                      ....    .=++.+||.+.+.+.++
T Consensus        93 ~~~~~~~~~l~v~nlp~~~t~~~l~  117 (175)
T 1fje_B           93 SKKVRAARTLLAKNLSFNITEDELK  117 (175)
T ss_dssp             CSTTGGGGEEEEESCCSSCCHHHHH
T ss_pred             ccccccCCEEEEeCCCCCCCHHHHH
Confidence            2211    11256889887766554

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.53  E-value=2e-15  Score=104.94  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=66.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      |++++||++.+||++|+++|+.++.|. ++++..      ++|+|||+|.++++|++|++ +|+..+++|.|.|..++..
T Consensus         9 wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~   81 (89)
T 2wbr_A            9 WLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN   81 (89)
T ss_dssp             EEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred             eEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence            567899999999999999999998874 588754      68999999999999999998 7999999999999999765


Q ss_pred             hc
Q psy3067         105 VQ  106 (141)
Q Consensus       105 ~~  106 (141)
                      +.
T Consensus        82 ~~   83 (89)
T 2wbr_A           82 EV   83 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.53  E-value=7.6e-15  Score=110.58  Aligned_cols=100  Identities=22%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.|..+...
T Consensus        30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~  108 (216)
T 2qfj_A           30 RVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI  108 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEE-EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence            467899999999999999999998663 69999997799999999999999999999999 7999999999999877542


Q ss_pred             hccc-------------CCCCCCCCcccCCCCCCC
Q psy3067         105 VQHR-------------APRCETSIPVSSSTHKPG  126 (141)
Q Consensus       105 ~~~~-------------~~~~~~~lp~~~~~~~~~  126 (141)
                      ....             ..=++.+||.+.+.+.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~  143 (216)
T 2qfj_A          109 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIK  143 (216)
T ss_dssp             GGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHH
T ss_pred             cccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHH
Confidence            2110             111256888887766554

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.53  E-value=4.3e-15  Score=100.52  Aligned_cols=72  Identities=24%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++-+    .++ . .+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus        18 ~l~V~nL~~~~t~~~l~~~F~~~g~v----~~~-~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           18 TLLAKNLSFNITEDELKEVFEDALEI----RLV-S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSEEEE----CCE-E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhCCcE----EEe-C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            46789999999999999999998654    333 4 789999999999999999999999 699999999999998865

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.53  E-value=1.3e-14  Score=114.55  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=92.1

Q ss_pred             CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL   84 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL   84 (141)
                      +...|+.|.|.|-.....  ..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.++|++|+
T Consensus        78 ~~~~~~g~~i~v~~~~~~--~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~  154 (284)
T 3smz_A           78 HQSRLRERELSVQLQPTD--ALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAK  154 (284)
T ss_dssp             TTCEETTEECEEEECCCS--CEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred             CCCeeCCeEEEEEecCCC--CEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence            445566777776554322  1467789999999999999999998773 6999999779999999999999999999999


Q ss_pred             H-HcCCcCCCeeEEEEecchhhcccCC-----CCCCCCccc-CCCCCC
Q psy3067          85 Q-KHKERIGHRYIFFTGHRYTVQHRAP-----RCETSIPVS-SSTHKP  125 (141)
Q Consensus        85 ~-k~~~~i~~RyIeV~~ss~~~~~~~~-----~~~~~lp~~-~~~~~~  125 (141)
                      + .|+..+++|.|.|..+.........     =++.+||.+ .+.+.+
T Consensus       155 ~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l  202 (284)
T 3smz_A          155 SDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDAL  202 (284)
T ss_dssp             HHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHH
T ss_pred             HHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHH
Confidence            5 7999999999999998764432211     125689988 454443

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.53  E-value=4.1e-15  Score=105.96  Aligned_cols=73  Identities=10%  Similarity=-0.058  Sum_probs=63.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||||++|++||+++|+.++ .+. .|.+..    ++++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus        30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~-~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           30 RITMKNLPEGCSWQDLKDLARENSLETT-FSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             EEEEECSSCCCCHHHHHHHHHHHTCCCS-EEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCeeE-EEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            467789999999999999999998 553 466533    3588999999999999999997 699999999999998764

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.52  E-value=1e-14  Score=105.73  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             CcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA   80 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a   80 (141)
                      +...++.|.|.|..+....    -..++.+|||+++|++||+++|+.++.+. .|.++.++.+|+++|+|||+|.+.++|
T Consensus        66 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A  144 (168)
T 1b7f_A           66 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEA  144 (168)
T ss_dssp             TTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred             CCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-EEEEEEcCCCCCcceEEEEEECCHHHH
Confidence            4556677777777664322    12467789999999999999999997773 699999966999999999999999999


Q ss_pred             HHHHH-HcCCcCCC--eeEEEEec
Q psy3067          81 ELALQ-KHKERIGH--RYIFFTGH  101 (141)
Q Consensus        81 ~~AL~-k~~~~i~~--RyIeV~~s  101 (141)
                      ++|++ +|+..+++  |.|.|..|
T Consensus       145 ~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          145 QEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHhcCCEecCCCeEEEEEeC
Confidence            99999 79999977  99988753

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=2.2e-15  Score=105.10  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.+..+..+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~  105 (115)
T 2cpx_A           27 VLYLKNLSPRVTERDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK  105 (115)
T ss_dssp             EEEEECCCTTCCHHHHHHHTHHHHHSS-SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcc-ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence            467899999999999999999997663 34333332489999999999999999999998 5999999999999998763


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus       106 ~  106 (115)
T 2cpx_A          106 K  106 (115)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=9.3e-15  Score=102.73  Aligned_cols=72  Identities=10%  Similarity=0.098  Sum_probs=59.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~  100 (141)
                      .++++|||+++|++||+++|+.++.+.  +.++.++.+   |+++|+|||+|.++++|++||+.- +.++|+.+.+..
T Consensus        10 ~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~   84 (114)
T 2dnl_A           10 KVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS   84 (114)
T ss_dssp             CEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence            467889999999999999999998885  888888555   899999999999999999999853 235666665543

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.52  E-value=1.2e-14  Score=110.43  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++|++||+++|+.++.| ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        90 ~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A           90 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             EEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCC-TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            56788999999999999999999777 36999999 599999999999999999999999 6999999999999988763


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus       168 ~  168 (177)
T 2f3j_A          168 I  168 (177)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.51  E-value=1.1e-14  Score=104.91  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA   80 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a   80 (141)
                      +...++.|.|.|-.+....    -..++.+|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|
T Consensus        65 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A  143 (167)
T 1fxl_A           65 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEA  143 (167)
T ss_dssp             TTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred             CCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe-EEEEEecCCCCCccceEEEEeCCHHHH
Confidence            4556677777776664322    12467789999999999999999998774 699999867999999999999999999


Q ss_pred             HHHHH-HcCCcCCCee--EEEE
Q psy3067          81 ELALQ-KHKERIGHRY--IFFT   99 (141)
Q Consensus        81 ~~AL~-k~~~~i~~Ry--IeV~   99 (141)
                      ++|++ +|+..++||.  |.|.
T Consensus       144 ~~A~~~l~g~~~~g~~~~i~v~  165 (167)
T 1fxl_A          144 EEAIKGLNGQKPSGATEPITVK  165 (167)
T ss_dssp             HHHHHHHTTCCCTTCSSCCEEE
T ss_pred             HHHHHHhcCCccCCCccceEEE
Confidence            99999 6999999986  5554

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-14  Score=98.11  Aligned_cols=72  Identities=14%  Similarity=0.120  Sum_probs=63.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|  +.|+.+|+   +|||+|.++++|++|+++|+..++||.|.|..+..
T Consensus        10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           10 SVFVSGFPRGVDSAQLSEYFLAFGPVA-SV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             EEEEECCCTTCCHHHHHHHGGGTSCEE-EE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeE-EE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence            467889999999999999999998774 35  66656777   99999999999999999999999999999987754

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2e-14  Score=97.95  Aligned_cols=72  Identities=15%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+.  +.++.    ++++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           21 DVYVGNLPRDARVSDLKRALRELGSVP--LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             EEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            467889999999999999999998874  66655    4688999999999999999997 699999999999998865

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.50  E-value=2.1e-14  Score=113.31  Aligned_cols=99  Identities=13%  Similarity=0.018  Sum_probs=84.7

Q ss_pred             CcCCCCceeEEEEEecHHHH-------HHHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC
Q psy3067           5 RTGEVSDRYIEVFKVRRQEM-------DWKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD   76 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~-------~~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s   76 (141)
                      +...++.|.|.|-.+.....       ..++++|||++ +|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+
T Consensus       158 ~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~  235 (284)
T 3smz_A          158 LGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT-FCQLACG-QDGQLKGFAVLEYET  235 (284)
T ss_dssp             TTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS-EEEEEEC-SSCCEEEEEEEECSS
T ss_pred             CCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE-EEEEEEC-CCCCcccEEEEEeCC
Confidence            45677888888877765442       24678899999 59999999999998773 6999999 799999999999999


Q ss_pred             HHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          77 KETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        77 ~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++|.+|++ +|+..++||.|.|..+....
T Consensus       236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~  265 (284)
T 3smz_A          236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGP  265 (284)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred             HHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence            999999999 69999999999999987643

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=1.7e-14  Score=100.29  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC-----eeEEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH-----RYIFFT   99 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~-----RyIeV~   99 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|+.|       |+|||+|.++++|++||+ +|+..|++     |.|.|.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~   88 (108)
T 1x4c_A           17 RVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK   88 (108)
T ss_dssp             EEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence            467889999999999999999997663 5888775       899999999999999999 69999999     999999


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      .+..
T Consensus        89 ~a~~   92 (108)
T 1x4c_A           89 VDGP   92 (108)
T ss_dssp             ESSC
T ss_pred             eCCC
Confidence            9876

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.49  E-value=3.9e-14  Score=102.98  Aligned_cols=74  Identities=16%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|+++.+ .+|+++|+|||+|.+.++|++|++ +|+..+.   +|.|.|..+
T Consensus        97 ~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A           97 KLFIGMISKKCTENDIRVMFSSFGQIE-ECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             eEEEcCCCCcCCHHHHHHHHHhCCCEE-EEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            466789999999999999999997773 6999999 789999999999999999999997 6876665   499998765

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-14  Score=98.33  Aligned_cols=73  Identities=16%  Similarity=0.113  Sum_probs=64.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. .|.++.+     ++|+|||+|.++++|++|++ +|+..+++|.|.|..+....
T Consensus         3 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A            3 VYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             EEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            45789999999999999999997763 6888876     78999999999999999999 69999999999999987633

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.49  E-value=6.3e-14  Score=96.36  Aligned_cols=70  Identities=9%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++        +|+|||+|.++++|++|++ +|+..|++|.|.|..+...
T Consensus        13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   83 (103)
T 2dgu_A           13 VLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP   83 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence            367789999999999999999997663 57765        3599999999999999998 6999999999999998763

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.7e-14  Score=107.01  Aligned_cols=76  Identities=13%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             HHHHhcC----CCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC----HHH----HHHHHH---HcCCc
Q psy3067          26 WKLQHTG----IVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD----KET----AELALQ---KHKER   90 (141)
Q Consensus        26 ~~~~~gL----p~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s----~e~----a~~AL~---k~~~~   90 (141)
                      .|+++||    ||++++++|++||+.+|-|. .+.++.||.+|+|+|+|||+|.+    +++    |.+|++   .++..
T Consensus         4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~-~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEIS-HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             EEEEEESSSSCCCCCCHHHHHHHHHTTSCCS-EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            3567899    99999999999999998774 79999999999999999999996    433    788887   38999


Q ss_pred             CCCeeEEEEecc
Q psy3067          91 IGHRYIFFTGHR  102 (141)
Q Consensus        91 i~~RyIeV~~ss  102 (141)
                      |+||.|.|..-.
T Consensus        83 I~Gr~irV~ln~   94 (136)
T 2j8a_A           83 IMGFKFEVILNK   94 (136)
T ss_dssp             ETTEEEEEEECC
T ss_pred             ecCcEEEEEECc
Confidence            999999998764

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=4.4e-14  Score=102.19  Aligned_cols=76  Identities=5%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-c--CCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-H--KERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~--~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||+++|+.||.|. +|.|+.+      +|+|||+|++.++|++|++. +  +..++||.|.|..+.
T Consensus        33 ~LfVgNLp~~vte~dL~~lF~~fG~V~-~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~  105 (119)
T 2ad9_A           33 VIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN  105 (119)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCCC-EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence            367789999999999999999998773 6888875      58999999999999999984 4  468999999999987


Q ss_pred             hhhccc
Q psy3067         103 YTVQHR  108 (141)
Q Consensus       103 ~~~~~~  108 (141)
                      ..+..+
T Consensus       106 ~k~~~~  111 (119)
T 2ad9_A          106 HKELKT  111 (119)
T ss_dssp             SSSCCC
T ss_pred             CCCCCc
Confidence            655443

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.48  E-value=4.1e-14  Score=94.93  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.+.|.  .|++.      +++|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus         8 l~V~nLp~~~t~~~l~~~F~~~~v~--~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   77 (88)
T 1wg1_A            8 ILVKNLPQDSNCQEVHDLLKDYDLK--YCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             EEEESCCSSCCHHHHHHHTCSSCCC--CEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEeCCCCCCCHHHHHHHHhhCCeE--EEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence            5678999999999999999999443  47773      688999999999999999999 799999999999988755

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=4.8e-14  Score=98.64  Aligned_cols=75  Identities=8%  Similarity=0.055  Sum_probs=63.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||+++|+.|+.+. .|.|+.+      +|+|||+|.+.++|++|++.   ++..++||.|.|..+.
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   89 (101)
T 2cq1_A           17 VLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   89 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence            367789999999999999999998773 5877654      68999999999999999983   4567999999999987


Q ss_pred             hhhcc
Q psy3067         103 YTVQH  107 (141)
Q Consensus       103 ~~~~~  107 (141)
                      .....
T Consensus        90 ~~~~~   94 (101)
T 2cq1_A           90 HKELK   94 (101)
T ss_dssp             CSSCC
T ss_pred             cccCc
Confidence            64443

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.48  E-value=2.5e-14  Score=104.92  Aligned_cols=93  Identities=22%  Similarity=0.241  Sum_probs=78.6

Q ss_pred             CcCCCCceeEEEEEecHHH------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQE------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE   78 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e   78 (141)
                      +...++.|.|.|-.+...+      -..++++|||+++|++||+++|+.++-    |.++ + .+|+++|+|||+|.+.+
T Consensus        74 ~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~----v~~~-~-~~~~~~g~afV~f~~~~  147 (175)
T 1fje_B           74 TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE----IRLV-S-QDGKSKGIAYIEFKSEA  147 (175)
T ss_dssp             GGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE----EEEE-C-SSSSCCSEEEEECSSHH
T ss_pred             CCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe----EEEe-c-CCCCCceEEEEEECCHH
Confidence            5567788888888775422      235788999999999999999999864    4555 5 89999999999999999


Q ss_pred             HHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          79 TAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        79 ~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +|.+|++ +|+..++||.|.|..+..
T Consensus       148 ~A~~A~~~l~g~~~~g~~i~v~~a~~  173 (175)
T 1fje_B          148 DAEKNLEEKQGAEIDGRSVSLYYTGE  173 (175)
T ss_dssp             HHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred             HHHHHHHHhCCCEECCeEEEEEecCC
Confidence            9999999 699999999999988764

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.5e-14  Score=102.76  Aligned_cols=74  Identities=5%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~ss  102 (141)
                      .++++||||++||+||+++|+.||.+. +|.|+.+      +|+|||+|+++++|++|++ .+  +..|+||.|.|..+.
T Consensus        18 ~LfV~nLp~~vte~dL~~lF~~fG~V~-~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~   90 (105)
T 1sjq_A           18 VIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN   90 (105)
T ss_dssp             EEEECSCCTTSCHHHHHHHHHHHCCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence            467899999999999999999998773 6888875      5899999999999999998 44  468999999998887


Q ss_pred             hhhc
Q psy3067         103 YTVQ  106 (141)
Q Consensus       103 ~~~~  106 (141)
                      ....
T Consensus        91 ~~~~   94 (105)
T 1sjq_A           91 HKEL   94 (105)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            6443

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.6e-14  Score=96.63  Aligned_cols=74  Identities=8%  Similarity=-0.045  Sum_probs=64.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccE-EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGI-TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I-~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .| .|+.|+.+|+    |||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   91 (96)
T 2e44_A           17 KLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD   91 (96)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred             EEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence            467789999999999999999998764 58 5777754444    9999999999999998 799999999999998876


Q ss_pred             h
Q psy3067         104 T  104 (141)
Q Consensus       104 ~  104 (141)
                      .
T Consensus        92 ~   92 (96)
T 2e44_A           92 E   92 (96)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.46  E-value=2.5e-14  Score=96.74  Aligned_cols=74  Identities=18%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      .++++|||+++|++||+    ++|+.++.+. .|.++.   +|+++|+|||+|.+.++|++|++ +|+..++||.|.|..
T Consensus        10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   85 (97)
T 1nu4_A           10 TIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY   85 (97)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            35778999999999999    9999998663 477653   58899999999999999999998 699999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        86 a~~   88 (97)
T 1nu4_A           86 AKT   88 (97)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            865

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=9e-14  Score=93.27  Aligned_cols=70  Identities=16%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++        +|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A           10 KLFIGNLPREATEQEIRSLFEQYGKVL-ECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTSSCEE-EEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence            457789999999999999999997763 57776        4799999999999999997 7999999999999988763

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.45  E-value=2.4e-14  Score=113.45  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=80.6

Q ss_pred             CcCCCCceeEEEEEecHHHH-----------HHHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCC--CCcceee
Q psy3067           5 RTGEVSDRYIEVFKVRRQEM-----------DWKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEA   70 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~-----------~~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~--Gr~~G~a   70 (141)
                      +...++.|.|.|-.+.....           ..++++|||++ +|++||+++|+.++.+. .|+|+.| .+  |+++|+|
T Consensus       180 ~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~~~-~~~tg~~~g~a  257 (292)
T 2ghp_A          180 NGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAG-QKEHSFNNCCA  257 (292)
T ss_dssp             TTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSC-CC---CCCEEE
T ss_pred             CCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee-EEEEEec-CCcCCCCceEE
Confidence            55667788888876643322           23677899999 99999999999998774 6999998 55  9999999


Q ss_pred             EEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          71 YVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        71 fV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      ||+|.+.++|++|+.+|+..|+||.|.|..+..
T Consensus       258 fV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          258 FMVFENKDSAERALQMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             EEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred             EEEeCCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence            999999999999997799999999999998865

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.45  E-value=6.2e-14  Score=119.94  Aligned_cols=77  Identities=16%  Similarity=0.228  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .||++|||+++|+++|.++|+.|+.|. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..|+++.|.|..+..
T Consensus       104 ~lfV~nL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          104 TLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCee-EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            467789999999999999999998773 69999997899999999999999999999996 699999999999999875

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.45  E-value=5.1e-15  Score=107.91  Aligned_cols=100  Identities=6%  Similarity=-0.016  Sum_probs=73.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC----Cccccc-EEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL----EIISNG-ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~----~iv~~~-I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~  100 (141)
                      .++++|||+++|++||+++|+.+    +++... ..+... ..++++|+|||+|.++++|++|+++|+..+++|.|.|..
T Consensus         6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~-~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~   84 (172)
T 2g4b_A            6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV-QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   84 (172)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE-EEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred             EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee-EecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecC
Confidence            45778999999999999999998    422000 012222 346678999999999999999998899999999999998


Q ss_pred             cchhhcccCCC--CCCCCcccCCCCCCC
Q psy3067         101 HRYTVQHRAPR--CETSIPVSSSTHKPG  126 (141)
Q Consensus       101 ss~~~~~~~~~--~~~~lp~~~~~~~~~  126 (141)
                      +..........  ++.+||.+.+.+.++
T Consensus        85 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~  112 (172)
T 2g4b_A           85 PHDYQPLPGAHKLFIGGLPNYLNDDQVK  112 (172)
T ss_dssp             CSSCCCCTTTTCEEEECCCTTCCHHHHH
T ss_pred             CcccCCCCCCCEEEEEcCCCcCCHHHHH
Confidence            76533222222  256888877765544

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.45  E-value=7.5e-14  Score=101.12  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccE------EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI------TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I------~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      ++++|||+++|++||+++|+.++.+. .+      .+... .+|+++|+|||+|.+.++|++|++ +|+..++||.|.|.
T Consensus        48 l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~  125 (143)
T 3egn_A           48 IYVKNLAKHVQEKDLKYIFGRYVDFS-SETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ  125 (143)
T ss_dssp             EEEEEECTTCCHHHHHHHHGGGCCTT-CHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcc-cccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence            56789999999999999999998663 22      12222 479999999999999999999999 79999999999999


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      .+..
T Consensus       126 ~a~~  129 (143)
T 3egn_A          126 FARS  129 (143)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8854

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=8.9e-14  Score=97.65  Aligned_cols=74  Identities=12%  Similarity=0.077  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC--CcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK--ERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~--~~i~~RyIeV~~ss  102 (141)
                      .++++||||++|++||+++|+.|+.+. .|.|+.+      +|+|||+|.+.++|++|++ ++.  ..++||.|.|..+.
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~   89 (104)
T 1wex_A           17 VVHVRGLCESVVEADLVEALEKFGTIC-YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST   89 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence            367789999999999999999998774 5777653      5899999999999999998 443  46999999999987


Q ss_pred             hhhc
Q psy3067         103 YTVQ  106 (141)
Q Consensus       103 ~~~~  106 (141)
                      ....
T Consensus        90 ~~~~   93 (104)
T 1wex_A           90 SKRI   93 (104)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            6443

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=6.8e-14  Score=98.41  Aligned_cols=71  Identities=11%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC--CcCCCeeEEEEec
Q psy3067          26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK--ERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~--~~i~~RyIeV~~s  101 (141)
                      .++++|||| ++|++||+++|+.|+.|. +|.|+.+      +|+|||+|+++++|++|++ +|.  ..+.||.|.|..+
T Consensus        17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a   89 (102)
T 1x4d_A           17 VVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS   89 (102)
T ss_dssp             EEEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred             EEEEeCCCCCcCCHHHHHHHHHhcCCEE-EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence            467899999 999999999999998773 6888876      2799999999999999998 454  4599999999988


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      ..
T Consensus        90 ~~   91 (102)
T 1x4d_A           90 QK   91 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=1.1e-13  Score=94.34  Aligned_cols=71  Identities=8%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.+      +|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpj_A           17 RLFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH   88 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHTSTTCCCS-EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence            467789999999999999999997663 6887754      5899999999999999996 699999999999998866

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.44  E-value=4.3e-14  Score=93.62  Aligned_cols=68  Identities=9%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC----C-------cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCe
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL----E-------IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR   94 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~----~-------iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~R   94 (141)
                      .++++|||+++|++||+++|+.+    +       .+ .+|.+..+      +|+|||+|.++++|++|+.+|+..++||
T Consensus         8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v-~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~g~   80 (87)
T 2hzc_A            8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV-LAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQGQ   80 (87)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE-EEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcc-eEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence            46788999999999999999998    5       33 24666543      6999999999999999997799999999


Q ss_pred             eEEEEe
Q psy3067          95 YIFFTG  100 (141)
Q Consensus        95 yIeV~~  100 (141)
                      .|.|..
T Consensus        81 ~l~V~r   86 (87)
T 2hzc_A           81 SLKIRR   86 (87)
T ss_dssp             ECEEEC
T ss_pred             EEEEeC
Confidence            999863

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=1.3e-13  Score=93.68  Aligned_cols=71  Identities=18%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC--CeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG--HRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~--~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.+      +|+|||+|.+.++|++|++ +|+..++  +|.|.|..+.
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~   91 (97)
T 1why_A           19 RLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence            467789999999999999999998763 5777543      6899999999999999998 6999999  9999999886


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        92 ~   92 (97)
T 1why_A           92 S   92 (97)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=97.27  Aligned_cols=95  Identities=18%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             CCCCCcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067           1 MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA   80 (141)
Q Consensus         1 ~~~~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a   80 (141)
                      |||-+-++|-+ |=+.-.....  ..++++|||+++|++||++.|+.+|.+. +|.++.+      +|+|||+|++.++|
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~ps--~~l~V~NLp~~~te~~L~~lF~~fG~V~-~v~i~~~------kg~AFVef~~~~~A   70 (100)
T 3r27_A            1 MGHHHHHHMEN-YDDPHKTPAS--PVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMPK------KRQALVEFEDVLGA   70 (100)
T ss_dssp             -----------------CCCCC--SEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEETT------TTEEEEEESSHHHH
T ss_pred             CCcccccchhc-ccccccCCCC--cEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEEcC------CCEEEEEECCHHHH
Confidence            67777666632 1111111111  1367899999999999999999998774 5887643      58999999999999


Q ss_pred             HHHHH-HcCCc--CCCeeEEEEecchhh
Q psy3067          81 ELALQ-KHKER--IGHRYIFFTGHRYTV  105 (141)
Q Consensus        81 ~~AL~-k~~~~--i~~RyIeV~~ss~~~  105 (141)
                      ++|++ .++..  ++||.|.|.-|+.++
T Consensus        71 ~~Av~~ln~~~~~i~Gr~i~V~~S~~k~   98 (100)
T 3r27_A           71 CNAVNYAADNQIYIAGHPAFVNYSTSQK   98 (100)
T ss_dssp             HHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred             HHHHHHhcCCCceeCCcEEEEEeccccc
Confidence            99998 46554  899999999887643

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.43  E-value=6.9e-14  Score=98.67  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee-----EEE
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY-----IFF   98 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry-----IeV   98 (141)
                      ..|+++|||+++|++||+++|+.++.+. .|.|+.|       |+|||+|.++++|++||+ +|+..|++|.     |.|
T Consensus        17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v   88 (115)
T 3beg_B           17 NRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV   88 (115)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence            3578899999999999999999997663 5887765       899999999999999999 7999999987     777


Q ss_pred             Eecch
Q psy3067          99 TGHRY  103 (141)
Q Consensus        99 ~~ss~  103 (141)
                      ..+..
T Consensus        89 ~~~~~   93 (115)
T 3beg_B           89 KVDGP   93 (115)
T ss_dssp             EECC-
T ss_pred             ccCCC
Confidence            76655

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=92.20  Aligned_cols=71  Identities=10%  Similarity=0.073  Sum_probs=62.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.        |+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A           11 KIFVGNVSAACTSQELRSLFERRGRVI-ECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHHHSCEE-EEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHcCCCEE-EEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            467789999999999999999998763 577764        399999999999999998 6999999999999998764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        82 ~   82 (90)
T 2dnp_A           82 Q   82 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=100.04  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      .++++||||+++++||+    ++|+.||.+. +|.+  . .+|+++|+|||+|.+.++|++|++ +|+..+.||.|.|..
T Consensus        31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i--~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~  106 (127)
T 2a3j_A           31 VVLITNINPEVPKEKLQALLYALASSQGDIL-DIVV--D-LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF  106 (127)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEE--C-CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEe--c-cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence            46789999999999976    6999998663 4655  3 578999999999999999999997 699999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus       107 a~~  109 (127)
T 2a3j_A          107 SET  109 (127)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            864

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=9e-14  Score=94.93  Aligned_cols=69  Identities=10%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||+++|++||+++|+.++.+. +|.++      +++|+|||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus        30 l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           30 AYIGNIPHFATEADLIPLFQNFGFIL-DFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCCS-EEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             EEEcCCCcccCHHHHHHHHHhCCCEE-EEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            56789999999999999999998773 58876      457999999999999999997 69999999999987664

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.42  E-value=7.6e-14  Score=94.65  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||||++|++||+++|+.+|.+. +|.|+.+     ++|+|||+|.++++|+++.. ....+++|.|.|..+..
T Consensus        13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~-~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A           13 KVFVGRCTEDMTAEELQQFFCQYGEVV-DVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEP   83 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCC
Confidence            457799999999999999999998763 6888775     78999999999999984322 23346799999998865

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=90.57  Aligned_cols=69  Identities=20%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~s  101 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.+      +|+|||+|.+.++|++|++ + ++..++||.|.|..+
T Consensus        14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a   84 (85)
T 2ytc_A           14 TLYVGGLGDTITETDLRNHFYQFGEIR-TITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG   84 (85)
T ss_dssp             CEEEECCTTTSCHHHHHHHHHTTSCEE-EEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhCCCEe-EEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence            457789999999999999999997663 5888764      5899999999999999999 5 889999999998765

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=1.5e-13  Score=92.50  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCc-ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC-CcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEI-ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK-ERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~i-v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~-~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++. +. .+.+       +++|+|||+|.+.++|++|++ +|+ ..+++|.|.|..+.
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~-~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~   81 (93)
T 2cqh_A           10 KLYIGNLSPAVTADDLRQLFGDRKLPLA-GQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   81 (93)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCS-SCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCceE-EEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence            4677899999999999999999976 53 4554       246899999999999999998 698 89999999999887


Q ss_pred             hh
Q psy3067         103 YT  104 (141)
Q Consensus       103 ~~  104 (141)
                      ..
T Consensus        82 ~~   83 (93)
T 2cqh_A           82 SK   83 (93)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=1.5e-13  Score=95.27  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.+      +|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        28 l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   98 (109)
T 1x4g_A           28 VYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   98 (109)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence            56789999999999999999997663 5888775      6899999999999999996 699999999999998876

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.41  E-value=1.8e-13  Score=108.02  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL   84 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL   84 (141)
                      +...|+.|.|.|-.++..  ..++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|.+|+
T Consensus        79 ~g~~i~g~~l~v~~a~~~--~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~  154 (261)
T 3sde_A           79 DGTILKSRPLRIRFATHG--AALTVKNLSPVVSNELLEQAFSQFGPVE-KAVVVVD-DRGRATGKGFVEFAAKPPARKAL  154 (261)
T ss_dssp             TTCEETTEECEEEECCCS--SEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-TTSCEEEEEEEEESSHHHHHHHH
T ss_pred             CCcEECCceeEeeecccC--CcccccCCCCCCCHHHHHHHHHhcCCeE-EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHH
Confidence            556677788888776542  2477889999999999999999997773 6999999 89999999999999999999999


Q ss_pred             HH--cCCcCC---CeeEEEEecchh
Q psy3067          85 QK--HKERIG---HRYIFFTGHRYT  104 (141)
Q Consensus        85 ~k--~~~~i~---~RyIeV~~ss~~  104 (141)
                      +.  ++..+.   +|.|.|.++...
T Consensus       155 ~~l~~~~~~~~~~~r~i~v~~~~~~  179 (261)
T 3sde_A          155 ERCGDGAFLLTTTPRPVIVEPMEQF  179 (261)
T ss_dssp             HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred             HHhcCCeEEecCCCceEEEeecccc
Confidence            85  666665   999999998763

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.41  E-value=2.6e-13  Score=95.03  Aligned_cols=69  Identities=13%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++        +|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           33 RLFVRPFPLDVQESELNEIFGPFGPMK-EVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             EEEECSSCTTCCHHHHHHHHTTTSCCC-EEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            357789999999999999999997763 58876        6899999999999999998 699999999999998865

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.40  E-value=1.1e-13  Score=100.96  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .|+|+.|     ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A           75 KVYVGNLGNNGNKTELERAFGYYGPLR-SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             EEEEESCCSCCSCHHHHHHHHHHSCEE-EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            467889999999999999999997763 6888876     57899999999999999998 799999999999988765

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.5e-13  Score=90.70  Aligned_cols=70  Identities=10%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.++.        |+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus        12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A           12 KLHVGNISPTCTNQELRAKFEEYGPVI-ECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCCC-EEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence            357789999999999999999997663 588764        399999999999999997 6999999999999998763

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.39  E-value=4.2e-13  Score=91.43  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=60.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.+  +.+. .|.+        ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~-~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   87 (99)
T 2cpd_A           17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVE-RVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK   87 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSTTCEE-EEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence            46778999999999999999999  5552 3443        35799999999999999999 79999999999999887


Q ss_pred             hh
Q psy3067         103 YT  104 (141)
Q Consensus       103 ~~  104 (141)
                      ..
T Consensus        88 ~~   89 (99)
T 2cpd_A           88 PV   89 (99)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.39  E-value=3.6e-13  Score=92.32  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+ ++|++||+++|+.++.+. .|.+.        +|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   94 (97)
T 2xnq_A           24 RLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS   94 (97)
T ss_dssp             EEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence            357789999 999999999999997663 57762        6899999999999999999 799999999999988764

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.39  E-value=3.6e-13  Score=94.57  Aligned_cols=71  Identities=15%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.|+.+. .|.|+.      .+|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        12 ~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           12 VILAKNLPAGTLAAEIQETFSRFGSLG-RVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            367789999999999999999998763 577653      45899999999999999998 699999999999988765

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.5e-13  Score=91.68  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+ ++|++||+++|+.++.+. .|.|.        +|+|||+|.+.++|++|++ +|+..+.+|.|.|..+..
T Consensus        12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   82 (96)
T 2kvi_A           12 RLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS   82 (96)
T ss_dssp             EEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence            367789999 999999999999998763 57773        6899999999999999999 699999999999998865

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.38  E-value=4.1e-13  Score=96.16  Aligned_cols=71  Identities=8%  Similarity=-0.012  Sum_probs=60.6

Q ss_pred             HHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~s  101 (141)
                      .++++||||+ +|++||+++|+.|+-|. +|.|+.      .+|+|||+|.+.++|++|++ ++  ...|+||.|.|..+
T Consensus        27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~-~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a   99 (112)
T 1x4f_A           27 VIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS   99 (112)
T ss_dssp             EEEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred             EEEEeCCCCccCCHHHHHHHHHhcCCEE-EEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence            4677999998 99999999999997663 588763      36899999999999999998 34  45799999999988


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      ..
T Consensus       100 ~~  101 (112)
T 1x4f_A          100 EK  101 (112)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=1.4e-13  Score=91.98  Aligned_cols=71  Identities=13%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++|||+++|++||+++|+.++.+. .|.|+.+     ++|+|||+|.++++|++|+.. ...++++.|.|..+...
T Consensus         8 l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~   78 (88)
T 1wf0_A            8 VFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK   78 (88)
T ss_dssp             EEEESCCSSSCHHHHHHHSTTTSCCC-EEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHcCCee-EEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence            56789999999999999999997763 5887764     779999999999999876544 44568999999988653

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.37  E-value=1.3e-13  Score=96.63  Aligned_cols=71  Identities=13%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             HhcCCCCCCHHHHHhhc------------ccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee
Q psy3067          29 QHTGIVEGKKDDIAQFF------------DGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY   95 (141)
Q Consensus        29 ~~gLp~s~te~DI~~FF------------s~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry   95 (141)
                      ..||||++++++|++.|            +.+|.|. +|.|+.| .+|+++|+|||+|.++++|++|++ +|+..++||.
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~-~v~i~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~   97 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP   97 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE-EEEEEeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence            45778888777776666            9998774 6999999 679999999999999999999998 7999999999


Q ss_pred             EEEEec
Q psy3067          96 IFFTGH  101 (141)
Q Consensus        96 IeV~~s  101 (141)
                      |.|..+
T Consensus        98 i~v~~s  103 (104)
T 1jmt_A           98 IHAELS  103 (104)
T ss_dssp             CCEEEC
T ss_pred             EEEEEc
Confidence            988654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.37  E-value=1.9e-13  Score=108.21  Aligned_cols=117  Identities=10%  Similarity=-0.001  Sum_probs=83.8

Q ss_pred             CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHH
Q psy3067           5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELA   83 (141)
Q Consensus         5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~A   83 (141)
                      +...++.|.|.|-....   ..++++|||+++|+++|+++|+.++ .+ ..|.++.+ ..|+++|+|||+|.+.++|++|
T Consensus       101 ~~~~~~g~~i~v~~~~~---~~l~v~nlp~~~t~~~l~~~f~~~G~~i-~~v~i~~~-~~~~~~g~afV~f~~~~~a~~A  175 (292)
T 2ghp_A          101 THKVVGQNEIIVSHLTE---CTLWMTNFPPSYTQRNIRDLLQDINVVA-LSIRLPSL-RFNTSRRFAYIDVTSKEDARYC  175 (292)
T ss_dssp             TTCEETTEECEEEECCS---CEEEEECCCTTCCHHHHHHHHHHTTCCC-CEEECC--------CCEEEEECSSHHHHHHH
T ss_pred             CCcEeCCcEEEEEECCC---CEEEEECCCCCCCHHHHHHHHHHhCCCe-EEEEEEeC-CCCCcceEEEEEECCHHHHHHH
Confidence            45566777777765532   2457789999999999999999998 66 36999999 6799999999999999999999


Q ss_pred             HH-HcCCcCCCeeEEEEecchhhcccCC---------CCCCCCccc-CCCCCCC
Q psy3067          84 LQ-KHKERIGHRYIFFTGHRYTVQHRAP---------RCETSIPVS-SSTHKPG  126 (141)
Q Consensus        84 L~-k~~~~i~~RyIeV~~ss~~~~~~~~---------~~~~~lp~~-~~~~~~~  126 (141)
                      ++ +|+..+++|.|.|..+.........         =++.+||.+ .+.+.+.
T Consensus       176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~  229 (292)
T 2ghp_A          176 VEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLR  229 (292)
T ss_dssp             HHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHH
T ss_pred             HHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHH
Confidence            99 7999999999999988653322111         114588887 6655443

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.37  E-value=3.4e-13  Score=93.64  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             HHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||++ +|++||+++|+.++.+. .|.|        ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~-~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           29 RVFIGNLNTALVKKSDVETIFSKYGRVA-GCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             EEEECSCCCSSCCHHHHHHHHGGGSCCS-EEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            4678999999 99999999999997763 5776        56899999999999999996 699999999999998864

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.37  E-value=5.6e-14  Score=104.48  Aligned_cols=75  Identities=8%  Similarity=0.058  Sum_probs=61.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccE------EEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI------TLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG  100 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I------~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~  100 (141)
                      ++++|||+++|++||+++|+.++.+. ++      .+... ..++++|+|||+|.++++|++||++|+..+++|.|.|..
T Consensus         7 l~V~nLp~~~te~~l~~~F~~~g~i~-g~~~~~~~~v~~~-~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~   84 (198)
T 2yh0_A            7 LYVGNIPFGITEEAMMDFFNAQMRLG-GLTQAPGNPVLAV-QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   84 (198)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHHHHH-TCCSSSSCSEEEE-EEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEEC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHhhc-ccccCCCCceEEe-EecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeC
Confidence            56789999999999999999983321 11      12222 457789999999999999999998899999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        85 ~~~   87 (198)
T 2yh0_A           85 PHD   87 (198)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.30  E-value=2.8e-12  Score=101.02  Aligned_cols=74  Identities=18%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      .|+++|||+++|++||+    ++|+.|+.+. .|+++.   +|+++|+|||+|.+.++|++|++ +|+..+.+|.|.|..
T Consensus        11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   86 (282)
T 3pgw_A           11 TIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY   86 (282)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence            46889999999999977    8999997763 577654   68999999999999999999996 799999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        87 a~~   89 (282)
T 3pgw_A           87 AKT   89 (282)
T ss_pred             ecc
Confidence            754

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.29  E-value=8.8e-12  Score=87.49  Aligned_cols=71  Identities=11%  Similarity=0.026  Sum_probs=61.5

Q ss_pred             CCHHHHHhhcccCCcccccEEEeecCC-CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067          36 GKKDDIAQFFDGLEIISNGITLVEDPF-NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH  107 (141)
Q Consensus        36 ~te~DI~~FFs~~~iv~~~I~i~~d~~-~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~  107 (141)
                      .+++||++.|+.+|.|. +|.|+.|+. +|+++|+|||+|.++++|++|++ +|+..++||.|.|..+......
T Consensus        25 d~~~dl~~~f~~~G~V~-~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~   97 (105)
T 2pe8_A           25 DLEVETKEECEKYGKVG-KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR   97 (105)
T ss_dssp             -CHHHHHHHGGGGSCEE-EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred             HHHHHHHHHHHhcCCEE-EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence            47999999999998774 699999843 37999999999999999999998 7999999999999998874443

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.28  E-value=1.7e-12  Score=97.15  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             HHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+ ++|++||+++|+.++.+. .|.++.+ .    +|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus         6 l~v~nlp~~~~~~~~l~~~F~~~G~i~-~v~i~~~-~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~   78 (198)
T 1qm9_A            6 LLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN-K----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH   78 (198)
T ss_dssp             EEEECCCSSSCCHHHHHHHHHTTCCCS-EEECSTT-C----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred             EEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence            46789999 999999999999997663 6998887 3    7899999999999999998 799999999999998864

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.27  E-value=2.4e-12  Score=99.57  Aligned_cols=72  Identities=15%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+ ++|++||+++|+.++.+. +|.|+.| .    +|+|||+|.++++|++|++ +|+..+.+|.|.|..+..
T Consensus        36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~-~v~i~~~-~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~  109 (229)
T 2adc_A           36 VLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN-K----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH  109 (229)
T ss_dssp             EEEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCT-T----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEEEEC-C----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            467789999 999999999999997663 6999888 3    7899999999999999997 799999999999998764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.27  E-value=3.7e-12  Score=98.31  Aligned_cols=71  Identities=10%  Similarity=0.034  Sum_probs=63.3

Q ss_pred             HHHhcCC-CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGI-VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp-~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++||| +++|+++|+++|+.++-|. +|+|+.+     .+|+|||+|.++++|++|++ +|+..+.||.|.|..+..
T Consensus         7 l~V~nL~~~~~~~~~L~~~F~~~G~v~-~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A            7 LMVYGLDQSKMNCDRVFNVFCLYGNVE-KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             EEEECCCTTTCCHHHHHHHHTTTSCEE-EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EEEeCCCcccCCHHHHHHHHHhcCCeE-EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence            4678999 9999999999999997663 6888876     26899999999999999998 799999999999998864

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.25  E-value=5.8e-12  Score=95.91  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=62.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH--RYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~ss  102 (141)
                      .++++||||++|+++|+++|+.||-|. .|.|..+    +++|+|||+|.+.++|++|++ +|+..|.+  |.|.|..+.
T Consensus        48 ~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak  122 (164)
T 1sjr_A           48 RIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK  122 (164)
T ss_dssp             EEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred             EEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence            345689999999999999999998774 5887543    257999999999999999998 69999954  999999887


Q ss_pred             hh
Q psy3067         103 YT  104 (141)
Q Consensus       103 ~~  104 (141)
                      ..
T Consensus       123 ~~  124 (164)
T 1sjr_A          123 LT  124 (164)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.24  E-value=5.7e-12  Score=99.35  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. .|.|..      .+|+|||+|.+.++|++|++ .|+..+++|.|.|..+...
T Consensus        24 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~   96 (261)
T 3sde_A           24 RLFVGNLPTDITEEDFKRLFERYGEPS-EVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG   96 (261)
T ss_dssp             EEEEESCCTTCCHHHHHHHTGGGCCCS-EEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence            478899999999999999999998774 587754      36899999999999999998 7999999999999987641


Q ss_pred             hcccCCCCCCCCcccCCCCCC
Q psy3067         105 VQHRAPRCETSIPVSSSTHKP  125 (141)
Q Consensus       105 ~~~~~~~~~~~lp~~~~~~~~  125 (141)
                          ..=++.+||.+.+.+.+
T Consensus        97 ----~~l~v~nl~~~~t~~~l  113 (261)
T 3sde_A           97 ----AALTVKNLSPVVSNELL  113 (261)
T ss_dssp             ----SEEEEESCCTTCCHHHH
T ss_pred             ----CcccccCCCCCCCHHHH
Confidence                11224567766655443

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.24  E-value=7.5e-12  Score=85.00  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=58.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|  +++|++||+++|+.++.+. .|.|.      +++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus        18 l~V~n--~~~t~~~l~~~F~~~G~i~-~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~   86 (97)
T 1x5p_A           18 LYVYG--EDMTPTLLRGAFSPFGNII-DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK   86 (97)
T ss_dssp             EEEEC--SSCCHHHHHHHHTTTSCEE-EEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred             EEEcC--CCCCHHHHHHHHhhCCCEE-EEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            45567  4899999999999997663 57763      577899999999999999996 699999999999998865

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=1.5e-11  Score=89.39  Aligned_cols=72  Identities=15%  Similarity=0.020  Sum_probs=60.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee-eEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE-AYVQFVDKETAELALQ-KHKERIGH--RYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~-afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~s  101 (141)
                      .++++||||.+|+++|.+.|+.||-|. .|.|..  .    +|+ |||+|.+.++|++|++ +|+..|.+  |.|.|..+
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~-~v~i~~--~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A   99 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNPVGKVQ-RIVIFK--R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA   99 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTTSCEE-EEEEEE--S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred             EEEEcCcCCCCCHHHHHHHHHhcCCEE-EEEEEe--C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence            456789999999999999999998774 588743  2    286 9999999999999998 79999976  79999988


Q ss_pred             chh
Q psy3067         102 RYT  104 (141)
Q Consensus       102 s~~  104 (141)
                      ...
T Consensus       100 k~~  102 (124)
T 2e5i_A          100 RPT  102 (124)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            653

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.23  E-value=1.6e-11  Score=90.14  Aligned_cols=73  Identities=15%  Similarity=0.063  Sum_probs=62.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee-eEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE-AYVQFVDKETAELALQ-KHKERIGH--RYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~-afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~s  101 (141)
                      .++++||||.+|+++|.+.|+.++.|. .|+|..+     .+|+ |||+|.+.++|++|++ +|+..|.+  +.|.|.-+
T Consensus        30 ~I~V~NL~~~vte~~L~~lFs~yG~V~-~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a  103 (130)
T 3zzy_A           30 RIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS  103 (130)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTSSCEE-EEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHhCcCCEE-EEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence            346789999999999999999998774 6887664     2477 9999999999999998 79999977  99999988


Q ss_pred             chh
Q psy3067         102 RYT  104 (141)
Q Consensus       102 s~~  104 (141)
                      +..
T Consensus       104 k~~  106 (130)
T 3zzy_A          104 KLT  106 (130)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            754

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.22  E-value=2.8e-12  Score=92.22  Aligned_cols=70  Identities=3%  Similarity=0.049  Sum_probs=58.3

Q ss_pred             HHHH--hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-----CCeeEE
Q psy3067          26 WKLQ--HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-----GHRYIF   97 (141)
Q Consensus        26 ~~~~--~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-----~~RyIe   97 (141)
                      .+++  +||||++|++||+++|+.+|.+. .|.|+.+      +|+|||+|.++++|++|++ +|+..+     +++.+.
T Consensus        27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~-~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~   99 (114)
T 2cq2_A           27 SLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY   99 (114)
T ss_dssp             EEEEETCTGGGTCCHHHHHHHHHHHSCEE-EEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence            3566  78999999999999999998774 5766432      5899999999999999998 699877     688888


Q ss_pred             EEecc
Q psy3067          98 FTGHR  102 (141)
Q Consensus        98 V~~ss  102 (141)
                      |..+.
T Consensus       100 v~~a~  104 (114)
T 2cq2_A          100 LNFVE  104 (114)
T ss_dssp             EEEES
T ss_pred             EEecc
Confidence            77664

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=86.71  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=56.2

Q ss_pred             HHHhcCCCCCCHHHHH----hhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          27 KLQHTGIVEGKKDDIA----QFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~----~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      ++++||||++++++|+    ++|+.|+  |++  |       +|   |+|||+|.+.++|++|++ +++..+.+|.|.|.
T Consensus        12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~   79 (96)
T 2diu_A           12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--I-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS   79 (96)
T ss_dssp             EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--E-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence            4578999999999855    8999995  443  4       45   999999999999999998 69999999999999


Q ss_pred             ecch
Q psy3067         100 GHRY  103 (141)
Q Consensus       100 ~ss~  103 (141)
                      -+..
T Consensus        80 ~A~~   83 (96)
T 2diu_A           80 FTPK   83 (96)
T ss_dssp             SSCC
T ss_pred             ecCC
Confidence            8864

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.19  E-value=6.9e-12  Score=96.77  Aligned_cols=66  Identities=9%  Similarity=0.120  Sum_probs=57.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR   94 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R   94 (141)
                      ++++|||+++|++||+++|+.++.+ ...|+++.+ . |+++|+|||+|.+.++|.+||. +|+..|+++
T Consensus       126 l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence            6678999999999999999999765 236888877 3 6777999999999999999998 699998877

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.17  E-value=1.3e-11  Score=86.49  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             CCCCHHHHHhhcccCCcccccEEEeecCCC--CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhccc
Q psy3067          34 VEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQHR  108 (141)
Q Consensus        34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~--Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~~  108 (141)
                      |...++||++.|+.+|.|. +|+|+.++.+  ++++|+|||+|.++++|++|++ +|+..++||.|.|..++.....+
T Consensus        25 ~~~~~~dl~~~f~k~G~V~-~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~  101 (105)
T 3v4m_A           25 YEEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR  101 (105)
T ss_dssp             HHHHHHHHHHHHHTTSCEE-EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCEE-EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence            4556799999999998774 6999988433  3789999999999999999997 79999999999999887755443

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.16  E-value=3.4e-11  Score=94.78  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss  102 (141)
                      ++++|||+++|++||+++|+.++.+. .|+|+.+ .    +|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++
T Consensus       210 l~v~nl~~~~~~~~l~~~F~~~G~i~-~v~~~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          210 LFLTNLPEETNELMLSMLFNQFPGFK-EVRLVPG-R----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             EEEeCCCCcCCHHHHHHHHHhcCCeE-EEEEecC-C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence            78899999999999999999997663 6888876 2    5899999999999999999 6999999 9999998664

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.15  E-value=2.1e-11  Score=91.16  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss~  103 (141)
                      ++.+|||+++|++||+++|+.++ .+. .|+++.+ .    +|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++.
T Consensus       123 l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~i~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          123 LHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK-D----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHTTSCCC-EEEESST-T----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHcCCCce-EEEEEeC-C----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence            66789999999999999999998 663 6887665 2    6899999999999999999 7999999 99999987754

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.12  E-value=9.9e-11  Score=84.00  Aligned_cols=70  Identities=7%  Similarity=0.073  Sum_probs=60.7

Q ss_pred             CHHHHHhhcccCCcccccEEEeecCC----CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067          37 KKDDIAQFFDGLEIISNGITLVEDPF----NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH  107 (141)
Q Consensus        37 te~DI~~FFs~~~iv~~~I~i~~d~~----~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~  107 (141)
                      .++||++.|+.||.|. +|+|+.|+.    +++++|+|||+|.++++|++|++ +|+..++||.|.|..+......
T Consensus        38 leedl~eef~k~G~V~-~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~  112 (118)
T 3ue2_A           38 LEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD  112 (118)
T ss_dssp             HHHHHHHHHTTTSCEE-EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred             HHHHHHHHHhccCCEe-EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcc
Confidence            5799999999998774 699998843    46788999999999999999998 6999999999999988775443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.11  E-value=6.8e-11  Score=91.37  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++ .+. .|.++.+     .+|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++.
T Consensus       154 l~V~nlp~~~t~~~l~~~f~~~G~~i~-~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          154 LHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCCEE-EEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EEEeCCCccCCHHHHHHHHHHcCCCee-EEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence            67789999999999999999998 663 5777553     35899999999999999999 7999999 99999988764

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=1e-10  Score=81.78  Aligned_cols=63  Identities=27%  Similarity=0.276  Sum_probs=53.9

Q ss_pred             CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      +++||+++|+.++.+. .|.| .| .  .++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus        39 ~e~~l~~~f~~~G~v~-~v~i-~~-~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~  102 (112)
T 2dit_A           39 IREDLRVECSKFGQIR-KLLL-FD-R--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT  102 (112)
T ss_dssp             HHHHHHHHGGGTSCCS-EEEE-ET-T--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHHHHccCCEe-EEEE-ec-C--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            4689999999998774 5755 66 2  389999999999999999997 6999999999999988763

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=5e-10  Score=78.26  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          34 VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++|++||+++|+.|+-|. .|.|+     ++++|+|||+|.+.++|++|++. ...+.+|.|.|..+..
T Consensus        27 ~~~te~~L~~~F~~~G~V~-~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~   89 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVL-NLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEG   89 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEE-EEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSC
T ss_pred             CCCCHHHHHHHHHhcCCEE-EEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccC
Confidence            4578999999999997663 58776     57899999999999999999987 4556789999987654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.94  E-value=4.5e-10  Score=89.86  Aligned_cols=71  Identities=17%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             HHHHhcCCCCC---------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC----
Q psy3067          26 WKLQHTGIVEG---------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI----   91 (141)
Q Consensus        26 ~~~~~gLp~s~---------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i----   91 (141)
                      .++++|||+++         +|++|++.|+.+|.|. +|+|+.+      +|+|||.|.+.++|+.|++ +|++.|    
T Consensus       136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~-~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~  208 (240)
T 3u1l_A          136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID-RIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLLPS  208 (240)
T ss_dssp             EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE-EEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred             eeecCCCChhhhcccccccCcHHHHHHHHHccCCEE-EEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence            35678999998         7999999999998774 6888753      6899999999999999997 799999    


Q ss_pred             --------CCeeEEEEecch
Q psy3067          92 --------GHRYIFFTGHRY  103 (141)
Q Consensus        92 --------~~RyIeV~~ss~  103 (141)
                              .+|.|.|.-+..
T Consensus       209 ~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          209 DKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             STTGGGGGGSCCCEEEECC-
T ss_pred             cccccccCCCCEEEEEEccC
Confidence                    899999998865

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.93  E-value=1.4e-09  Score=77.54  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067          37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH  107 (141)
Q Consensus        37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~  107 (141)
                      .++||++.|+.+|.|. +|.|..+ .   ++|+|||+|.++++|++|++ +|+..++||.|.|..+.....+
T Consensus        30 l~edl~~~f~kfG~V~-~v~i~~~-~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~   96 (114)
T 3s6e_A           30 IKDDVIEECNKHGGVI-HIYVDKN-S---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYH   96 (114)
T ss_dssp             HHHHHHHHHTTTTCCS-EEEECTT-C---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred             HHHHHHHHHhccCCEE-EEEEecC-C---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHH
Confidence            4689999999998774 6887655 2   58999999999999999998 7999999999999998765543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.72  E-value=3.3e-08  Score=75.81  Aligned_cols=71  Identities=7%  Similarity=0.067  Sum_probs=60.0

Q ss_pred             CCHHHHHhhcccCCcccccEEEeec----CCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067          36 GKKDDIAQFFDGLEIISNGITLVED----PFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH  107 (141)
Q Consensus        36 ~te~DI~~FFs~~~iv~~~I~i~~d----~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~  107 (141)
                      -.++||++.|+.+|-|. +|.|+.+    +.+|+++|++||+|.+.++|++|++ +|+..++||.|.+..+.....+
T Consensus       141 e~~~dl~~e~~~~G~v~-~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~  216 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD  216 (222)
T ss_dssp             THHHHHHHHHTTTSCEE-EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred             HHHHHHHHHHHccCCeE-EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence            36789999999998774 6888855    2345999999999999999999998 7999999999999988765543

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.70  E-value=1.1e-08  Score=85.61  Aligned_cols=58  Identities=3%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             HHHhc--CCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC
Q psy3067          27 KLQHT--GIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI   91 (141)
Q Consensus        27 ~~~~g--Lp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i   91 (141)
                      ++++|  |+|.+||+||++.|+.+|-|. +|.+..      .+|+|||+|.+.++|++|++ +|+..+
T Consensus        21 l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~   81 (345)
T 3tht_A           21 LVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV   81 (345)
T ss_dssp             EEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence            44544  799999999999999998774 565532      35899999999999999998 688766

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.45  E-value=2.1e-07  Score=67.51  Aligned_cols=69  Identities=12%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             HHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC-HHHHHHHHHH---cCCcCCCeeEEEEecc
Q psy3067          28 LQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD-KETAELALQK---HKERIGHRYIFFTGHR  102 (141)
Q Consensus        28 ~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s-~e~a~~AL~k---~~~~i~~RyIeV~~ss  102 (141)
                      +.+||+++ +|++||+++|+.++-|. .|.++.+    ..  +|||.|.+ +++|.+|++.   ++-.|.+..+.+...+
T Consensus        22 ~v~~l~~~~~sredLke~F~~~G~V~-~Vd~~~g----~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~   94 (121)
T 1owx_A           22 KFSGDLDDQTCREDLHILFSNHGEIK-WIDFVRG----AK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE   94 (121)
T ss_dssp             EEEESCCSSCCHHHHHHHTCSSCCEE-EEECCTT----CS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred             EEecCCCCcCCHHHHHHHHHhcCCEE-EEEEecC----CC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence            34789999 99999999999997663 5777666    22  49999999 8899999985   3678888888887766


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      -
T Consensus        95 G   95 (121)
T 1owx_A           95 G   95 (121)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=4.6e-07  Score=62.87  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .+|.+-|+.||-+ ..|+++.|        .+||+|.+.++|.+|+++|+..++||.|.|..+++
T Consensus        30 ~~L~~~F~~~G~V-i~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           30 DELLQQFASFGEV-ILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSP   85 (91)
T ss_dssp             HHHHHHHHTTCCE-EEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred             HHHHHHHHhCCCe-EEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence            6799999999844 24898887        28999999999999999999999999999999875

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.17  E-value=1.3e-06  Score=61.02  Aligned_cols=55  Identities=16%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .+|.+-|+.||.+ ..|+++.| +       +||+|.+.++|.+||++|+..+++|.|.|..-+
T Consensus        39 ~~L~~~F~~~G~V-ilvr~v~d-~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~   93 (95)
T 1ufw_A           39 TELMQTLGSYGTI-VLVRINQG-Q-------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS   93 (95)
T ss_dssp             HHHHHHHHHHSCC-SEEEEETT-E-------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred             HHHHHHHHHCCCE-EEEEEecC-c-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence            5699999999744 25999998 2       999999999999999999999999999998644

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.00029  Score=50.67  Aligned_cols=74  Identities=27%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             HHHHHHHHHh-------------cCCCCCCHHHHHhhcccC-----C-cccccEEEeecCCCCCcceeeEEEeCCHHHHH
Q psy3067          21 RQEMDWKLQH-------------TGIVEGKKDDIAQFFDGL-----E-IISNGITLVEDPFNGRPTGEAYVQFVDKETAE   81 (141)
Q Consensus        21 ~~d~~~~~~~-------------gLp~s~te~DI~~FFs~~-----~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~   81 (141)
                      .+|+..++.+             +||-++++.-|+.|.+++     + +++  |.+.-| ..|     |.|+|.+..+|-
T Consensus         5 RqeVk~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--I~L~pD-H~G-----Aivef~d~~~Ag   76 (117)
T 2l9w_A            5 RNEVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--ILLVSD-FNG-----AIIIFRDSKFAA   76 (117)
T ss_dssp             HHHHHHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--EEEETT-TTE-----EEEECSCHHHHH
T ss_pred             HHHHHHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--EEEecC-CCc-----eEEEEccchhhH
Confidence            4666666663             689999999999999998     5 433  777777 443     999999998886


Q ss_pred             HHH-HHcCCcCCCeeEEEEecc
Q psy3067          82 LAL-QKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        82 ~AL-~k~~~~i~~RyIeV~~ss  102 (141)
                      +|. +.|+..+++|.|.+-...
T Consensus        77 KasLaL~G~ef~gr~Lr~gTv~   98 (117)
T 2l9w_A           77 KMLMILNGSQFQGKVIRSGTIN   98 (117)
T ss_dssp             HHHHHHSSEEETTEEEEEECHH
T ss_pred             HHHhhcCCeeecCeEEEecCHH
Confidence            666 789999999999876543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=97.15  E-value=0.00021  Score=51.44  Aligned_cols=43  Identities=19%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             EEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEE
Q psy3067          55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFT   99 (141)
Q Consensus        55 I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~   99 (141)
                      +.|+.+.  .+++|+|||+|.++++|++|++. +.....+..+.+.
T Consensus         3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~   46 (158)
T 2kn4_A            3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD   46 (158)
T ss_dssp             EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc
Confidence            6777872  37999999999999999999974 4443333333333

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=96.38  E-value=0.014  Score=42.01  Aligned_cols=64  Identities=17%  Similarity=0.003  Sum_probs=47.4

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCC-eeEEEEecc
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGH-RYIFFTGHR  102 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~-RyIeV~~ss  102 (141)
                      |.|-+. ...|.+.|+.|+.+   +..... .   ....-+|.|+++.+|++||++|+..+++ =-|-|.+|.
T Consensus        31 GFp~~~-~~~VL~~F~~~G~I---v~~~~~-~---~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~   95 (119)
T 1wwh_A           31 GFPQAS-ASYILLQFAQYGNI---LKHVMS-N---TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   95 (119)
T ss_dssp             CCCGGG-HHHHHHHHHTTSCE---EEEEEC-S---SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             CCCHHH-HHHHHHHHHhhCcE---EEeccC-C---CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence            555443 47788999999644   222222 1   2357999999999999999999999986 458999985

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.19  E-value=0.01  Score=41.84  Aligned_cols=68  Identities=9%  Similarity=0.014  Sum_probs=54.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccC-----CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGL-----EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~-----~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      |.+.|||-++.++-|.-||+.-     +.+. +|.  ++   +   +-|.|.|.+.+.|++.|++..+.+.+-.|.|++.
T Consensus        11 I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~--~~---~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~   81 (104)
T 2dhx_A           11 VEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQ--RL---G---CGGVLTFREPADAERVLAQADHELHGAQLSLRPA   81 (104)
T ss_dssp             EEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEE--EE---T---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred             EEEECCCCCCChhHheEEEeCCCcCCCceee-EEE--Ec---C---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence            4457999999999999999973     3332 233  23   2   5799999999999999999899999999999997


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      ..
T Consensus        82 ~~   83 (104)
T 2dhx_A           82 PP   83 (104)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=95.80  E-value=0.02  Score=40.08  Aligned_cols=47  Identities=28%  Similarity=0.405  Sum_probs=41.4

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK   86 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k   86 (141)
                      +.|-+..-.||.+.|++|+-+.  |..+-|       -.|||.|.+++.|..||..
T Consensus        22 ~FP~ewKt~DI~~lFs~fggv~--I~WidD-------TsAlvvf~~~~~a~~al~~   68 (100)
T 1whv_A           22 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-------TSAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             ECCTTCCHHHHHHHHTTTCSCC--CEEEET-------TEEEEECSCHHHHHHHHHH
T ss_pred             eCChhhhhHHHHHHhhccCCEE--EEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence            6799999999999999997554  888888       2699999999999999983

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=95.65  E-value=0.0047  Score=44.05  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             CCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEecch
Q psy3067          63 NGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGHRY  103 (141)
Q Consensus        63 ~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~ss~  103 (141)
                      ..+..|+++|+|.++++|++|++ + |+..++| .|.+..++.
T Consensus         9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~   50 (150)
T 2i2y_A            9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK   50 (150)
T ss_dssp             CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred             cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence            34789999999999999999996 6 8999999 999987764

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=95.06  E-value=0.014  Score=42.79  Aligned_cols=71  Identities=7%  Similarity=0.014  Sum_probs=48.2

Q ss_pred             cCCCCCCHHHHHhhcccCC-cccccEEEeec--------CCCCC-----cceeeEEEeCCHHHHHHHHHHcCCcCCCeeE
Q psy3067          31 TGIVEGKKDDIAQFFDGLE-IISNGITLVED--------PFNGR-----PTGEAYVQFVDKETAELALQKHKERIGHRYI   96 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d--------~~~Gr-----~~G~afV~F~s~e~a~~AL~k~~~~i~~RyI   96 (141)
                      |-|-+ ...-|.+.|+.|| |++ .+....+        +..-+     ...-..|.|+|+.+|++||.+|++.++|--|
T Consensus        14 GFp~~-~~~~VI~~Fs~~G~IlE-~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mI   91 (132)
T 3p3d_A           14 GYPET-MANQVIAYFQEFGTILE-DFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLL   91 (132)
T ss_dssp             CCCGG-GHHHHHHHHGGGSCBCS-CCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEEC
T ss_pred             ecCHH-HHHHHHHHHHhhceEee-eccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEE
Confidence            44433 3456778889995 443 2322110        00011     2345689999999999999999999999999


Q ss_pred             EEEecch
Q psy3067          97 FFTGHRY  103 (141)
Q Consensus        97 eV~~ss~  103 (141)
                      -|.+++.
T Consensus        92 GV~Py~~   98 (132)
T 3p3d_A           92 GVIPYTK   98 (132)
T ss_dssp             EEEECCH
T ss_pred             EEEECCH
Confidence            9999975

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=94.76  E-value=0.021  Score=40.07  Aligned_cols=47  Identities=28%  Similarity=0.402  Sum_probs=41.2

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK   86 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k   86 (141)
                      +.|-+..-.||.+.|++|+-+.  |..+-|       -.|||.|.+++.|..||..
T Consensus        12 ~FP~ewKt~Di~~lFs~fggv~--I~WidD-------TsAlvvf~~~~~a~~al~~   58 (101)
T 3ctr_A           12 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-------TSAFVSLSQPEQVKIAVNT   58 (101)
T ss_dssp             ECCTTCCHHHHHHHTTTSEEEE--EEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred             eCChhhhhHHHHHHHhccCCEE--EEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence            6799999999999999997553  888887       2699999999999999984

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=87.78  E-value=0.54  Score=31.90  Aligned_cols=64  Identities=9%  Similarity=0.038  Sum_probs=44.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHHH-cCCc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG--RPTGEAYVQFVDKETAELALQK-HKER   90 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~k-~~~~   90 (141)
                      ++++|.||.+.||++..+-++++.-. +....+..+.+.  ..-.-|||.|.+.+++..-.++ |++.
T Consensus         3 KvVIRrLPP~LteeeF~~~l~~~~~~-d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~   69 (91)
T 1uw4_A            3 KVVIRRLPPTLTKEQLQEHLQPMPEH-DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV   69 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCCCE-EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred             EEEEeCCCCCCCHHHHHHHhcCcccc-eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence            35679999999999999999987533 233333321111  2334699999999998887774 6653

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=80.27  E-value=1.4  Score=29.90  Aligned_cols=31  Identities=48%  Similarity=0.821  Sum_probs=26.4

Q ss_pred             CCcCCCCceeEEEEEecHHHHHHHHHhcCCC
Q psy3067           4 CRTGEVSDRYIEVFKVRRQEMDWKLQHTGIV   34 (141)
Q Consensus         4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~   34 (141)
                      .|++.|+.|+|+|..++.+|+++++.+.-|-
T Consensus        80 ~~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~  110 (118)
T 2db1_A           80 KDRESMGHRYIEVFKSHRTEMDWVLKHSGPN  110 (118)
T ss_dssp             GTTEEETTEEEEEEEECHHHHHHHHHTTSSC
T ss_pred             cCCCeECCeEEEEEECCHHHHHHHHHHhCCC
Confidence            4678899999999999999999988865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1wela1	112	d.58.7.1 (A:412-523) RNA-binding protein 12 {Human	0.003
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	0.003

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 60 DPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
             NG+ TGE +V+F ++   + AL +HK+ +G+R+I
Sbjct: 53 YGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 89

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHR 94
           + +I + F     +       +    G   G  +V F+ K+ A+ A     H   +  R
Sbjct: 21 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 80

Query: 95 YI 96
           +
Sbjct: 81 RL 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.87
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.85
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.85
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.84
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.8
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.79
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.79
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.79
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.77
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.77
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.77
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.77
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.76
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.76
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.76
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.75
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.75
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.74
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.74
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.74
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.74
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.73
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.73
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.73
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.73
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.73
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.72
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.72
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.72
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.71
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.71
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.71
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.71
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.71
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.7
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.7
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.69
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.69
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.67
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.67
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.66
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.66
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.65
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.64
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.64
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.64
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.62
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.62
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.59
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.58
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.58
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.57
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.56
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.55
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.54
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.53
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.52
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.51
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.5
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.5
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.5
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.48
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.48
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.47
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.47
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.45
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.45
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.43
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.42
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.41
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.4
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.39
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.37
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.36
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.35
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.33
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.32
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.31
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.3
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.24
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.06
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.96
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.95
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.84
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.81
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	94.97
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	93.93
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	92.82
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	81.52

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-23  Score=142.53  Aligned_cols=81  Identities=49%  Similarity=0.711  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .|+++||||++|++||++||++++++...|+++.+ .+|+++|+|||+|.++++|++||++|++.|++|+|+|.+++..+
T Consensus        17 ~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~-~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~~   95 (104)
T d1wg5a_          17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeC-CCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHHH
Confidence            46789999999999999999999988655666666 89999999999999999999999999999999999999998866


Q ss_pred             cc
Q psy3067         106 QH  107 (141)
Q Consensus       106 ~~  107 (141)
                      ..
T Consensus        96 ~~   97 (104)
T d1wg5a_          96 VR   97 (104)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-22  Score=139.96  Aligned_cols=77  Identities=27%  Similarity=0.326  Sum_probs=71.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .|+++||||++|++||++||+.++++.  |+++++ .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++...
T Consensus        17 ~v~v~nLp~~~te~dl~~~F~~~~~~~--v~~~~~-~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~~~   93 (102)
T d1weza_          17 CVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHSSCSCCCSE--EEEEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHhccCcce--eeeEEe-cCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            577899999999999999999999875  999999 88999999999999999999999999999999999999988643

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-22  Score=141.99  Aligned_cols=80  Identities=25%  Similarity=0.405  Sum_probs=73.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      .++++||||++|++||++||++++++.+.+.+..+ .+|+++|+|||+|.+.++|++||++|+..|++|+|+|++++..+
T Consensus        20 ~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~-~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~~~~   98 (112)
T d1wela1          20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG   98 (112)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             EEEEecCCCcCcHHHHhhHHhhccccccceeeecC-cccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcChHH
Confidence            56789999999999999999999988766777777 89999999999999999999999999999999999999998755


Q ss_pred             c
Q psy3067         106 Q  106 (141)
Q Consensus       106 ~  106 (141)
                      +
T Consensus        99 ~   99 (112)
T d1wela1          99 M   99 (112)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.5e-22  Score=136.50  Aligned_cols=79  Identities=23%  Similarity=0.311  Sum_probs=73.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~  105 (141)
                      +|+++||||++|++||++||+.++++...|+++.+ .+|+++|+|||+|.|+++|++||++|+..|+||.|.|.+++..+
T Consensus        10 ~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~-~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~~~~   88 (103)
T d2cpya1          10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-NNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED   88 (103)
T ss_dssp             EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-TTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred             EEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeC-CCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECCHHH
Confidence            57789999999999999999999988767888888 89999999999999999999999999999999999999987643

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.3e-20  Score=124.61  Aligned_cols=74  Identities=27%  Similarity=0.352  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ++++||||++|++||++||+.++.+.+.+++..+ .+|+++|+|||+|.++++|++|++ +|+..|++|+|+|..+
T Consensus        12 l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~-~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          12 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             EEEECCCCCCCHHHHHHHHhhcccceeEEEEEeC-CCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            5678999999999999999999888767888888 899999999999999999999998 5999999999999753

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.4e-20  Score=124.61  Aligned_cols=74  Identities=14%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++++||||++|++||+++|+.++.+ .+|.|+.|+.+|+++|+|||+|.++++|++||+++++.|+||.|+|..+
T Consensus         3 lfV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           3 MFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCC-CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCc-ceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            4678999999999999999999766 3699999988899999999999999999999999999999999999764

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-20  Score=122.59  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++++||||++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.+++.|+||.|+|..+
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~-~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVV-DCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhcccc-ccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            46789999999999999999998774 699999988999999999999999999999999999999999998643

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7e-20  Score=122.69  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=70.6

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ..++++||||++|++||+++|+.||.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.+++.|+||.|.|..+
T Consensus         7 ~~lfV~nlp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1           7 RKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             GEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             cEEEEECCCCCCCHHHHHHHHHhhcccc-ceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            3578899999999999999999997773 699999988899999999999999999999999999999999999876

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-20  Score=120.02  Aligned_cols=74  Identities=14%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++++||||++|++||+++|+.++.+. .+.++.|+.+|+++|+|||+|.+++++++||++|++.|+||.|.|..+
T Consensus         5 lfV~nLp~~~te~~l~~~F~~~G~i~-~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           5 IFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             EEEECCTTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             EEECCCCCcCCHHHHHHHHHHhcccc-ccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            56789999999999999999998774 689999988999999999999999999999999999999999999765

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-19  Score=122.55  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++||||++|++||+++|+.+|.+. +|+|+.|+.+|+++|+|||+|.++++|++||+ +.+.|+||.|.|..+..
T Consensus        10 ~lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a~~   85 (90)
T d2cqga1          10 DLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNS   85 (90)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred             eEEEECCCCCCCHHHHHHHHHhhcccc-eeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeCCC
Confidence            467899999999999999999997663 69999998889999999999999999999998 45689999999998865

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.7e-20  Score=122.86  Aligned_cols=74  Identities=15%  Similarity=0.243  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++++||||++|++||+++|+.+|.+. .|+|+.|+.+|+++|+|||+|.++++|++||+.+.+.|+||.|+|..+
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~-~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEE-EEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcc-cccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            46789999999999999999997663 699999988999999999999999999999999889999999998753

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.1e-19  Score=117.89  Aligned_cols=74  Identities=16%  Similarity=0.246  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      ++++|||+++|++||++||+.++.+. .+.++.++.+|+++|+|||+|.++++|++||+.|++.|+||.|+|..+
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~-~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCS-EECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcc-eeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            46789999999999999999998774 688888878899999999999999999999999999999999999764

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=125.76  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .-.++++||||++|++||+++|+.|+.+. +++|+.|+.+++++|+|||+|.+.++|++||+.+++.|+||.|.|..+..
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~~   98 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA   98 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCccc-ceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECcc
Confidence            33578999999999999999999997773 79999998889999999999999999999999999999999999998876


Q ss_pred             hh
Q psy3067         104 TV  105 (141)
Q Consensus       104 ~~  105 (141)
                      .+
T Consensus        99 ke  100 (103)
T d1x4ba1          99 RE  100 (103)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-19  Score=125.38  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=71.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||++||+.||.|. +|+|+.|+.+|+++|+|||+|.++++|++||++|+..|+||.|.|..+..
T Consensus        20 tifV~nL~~~~te~~l~~~F~~~G~V~-~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~~   96 (101)
T d2cq4a1          20 TVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA   96 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHcCCCeEE-EEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCC
Confidence            389999999999999999999997774 69999997889999999999999999999999999999999999998754

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-19  Score=117.87  Aligned_cols=76  Identities=20%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus         3 lfV~nL~~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1           3 LYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCEe-EEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            46789999999999999999998774 69999998889999999999999999999997 699999999999988754

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.2e-19  Score=117.69  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +++|||+++|++||+++|+.++.+...++++.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.|..+..
T Consensus         2 fV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1           2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             EEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred             EEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecC
Confidence            5789999999999999999997664457889998899999999999999999999997 699999999999998865

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.8e-19  Score=119.88  Aligned_cols=76  Identities=17%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++||||++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.+.++|++||+ +|+..+++|.|.|..+..
T Consensus        11 lfV~nL~~~~t~~~l~~~F~~~g~v~-~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~   87 (99)
T d1whwa_          11 LFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             EEEECCCCcCCHHHHHHHHHhcCCce-eeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            67899999999999999999997663 69999998899999999999999999999997 699999999999999876

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=5e-19  Score=116.27  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||+++|++||++||+.||.+. .|+|+.| ..+ .+|+|||+|.++++|++||++|++.|+||.|.|..++
T Consensus         3 v~V~nlp~~~t~~~l~~~F~~~G~I~-~v~~~~~-~~~-~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~T   75 (75)
T d2ghpa2           3 VLVKNLPKSYNQNKVYKYFKHCGPII-HVDVADS-LKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT   75 (75)
T ss_dssp             EEEEEECTTCCHHHHHHHHGGGSCEE-EEEEEEC-TTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHhcCCceE-EEEEEee-ccc-cceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEECC
Confidence            45789999999999999999998774 7999998 444 4589999999999999999999999999999998764

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.4e-19  Score=118.00  Aligned_cols=78  Identities=14%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.+|.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ .|+..|+||.|.|..++...
T Consensus         4 lfV~nlp~~~te~~l~~~F~~~G~v~-~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~   82 (85)
T d2u2fa_           4 LFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA   82 (85)
T ss_dssp             EEEETCCSSCCSHHHHHHHTSSSCEE-EEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCccc-eEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            57789999999999999999998774 69999998889999999999999999999999 59999999999999987643

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=120.23  Aligned_cols=76  Identities=24%  Similarity=0.326  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecC-CCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP-FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~-~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++||||++|++||++||+.|+++.  ++++.++ .+|+++|+|||+|.++++|++|+++|+..|++|.|.|..+..
T Consensus        17 ~v~V~nLp~~~te~~l~~~f~~~g~~~--~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~   93 (104)
T d1wi8a_          17 TAFLGNLPYDVTEESIKEFFRGLNISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ   93 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHTTTSCEEE--EECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhcccc--ceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            367899999999999999999999875  7776663 478999999999999999999999999999999999998865

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=7.6e-19  Score=115.77  Aligned_cols=74  Identities=20%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||+++|++||+++|+.++.+. .|+|+.| .+|+++|+|||+|.++++|++|++ .|+..++||.|.|..++
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~-~~~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLK-KAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEE-EEEESCS-SCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCe-EEEEEEe-eccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            46789999999999999999997773 6999999 799999999999999999999998 69999999999998764

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.74  E-value=1e-18  Score=115.37  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.|..+.+
T Consensus         5 l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1           5 LIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcc-eeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            56789999999999999999998774 69999998899999999999999999999997 799999999999987753

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=120.36  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.+.++|++|++.....|+||.|.|..+..
T Consensus        12 ~lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~   88 (103)
T d2cqda1          12 KIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL   88 (103)
T ss_dssp             EEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred             EEEEeCCCCcCcHHHHHHHHhhccccc-ceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCC
Confidence            378899999999999999999997663 69999998889999999999999999999999766689999999988765

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=118.36  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=72.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..++..
T Consensus        11 tlfV~nLp~~~t~~~l~~~F~~~G~v~-~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          11 TVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcc-ccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            467899999999999999999997763 69999998899999999999999999999997 6999999999999998774


Q ss_pred             hc
Q psy3067         105 VQ  106 (141)
Q Consensus       105 ~~  106 (141)
                      .+
T Consensus        90 ~~   91 (93)
T d1x5ua1          90 NK   91 (93)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-18  Score=114.69  Aligned_cols=72  Identities=19%  Similarity=0.190  Sum_probs=66.7

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF   98 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV   98 (141)
                      .++++|||+++|++||+++|+.++.+. +|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|
T Consensus        11 ~l~V~nL~~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          11 CLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCc-cccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            467899999999999999999998773 69999998889999999999999999999997 7999999999987

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-18  Score=117.04  Aligned_cols=76  Identities=18%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.+|.+. +|.|+.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+.+
T Consensus         8 lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p   84 (89)
T d2cqba1           8 LYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP   84 (89)
T ss_dssp             EEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHhhCCeEE-ecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            56789999999999999999997663 69999998889999999999999999999997 699999999999998865

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-18  Score=115.28  Aligned_cols=74  Identities=12%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH  101 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s  101 (141)
                      .|+++|||+++|++||++||+.+|.+. +|.|+.+ .+|+++|+|||+|.++++|++||+.++..++||.|.|...
T Consensus         8 tvfV~nlp~~~te~~l~~~F~~~G~v~-~v~l~~~-~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2           8 SVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK   81 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEEC-TTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEG
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccc-cceeeee-ccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            367899999999999999999998774 6999998 7999999999999999999999999999999999999753

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-18  Score=118.61  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          23 EMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        23 d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ++-.++++|||+++|++||++||+.++-+ .+|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+
T Consensus         7 ~~rtl~V~nLp~~~te~~l~~~f~~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a   85 (104)
T d1p1ta_           7 SLRSVFVGNIPYEATEEQLKDIFSEVGPV-VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA   85 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCC-SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccc-cccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            34347889999999999999999999766 369999998899999999999999999999998 4999999999999988


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      ..
T Consensus        86 ~~   87 (104)
T d1p1ta_          86 AS   87 (104)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.5e-18  Score=112.01  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=69.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.+|.+. .|+|+.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+.+
T Consensus         5 l~V~nLp~~~te~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1           5 LIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCcc-cccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            56789999999999999999997663 69999998889999999999999999999997 699999999999987754

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-18  Score=115.83  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      ++++|||+++|++||++||+.++.+. .|.++.++.+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+...
T Consensus         8 ifV~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~   85 (90)
T d1x5sa1           8 LFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   85 (90)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             EEEECCCCcCCHHHHHHhhhcccccc-ceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            67899999999999999999997663 68888887889999999999999999999997 6999999999999988653

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.2e-18  Score=113.77  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC---CcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG---RPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G---r~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      +++|||+++|++||+++|+.|+.+. +|.|+.|+.++   +++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus         2 fV~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1           2 FIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCcc-ccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            5789999999999999999997663 68998885444   679999999999999999997 599999999999988754

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.7e-18  Score=113.24  Aligned_cols=76  Identities=9%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+.+
T Consensus         4 l~v~nLp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1           4 LWMTNFPPSYTQRNIRDLLQDINVVA-LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHTTCCC-CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEECCCCcCCHHHHHHHHHHhCcEE-eeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            46789999999999999999998774 46666666889999999999999999999997 699999999999988764

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.4e-18  Score=116.51  Aligned_cols=78  Identities=15%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .|+++|||+++|++||+++|+.++.+. .+.++.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.|..+...
T Consensus        20 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          20 NLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK   98 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhcccc-ccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            478899999999999999999996553 59999998899999999999999999999997 7999999999999988663

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=8e-18  Score=113.07  Aligned_cols=75  Identities=21%  Similarity=0.122  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.+.++|++|++ .|+..++||.|.|.-|.
T Consensus        10 l~V~nL~~~~t~~~l~~~F~~~G~i~-~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_          10 LFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHcCCcc-cccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            67899999999999999999997663 69999998899999999999999999999997 69999999999998764

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.71  E-value=5.8e-18  Score=121.80  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.||.+. +|.|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|+||.|.|..+...
T Consensus        44 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          44 NLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhcccc-ccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            478899999999999999999997663 69999998889999999999999999999998 6999999999999998764


Q ss_pred             hcc
Q psy3067         105 VQH  107 (141)
Q Consensus       105 ~~~  107 (141)
                      ..+
T Consensus       123 ~~~  125 (139)
T d1u6fa1         123 HQR  125 (139)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            433

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.70  E-value=6.7e-19  Score=119.55  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=69.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.|+.+. ++.|+.+ .+|+++|+|||+|.++++|++||++|+..++||.|.|..+..
T Consensus        15 ~ifV~nL~~~~te~~l~~~F~~~G~i~-~~~v~~~-~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          15 NLFIGNLNPNKSVAELKVAISELFAKN-DLAVVDV-RTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHH-TCCCCEE-EEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred             EEEEeCccCcchHHHHHHHHhcCCcEE-Eeeeeec-CCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecCC
Confidence            467899999999999999999998764 6888777 899999999999999999999999999999999999998754

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-17  Score=112.56  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=70.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++|||+++|++||+++|+.+|.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ .|+..+++|.|.|..+.+
T Consensus        10 ~i~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp   87 (90)
T d2cq0a1          10 TIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP   87 (90)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccc-cccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeC
Confidence            367889999999999999999998774 69999998889999999999999999999998 599999999999988765

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.69  E-value=1.7e-17  Score=110.47  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH--RYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~s  101 (141)
                      ++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ .|+..+.+  |+|.|..+
T Consensus         9 lfV~nlp~~~te~~l~~~F~~~G~i~-~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2           9 LYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhhCCEe-eeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            67789999999999999999998774 69999998899999999999999999999998 59888865  88988653

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.7e-17  Score=112.58  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||+++|+++|+++|+.++.+. +|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|.-+.
T Consensus        10 lfV~nlp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_          10 LYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHCCcc-eeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            56789999999999999999997773 69999998899999999999999999999998 59999999999997664

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=7.4e-18  Score=112.79  Aligned_cols=77  Identities=21%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             HHHHhcCCCCCC-HHHHHhhcccCCcccccEEEeec-CCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGK-KDDIAQFFDGLEIISNGITLVED-PFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~t-e~DI~~FFs~~~iv~~~I~i~~d-~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++| +++|+++|+.||.+. .|+|+.+ +.+|+++|+|||+|.+.++|++||++|+..++||.|.|..+.+
T Consensus         6 ~l~V~nLp~~~t~ed~l~~~F~~~G~i~-~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3           6 EIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK   84 (86)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred             EEEEECCCCCcccHHHHHHHHHhhhhcc-ceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcCC
Confidence            357789999986 556999999997763 6888664 4689999999999999999999999999999999999998764

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.8e-17  Score=111.17  Aligned_cols=78  Identities=22%  Similarity=0.212  Sum_probs=70.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCccc-------ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIIS-------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF   97 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~-------~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe   97 (141)
                      .|+++|||+++|++||++||+.+|.+.       ..+.+..|+.+|+++|+|||+|.++++|.+|++ +|+..++||.|.
T Consensus        10 ~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~   89 (101)
T d2cpea1          10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK   89 (101)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEE
Confidence            467899999999999999999997542       357888888889999999999999999999998 699999999999


Q ss_pred             EEecch
Q psy3067          98 FTGHRY  103 (141)
Q Consensus        98 V~~ss~  103 (141)
                      |..+..
T Consensus        90 V~~a~~   95 (101)
T d2cpea1          90 VSLARK   95 (101)
T ss_dssp             EECSSC
T ss_pred             EEEcCC
Confidence            998865

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.9e-17  Score=108.10  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEe
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH--RYIFFTG  100 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~  100 (141)
                      ++++|||+++|++||+++|+.+|.+. .|+|+.|+.+|+++|+|||+|.++++|++|++ .|+..++|  +.|.|.-
T Consensus         9 lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2           9 LYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcc-ccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            67899999999999999999997763 69999998889999999999999999999997 69999987  4577753

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.1e-17  Score=110.86  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecC-CCCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP-FNGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~-~~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.+|-+. +|+|+.|+ .+|+++|+|||+|.+.++|++||+ + |+..++||.|.|..|.
T Consensus        10 ~l~V~nLp~~~~e~~l~~~F~~~G~i~-~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~   88 (94)
T d2cpha1          10 KILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD   88 (94)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCce-EEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcC
Confidence            367899999999999999999997663 69998873 479999999999999999999998 4 7889999999999887


Q ss_pred             hhh
Q psy3067         103 YTV  105 (141)
Q Consensus       103 ~~~  105 (141)
                      .++
T Consensus        89 ~~~   91 (94)
T d2cpha1          89 SEV   91 (94)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.1e-17  Score=105.82  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=62.4

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeE
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYI   96 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyI   96 (141)
                      +++|||+++|++||+++|+.++.+. .++++.++.+|+++|+|||+|.++++|++|++ +|+..++||.|
T Consensus         2 yV~nLp~~~te~~l~~~F~~~G~v~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~   70 (72)
T d1x4ea1           2 YIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA   70 (72)
T ss_dssp             EEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred             EEeCCCCcCCHHHHHHHHhhhcccc-ccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEC
Confidence            5689999999999999999998774 68899988899999999999999999999997 69999999875

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=8.1e-17  Score=108.79  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-c------CCcCCCeeEEE
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-H------KERIGHRYIFF   98 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~------~~~i~~RyIeV   98 (141)
                      .|+++||||++|++||+++|+.++.+. .+.++.++.+++++|+|||+|.+.++|.+||+. +      +..++||.|.|
T Consensus        10 tlfV~nLp~~~te~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v   88 (98)
T d1x4ha1          10 TVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV   88 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred             EEEEcCCCCcCCHHHHHHHHhccccce-eeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEE
Confidence            478899999999999999999997663 588888878899999999999999999999984 3      45688999999


Q ss_pred             Eecch
Q psy3067          99 TGHRY  103 (141)
Q Consensus        99 ~~ss~  103 (141)
                      ..+..
T Consensus        89 ~~a~~   93 (98)
T d1x4ha1          89 DLAVT   93 (98)
T ss_dssp             ECCCC
T ss_pred             EECCC
Confidence            98765

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.6e-17  Score=108.94  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.++.+. .++|+.| . +.++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~-~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          10 NIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCD-E-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCEE-EEEECCB-T-TBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCce-EEEEEee-c-CCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            477899999999999999999997763 6999998 3 4578999999999999999997 699999999999998865

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=107.38  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.|. .|.++.| . +.++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus        14 l~v~nLp~~~t~~~L~~~F~~~G~v~-~v~~~~~-~-~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          14 LHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFN-E-RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             EEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECC-T-TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             EEEECCCCCCCHHHHHHHHhhcceee-ecccccc-c-cCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            67889999999999999999998774 6999998 4 4479999999999999999997 699999999999998865

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-16  Score=117.67  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             cCCCCceeEEEEEecHHHH----------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeC
Q psy3067           6 TGEVSDRYIEVFKVRRQEM----------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFV   75 (141)
Q Consensus         6 ~~~ig~RyIEv~~~~~~d~----------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~   75 (141)
                      ...++.+.+.+......+.          ..++++|||+++|+++|+++|+.++.+. .+.++.|+.+|+++|+|||+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~-~~~i~~~~~~~~~~g~~fV~f~  147 (183)
T d1u1qa_          69 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFD  147 (183)
T ss_dssp             SCEETTEECEEEECCCTTGGGSTTTTCCCSEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEES
T ss_pred             CCcccccchhhhhhhhcccccccccccccceeEEccCCCcCCHHHHhhhhccCCcee-eeeeecccccCccceeEEEEEC
Confidence            4456677777776644332          1357789999999999999999998774 6999999788999999999999


Q ss_pred             CHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          76 DKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        76 s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|++||+++++.|+||.|.|..+..
T Consensus       148 ~~e~A~~Al~~~~~~~~G~~i~V~~A~~  175 (183)
T d1u1qa_         148 DHDSVDKIVIQKYHTVNGHNCEVRKALS  175 (183)
T ss_dssp             CHHHHHHHHTSSCEEETTEEEEEEECCC
T ss_pred             CHHHHHHHHHhCCCeECCEEEEEEecCC
Confidence            9999999999999999999999998854

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.8e-17  Score=110.14  Aligned_cols=76  Identities=8%  Similarity=0.059  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.+|.+. .+++..+ .+|+++|+|||+|.++++|++|++ +|+..|.+|++.|.++.+
T Consensus        20 ~lfV~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~P   96 (101)
T d1x5oa1          20 NLYISNLPLSMDEQELENMLKPFGQVI-STRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP   96 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhccccc-ceeeecc-cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCCC
Confidence            478899999999999999999998773 6888888 799999999999999999999997 699999999988766543

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.8e-16  Score=107.21  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=65.2

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|+++|.++|+.||.|. +|++..+   ++++|+|||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus        10 l~V~nLp~~~te~~l~~~F~~~G~v~-~i~~~~~---~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          10 LYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS---TTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             EEEECCCCCCCHHHHHHHHhhcCCeE-eeccccc---CCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            57799999999999999999997773 5887655   7789999999999999999997 799999999999988764

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-16  Score=108.64  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=69.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||.++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.+.++|++||+ +|+..++||.|.|..+...+
T Consensus        21 l~V~nLp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k~   99 (102)
T d2cpxa1          21 LYLKNLSPRVTERDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK   99 (102)
T ss_dssp             EEEECCCTTCCHHHHHHHTHHHHHSS-SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHhhcccee-eEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCcc
Confidence            67899999999999999999997663 57777776789999999999999999999997 59999999999999887644

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-16  Score=103.02  Aligned_cols=74  Identities=12%  Similarity=0.070  Sum_probs=65.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.+|.+. .|.|+.|+.+  .+|+|||+|.+.++|++|++ .|+..++||.|.|..+..
T Consensus        11 l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~   85 (90)
T d2cqia1          11 LYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   85 (90)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCce-eeeeecccCc--cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            57789999999999999999997773 6999998433  37999999999999999998 699999999999998865

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=7.6e-16  Score=103.63  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             HHHhcCCCCCCHHHH---HhhcccCCcccccEEEeecCCCCC---cceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067          27 KLQHTGIVEGKKDDI---AQFFDGLEIISNGITLVEDPFNGR---PTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT   99 (141)
Q Consensus        27 ~~~~gLp~s~te~DI---~~FFs~~~iv~~~I~i~~d~~~Gr---~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~   99 (141)
                      ++++|||+++|++||   .++|+.+|.+. .|.|+.|+.+++   +.|+|||+|.++++|++|++ +|+..++||.|.|.
T Consensus        11 vyV~nLp~~~t~~~l~~~~e~F~~~G~I~-~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          11 VFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             EEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEECCCCccCHHHHHHHHHHhcccCCce-EEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            577899999999999   77899998774 699998865553   45999999999999999997 79999999999874

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.56  E-value=9.8e-16  Score=104.03  Aligned_cols=74  Identities=23%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      .++++|||+++|++||+++|+.++.+.    ++.  .+|+++|+|||+|.+.++|++|++ +|+..|+||.|.|..+...
T Consensus        18 ~l~V~nL~~~~te~~l~~~F~~~g~v~----~~~--~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k   91 (96)
T d1fjca_          18 TLLAKNLSFNITEDELKEVFEDALEIR----LVS--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSEEEEC----CEE--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcccce----eee--ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            467899999999999999999997552    222  479999999999999999999997 6999999999999988764


Q ss_pred             h
Q psy3067         105 V  105 (141)
Q Consensus       105 ~  105 (141)
                      .
T Consensus        92 ~   92 (96)
T d1fjca_          92 G   92 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=111.80  Aligned_cols=103  Identities=13%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             HHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          23 EMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        23 d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      ++-.|+++|||+++|++||+++|+.++.+. +|.++.|+.+|+++|+|||+|.+.++|++|+..+...++.+.+.+....
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~   83 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV   83 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCEE-EEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhh
Confidence            444578899999999999999999998773 6999999889999999999999999999999999999999999998876


Q ss_pred             hhhcccCC------C--CCCCCcccCCCCCCC
Q psy3067         103 YTVQHRAP------R--CETSIPVSSSTHKPG  126 (141)
Q Consensus       103 ~~~~~~~~------~--~~~~lp~~~~~~~~~  126 (141)
                      ..+.....      +  ++.+||++.+++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~i~V~~lp~~~te~~L~  115 (183)
T d1u1qa_          84 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR  115 (183)
T ss_dssp             CTTGGGSTTTTCCCSEEEEECCCTTCCHHHHH
T ss_pred             hcccccccccccccceeEEccCCCcCCHHHHh
Confidence            54332211      1  256999888776654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-15  Score=101.65  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++||||++|++||+++|+.|+.+. +|++.     .+++|+|||+|.++++|++||. +++.|+||.|.|..+..
T Consensus         8 lfV~nLp~~~te~~L~~~F~~~G~v~-~v~~~-----~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~~   77 (88)
T d1wf0a_           8 VFVGRCTGDMTEDELREFFSQYGDVM-DVFIP-----KPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAEP   77 (88)
T ss_dssp             EEEESCCSSSCHHHHHHHSTTTSCCC-EEECC-----SSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHcCCce-EEEEe-----eccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCCC
Confidence            57799999999999999999997653 46543     4567899999999999999996 77889999999998865

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.1e-16  Score=101.50  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC-cCCCeeEEEEecc
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE-RIGHRYIFFTGHR  102 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~-~i~~RyIeV~~ss  102 (141)
                      +.++++|||+++|++||+++|+.++.+. ++.+.      +++|+|||+|.++++|++|++ +|+. .++||.|.|..+.
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~   74 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPL-AGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   74 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCC-SSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEE-EeEEe------cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence            3467899999999999999999998763 34443      456899999999999999997 6876 4999999999887


Q ss_pred             hhh
Q psy3067         103 YTV  105 (141)
Q Consensus       103 ~~~  105 (141)
                      +..
T Consensus        75 ~k~   77 (80)
T d2cqha1          75 SKK   77 (80)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            643

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.3e-15  Score=99.20  Aligned_cols=73  Identities=14%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV  105 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~  105 (141)
                      ++++|||+++|++||+++|+.++.+. .+.+      ++++|+|||+|.++++|++|++ +|+..|+||.|.|..+.+.+
T Consensus        11 l~V~nLp~~~te~~l~~~F~~~g~i~-~~~~------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~~   83 (86)
T d2cpda1          11 LYVRNLMLSTSEEMIEKEFNNIKPGA-VERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD   83 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSTTC-EEEE------EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred             EEEcCCCCCCCHHHHHHhhcccceee-eEEE------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCCC
Confidence            56799999999999999999998764 2333      4567899999999999999998 69999999999999887644


Q ss_pred             c
Q psy3067         106 Q  106 (141)
Q Consensus       106 ~  106 (141)
                      +
T Consensus        84 ~   84 (86)
T d2cpda1          84 K   84 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-15  Score=98.80  Aligned_cols=73  Identities=19%  Similarity=0.084  Sum_probs=63.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.+..   ++.++|+|||+|.++++|++||+ +|+..+++|.|.|..+..
T Consensus        17 l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          17 IYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEECCCCCCCHHHHHHHHhcCCceE-EEEecc---cccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            67899999999999999999998763 455543   46778999999999999999998 699999999999987654

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.7e-17  Score=108.16  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEE-----eecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITL-----VEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG  100 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i-----~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~  100 (141)
                      ++++|||+++||+||++||+.++.+. ++.+     +.+..+++++|+|||+|.++++|++|+++|+..+.||.|.|..
T Consensus         4 lyVgNLp~~~te~~l~~~F~~~g~~~-~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r   81 (90)
T d1u2fa_           4 LYVGNIPFGITEEAMMDFFNAQMRLG-GLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   81 (90)
T ss_dssp             EEECSCCTTCCTTHHHHHHHHHHTTT-TSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBC
T ss_pred             EEEcCCCCccchHHHHHHHHhhCcEE-EEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECC
Confidence            46789999999999999999875432 2222     3444788999999999999999999999999999999999864

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.5e-14  Score=94.48  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT  104 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~  104 (141)
                      +++|||+++|++||+++|+.+++..  ++      .++++|+|||.|.+.++|++|++ +|+..++||.|.|..+..+
T Consensus         2 ~V~nLp~~~t~~~l~~~F~~~g~~~--~~------~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1           2 LIRGLPGDVTNQEVHDLLSDYELKY--CF------VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             EEECCCTTCCHHHHHHHTTTSCEEE--EE------EETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             EEeCCCCcCCHHHHHHHHhcccccc--ee------ecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            5789999999999999999999642  33      35678999999999999999997 7999999999999988653

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-15  Score=101.14  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|||+++|++||+++|+.|+.|. .+.+..|       |+|||+|.++++|++||+ +|+..+++|.|.|..+..
T Consensus         3 vfV~nlp~~~~~~~l~~~F~~~G~v~-~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~   72 (87)
T d3begb1           3 VVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV   72 (87)
T ss_dssp             EEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred             EEEECCCCcCCHHHHHHHHhhhcccc-ccccccc-------ceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEec
Confidence            57789999999999999999997663 5776554       899999999999999997 699999999998877654

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.8e-14  Score=98.94  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=60.7

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|||+++|++||+++|+.||-|. .|.|.      +.+|+|||+|.+.++|++|++ +|+..+.+|.|.|..+..
T Consensus        13 l~V~nLp~~~t~~~L~~~F~~fG~I~-~v~l~------~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          13 ILAKNLPAGTLAAEIQETFSRFGSLG-RVLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             EEEECCCCCCCHHHHHhhhhccCCcc-EEEee------ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            57899999999999999999997663 46652      346899999999999999997 699999999999987754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-14  Score=97.60  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             HHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+ .+|++||+++|+.+|.|. .|.|+.| .    +|+|||+|.++++|++|++ +|+..|.||.|.|..+..
T Consensus         5 l~V~nL~p~~~te~~L~~~F~~fG~I~-~v~i~~~-~----kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~   77 (109)
T d2adca1           5 LLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN-K----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH   77 (109)
T ss_dssp             EEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCT-T----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             EEEeCCCcccCCHHHHHHHHhhccccc-eEEEEec-c----cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            45689955 599999999999998774 6999887 3    5899999999999999998 699999999999998864

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-14  Score=98.38  Aligned_cols=76  Identities=12%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCc-ccccEEEeecC-CCCCcceeeEEEeCCHHHHHHHHHH-cC--CcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEI-ISNGITLVEDP-FNGRPTGEAYVQFVDKETAELALQK-HK--ERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~i-v~~~I~i~~d~-~~Gr~~G~afV~F~s~e~a~~AL~k-~~--~~i~~RyIeV~~s  101 (141)
                      ++++|||+++|++||+++|+.++. + .+|+|+.|+ .+|+++|+|||+|.+.++|.+|++. +.  -.+++|.|.|..+
T Consensus         4 LyV~nLp~~~te~~l~~~f~~~g~~i-~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1           4 LFIGGIPKMKKREEILEEIAKVTEGV-LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHSTTE-EEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEEcCCCCcCCHHHHHHHHHHhCCcc-eEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            467899999999999999999973 5 369998873 3589999999999999999999984 43  4568999999988


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      .+
T Consensus        83 ~p   84 (96)
T d2disa1          83 EP   84 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=96.00  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++++|||+++|++||+++|+.+++..  +.      .++.+|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus         7 ~i~V~nLp~~~t~~~l~~lF~~~G~~~--~~------~~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~   77 (88)
T d1wg1a_           7 GILVKNLPQDSNCQEVHDLLKDYDLKY--CY------VDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             CEEEESCCSSCCHHHHHHHTCSSCCCC--EE------EEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCccChHHHHHHHHhcCcee--ee------eeccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            367899999999999999999999542  33      35678999999999999999997 699999999999998754

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.5e-14  Score=93.50  Aligned_cols=72  Identities=13%  Similarity=-0.020  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++-+. .+.+..    ++.+|+|||+|.+.++|.+|+. +|+..| +||.|.|..++.
T Consensus        13 L~V~NLp~~~te~~l~~~F~~~G~v~-~~~~~~----~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          13 LHLSNIPPSVSEEDLKVLFSSNGGVV-KGFKFF----QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCCE-EEEEEC----SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EEEECCCCCCCHHHHHHHhhccCCEE-EEEEee----ecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            56789999999999999999997542 244433    4457899999999999999997 688877 589999987754

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.2e-14  Score=94.35  Aligned_cols=70  Identities=9%  Similarity=0.096  Sum_probs=62.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||++++++||+++|+.+|.+. +|.+..+      +|+|||+|.+.++|++|++ +|+..|+||.|.|..++.
T Consensus        11 l~V~nLp~~~~~~~l~~~F~~~G~i~-~i~~~~~------k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~   81 (86)
T d2cpja1          11 LFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH   81 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHTSTTCCCS-EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCce-Eeeeecc------cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            67889999999999999999998774 6888765      4799999999999999998 599999999999998765

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8e-14  Score=96.20  Aligned_cols=72  Identities=14%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC--CCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI--GHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i--~~RyIeV~~ss~  103 (141)
                      |+++||||++|++||++.|+.+|.+. .|.|+.+    +.+|+|||+|.++++|++|++ +|+..|  +++.|.|..+..
T Consensus        10 v~V~NL~~~vte~~L~~~F~~~G~i~-~~~i~~~----~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~   84 (108)
T d2adba1          10 IIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL   84 (108)
T ss_dssp             EESCSCCSTTHHHHHHHHHTTTSCEE-EEEEEEE----TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSS
T ss_pred             EEEeCcCCCCCHHHHHHHHccCCcEE-EEEEEee----CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCC
Confidence            56799999999999999999998773 5888776    247999999999999999998 688877  578899987765

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-14  Score=95.48  Aligned_cols=73  Identities=18%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             HHHhcCCCCCCHHHHHh----hcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          27 KLQHTGIVEGKKDDIAQ----FFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~----FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ++++|||+++|++||++    +|+.+|.+. .|++.   .+|+++|+|||+|.+.++|++|++ .|+..++||.|.|..+
T Consensus         6 l~V~nLp~~~t~~dl~~~l~~~f~~~G~i~-~i~~~---~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~a   81 (91)
T d1nu4a_           6 IYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   81 (91)
T ss_dssp             EEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhccccccc-ceEEe---eeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            56789999999999964    688886552 36553   458899999999999999999997 6999999999999988


Q ss_pred             ch
Q psy3067         102 RY  103 (141)
Q Consensus       102 s~  103 (141)
                      ..
T Consensus        82 k~   83 (91)
T d1nu4a_          82 KT   83 (91)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=91.50  Aligned_cols=73  Identities=8%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|||+++|++||+++|+.++.+. .|.+..+      +|+|||+|.+.++|++|++.   +...++||.|.|..|+.
T Consensus        11 l~V~nLp~~~t~~~L~~~f~~~G~i~-~v~~~~~------~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~   83 (88)
T d2cq1a1          11 LHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH   83 (88)
T ss_dssp             EEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred             EEEeCCCCCCCHHHHHHHHhcccccc-ccccccc------ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCC
Confidence            45689999999999999999997774 5777654      37999999999999999973   67789999999998876


Q ss_pred             hhc
Q psy3067         104 TVQ  106 (141)
Q Consensus       104 ~~~  106 (141)
                      ++.
T Consensus        84 ~~l   86 (88)
T d2cq1a1          84 KEL   86 (88)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5e-14  Score=96.28  Aligned_cols=70  Identities=16%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++||||+++++||+++|+.++.+. .+.|..       .|+|||+|.++++|++||+ +|+..+.+|.|.|..+..
T Consensus        17 ~i~V~Nlp~~~~~~~L~~~F~~~G~v~-~~~i~~-------~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~   87 (98)
T d1wg4a_          17 RVLVSGLPPSGSWQDLKDHMREAGDVC-YADVQK-------DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV   87 (98)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTSSCEE-EEEEET-------TTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhcccc-cccccc-------cceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEec
Confidence            367899999999999999999997663 466643       3899999999999999997 699999999999887765

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-13  Score=93.79  Aligned_cols=69  Identities=20%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             HHHHhcCC-CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          26 WKLQHTGI-VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        26 ~~~~~gLp-~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .|+++||| +.++++||+++|+.++.+. .|.|        ++|+|||+|.+.++|++|++ +|+..+.||.|.|..+..
T Consensus        17 ~lfV~nL~~~~~~~~~L~~~F~~~G~i~-~~~i--------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          17 RVFIGNLNTLVVKKSDVEAIFSKYGKIV-GCSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             CEEEEEECTTTCCHHHHHHSSTTSSCEE-EEEE--------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             EEEEeCCCcccCCHHHHHHHHhhcCCEE-EEEE--------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            36788995 7899999999999997663 4766        35899999999999999998 699999999999998865

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-13  Score=93.15  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=61.3

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||.++|++||+++|+.+|.+. +|+|+.|      +|+|||+|.+.++|++|+. +|+..|+||.|.|.-+.
T Consensus        21 l~v~nL~~~~te~~L~~~F~~fG~i~-~v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak   90 (96)
T d1x4ga1          21 VYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK   90 (96)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCce-EEEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            56789999999999999999997773 6888876      5899999999999999997 69999999999997654

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.36  E-value=4.5e-13  Score=88.33  Aligned_cols=70  Identities=14%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEecc
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~ss  102 (141)
                      ++++|||+++|+++|.++|+.++.+. .|+++.+     .+|+|||+|.+.++|++|++ +|+..+ +++.|.|.-+.
T Consensus        11 l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          11 LFLTNLPEETNEMMLSMLFNQFPGFK-EVRLVPN-----RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             EEEESCCTTCCHHHHHHHHTTSTTEE-EEEECTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             EEEECCCCCCCHHHHHhhhccCccEE-Eeeeecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            56789999999999999999997663 5888765     25799999999999999998 588777 57889887654

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=8.6e-13  Score=90.43  Aligned_cols=74  Identities=12%  Similarity=0.067  Sum_probs=61.1

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss~  103 (141)
                      |+++|||+++||+||.++|+.++.+. .|.+..      .+|+|||+|.+.++|++|+..   +.-.+++|.|.|..++.
T Consensus        18 l~v~nlp~~~te~~l~~~F~~fG~I~-~~~~~~------~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~   90 (104)
T d1wexa_          18 VHVRGLCESVVEADLVEALEKFGTIC-YVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             EEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             EEEeCCCCCCCHHHHHHhhhhcccce-EEEEEe------cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCC
Confidence            56789999999999999999998773 466643      357999999999999999973   45578999999998876


Q ss_pred             hhcc
Q psy3067         104 TVQH  107 (141)
Q Consensus       104 ~~~~  107 (141)
                      .+..
T Consensus        91 ~~~~   94 (104)
T d1wexa_          91 KRIT   94 (104)
T ss_dssp             SSCC
T ss_pred             CccC
Confidence            4443

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-13  Score=93.78  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=66.6

Q ss_pred             HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067          25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH  101 (141)
Q Consensus        25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s  101 (141)
                      ..+..++++.+.+|++++++|+.+|-+. .|+|+.+ .+|+++|+|||+|.+.++|.+|++ +|+..++||.|.|..+
T Consensus        28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~-~v~I~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          28 SDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             chHHhhhhhhhhhHHHHHHHhccCCCEE-EEEeecC-CCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            3456678888899999999999997773 6999988 899999999999999999999998 6999999999988653

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.2e-13  Score=90.69  Aligned_cols=71  Identities=15%  Similarity=0.033  Sum_probs=56.8

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCee-EEEEecchh
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRY-IFFTGHRYT  104 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~Ry-IeV~~ss~~  104 (141)
                      ||++.|+|++++++ |++.|+.|+.+- ++++      ++.+|+|||+|.++++|++||++|+..++||. |.|.+|..+
T Consensus         6 wV~V~G~p~~~~~~-il~~F~~~G~I~-~~~~------~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~k   77 (81)
T d1wwha1           6 WVTVFGFPQASASY-ILLQFAQYGNIL-KHVM------SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK   77 (81)
T ss_dssp             EEEEECCCGGGHHH-HHHHHHTTSCEE-EEEE------CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred             EEEEECCChHHHHH-HHHHHHhhhhhh-eEEe------cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCCh
Confidence            34555999999865 556799997652 3554      45569999999999999999999999999996 589999754

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=9.3e-13  Score=89.87  Aligned_cols=70  Identities=10%  Similarity=0.037  Sum_probs=60.7

Q ss_pred             HHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH---HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ---KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~---k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||++ +|++||.++|+.+|.|. +|.++.+      +|+|||+|.+.++|.+|++   .++..++||.|.|..|.
T Consensus        21 l~v~nLp~~~~te~~l~~~F~~fG~V~-~v~~~~~------k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~   93 (99)
T d1x4fa1          21 IHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE   93 (99)
T ss_dssp             EEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             EEEeCCcCCccCHHHHHhhhcccccee-EEEEeec------CCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcC
Confidence            678999996 89999999999998773 6888755      4799999999999999996   57778999999999885


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        94 ~   94 (99)
T d1x4fa1          94 K   94 (99)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-12  Score=84.97  Aligned_cols=68  Identities=12%  Similarity=0.038  Sum_probs=58.0

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      ++++|+|  +|++||+++|+.+|-+. +|.+..+      +|+|||+|.+.++|++|++ +|+..++||.|.|..+++
T Consensus         8 i~V~~~~--~te~~L~~~F~~~G~I~-~v~~~~~------~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   76 (79)
T d2bz2a1           8 LYVYGED--MTPTLLRGAFSPFGNII-DLSMDPP------RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK   76 (79)
T ss_dssp             EEEECSS--CCHHHHHHHHSTTCCCS-CEEEETT------TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred             EEEECCC--CCHHHHHHHHhccCccc-eeeeccC------CCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            4567876  89999999999997663 5887643      5799999999999999997 699999999999998865

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=4.8e-12  Score=85.59  Aligned_cols=71  Identities=18%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEecc
Q psy3067          26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH--RYIFFTGHR  102 (141)
Q Consensus        26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~ss  102 (141)
                      .++++|||+++|++||+++|+.++.+. .|.+..+      +|+|||+|.+.++|++|++ +|+..|++  |.|.|.-+.
T Consensus        19 tl~V~nLp~~~t~~~l~~~f~~~G~i~-~~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          19 RLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhhcccc-eEeeecc------ccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCC
Confidence            367889999999999999999997663 5776544      4799999999999999997 59988876  578887765


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        92 ~   92 (97)
T d1whya_          92 S   92 (97)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.4e-11  Score=83.11  Aligned_cols=66  Identities=17%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCH-HHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDK-ETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~-e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      |++|||+++|++||++.|+.|+.|. .|.|+.+      +|+|||.|.++ ++|.+|+. .|...+..+.+.|..
T Consensus        15 fvgnL~~~~tee~Lk~~F~~fG~V~-~v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~   82 (113)
T d1owxa_          15 FSGDLDDQTCREDLHILFSNHGEIK-WIDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW   82 (113)
T ss_dssp             EEESCCSSCCHHHHHHHTCSSCCEE-EEECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred             EECCCCCCCCHHHHHHHHHhcCChh-eEEEecC------CceEEEEecCcHHHHHHHHHHhcCCceecCceEEEE
Confidence            5689999999999999999998874 6888754      58999999995 67888887 577776666555444

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.1e-11  Score=79.22  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             HHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH---HcCCcCCCeeEEEEecc
Q psy3067          27 KLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ---KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        27 ~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~---k~~~~i~~RyIeV~~ss  102 (141)
                      ++++|||.. +|++||.++|+.||.+. .|.++.+      +++|||+|++.++|..|++   .+...++||.|.|.-|.
T Consensus        11 v~v~nl~~~~~t~~eL~~lF~~fG~I~-~i~i~~~------k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~   83 (89)
T d1x4da1          11 VHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   83 (89)
T ss_dssp             EEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             EEEECCCCCcCCHHHHHHHHHhhCCeE-EEEeecc------ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECC
Confidence            456899986 78999999999998774 5887665      2589999999999999997   25668999999999886


Q ss_pred             h
Q psy3067         103 Y  103 (141)
Q Consensus       103 ~  103 (141)
                      .
T Consensus        84 ~   84 (89)
T d1x4da1          84 K   84 (89)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.2e-10  Score=80.06  Aligned_cols=70  Identities=9%  Similarity=0.017  Sum_probs=57.9

Q ss_pred             HHHhcCCCCC-C----HHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067          27 KLQHTGIVEG-K----KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG  100 (141)
Q Consensus        27 ~~~~gLp~s~-t----e~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~  100 (141)
                      ++++||+.++ +    +++|.++|+.++.+. +++++.      .+|+|||+|.+.++|.+|++ +|+..++||.|.|..
T Consensus         8 L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~-~~~~~k------~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~   80 (104)
T d1weya_           8 LIACVANDDVFSESETRAKFESLFRTYDKDT-TFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF   80 (104)
T ss_dssp             EEEECCCGGGGSTTTHHHHHHHHHHTTCSSC-EEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred             EEEEeCCchhcCcHHHHHHHHHHhcccccce-EEEEec------CCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEee
Confidence            5677888775 2    356999999998773 577653      45799999999999999999 699999999999998


Q ss_pred             cch
Q psy3067         101 HRY  103 (141)
Q Consensus       101 ss~  103 (141)
                      +..
T Consensus        81 a~~   83 (104)
T d1weya_          81 AQT   83 (104)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            865

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-10  Score=78.58  Aligned_cols=65  Identities=5%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-C--CeeEEEE
Q psy3067          28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-G--HRYIFFT   99 (141)
Q Consensus        28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~--~RyIeV~   99 (141)
                      .++|||+++|+++|++.|+.+|.+. .|.++.+      +|+|||+|.+.++|.+|++ +|+..| .  ++.|.++
T Consensus        24 ~ng~L~~~vte~~L~~~F~~~G~i~-~i~~~~~------k~~aFV~f~~~e~A~~A~~~lng~~i~~~~~~~i~~~   92 (101)
T d2cq2a1          24 ANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY   92 (101)
T ss_dssp             ETCTGGGTCCHHHHHHHHHHHSCEE-EEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred             ECCCCCCCCCHHHHHHHHHhhCccc-EEeeccC------ccEEEEEECCHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence            3378999999999999999998774 5766554      4699999999999999997 687765 3  3455554

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.2e-09  Score=72.39  Aligned_cols=71  Identities=13%  Similarity=0.120  Sum_probs=58.9

Q ss_pred             CCCHHHHHhhcccCCcccccEEEeecCCC--CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhc
Q psy3067          35 EGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQ  106 (141)
Q Consensus        35 s~te~DI~~FFs~~~iv~~~I~i~~d~~~--Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~  106 (141)
                      ....+||++-|+.+|.+. +|.|+.++.+  ....|.+||+|.++++|.+|++ +|+..++||.|.+..++.+..
T Consensus        25 ~~i~edi~~e~~k~G~v~-~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~~~y   98 (104)
T d1o0pa_          25 EEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY   98 (104)
T ss_dssp             HHHHHHHHHHHTTTSCEE-EEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEECHHHH
T ss_pred             HHHHHHHHHHhcccCceE-EEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcCHHHh
Confidence            345689999999998774 6888877333  2456999999999999999998 799999999999999886543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.9e-09  Score=71.55  Aligned_cols=62  Identities=24%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067          37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY  103 (141)
Q Consensus        37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~  103 (141)
                      .++||++-|+.++.+. .|.+..+    +++|+|||+|+++++|++|+. +|+..++||.|.|.....
T Consensus        32 i~edv~~~~~~~G~V~-~v~~~~~----~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g   94 (99)
T d2dita1          32 IREDLRVECSKFGQIR-KLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG   94 (99)
T ss_dssp             HHHHHHHHGGGTSCCS-EEEEETT----CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred             HHHHHHHHhcCcccEE-EEeccCC----CCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCC
Confidence            3689999999998773 5766543    567999999999999999997 699999999999998754

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.03  Score=35.43  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CCCCHHHHHhh----cccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067          34 VEGKKDDIAQF----FDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR  102 (141)
Q Consensus        34 ~s~te~DI~~F----Fs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss  102 (141)
                      +...++||+++    |+.+..|- .+.|..- .+|...  |-|...+..+|+.|+. .|+..||++.|-|..++
T Consensus         2 ~~L~~kelqq~L~~~f~~h~~V~-sv~l~~~-~dg~~~--A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1           2 YRLSRKELQQLLQEAFARHGKVK-SVELSPH-TDYQLK--AVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCEE-EEEECSC-CSTTCC--EEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CcCCHHHHHHHHHHHHHhheeEE-EEEEEec-cCCcEE--EEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            34556666554    55665552 3666444 566665  9999999999999998 69999999999998765

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.035  Score=36.75  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067          39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR  102 (141)
Q Consensus        39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss  102 (141)
                      .+|.+-|+.++-| --|+++.|        ..+|.|.+-+.|-+||++++..+.+|.|.|...+
T Consensus        39 ~~Llq~l~~~GeV-iLvRFv~d--------~mwVTF~dG~SAL~al~l~g~~v~G~~l~It~~~   93 (95)
T d1ufwa_          39 TELMQTLGSYGTI-VLVRINQG--------QMLVTFADSHSALSVLDVDGMKVKGRAVKISGPS   93 (95)
T ss_dssp             HHHHHHHHHHSCC-SEEEEETT--------EEEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred             HHHHHHHhhCCeE-EEEEEeCC--------eEEEEECCcHHHHHHhccCCeEEcceEEEEecCC
Confidence            4577777888533 13777776        7999999999999999999999999999987544

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.1  Score=34.71  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067          31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK   86 (141)
Q Consensus        31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k   86 (141)
                      ..|-....-||.+.|+++|-|.  |..+-|  +     -|||...+.|+|+.+++.
T Consensus        22 tFP~~Wk~~dI~~lFSpfG~V~--VswIdd--T-----Sa~V~L~~~e~~~~v~~~   68 (100)
T d1whva_          22 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD--T-----SAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             ECCTTCCHHHHHHHHTTTCSCC--CEEEET--T-----EEEEECSCHHHHHHHHHH
T ss_pred             eCCcccchhHHHHHhcCCCceE--EEEecC--c-----eEEEEecCHHHHHHHHHH
Confidence            4577889999999999998775  777765  3     699999999999998874

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=0.73  Score=29.70  Aligned_cols=64  Identities=9%  Similarity=0.061  Sum_probs=44.8

Q ss_pred             HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHHH-cCCcC
Q psy3067          27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG--RPTGEAYVQFVDKETAELALQK-HKERI   91 (141)
Q Consensus        27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~k-~~~~i   91 (141)
                      +++|.||-+.||++..+-+++++-. +....+..+.+-  ..---|||.|.+++++..-.++ ++...
T Consensus         4 vVvRrLPP~Lte~~F~~~l~~~~~~-d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F   70 (91)
T d1uw4a_           4 VVIRRLPPTLTKEQLQEHLQPMPEH-DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             EEEEEECTTCCHHHHHHHHCSCCCE-EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             EEEecCCCCCCHHHHHHHhCCcCce-EEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence            5678999999999999999987644 344444332221  1124699999999998887774 65543