Psyllid ID: psy3081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MNKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHEEEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNKHLFSLFGafiggnsemVLDEFSSYRKMALVVILTRagldldppaLRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGsifaavspavvVPCLFKLrskgygvakgiPTLVIAVSGMGDATSVAIFGIVHsfmfsedsllynivlgpssLIIGLAFGIIWGSLakvvpekgdpfvVPLRIIMLLGGGLIVIFAsehlglggagplGVIASAFVSSYswskqgwniednpvaTAFEIFWMIFEpilfgltgtqfklseldpqIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Flexible Loop (DISEMBL)
MNKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRagldldppaLRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Low Complexity Region (SEG)
MNKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRiimllgggliVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQivsiaaiiviggvvtrilitvLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Disordered region (IsUnstruct)
****LFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYL**
Disordered Region (DISOPRED)
*NKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSK****AKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Disordered Region (DISEMBL)
MNKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Disordered Region (DISPRO)
***HLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLYLGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q86UD5	537	Mitochondrial sodium/hydr	yes	N/A	0.889	0.541	0.375	6e-51
Q5R6B8	537	Mitochondrial sodium/hydr	yes	N/A	0.889	0.541	0.375	2e-50
Q8C0X2	565	Sodium/hydrogen exchanger	yes	N/A	0.899	0.520	0.351	5e-48
Q4ZJI4	515	Sodium/hydrogen exchanger	no	N/A	0.889	0.565	0.354	6e-47
Q5BKR2	547	Mitochondrial sodium/hydr	no	N/A	0.889	0.531	0.358	1e-46
A4IHB9	539	Mitochondrial sodium/hydr	yes	N/A	0.889	0.539	0.351	5e-45
Q4R7S2	511	Sodium/hydrogen exchanger	N/A	N/A	0.889	0.569	0.341	4e-44
A6NJY1	282	Putative SLC9B1-like prot	no	N/A	0.639	0.741	0.308	2e-21
Q60362	426	Na(+)/H(+) antiporter 1 O	yes	N/A	0.877	0.673	0.224	9e-05

>sp|Q86UD5|SL9B2_HUMAN Mitochondrial sodium/hydrogen exchanger 9B2 OS=Homo sapiens GN=SLC9B2 PE=1 SV=2

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 167/296 (56%), Gaps = 5/296 (1%)

Query: 25  SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
           SS R +AL +IL RAGL LD  AL++L    ++L + P  VEA +  +  HY L LPW W
Sbjct: 174 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 233

Query: 85  AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
            F+ G +  AVSPAVVVP +  L+  GYGV KG+PTL++A     D  ++  F       
Sbjct: 234 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 293

Query: 145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFA 204
           FS  S ++N++ G   ++IG+A G + G   +  P +    +V  R  ++LG  ++ +F+
Sbjct: 294 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFS 353

Query: 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
           S H G  G+G L  +  AF++       GW  E   V     + W IF+P+LFGL G + 
Sbjct: 354 SVHFGFPGSGGLCTLVMAFLAGM-----GWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEV 408

Query: 265 KLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
            ++ L P+ V +    V   V+ RIL T L+   +  NLKEK+F++F+W+ KA+VQ
Sbjct: 409 SIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQ 464

Electroneutral exchange of protons for Na(+) and Li(+) across the inner mitochondrial membrane. Contributes to the organellar volume homeostasis. Required for osteoclast differentiation and bone resorption activity.
Homo sapiens (taxid: 9606)

>sp|Q5R6B8|SL9B2_PONAB Mitochondrial sodium/hydrogen exchanger 9B2 OS=Pongo abelii GN=SLC9B2 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 166/296 (56%), Gaps = 5/296 (1%)

Query: 25  SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
           SS R +AL +IL RAGL LD  AL++L    ++L + P  VEA +  +  HY L LPW W
Sbjct: 174 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 233

Query: 85  AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
            F+ G +  AVSPAVVVP +  L+  GYGV KG+PTL++A     D  ++  F       
Sbjct: 234 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 293

Query: 145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFA 204
           FS  S ++N++ G   ++IG+A G + G   +  P      +V  R  ++LG  ++ +F+
Sbjct: 294 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSCDQDKLVCKRTFLVLGLSVLAVFS 353

Query: 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
           S H G  G+G L  +  AF++       GW  E   V     + W IF+P+LFGL G + 
Sbjct: 354 SVHFGFPGSGGLCTLVMAFLAGM-----GWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEV 408

Query: 265 KLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
            ++ L P+ V +    V   V+ RIL T L+   +  NLKEK+F++F+W+ KA+VQ
Sbjct: 409 SIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQ 464

Electroneutral exchange of protons for Na(+) across the inner mitochondrial membrane. Contributes to the organellar volume homeostasis. Required for osteoclast differentiation and bone resorption activity.

Pongo abelii (taxid: 9601)

>sp|Q8C0X2|SL9B1_MOUSE Sodium/hydrogen exchanger 9B1 OS=Mus musculus GN=Slc9b1 PE=2 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 5/299 (1%)

Query: 25  SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
           S+ R  AL +IL RAGL LDP AL+ L    L+L   P  +EA S  + +H+ +N PW W
Sbjct: 205 SALRNTALTIILVRAGLGLDPQALKHLKGVCLRLSFGPCFLEACSAALFSHFIMNFPWQW 264

Query: 85  AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
            FL G +  AVSPAVVVP +  L+  GYGV KGIPTL++A S M D  ++  F    S +
Sbjct: 265 GFLLGFVLGAVSPAVVVPNMLMLQENGYGVEKGIPTLLVAASSMDDIVAITGFNTFLSIV 324

Query: 145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFA 204
           FS  S++ NI+     ++IG+  GI+ G   +  P      +   R  ++L   +  +  
Sbjct: 325 FSSGSVISNILSSLRDVLIGVLVGIVMGVFVQYFPSGDQERLTQRRAFLVLSMCISAVLG 384

Query: 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
            +H+GL G+G L  +  +F+++  W+++   I+     T     W +F+P+LFGL GT+ 
Sbjct: 385 CQHIGLHGSGGLVTLVLSFMAAKRWAEEKVGIQKIVANT-----WNVFQPLLFGLVGTEV 439

Query: 265 KLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
            +  L+ + + +    +   +  RIL T ++   ++   KEK+F+A SW+ KA+VQ  L
Sbjct: 440 SVESLESKTIGMCLATLGLALSVRILSTFVLMSFANFRFKEKVFIALSWIPKATVQAVL 498

Mus musculus (taxid: 10090)

>sp|Q4ZJI4|SL9B1_HUMAN Sodium/hydrogen exchanger 9B1 OS=Homo sapiens GN=SLC9B1 PE=2 SV=2

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 162/296 (54%), Gaps = 5/296 (1%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           R +AL +IL RAGL LDP ALR L     +L + P  +EA +  + +H+ +  PW WAFL
Sbjct: 157 RSIALTIILIRAGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFPWQWAFL 216

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            G +  AVSPAVVVP +  L+  GYGV +GIPTL++A S M D  ++  F    S +FS 
Sbjct: 217 LGFVLGAVSPAVVVPYMMVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIVFSS 276

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             +L N +    ++ I L  GI+ G   +  P +    +   R  ++L   +  +  S+ 
Sbjct: 277 GGILNNAIASIRNVCISLLAGIVLGFFVRYFPSEDQKKLTLKRGFLVLTMCVSAVLGSQR 336

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           +GL G+G L  +  +F++   WS++   ++           W IF+P+LFGL G +  +S
Sbjct: 337 IGLHGSGGLCTLVLSFIAGTKWSQEKMKVQK-----IITTVWDIFQPLLFGLVGAEVSVS 391

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
            L+  IV I+   +   +  RIL T L+   +  + KEK+F+A +WM KA+VQ  L
Sbjct: 392 SLESNIVGISVATLSLALCVRILTTYLLMCFAGFSFKEKIFIALAWMPKATVQAVL 447

Homo sapiens (taxid: 9606)

>sp|Q5BKR2|SL9B2_MOUSE Mitochondrial sodium/hydrogen exchanger 9B2 OS=Mus musculus GN=Slc9b2 PE=2 SV=2

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 25  SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
           SS R +AL VIL RAGL LD  ALR+L    ++L + P  VEA +  I +H+ + LPW W
Sbjct: 174 SSLRSIALSVILVRAGLGLDSKALRKLKGVCVRLAMGPCIVEACASAILSHFLMGLPWQW 233

Query: 85  AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
            F+ G +  AVSPAVVVP +  L+  GYGV KGIPTL++A     D  ++  F       
Sbjct: 234 GFILGFVVGAVSPAVVVPSMLLLQEGGYGVGKGIPTLLMAAGSFDDILAITGFNTCLGVA 293

Query: 145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFA 204
           FS  S ++NI  G   ++IG+A G   G   +  P +    +V  R  ++LG  ++ +F+
Sbjct: 294 FSTGSTVFNIFRGILEVVIGVAAGSFLGFFIQYFPSRDQDNLVWKRAFLVLGFAVLAVFS 353

Query: 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
           S +    G+G L  +  AF++   W+ +   +E         + W +F+P+LFGL G + 
Sbjct: 354 SVYFSFPGSGGLCTLVMAFLAGMRWTDKKSEVEK-----VIAVTWDVFQPLLFGLIGAEV 408

Query: 265 KLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
            +  L  + V +    +   V+ RIL T L+   +  N+KEK+F++F+W+ KA+VQ
Sbjct: 409 SIVSLRAETVGLCVATLSIAVLIRILTTFLMVCFAGFNIKEKIFISFAWLPKATVQ 464

Electroneutral exchange of protons for Na(+) across the inner mitochondrial membrane. Contributes to the organellar volume homeostasis. Required for osteoclast differentiation and bone resorption activity.

Mus musculus (taxid: 10090)

>sp|A4IHB9|SL9B2_XENTR Mitochondrial sodium/hydrogen exchanger 9B2 OS=Xenopus tropicalis GN=slc9b2 PE=2 SV=1

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 25  SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
           ++ R +AL +IL RAGL LDP ALR+L +  L+L   P  VE+ +  + +H+ +  P  W
Sbjct: 182 AALRNIALAIILVRAGLGLDPKALRKLKAVCLRLSFGPCVVESCTAAVVSHFIMGFPLTW 241

Query: 85  AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
            F+ G +  AVSPAVVVP +  L+ +G+GV KGIPTL++A     D  ++  F       
Sbjct: 242 GFMLGFVLGAVSPAVVVPSMLILQKEGFGVDKGIPTLLMAAGSFDDVLAITGFNTCLGMA 301

Query: 145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFA 204
           FS  S L  IV G   +++G+A G+++G      P K    +   R  ++L   +  +F 
Sbjct: 302 FSSGSTLNTIVRGVLEVVVGIAAGLLFGFFLHYFPSKDQENLKGKRSYLILALSVFAVFG 361

Query: 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
           S + G  G+G L  +  AF++   WS     +ED        + W IF+P+LFGL G + 
Sbjct: 362 SLYFGFPGSGGLCTLVMAFLAGIGWSTDKTVVED-----IIAVSWDIFQPLLFGLIGAEI 416

Query: 265 KLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
            ++ L P+ V +    +I  ++ RI I+ L+   S  +LKEK+F++ +WM KA+VQ
Sbjct: 417 SVASLKPETVGLCTATLIIALIIRICISFLMVCFSGFSLKEKIFISLAWMPKATVQ 472

Electroneutral exchange of protons for Na(+) across the inner mitochondrial membrane. Contributes to the organellar volume homeostasis.

Xenopus tropicalis (taxid: 8364)

>sp|Q4R7S2|SL9B1_MACFA Sodium/hydrogen exchanger 9B1 OS=Macaca fascicularis GN=SLC9B1 PE=2 SV=2

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 5/296 (1%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           R  AL VIL RAGL LDP ALR L     +L + P  +EA +  + +H+ +  PW WAFL
Sbjct: 157 RSTALTVILIRAGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFPWEWAFL 216

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            G +  AVSPA+VVP +  L+  GYGV +GIP+L++A S M D  ++  F    S +FS 
Sbjct: 217 LGFVLGAVSPAIVVPSMMVLQENGYGVEEGIPSLLMAASSMDDVLAITGFNTCLSIVFSS 276

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             ++ N +    S+ I L  GI+ G   +  P +    +   R  ++L   +  +  S+ 
Sbjct: 277 GGIVNNAIASIKSVSISLLAGIVLGFFVRYFPSEDQKKLALERGFLILTMCVSAVLGSQR 336

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           +GL G G L  +  +F++   WS++   ++           W IF+P+LFGL G +  +S
Sbjct: 337 IGLHGTGGLFTLVLSFIAGTKWSQEKMKVQK-----IITNVWDIFQPLLFGLVGAEVSVS 391

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
            L+   + I    +   +  RIL+T ++   +  + KEK+F+A +WM KA+VQ  L
Sbjct: 392 LLESNTIGIFVATLSLALCVRILVTYILMCFAGFSFKEKIFIALAWMPKATVQAVL 447

Macaca fascicularis (taxid: 9541)

>sp|A6NJY1|SL9P1_HUMAN Putative SLC9B1-like protein SLC9B1P1 OS=Homo sapiens GN=SLC9B1P1 PE=5 SV=4

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 5/214 (2%)

Query: 107 LRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLA 166
           L+  GYGV + IPTL++A S M D  ++  F    S +F    ++ N +    ++ I L 
Sbjct: 3   LQENGYGVEEDIPTLLMAASSMDDLLAITGFNTCLSIVFYSGGMINNAIASLRNVCISLL 62

Query: 167 FGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSS 226
            GI+ G   +  P +    +   R  ++L   +  +  S+ +GL G+G L  +   F+  
Sbjct: 63  AGIVLGFFVRYFPSEDQKKITLKRGFLVLITFVSAVLGSQPIGLHGSGGLCTLVLHFIE- 121

Query: 227 YSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVV 286
             W+K  W+ E   V       W IF+P+LFGL G +  +S L+  IV I+   +   + 
Sbjct: 122 --WTK--WSQEKMKVQKIITNVWDIFQPLLFGLVGAEVSVSLLESNIVGISVSTLSLALC 177

Query: 287 TRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
            RIL   L+   +  + KEK+F+A +WM KA+VQ
Sbjct: 178 VRILNIYLLMCFAGFSFKEKIFIALAWMPKATVQ 211

Homo sapiens (taxid: 9606)

>sp|Q60362|NAH1_METJA Na(+)/H(+) antiporter 1 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0057 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 136/303 (44%), Gaps = 16/303 (5%)

Query: 17  SEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY 76
           S+  ++ F     + L+ IL      +    L+R+  TV++L  + + +  +      + 
Sbjct: 51  SDSAMEIFEYAGPIGLIFILLGGAFTMRISLLKRVIKTVVRLDTITFLITLLISGFIFNM 110

Query: 77  FLNLPWIW--AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSV 134
            LNLP+     +L G+I AA  PA ++P   ++R+    VA  +    I    +G  ++ 
Sbjct: 111 VLNLPYTSPVGYLFGAITAATDPATLIPVFSRVRTNP-EVAITLEAESIFNDPLGIVSTS 169

Query: 135 AIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIML 194
            I G+   F  S + L+  I L   ++++GL    I+  +  ++      +V PL    +
Sbjct: 170 VILGLFGLFS-SSNPLIDLITLAGGAIVVGLLLAKIYEKI--IIHCDFHEYVAPL----V 222

Query: 195 LGGGLIVIFASEHL--GLGGAGPLGVIASAFVSSYSWSK--QGWNIEDNPVATAFEIFWM 250
           LGG +++++  + L   + G G  G +A A +  Y      +  +I+   + +  +   +
Sbjct: 223 LGGAMLLLYVGDDLLPSICGYGFSGYMAVAIMGLYLGDALFRADDIDYKYIVSFCDDLSL 282

Query: 251 IFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGV-VTRILITVLVAVGSSLNLKEKLFV 309
           +    +F   G   KLS L+   +    ++ +G + + R L   L  +GS  + KEKL+ 
Sbjct: 283 LARVFIFVFLGACIKLSMLENYFIP-GLLVALGSIFLARPLGVFLGLIGSKHSFKEKLYF 341

Query: 310 AFS 312
           A  
Sbjct: 342 ALE 344

This is a Na(+)/H(+) antiporter. Can also transport lithium.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
345491763	640	PREDICTED: LOW QUALITY PROTEIN: mitochon	0.905	0.462	0.652	1e-104
20129297	708	Na[+]/H[+] hydrogen antiporter 1, isofor	0.905	0.418	0.611	1e-103
45550940	715	Na[+]/H[+] hydrogen antiporter 1, isofor	0.905	0.413	0.611	1e-103
198471907	729	GA10571 [Drosophila pseudoobscura pseudo	0.905	0.406	0.608	1e-103
195156441	729	GL25608 [Drosophila persimilis] gi|19411	0.905	0.406	0.608	1e-103
16197865	550	GH12682p [Drosophila melanogaster]	0.896	0.532	0.614	1e-103
195338769	708	GM13782 [Drosophila sechellia] gi|194129	0.905	0.418	0.608	1e-103
326633301	715	RE57869p [Drosophila melanogaster]	0.905	0.413	0.604	1e-103
48094737	496	PREDICTED: mitochondrial sodium/hydrogen	0.981	0.647	0.598	1e-103
195471649	708	GE18398 [Drosophila yakuba] gi|194174216	0.905	0.418	0.604	1e-102

>gi|345491763|ref|XP_003426703.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial sodium/hydrogen exchanger NHA2-like [Nasonia vitripennis]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/296 (65%), Positives = 241/296 (81%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK+ALV+ILTRAGLDLDP A++ +  TV K+GL+PW VEA+ V + THY + LPWIW FL
Sbjct: 219 RKIALVIILTRAGLDLDPEAMKSMKITVPKVGLLPWLVEALVVSVGTHYLMGLPWIWGFL 278

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LRSKGYGVAKGIPTL+IAV+G+ DA SVAI+GI+HS MFS 
Sbjct: 279 LGSIIAAVSPAVVVPCLFRLRSKGYGVAKGIPTLIIAVAGIDDAASVAIYGIIHSVMFSN 338

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
           D+L Y I+ GP +++ G+ FG+IWG+L++ VPEKGDPF+VP+R++MLLGGGL+ +F SE 
Sbjct: 339 DALWYQILQGPIAIVGGIGFGVIWGALSRYVPEKGDPFMVPMRVLMLLGGGLLAVFGSEL 398

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           +  GGAGPL V+A+AFVS Y W K GW  +DNPVAT+FEIFWMIFEPILFG+TGTQ KL 
Sbjct: 399 INWGGAGPLAVVAAAFVSCYLWQKDGWEPDDNPVATSFEIFWMIFEPILFGVTGTQIKLG 458

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           EL+   V I    ++ G+V RIL+TVLV +GS LNLKEK+F+A + MAKA+VQ  L
Sbjct: 459 ELNGNTVYIGIGCLLAGIVIRILVTVLVGIGSRLNLKEKIFIALACMAKATVQAAL 514

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20129297|ref|NP_609080.1| Na[+]/H[+] hydrogen antiporter 1, isoform B [Drosophila melanogaster] gi|22945816|gb|AAN10603.1| Na[+]/H[+] hydrogen antiporter 1, isoform B [Drosophila melanogaster] gi|162951767|gb|ABY21745.1| LP02791p [Drosophila melanogaster]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/296 (61%), Positives = 227/296 (76%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 301 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 360

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 361 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 420

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 421 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 480

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct: 481 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 540

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RIL T  +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct: 541 ELDSHTVSIGAACIFTGAILRILTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 596

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|45550940|ref|NP_723224.2| Na[+]/H[+] hydrogen antiporter 1, isoform A [Drosophila melanogaster] gi|45445032|gb|AAF52449.2| Na[+]/H[+] hydrogen antiporter 1, isoform A [Drosophila melanogaster]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/296 (61%), Positives = 227/296 (76%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 308 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 367

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 368 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 427

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 428 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 487

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct: 488 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 547

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RIL T  +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct: 548 ELDSHTVSIGAACIFTGAILRILTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 603

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|198471907|ref|XP_001355766.2| GA10571 [Drosophila pseudoobscura pseudoobscura] gi|198139519|gb|EAL32825.2| GA10571 [Drosophila pseudoobscura pseudoobscura]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 228/296 (77%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ V + +H+ L+LPWIW+FL
Sbjct: 322 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVIVAVMSHFLLDLPWIWSFL 381

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 382 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 441

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 442 KGLAYQIAQAPVCILGGLGFGVLWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 501

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFG+TG+  K+ 
Sbjct: 502 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGITGSTIKIR 561

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RI  T  +A G  LNLKEK FV  SWMAKA+VQ  L
Sbjct: 562 ELDSHTVSIGAACIFTGAILRIFTTAGIAFGDRLNLKEKFFVGLSWMAKATVQAAL 617

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195156441|ref|XP_002019108.1| GL25608 [Drosophila persimilis] gi|194115261|gb|EDW37304.1| GL25608 [Drosophila persimilis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 228/296 (77%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ V + +H+ L+LPWIW+FL
Sbjct: 322 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVIVAVMSHFLLDLPWIWSFL 381

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 382 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 441

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 442 KGLAYQIAQAPVCILGGLGFGVLWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 501

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFG+TG+  K+ 
Sbjct: 502 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGITGSTIKIR 561

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RI  T  +A G  LNLKEK FV  SWMAKA+VQ  L
Sbjct: 562 ELDSHTVSIGAACIFTGAILRIFTTAGIAFGDRLNLKEKFFVGLSWMAKATVQAAL 617

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16197865|gb|AAL13583.1| GH12682p [Drosophila melanogaster]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/293 (61%), Positives = 226/293 (77%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 143 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 202

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 203 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 262

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 263 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 322

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct: 323 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 382

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
           ELD   VSI A  +  G + RIL T  +A G  LN KEK FV  SWMAKA+VQ
Sbjct: 383 ELDSHTVSIGAACIFTGAILRILTTAGIAFGDRLNTKEKFFVGLSWMAKATVQ 435

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338769|ref|XP_002035996.1| GM13782 [Drosophila sechellia] gi|194129876|gb|EDW51919.1| GM13782 [Drosophila sechellia]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 226/296 (76%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 301 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 360

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 361 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 420

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 421 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 480

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct: 481 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 540

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RI  T  +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct: 541 ELDSHTVSIGAACIFTGAILRIFTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 596

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326633301|gb|ADZ99418.1| RE57869p [Drosophila melanogaster]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/296 (60%), Positives = 226/296 (76%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTR GL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 308 RKFALTIILTRTGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 367

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 368 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 427

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 428 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 487

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFE+FWMIFEPILFGLTG   K+ 
Sbjct: 488 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEVFWMIFEPILFGLTGATIKIR 547

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VSI A  +  G + RIL T  +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct: 548 ELDSHTVSIGAACIFTGAILRILTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 603

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48094737|ref|XP_394256.1| PREDICTED: mitochondrial sodium/hydrogen exchanger NHA2-like [Apis mellifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/334 (59%), Positives = 254/334 (76%), Gaps = 13/334 (3%)

Query: 3   KHLFSLFGAFIGGNSEM--------VLD--EFSSY--RKMALVVILTRAGLDLDPPALRR 50
           +H F L    I G+ +         + D  E+S    RK+ALV+ILTRAGLDLDP AL+R
Sbjct: 73  QHKFDLENGRINGSRKKSAYSLTSSIRDKIEYSEELERKIALVIILTRAGLDLDPNALKR 132

Query: 51  LWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSK 110
           L  TV KLGL+PW +EA  + I T Y L+LPWIW F  GS+ AAVSPAVVVPCLF+LR+K
Sbjct: 133 LKITVPKLGLIPWLIEAFVIAILTKYLLDLPWIWGFFLGSVIAAVSPAVVVPCLFRLRAK 192

Query: 111 GYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLL-YNIVLGPSSLIIGLAFGI 169
           GYGVAKGIPTL+IAVSG+ DA SVAI GI+ S MF  +++L Y I+ GP +++ GL FG+
Sbjct: 193 GYGVAKGIPTLIIAVSGIDDAASVAIHGIIQSIMFFPNAILWYQILQGPIAIVGGLGFGV 252

Query: 170 IWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSW 229
           +WG LAK VPEKGDPF+VP+R++MLLGGGL+ +F SE + LGGAGPL V+A+AF+S Y W
Sbjct: 253 LWGWLAKYVPEKGDPFMVPMRVLMLLGGGLLAVFGSEAIELGGAGPLAVVAAAFISCYFW 312

Query: 230 SKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRI 289
            KQGW ++DNPVATAFEIFWMIFEPILFG+TG Q K+ EL+ + V +    ++ G+V R+
Sbjct: 313 QKQGWEVDDNPVATAFEIFWMIFEPILFGVTGAQIKIDELEGKTVYLGISCLLAGIVIRV 372

Query: 290 LITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           + T+LV VGS+LNLKEK+F+A SWMAKA+VQ  L
Sbjct: 373 VATILVGVGSNLNLKEKIFIALSWMAKATVQAAL 406

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471649|ref|XP_002088115.1| GE18398 [Drosophila yakuba] gi|194174216|gb|EDW87827.1| GE18398 [Drosophila yakuba]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/296 (60%), Positives = 226/296 (76%)

Query: 28  RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
           RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct: 301 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 360

Query: 88  TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
            GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct: 361 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 420

Query: 148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
             L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR ++L  GGL+ I+ SE 
Sbjct: 421 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 480

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct: 481 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 540

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
           ELD   VS+ A  +  G + RI  T  +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct: 541 ELDSHTVSVGAACIFTGAILRIFTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 596

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
FB|FBgn0031865	715	Nha1 "Na[+]/H[+] hydrogen anti	0.905	0.413	0.567	1.2e-90
UNIPROTKB|F1S110	514	LOC100522506 "Uncharacterized	0.896	0.570	0.363	2.5e-49
UNIPROTKB|E9PE63	480	SLC9B2 "Mitochondrial sodium/h	0.889	0.606	0.344	1.8e-46
UNIPROTKB|Q86UD5	537	SLC9B2 "Mitochondrial sodium/h	0.889	0.541	0.344	1.8e-46
UNIPROTKB|F1S111	537	LOC100739358 "Uncharacterized	0.889	0.541	0.337	2.7e-45
MGI|MGI:1921696	565	Slc9b1 "solute carrier family	0.899	0.520	0.337	2.7e-45
UNIPROTKB|F1MFR7	513	NHEDC1 "Uncharacterized protei	0.914	0.582	0.340	3.4e-45
RGD|1305087	494	Slc9b1 "solute carrier family	0.899	0.595	0.331	1.2e-44
UNIPROTKB|E2R6V2	537	NHEDC2 "Uncharacterized protei	0.926	0.564	0.327	3.1e-44
UNIPROTKB|E1BFC4	535	SLC9B2 "Uncharacterized protei	0.889	0.543	0.331	6.4e-44

FB|FBgn0031865 Nha1 "Na[+]/H[+] hydrogen antiporter 1" [Drosophila melanogaster (taxid:7227)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 168/296 (56%), Positives = 209/296 (70%)

Query:    28 RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFL 87
             RK AL +ILTRAGL+++P A ++++ T+LKLG++PW VEA+ + + +H+ L+LPWIWAFL
Sbjct:   308 RKFALTIILTRAGLEMEPEAFKKVYKTILKLGIIPWCVEAVVMAVMSHFLLDLPWIWAFL 367

Query:    88 TGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE 147
              GSI AAVSPAVVVPCLF+LR+KGYGVAKGIPTLV+AV+G+ DA SVAIFGI+ + MFS+
Sbjct:   368 LGSIIAAVSPAVVVPCLFRLRTKGYGVAKGIPTLVVAVAGVDDALSVAIFGIISTVMFSD 427

Query:   148 DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFASEH 207
               L Y I   P  ++ GL FG++WGSLA++ PEKGD +VVPLR           I+ SE 
Sbjct:   428 KGLAYQIAQAPVCILGGLGFGVVWGSLARIFPEKGDAYVVPLRTLLLFTGGLMAIYGSEE 487

Query:   208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
             LG  GAGPL V+ SAFVS+  W K GW++EDNPV+TAFEIFWMIFEPILFGLTG   K+ 
Sbjct:   488 LGFEGAGPLAVVFSAFVSNLFWCKDGWDVEDNPVSTAFEIFWMIFEPILFGLTGATIKIR 547

Query:   268 ELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
             ELD                        +A G  LN KEK FV  SWMAKA+VQ  L
Sbjct:   548 ELDSHTVSIGAACIFTGAILRILTTAGIAFGDRLNTKEKFFVGLSWMAKATVQAAL 603

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0003096 "renal sodium ion transport" evidence=IMP

GO:0005903 "brush border" evidence=IDA

UNIPROTKB|F1S110 LOC100522506 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 109/300 (36%), Positives = 160/300 (53%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             S+ R  AL ++L RAGL LDP AL+RL    L+L + P  +EA S  + +HY +  PW W
Sbjct:   155 STLRSTALTIVLVRAGLGLDPQALKRLKRVCLRLSMGPCLMEACSAAVISHYLMKFPWQW 214

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
             AFL G +  AVSPAV+VP + +L+ KGYGV KGIPTL+IA S + D  ++  +   +S +
Sbjct:   215 AFLLGFVVGAVSPAVIVPSMLRLQEKGYGVEKGIPTLLIAASSLDDIVAITGYNTCYSIV 274

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPL-RXXXXXXXXXXVIF 203
             FS  S L NI+     ++IG+  G++ G  A+  P + D   +PL R           + 
Sbjct:   275 FSSGSELSNILTSFRDVVIGVVSGVVLGIFARYFPSR-DQGKLPLKRAFLILSMCITAVL 333

Query:   204 ASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQ 263
                H+G   AG L  +A +FV+   W+K+   ++    AT     W IF+P+LFGL G +
Sbjct:   334 GGHHIGSHAAGGLCTLALSFVAGTGWAKEKIKVQKIIAAT-----WNIFQPLLFGLVGAE 388

Query:   264 FKLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
               ++ L                        ++   +  N KEK+F+AFSWM KA+VQ  L
Sbjct:   389 VSVASLKSNAIGICVTNMSLALLIRISSTFVLMSFAGFNFKEKIFIAFSWMPKATVQAVL 448

GO:0016021 "integral to membrane" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

UNIPROTKB|E9PE63 SLC9B2 "Mitochondrial sodium/hydrogen exchanger 9B2" [Homo sapiens (taxid:9606)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 102/296 (34%), Positives = 155/296 (52%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             SS R +AL +IL RAGL LD  AL++L    ++L + P  VEA +  +  HY L LPW W
Sbjct:   117 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 176

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              F+ G +  AVSPAVVVP +  L+  GYGV KG+PTL++A     D  ++  F       
Sbjct:   177 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 236

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S ++N++ G   ++IG+A G + G   +  P +    +V  R           +F+
Sbjct:   237 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFS 296

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
             S H G  G+G L  +  AF++   W+ +   +E   +A A    W IF+P+LFGL G + 
Sbjct:   297 SVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVE-KIIAVA----WDIFQPLLFGLIGAEV 351

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
              ++ L P+                     L+   +  NLKEK+F++F+W+ KA+VQ
Sbjct:   352 SIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQ 407

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q86UD5 SLC9B2 "Mitochondrial sodium/hydrogen exchanger 9B2" [Homo sapiens (taxid:9606)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 102/296 (34%), Positives = 155/296 (52%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             SS R +AL +IL RAGL LD  AL++L    ++L + P  VEA +  +  HY L LPW W
Sbjct:   174 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 233

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              F+ G +  AVSPAVVVP +  L+  GYGV KG+PTL++A     D  ++  F       
Sbjct:   234 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 293

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S ++N++ G   ++IG+A G + G   +  P +    +V  R           +F+
Sbjct:   294 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFS 353

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
             S H G  G+G L  +  AF++   W+ +   +E   +A A    W IF+P+LFGL G + 
Sbjct:   354 SVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVE-KIIAVA----WDIFQPLLFGLIGAEV 408

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
              ++ L P+                     L+   +  NLKEK+F++F+W+ KA+VQ
Sbjct:   409 SIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQ 464

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

UNIPROTKB|F1S111 LOC100739358 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 100/296 (33%), Positives = 155/296 (52%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             S+ R +AL VIL RAGL LD  AL++L    ++L + P  VEA S  +  H+ + LPW W
Sbjct:   174 SALRSIALSVILVRAGLGLDSNALKKLKGVCVRLSMGPCLVEACSSALLAHFLMGLPWQW 233

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              F+ G +  AVSPAVVVP +  L+  GYGVAKG+PTL++A     D  ++  F       
Sbjct:   234 GFMLGFVVGAVSPAVVVPSMLLLQEGGYGVAKGVPTLLMAAGSFDDILAITGFNTCLGMA 293

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S ++N++ G   ++IG+A G + G   +  P      +V  R           +F+
Sbjct:   294 FSTGSTVFNVLKGVLEVVIGMAAGFLLGFFIQYFPSSDQDKLVWKRAYLVLGLAVLAVFS 353

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
             S + G  G+G L  +  AF++   W+    ++E   +A A    W IF+P+LFGL G + 
Sbjct:   354 STYFGFPGSGGLCTLVMAFLAGKGWASTKVDVE-KIIAVA----WSIFQPLLFGLIGAEV 408

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
              ++ L P+                     L+   +  N+KEK+F++F+W+ KA+VQ
Sbjct:   409 SIASLRPETVGLCVATLGIAVLIRILTTYLMVCFAGFNIKEKIFISFAWLPKATVQ 464

GO:0016021 "integral to membrane" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

MGI|MGI:1921696 Slc9b1 "solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1" [Mus musculus (taxid:10090)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 101/299 (33%), Positives = 155/299 (51%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             S+ R  AL +IL RAGL LDP AL+ L    L+L   P  +EA S  + +H+ +N PW W
Sbjct:   205 SALRNTALTIILVRAGLGLDPQALKHLKGVCLRLSFGPCFLEACSAALFSHFIMNFPWQW 264

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              FL G +  AVSPAVVVP +  L+  GYGV KGIPTL++A S M D  ++  F    S +
Sbjct:   265 GFLLGFVLGAVSPAVVVPNMLMLQENGYGVEKGIPTLLVAASSMDDIVAITGFNTFLSIV 324

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S++ NI+     ++IG+  GI+ G   +  P      +   R           +  
Sbjct:   325 FSSGSVISNILSSLRDVLIGVLVGIVMGVFVQYFPSGDQERLTQRRAFLVLSMCISAVLG 384

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
              +H+GL G+G L  +  +F+++  W+++   I+   VA      W +F+P+LFGL GT+ 
Sbjct:   385 CQHIGLHGSGGLVTLVLSFMAAKRWAEEKVGIQ-KIVANT----WNVFQPLLFGLVGTEV 439

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
              +  L+ +                     ++   ++   KEK+F+A SW+ KA+VQ  L
Sbjct:   440 SVESLESKTIGMCLATLGLALSVRILSTFVLMSFANFRFKEKVFIALSWIPKATVQAVL 498

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1MFR7 NHEDC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 104/305 (34%), Positives = 153/305 (50%)

Query:    20 VLDEFSS-YRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFL 78
             + +E SS  R  AL +IL RAGL LDP AL+ L    L+L + P  +EA S  + +H+ +
Sbjct:   147 ISNELSSTLRNTALTIILVRAGLGLDPQALKNLKRVCLRLSMGPCLMEACSTAVISHFLM 206

Query:    79 NLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFG 138
             N PW W FL G +  AVSPAVVVP +  L+ KGYG+ KGIPTL+IA S + D  ++  F 
Sbjct:   207 NFPWQWGFLLGFVVGAVSPAVVVPSMLHLQEKGYGIEKGIPTLLIAASSLDDILAITGFN 266

Query:   139 IVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXX 198
                S +FS  ++  N++     +I+G+  GI+ G  A+  P      +   R        
Sbjct:   267 ACFSIVFSSGNISSNVLSSLRDVILGVLLGIVLGMFARHFPGSDQGKLEVKRAFLILSMC 326

Query:   199 XXVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFG 258
                +  S   G+  AG L  +  +F +   WSK+   ++   + TA    W IF+P+LFG
Sbjct:   327 ISAVLGSHRFGMNTAGGLCALVLSFTAGTGWSKEKVRVQ-KIIGTA----WDIFQPLLFG 381

Query:   259 LTGTQFKLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKAS 318
             L G +  +  L                        ++   +  N KEK+F+A SWM KA+
Sbjct:   382 LVGAEVSVLSLKSNAIGLSVGTMSLALLIRISFTFVLMSCAGFNFKEKIFIALSWMPKAT 441

Query:   319 VQLFL 323
             VQ  L
Sbjct:   442 VQAVL 446

GO:0016021 "integral to membrane" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

RGD|1305087 Slc9b1 "solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 99/299 (33%), Positives = 155/299 (51%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             S+ R  AL +IL RAGL LDP AL+ L    L+L   P  +EA S  + +H+ +N PW W
Sbjct:   134 SALRNTALTIILIRAGLGLDPQALKHLKGVCLRLSFGPCLLEACSAALFSHFIMNFPWQW 193

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              FL G +  AVSPAVVVP +  L+  GYGV KGIPTL++A S M D  ++  F    S +
Sbjct:   194 GFLLGFVLGAVSPAVVVPNMLLLQENGYGVEKGIPTLLVAASSMDDIVAITGFNTFLSIV 253

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S++ NI+     ++IG+  G++ G   +  P +    +   R           +  
Sbjct:   254 FSSGSVISNILSSLRDVLIGVLVGVVMGIFVQYFPSRDQERLTQRRAFLVLSMCVSAVLG 313

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
              +H+GL G+G L  +  +F+++  W+++   ++   VA      W IF+P+LFGL GT+ 
Sbjct:   314 CQHIGLHGSGGLVTLVLSFMAAKRWAEEKVGVQ-KLVANT----WNIFQPLLFGLVGTEV 368

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQLFL 323
              +  L+ +                     ++   ++    EK+F+A SW+ KA+VQ  L
Sbjct:   369 SVESLESKTIGMCIATLCLALLVRILATFVLMSFANFRFMEKVFIALSWIPKATVQAVL 427

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R6V2 NHEDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 101/308 (32%), Positives = 158/308 (51%)

Query:    13 IGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVI 72
             I  N ++     S+ R +AL VIL RAGL LD  AL++L    ++L + P  VEA +  +
Sbjct:   162 ISDNVQIKYKWSSALRSIALSVILVRAGLGLDSKALKKLKGVCIRLSMCPCLVEACTSAL 221

Query:    73 ATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDAT 132
               H+ + LPW W F+ G +  AVSPAVVVP +  L+  GYGV KGIPTL++A     D  
Sbjct:   222 LAHFLMGLPWQWGFILGFVLGAVSPAVVVPSMLLLQEGGYGVEKGIPTLLMAAGSFDDIL 281

Query:   133 SVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXX 192
             ++  F       FS  S ++N+  G   ++IG+A G + G   +  P      +V  R  
Sbjct:   282 AITGFNTCLGMAFSTGSTVFNVFRGILEVVIGVAAGSLLGFFIQYFPSSDQDKLVWKRAF 341

Query:   193 XXXXXXXXVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIF 252
                      +F+S + G  G+G L  +  +F++S  W+ +   +E   +A A    W IF
Sbjct:   342 LVLGLSVLAVFSSVYFGFPGSGGLCTLVMSFLASLKWAGEKAEVE-KIIAGA----WYIF 396

Query:   253 EPILFGLTGTQFKLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFS 312
             +P+LFGL G +  ++ L P+                     L+   +  N+KEK+F++F+
Sbjct:   397 QPLLFGLIGAEVSIASLRPETVGLCVGVLGIAVLIRILTTFLMVCFAGFNIKEKIFISFA 456

Query:   313 WMAKASVQ 320
             W+ KA+VQ
Sbjct:   457 WLPKATVQ 464

GO:0016021 "integral to membrane" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

UNIPROTKB|E1BFC4 SLC9B2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 98/296 (33%), Positives = 155/296 (52%)

Query:    25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84
             S+ R +AL VIL RAGL LD  AL++L    ++L L P  +EA +  +  ++ + LPW W
Sbjct:   173 SALRSIALSVILVRAGLGLDSNALKKLKGVCVRLSLGPCLIEACTSAVLAYFLMGLPWQW 232

Query:    85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144
              F+ G +  AVSPAVVVP +  L+  GYGV KGIPTL++A     D  ++  F       
Sbjct:   233 GFMLGFVLGAVSPAVVVPSMLLLQEGGYGVEKGIPTLLMAAGSFDDILAITGFNTCLGMA 292

Query:   145 FSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRXXXXXXXXXXVIFA 204
             FS  S ++N++ G   +IIG+  G++ G   +  P      +V  R           +F+
Sbjct:   293 FSTGSTVFNVLKGVLEVIIGVVTGLVLGFFIQYFPSSDQDKLVWKRAFLVLGLSVLAVFS 352

Query:   205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQF 264
             S + G  G+G L  + +AF++   W+    ++E   +A A    W IF+P+LFGL G + 
Sbjct:   353 STYFGFPGSGGLCTLVTAFLAGRGWASTKTDVE-KVIAVA----WDIFQPLLFGLIGAEV 407

Query:   265 KLSELDPQXXXXXXXXXXXXXXXXXXXXXLVAVGSSLNLKEKLFVAFSWMAKASVQ 320
              ++ L P+                     L+   +  N+KEK+F++F+W+ KA+VQ
Sbjct:   408 LITALRPETIGLCVATLGIAVLIRILVTYLMVCFAGFNIKEKIFISFAWLPKATVQ 463

GO:0016021 "integral to membrane" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	327
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	6e-14
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	8e-12

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 69/316 (21%), Positives = 133/316 (42%), Gaps = 22/316 (6%)

Query: 11  AFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV 70
             +   S  +  +   +  + L ++L   GL+LD   LRR+W ++L L L    + A+ +
Sbjct: 46  PGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGI 105

Query: 71  VIATHYFL-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMG 129
            +  H+ L  +P   AFL G+I +   P  V P       K   V K I T++   S + 
Sbjct: 106 GLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIF-----KRVRVPKRIRTILEGESLLN 160

Query: 130 DATSVAIFGIVHSFMFSE------DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGD 183
           D   + +F +  + +          +LL  ++     +++GL  G + G L + +  +G 
Sbjct: 161 DGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW 220

Query: 184 PFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSW-SKQGWNIEDNPVA 242
              +   ++ LL      + A     LG +G L V+ +  V   +             ++
Sbjct: 221 TSPLLETLLTLLLAFAAYLLAEA---LGVSGILAVVVAGLVLGEAVRINLSPASARLRLS 277

Query: 243 TAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS--- 299
           + +E+   +   +LF L G Q  LS L    +    + ++  ++ R L   L   GS   
Sbjct: 278 SFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLK 337

Query: 300 ---SLNLKEKLFVAFS 312
               L  +E+LF++++
Sbjct: 338 LRDPLPWRERLFLSWA 353

Length = 429

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 18/285 (6%)

Query: 32  LVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVE-AISVVIATHYFLNLPWIWAFLTGS 90
           L ++L  AGL+LD   LR+   ++L L L+   +   + +++A    L +P + A L G+
Sbjct: 55  LPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLEALLFGA 114

Query: 91  IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSL 150
             +A SP VV+  L +       +   + TL++  S + DA +V +  ++ +   +    
Sbjct: 115 ALSATSPVVVLAILKERG----RLNTRLGTLILGESVLNDAVAVVLLAVLLAL--AGVGG 168

Query: 151 LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEH 207
           L ++ L     ++    G++ G +   +      F      L ++++L   L+    +E 
Sbjct: 169 LSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAEL 228

Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
           LGL G   LG   +  V S        + +  P           F P+ F   G    LS
Sbjct: 229 LGLSGI--LGAFLAGLVLSNYAFANELSEKLEPFGYGL------FLPLFFVSVGLSLDLS 280

Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFS 312
            L   ++ +  ++++  ++ ++L   L+A    L+L+E L V F 
Sbjct: 281 SLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFG 325

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	99.98
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.97
KOG1965|consensus	575		99.91
KOG4505|consensus	467		99.9
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.84
KOG1650|consensus	769		99.83
KOG1966|consensus	670		99.77
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.53
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.27
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	98.64
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.59
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	98.35
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.33
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	98.31
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	98.28
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	98.27
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.57
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.19
COG0385	319	Predicted Na+-dependent transporter [General funct	97.12
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	97.05
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	96.77
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	96.41
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	96.34
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	95.91
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.89
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	95.1
TIGR00841	286	bass bile acid transporter. Functionally character	94.98
COG2431	297	Predicted membrane protein [Function unknown]	94.36
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.11
TIGR00698	335	conserved hypothetical integral membrane protein.	94.0
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	93.68
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	93.67
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	93.07
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	92.32
COG2855	334	Predicted membrane protein [Function unknown]	91.01
TIGR00698	335	conserved hypothetical integral membrane protein.	90.31
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	90.18
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.89
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.61
PRK03818	552	putative transporter; Validated	88.47
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	88.47
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	87.78
PRK10669	558	putative cation:proton antiport protein; Provision	87.66
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	86.03
PRK05326	562	potassium/proton antiporter; Reviewed	85.31
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	85.13
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	84.84
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	84.38
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	84.37
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	82.13
PRK04972	558	putative transporter; Provisional	81.8
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	81.74
PRK04972	558	putative transporter; Provisional	80.58
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	80.55

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=7.5e-38  Score=309.43  Aligned_cols=310  Identities=21%  Similarity=0.228  Sum_probs=251.6

Q ss_pred             chhhhhhhheecccccccc--c---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           3 KHLFSLFGAFIGGNSEMVL--D---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~--~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      +..|+++|+++||++++..  +   ..+.++++++++++|.+|+|+|++++||+++++..+++.++++++...+..++++
T Consensus        33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l  112 (562)
T PRK05326         33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL  112 (562)
T ss_pred             HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999998732  2   3468999999999999999999999999999999999999999988878888899


Q ss_pred             cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCc--hHHHHHH
Q psy3081          78 LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSED--SLLYNIV  155 (327)
Q Consensus        78 ~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~--~~~~~~~  155 (327)
                      ++++|..++++|+++++|||+++.++++|.+   ...++|+++++++||.+||.++++++.++.++..++.  .....+.
T Consensus       113 ~g~~~~~alllgai~s~Td~a~v~~iL~~~~---l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~  189 (562)
T PRK05326        113 LGLDWLEGLLLGAIVGSTDAAAVFSLLRGKG---LNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLL  189 (562)
T ss_pred             hcCCHHHHHHHhhhhccCchHHHHHHHhccC---CCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            9999999999999999999999999987754   2246799999999999999999999988887665433  2222344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081         156 LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN  235 (327)
Q Consensus       156 ~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~  235 (327)
                      .+..++..++++|.+.+++..++.||.+...++.+..++++.++.++..+|.+  |.|+++|++++|++++|...     
T Consensus       190 ~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~~l~~~~~a~~l--g~Sg~la~~iaGl~l~n~~~-----  262 (562)
T PRK05326        190 LFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLIFALTAAL--GGSGFLAVYLAGLVLGNRPI-----  262 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHhCCcc-----
Confidence            56777888888898889888888777643223345667777888899999987  77999999999999987321     


Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081         236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAI-IVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~-~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      +.++++++..+.+..+++|+||+++|+++|++.+.. ..+..++ .++..+++|+++++++.+..+++|||+.+++.. .
T Consensus       263 ~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g  340 (562)
T PRK05326        263 RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-G  340 (562)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-c
Confidence            123345555566777899999999999999988743 3333333 344567899999999999999999999999664 4


Q ss_pred             cchhhhhhcc
Q psy3081         315 AKASVQLFLY  324 (327)
Q Consensus       315 pr~~v~~al~  324 (327)
                      +||+++.++|
T Consensus       341 ~RG~v~i~lA  350 (562)
T PRK05326        341 LRGAVPIVLA  350 (562)
T ss_pred             chhHHHHHHH
Confidence            8999998876

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-34  Score=272.77  Aligned_cols=307  Identities=19%  Similarity=0.173  Sum_probs=234.1

Q ss_pred             chhhhhhhheecccccc-cc---ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhh-hhhhchhHHHHHHHHHHHHHHH-
Q psy3081           3 KHLFSLFGAFIGGNSEM-VL---DEFSSYRKMALVVILTRAGLDLDPPALRRLWST-VLKLGLVPWAVEAISVVIATHY-   76 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~-~~---~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~-   76 (327)
                      +..|+++|+++||.+.. ..   +..+.++|+|++++||.+|+|.|++++||++|+ ....+..++..+..... ...+ 
T Consensus        33 vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~  111 (397)
T COG0475          33 VLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGL-LLLLG  111 (397)
T ss_pred             HHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHH-HHHHH
Confidence            46799999999995543 22   234579999999999999999999999999999 66555666665543322 2222 


Q ss_pred             hcCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy3081          77 FLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVL  156 (327)
Q Consensus        77 ~~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~  156 (327)
                      .+++++..++++|.+++.||.+++.++++|+++.    ++|.+|.+++.+.+||+.++++++++..+.+++......+..
T Consensus       112 ~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~----~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~  187 (397)
T COG0475         112 ILGLSLIAALFLGAALALSSTAIVLKILMELGLL----KTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILG  187 (397)
T ss_pred             HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHH
Confidence            4899999999999999999999999999987654    379999999999999999999999999887665432222222


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhhcCCCCC-CccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCC
Q psy3081         157 GPSSLIIGLAFGIIWG-SLAKVVPEKGDP-FVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGW  234 (327)
Q Consensus       157 ~~~~i~~g~~~g~~~g-~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~  234 (327)
                      ....+..-..+-...+ |+.++..|+..+ +.++.....++..++...+.+|..  +.|..+|+|++|.+++...     
T Consensus       188 ~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~--gls~ilGAFlaGl~ls~~~-----  260 (397)
T COG0475         188 LLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELL--GLSMILGAFLAGLLLSESE-----  260 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--ChhHHHHHHHHHHHhcccc-----
Confidence            2222221111112223 555666665543 223445566677888889999998  5579999999998887421     


Q ss_pred             CCCC-chHHhHHHHHHH-HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhc
Q psy3081         235 NIED-NPVATAFEIFWM-IFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFS  312 (327)
Q Consensus       235 ~~~~-~~l~~~~~~~~~-~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~  312 (327)
                        .+ ++++++++++.+ ++.|+||+.+|+++|++.+.. .+...+......+++|.+++++.++..|+++|++...|.+
T Consensus       261 --~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~-~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~  337 (397)
T COG0475         261 --YRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE-NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLL  337 (397)
T ss_pred             --cchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhh
Confidence              23 689999999998 999999999999999998844 3445677778889999999999999999999999999888


Q ss_pred             cccchhhhhhcc
Q psy3081         313 WMAKASVQLFLY  324 (327)
Q Consensus       313 ~~pr~~v~~al~  324 (327)
                      +.++||++.++.
T Consensus       338 ~~~~ge~~~v~~  349 (397)
T COG0475         338 LRQGGEFAFVLA  349 (397)
T ss_pred             hhhhhHHHHHHH
Confidence            888888886543

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-34  Score=272.38  Aligned_cols=313  Identities=24%  Similarity=0.369  Sum_probs=250.0

Q ss_pred             chhhhhhhheeccccccccc-----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD-----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~-----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      .+.+++.|++.||.+++..+     +.+.+..+.++.++|..|+|+|.+++||+++++..+++.+++++....++..|++
T Consensus        33 i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l  112 (429)
T COG0025          33 IPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL  112 (429)
T ss_pred             hHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999998877322     3446669999999999999999999999999999999999999999999998887


Q ss_pred             c-CCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHHHH
Q psy3081          78 L-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLYNI  154 (327)
Q Consensus        78 ~-~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~~~  154 (327)
                      + ++|+..|+++|++++||||+++.|+.++     .+.|||+.+++.+||.+||..+++.+.+..+...+++.  ..+..
T Consensus       113 ~~~i~~~~a~l~gAilspTDPv~v~~i~~~-----~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~  187 (429)
T COG0025         113 LPGIPLAAAFLLGAILSPTDPVAVSPIFKR-----VRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWAL  187 (429)
T ss_pred             hCChhHHHHHHHhHHhcCCCchhhHHHHhc-----CCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHH
Confidence            6 7889999999999999999999998755     44788999999999999999999999999887764332  24556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcc
Q psy3081         155 VLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSK  231 (327)
Q Consensus       155 ~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~  231 (327)
                      ..+...+.+|+++|.+.|++..|+.|+.+++   +...+....+..++..+..+|.+  |.||++|++++|++.++. .+
T Consensus       188 ~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l--~~SGilAvvvaG~~~~~~-~~  264 (429)
T COG0025         188 LLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL--GVSGILAVVVAGLVLGEA-VR  264 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHh--CcchHHHHHHHHHHHhhh-hh
Confidence            6678888888888888888877777665532   23456677788899999999998  789999999999988721 11


Q ss_pred             cCCCCCC-chHHh-HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCh
Q psy3081         232 QGWNIED-NPVAT-AFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS------SLNL  303 (327)
Q Consensus       232 ~~~~~~~-~~l~~-~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~------~~~~  303 (327)
                      .+.+..+ ++..+ .-|.++.+++.+.|++.|.+++....+...++..++.+...++.|++++++..+.+      ..+|
T Consensus       265 ~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~  344 (429)
T COG0025         265 INLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPW  344 (429)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCH
Confidence            1101111 11222 22455568999999999999999887443356666777788999999999998874      3799


Q ss_pred             hhHHHHhhccc-cchhhhhhccC
Q psy3081         304 KEKLFVAFSWM-AKASVQLFLYL  325 (327)
Q Consensus       304 ~e~~~~~~~~~-pr~~v~~al~~  325 (327)
                      ||+.++  +|. |||.+++|++.
T Consensus       345 ~~~~~l--~w~G~RG~vsla~al  365 (429)
T COG0025         345 RERLFL--SWAGPRGVVSLALAL  365 (429)
T ss_pred             HHHHHH--hhcccccHHHHHHHH
Confidence            999999  555 89999988764

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=1.3e-33  Score=287.98  Aligned_cols=308  Identities=13%  Similarity=0.176  Sum_probs=230.5

Q ss_pred             chhhhhhhheeccccccccc-------------cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHH
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD-------------EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAIS   69 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~-------------~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~   69 (327)
                      +..|+++|+++||+++|..+             ..+.++++|++++||.+|+|+|++.+||++|+++.+++.++++++.+
T Consensus        70 ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~l  149 (832)
T PLN03159         70 VISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCI  149 (832)
T ss_pred             hHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            45799999999999988432             35689999999999999999999999999999999999999999765


Q ss_pred             HHHHHHHhcCCc------HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy3081          70 VVIATHYFLNLP------WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSF  143 (327)
Q Consensus        70 ~~~~~~~~~~~~------~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~  143 (327)
                      .....++ ++..      ...++++|.+++.||.+++.++++|++..+    ++.+++.++.+.+||+++|++++++.++
T Consensus       150 g~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~----s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        150 GLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLIN----TELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             HHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4434333 2321      335789999999999999999999987654    7999999999999999999999988776


Q ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy3081         144 MFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF--VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIAS  221 (327)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~  221 (327)
                      ...+......+...+..+...++..++..++.+|+.|+..+.  ..+....+++...+.+.+++|.+|+  +..+|+|++
T Consensus       225 ~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl--~~ilGAFla  302 (832)
T PLN03159        225 AENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGT--HSVFGAFVF  302 (832)
T ss_pred             HhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCc--cHHHHHHHH
Confidence            554332211121111112222222223344555665554321  1233445555566777888999865  589998888


Q ss_pred             HHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3081         222 AFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELDP-QIVSIAAIIVIGGVVTRILITVLVAVGS  299 (327)
Q Consensus       222 g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~-~~~~~~~~~~~~~~i~r~~~~~l~~~~~  299 (327)
                      |+++..    .   +..+++.++++.+. .++.|+||+.+|+++|+..+.. ..+...+++++.++++|++++++.++..
T Consensus       303 Gl~lp~----~---~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~  375 (832)
T PLN03159        303 GLVIPN----G---PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFY  375 (832)
T ss_pred             hhccCC----c---chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887652    1   13456788888874 6999999999999999987743 2344556667778899999999999999


Q ss_pred             CCChhhHHHHhhccccchhhhhhcc
Q psy3081         300 SLNLKEKLFVAFSWMAKASVQLFLY  324 (327)
Q Consensus       300 ~~~~~e~~~~~~~~~pr~~v~~al~  324 (327)
                      ++++||++.+|+.|.+||+++..++
T Consensus       376 g~~~~eal~lG~lm~~kG~~~Lii~  400 (832)
T PLN03159        376 TMPFREGITLGFLMNTKGLVEMIVL  400 (832)
T ss_pred             CCCHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999999999999999987553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=2.3e-33  Score=279.08  Aligned_cols=306  Identities=16%  Similarity=0.143  Sum_probs=231.3

Q ss_pred             chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      +..|+++|+++||++++..+   ..+.++|+|++++||.+|+|+|++++++.+++++.++..++.+++...+ ...+.+|
T Consensus        32 vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~-~~~~~~g  110 (621)
T PRK03562         32 VLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLG-LFCMLLG  110 (621)
T ss_pred             HHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence            56899999999999988543   3568999999999999999999999999999999999998888866544 4456789


Q ss_pred             CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Q psy3081          80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS-LLYNIVLGP  158 (327)
Q Consensus        80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~-~~~~~~~~~  158 (327)
                      ++|..++++|.+++.||+++++++++|.+..    +++.++..++.+.+||+.++++++++..+...+.. .....+...
T Consensus       111 ~~~~~al~ig~~la~SStaiv~~~L~e~~~l----~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~  186 (621)
T PRK03562        111 LRWQVALLIGLGLALSSTAIAMQAMNERNLM----VTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA  186 (621)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH
Confidence            9999999999999999999999998886544    36999999999999999999998887655432111 111111111


Q ss_pred             HHHHHHHHHHHHH-HHHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCC
Q psy3081         159 SSLIIGLAFGIIW-GSLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNI  236 (327)
Q Consensus       159 ~~i~~g~~~g~~~-g~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~  236 (327)
                      ...+..++..++. .|+.+++.++..+. ..+.....++.+++.++.++|.+|  .|..+|+|++|+++++.       +
T Consensus       187 ~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~G--ls~~lGAFlAGl~l~~~-------~  257 (621)
T PRK03562        187 LKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVG--LSMALGAFLAGVLLASS-------E  257 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhcCC-------c
Confidence            1111112222222 23444444433211 123334444556666777889884  57999999999988741       2


Q ss_pred             CCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccc
Q psy3081         237 EDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAK  316 (327)
Q Consensus       237 ~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr  316 (327)
                      .++++++.++++.+++.|+||+.+|+++|+..+.. .++..+..++..+++|.++++..++..|++++|+..+|+.+.+|
T Consensus       258 ~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~-~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~  336 (621)
T PRK03562        258 YRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE-NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQG  336 (621)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhcc
Confidence            46778888999989999999999999999988733 34445555666789999999999999999999999999999999


Q ss_pred             hhhhhhc
Q psy3081         317 ASVQLFL  323 (327)
Q Consensus       317 ~~v~~al  323 (327)
                      |+.+..+
T Consensus       337 Gef~~vl  343 (621)
T PRK03562        337 GEFAFVV  343 (621)
T ss_pred             ccHHHHH
Confidence            9987554

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=100.00  E-value=3.3e-33  Score=275.72  Aligned_cols=306  Identities=12%  Similarity=0.125  Sum_probs=227.0

Q ss_pred             hhhhhhhheeccccccccccHH---------HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q psy3081           4 HLFSLFGAFIGGNSEMVLDEFS---------SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIAT   74 (327)
Q Consensus         4 ~~~ll~GillGp~~~~~~~~~~---------~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~   74 (327)
                      ++|+++|+++||++++.++..+         .+.++++++++|.+|+++|.+.++|+|+.+.++...++.++..++++++
T Consensus        42 ~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a  121 (810)
T TIGR00844        42 MVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFV  121 (810)
T ss_pred             HHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999887554221         3889999999999999999999999999999999999999988888888


Q ss_pred             HHh-cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC--Cc--h
Q psy3081          75 HYF-LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS--ED--S  149 (327)
Q Consensus        75 ~~~-~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~--~~--~  149 (327)
                      +++ .|++|..|+++|++++||||+.+.++++.-.  ....|+++++++.+||++||.++.+++.+.+.+...  .+  .
T Consensus       122 ~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~--~~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~  199 (810)
T TIGR00844       122 WILVPGLNFPASLLMGACITATDPVLAQSVVSGTF--AQKVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEI  199 (810)
T ss_pred             HHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccc--cccCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccc
Confidence            887 5999999999999999999988777764211  123678999999999999999998877666544431  11  1


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy3081         150 -LLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVS  225 (327)
Q Consensus       150 -~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~  225 (327)
                       ..|....+++.+++|+++|+++|++..++.++.+++   ..+....+.+++++.++..++.+  |+|+++|+|++|+++
T Consensus       200 ~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lL--ggSGfLAVFVAGl~~  277 (810)
T TIGR00844       200 VKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSML--GVDDLLVSFFAGTAF  277 (810)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence             123345577788888888888888777766544321   11122334455677778888876  889999999999999


Q ss_pred             hhhhcccCCCCCCchHHhHH-HHHHHHHHHHHHHHhcccccccccch-----hhHHHHHHHHHHHHHHHHHHHHHHH--h
Q psy3081         226 SYSWSKQGWNIEDNPVATAF-EIFWMIFEPILFGLTGTQFKLSELDP-----QIVSIAAIIVIGGVVTRILITVLVA--V  297 (327)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~plfF~~~G~~i~~~~l~~-----~~~~~~~~~~~~~~i~r~~~~~l~~--~  297 (327)
                      ++.....     ++.-++.+ +.+..+++..+|+++|+.+++..+..     ..|...++.+++.++.|+..+++..  .
T Consensus       278 gn~~~~~-----~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li  352 (810)
T TIGR00844       278 AWDGWFA-----QKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLI  352 (810)
T ss_pred             hcccchh-----hhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8632101     11111223 33345789999999999998876632     2333445556667789988888763  3


Q ss_pred             CCCCChhhHHHHhhccc-cchhhh
Q psy3081         298 GSSLNLKEKLFVAFSWM-AKASVQ  320 (327)
Q Consensus       298 ~~~~~~~e~~~~~~~~~-pr~~v~  320 (327)
                      ....+|||++++  +|. |||..+
T Consensus       353 ~~~~s~rErlFi--gWFGpRGIGS  374 (810)
T TIGR00844       353 PDIKSWREAMFI--GHFGPIGVGA  374 (810)
T ss_pred             ccCCCHHHHHHh--eeeccccHHH
Confidence            345799999999  788 687765

This model is specific for the fungal members of this family.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=1e-32  Score=273.95  Aligned_cols=302  Identities=19%  Similarity=0.139  Sum_probs=230.1

Q ss_pred             chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      +..|+++|+++||++++..+   ..+.++|+|++++||.+|+|+|++++++.++++..++..++.++..+.+.. .+.+|
T Consensus        32 ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~-~~~~g  110 (601)
T PRK03659         32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGL-LMLTD  110 (601)
T ss_pred             HHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence            46799999999999988543   356899999999999999999999999999999999999999887665544 44579


Q ss_pred             CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHHHHHHH
Q psy3081          80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLYNIVLG  157 (327)
Q Consensus        80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~~~~~~  157 (327)
                      ++|..++++|.+++.||++++.++++|.+..    +++.|++.++...+||+.+++++.+...+...+..  .+..... 
T Consensus       111 ~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~----~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~-  185 (601)
T PRK03659        111 FSWQAAVVGGIGLAMSSTAMALQLMREKGMN----RSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGM-  185 (601)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH-
Confidence            9999999999999999999999999886654    36899999999999999999888877655433222  1111111 


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081         158 PSSLIIGLAFGIIWG-SLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN  235 (327)
Q Consensus       158 ~~~i~~g~~~g~~~g-~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~  235 (327)
                        .+. .++..+..+ ++.+++.++..+. ..+.....++..++.+...+|.+  +.|..+|+|++|+++++.       
T Consensus       186 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~--Gls~~LGAFlaGl~l~~s-------  253 (601)
T PRK03659        186 --KVL-AFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDAL--GLSMALGTFIAGVLLAES-------  253 (601)
T ss_pred             --HHH-HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHhcCC-------
Confidence              111 111111222 3444444433211 12333444444556666778887  557999999999998751       


Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081         236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMA  315 (327)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~p  315 (327)
                      +.+++++++++++.+++.|+||+.+|+++|+..+.. .++..+.+++..+++|.+++++.++..|+++||++.+|..+.|
T Consensus       254 ~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~-~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~  332 (601)
T PRK03659        254 EYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT-HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQ  332 (601)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence            245677888999989999999999999999987733 3455556667778999999999999999999999999999999


Q ss_pred             chhhhhhc
Q psy3081         316 KASVQLFL  323 (327)
Q Consensus       316 r~~v~~al  323 (327)
                      ||+++..+
T Consensus       333 ~Gef~~vl  340 (601)
T PRK03659        333 GGEFAFVL  340 (601)
T ss_pred             cccHHHHH
Confidence            99998655

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=100.00  E-value=3.5e-32  Score=266.03  Aligned_cols=308  Identities=17%  Similarity=0.185  Sum_probs=228.7

Q ss_pred             hhhhhhhheecccccc-cc-ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCc
Q psy3081           4 HLFSLFGAFIGGNSEM-VL-DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLP   81 (327)
Q Consensus         4 ~~~ll~GillGp~~~~-~~-~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (327)
                      ..++++|+++||...+ .. .+.+.+..+++.+++|.+|+|+|++++||+++++..+++.++++++..++...++.+++|
T Consensus        26 v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~  105 (525)
T TIGR00831        26 IALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGIP  105 (525)
T ss_pred             HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5789999999986443 22 234566779999999999999999999999999999999999999988888888888999


Q ss_pred             HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC-Cc-hHHHHHHHHHH
Q psy3081          82 WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS-ED-SLLYNIVLGPS  159 (327)
Q Consensus        82 ~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~-~~-~~~~~~~~~~~  159 (327)
                      |..|+++|+++++|||+++.+++++.     +.|+|+.+++.+||.+||..+++++.+..++..+ +. +.......+..
T Consensus       106 ~~~alllGails~TDpvav~~il~~~-----~~p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~  180 (525)
T TIGR00831       106 LALALILGAVLSPTDAVAVLGTFKSI-----RAPKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAV  180 (525)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHhcC-----CCCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            99999999999999999999987653     3567999999999999999999999998877753 22 22233445666


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCc
Q psy3081         160 SLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDN  239 (327)
Q Consensus       160 ~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~  239 (327)
                      ...+|+++|.++||+..++.|+..+ ....+..++++.++.+|..+|.+  |.||++|++++|+++++..++..   .++
T Consensus       181 ~~~~gi~vG~~~g~~~~~l~~~~~~-~~~~~~~l~l~~~~~~y~lAe~l--g~SgilAvv~aGl~l~~~~~~~~---~~~  254 (525)
T TIGR00831       181 VCVGGIAAGLAVGYLAYRLLRAKID-DPLVEIALTILAPFAGFLLAERF--HFSGVIAVVAAGLILTNYGRDFS---MSP  254 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcccccccc---CCH
Confidence            7788888998888887776644322 23345667777889999999997  88999999999999997543211   222


Q ss_pred             hHHhHHHHHH----HHHHHHHHHHhcccccccccc--h-h--hH---HH-----HHHHHHHHHHHHHHHHHHHH------
Q psy3081         240 PVATAFEIFW----MIFEPILFGLTGTQFKLSELD--P-Q--IV---SI-----AAIIVIGGVVTRILITVLVA------  296 (327)
Q Consensus       240 ~l~~~~~~~~----~~~~plfF~~~G~~i~~~~l~--~-~--~~---~~-----~~~~~~~~~i~r~~~~~l~~------  296 (327)
                      +..+..+.+|    .++++++|+++|++++....+  . .  .+   ..     .+++.......|++.++...      
T Consensus       255 ~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~  334 (525)
T TIGR00831       255 TTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLK  334 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2223334444    478999999999998752111  0 0  00   01     12222334456765544331      


Q ss_pred             -hCCCCChhhHHHHhhccc-cchhhhhhcc
Q psy3081         297 -VGSSLNLKEKLFVAFSWM-AKASVQLFLY  324 (327)
Q Consensus       297 -~~~~~~~~e~~~~~~~~~-pr~~v~~al~  324 (327)
                       ...+.+|||+.++  +|. +||.|+.|+|
T Consensus       335 ~~~~~~~~r~~~v~--~w~G~RG~vslA~a  362 (525)
T TIGR00831       335 KKPMEFGTRWKHVV--SWAGLRGAIPLALA  362 (525)
T ss_pred             cccCCCChhhHHHh--eeccchHHHHHHHH
Confidence             1235789999999  555 5999998876

This model is specific for the bacterial members of this family.

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=8e-36  Score=282.42  Aligned_cols=308  Identities=26%  Similarity=0.417  Sum_probs=75.3

Q ss_pred             chhhhhhhheecccccccc----ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH--
Q psy3081           3 KHLFSLFGAFIGGNSEMVL----DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY--   76 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~----~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--   76 (327)
                      ...|+++|+++||.+++..    +..+.++++++.+++|.+|+|+|.+++||++++....++.++..+....+...++  
T Consensus        23 ~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (380)
T PF00999_consen   23 IIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFL  102 (380)
T ss_dssp             -------------------------S-SSHHHHS--SSHHHHTTGGGG--------------------------------
T ss_pred             HHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHHHhh
Confidence            4679999999999988732    3456899999999999999999999999999999999999999997765666664  


Q ss_pred             -hcCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCC-chH-HHH
Q psy3081          77 -FLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE-DSL-LYN  153 (327)
Q Consensus        77 -~~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~-~~~-~~~  153 (327)
                       ..|+++..++++|.++++|||+++.++++|.+.    .+++.++++.+|+.+||..+++.+.+..+..+.+ ... .+.
T Consensus       103 ~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~----~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~  178 (380)
T PF00999_consen  103 FILGLSWAEALLLGAILSATSPAIVSPVLKELGL----LPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSLGQL  178 (380)
T ss_dssp             -----------TTHHHHTT--HHHHHHHH-HHHT-----SSTTHHHHTTTTTTTTTTTTTTT------------------
T ss_pred             ccchhhhHHHhhhHHhhhcccccchhhhhhhhhc----ccccccchhhhhchhhccchhhhhhhhhhhhcccccccccch
Confidence             578999999999999999999999999876543    3479999999999999999999999888766221 111 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccC
Q psy3081         154 IVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQG  233 (327)
Q Consensus       154 ~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~  233 (327)
                      ...+...+..+.+.|...+|+.++..|+.++ .++.+...+++..+..+..+|.+  |.|+.++++++|+.+++..    
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~a~~~--g~s~~l~af~~Gl~~~~~~----  251 (380)
T PF00999_consen  179 LLSFLWIILIGIVIGLLFGWLLRRLIRRASP-SSEIFILLVLALILLLYGLAEIL--GLSGILGAFIAGLILSNSP----  251 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcchhhhhhhheeeecccchHHHHhhhhccc-cchhhHHHHHHHHhhhccccccc--cccccceeeeeehcccccc----
Confidence            3334555566666666667776666665421 23455666677788888999987  7789999999999988321    


Q ss_pred             CCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHh
Q psy3081         234 WNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELD--PQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVA  310 (327)
Q Consensus       234 ~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~--~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~  310 (327)
                         .++++++++++++ .++.|+||+.+|+++|.+.+.  .+.+...+.+.+..+++|.+++++..+..+.++||+..++
T Consensus       252 ---~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  328 (380)
T PF00999_consen  252 ---FAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIG  328 (380)
T ss_dssp             --------------------------------------------------------------------------HHHHTT
T ss_pred             ---ccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHH
Confidence               3445777888998 799999999999999998873  5556666666777779999999999999999999999999


Q ss_pred             hccccchhhhhhcc
Q psy3081         311 FSWMAKASVQLFLY  324 (327)
Q Consensus       311 ~~~~pr~~v~~al~  324 (327)
                      .++.|||+++.+++
T Consensus       329 ~~~~~~g~~~l~la  342 (380)
T PF00999_consen  329 LGMLPRGEVSLALA  342 (380)
T ss_dssp             TTSS--HHHHHHHH
T ss_pred             HhhcCccHHHHHHH
Confidence            99999999998876

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=100.00  E-value=1.6e-31  Score=261.51  Aligned_cols=307  Identities=16%  Similarity=0.188  Sum_probs=231.4

Q ss_pred             hhhhhhhheecccccc-----ccc-cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           4 HLFSLFGAFIGGNSEM-----VLD-EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         4 ~~~ll~GillGp~~~~-----~~~-~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      .+.++.|+++|+....     ..+ +.+.+-.+.+..++|++|+++|.+.++|+++++..++..+++++++.++...++.
T Consensus        39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~  118 (559)
T TIGR00840        39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI  118 (559)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999985322     111 3457777899999999999999999999999999999999999998888877754


Q ss_pred             --------cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC--C
Q psy3081          78 --------LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS--E  147 (327)
Q Consensus        78 --------~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~--~  147 (327)
                              .++||..|+++|+++++|||+++.+++++.     +.|+++.+++.+||.+||+++++++.+..++...  +
T Consensus       119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~-----~v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~  193 (559)
T TIGR00840       119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEY-----HVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADE  193 (559)
T ss_pred             HhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhc-----CCCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCC
Confidence                    256899999999999999999999987654     3567999999999999999999999988887642  1


Q ss_pred             chHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy3081         148 DSLL----YNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAF  223 (327)
Q Consensus       148 ~~~~----~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~  223 (327)
                      ....    ..+..+....++|+++|.++|++..++.|+.+.. +..+..+++..++++|..+|.+  |.||++|++++|+
T Consensus       194 ~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~-~~~e~~l~l~~~yl~Y~lAE~l--~~SGiLAvv~aGl  270 (559)
T TIGR00840       194 PVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI-RQIEPLFVFLISYLSYLFAETL--HLSGILALIFCGI  270 (559)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHH
Confidence            1111    1223344455668889988888887777766532 3456777788899999999987  8999999999999


Q ss_pred             HHhhhhcccCCCCCCchHHhHH----HHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--
Q psy3081         224 VSSYSWSKQGWNIEDNPVATAF----EIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV--  297 (327)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~--  297 (327)
                      ++++..++ +   .+++..+..    +.+..+.+.+.|+++|+++....... .+...+..++..++.|+++++..+.  
T Consensus       271 ~~~~y~~~-n---~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~  345 (559)
T TIGR00840       271 TMKKYVEA-N---MSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWIT  345 (559)
T ss_pred             HHHhhhcc-c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99875421 1   122222222    33445789999999999874332212 2334444555667999999988753  


Q ss_pred             ----CCCCChhhHHHHhhccc-cchhhhhhccC
Q psy3081         298 ----GSSLNLKEKLFVAFSWM-AKASVQLFLYL  325 (327)
Q Consensus       298 ----~~~~~~~e~~~~~~~~~-pr~~v~~al~~  325 (327)
                          ..+.++||+.++  +|. +||.|+.|+|.
T Consensus       346 ~~~~~~~~~~~e~~il--~w~GlRGaVa~aLAl  376 (559)
T TIGR00840       346 NEFRPVEIPYKDQLVI--FYAGLRGAVAFALAL  376 (559)
T ss_pred             HHhccCCCChhhhhhe--eeeccccHHHHHHHH
Confidence                346899999999  554 59999988863

This model is specific for the eukaryotic members members of this family.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=4.3e-31  Score=261.37  Aligned_cols=307  Identities=14%  Similarity=0.057  Sum_probs=220.0

Q ss_pred             chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      +..|+++|+++||++++..+   ..+.++++|++++||.+|+|+|++++||.++.....+..+++.+.. .+....+.++
T Consensus        33 ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  111 (558)
T PRK10669         33 LVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATL-LGMALSAVLG  111 (558)
T ss_pred             HHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence            46799999999999988543   3569999999999999999999999999987766666667666654 4455567789


Q ss_pred             CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC---CchHH----H
Q psy3081          80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS---EDSLL----Y  152 (327)
Q Consensus        80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~---~~~~~----~  152 (327)
                      +++..++++|++++.||++++.+.++|.+..    +++.+++.++.+.+||..+++++.++..+...   +....    .
T Consensus       112 ~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l----~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~  187 (558)
T PRK10669        112 WSLMTGIVFGLCLSTASTVVLLRALEERQLI----DSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAV  187 (558)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHH
Confidence            9999999999999999999999998876543    46899999999999999999888877655431   11111    1


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc-cchhHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHhhhh
Q psy3081         153 NIV-LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFV-VPLRIIMLLGGGLIVIF-ASEHLGLGGAGPLGVIASAFVSSYSW  229 (327)
Q Consensus       153 ~~~-~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~-~ae~~g~~~s~~la~~i~g~~~~~~~  229 (327)
                      .+. .....+.......++..+..+|+.|+..+.. ++.....++..++.+.. .+|.+  +.|..+|+|++|.++++. 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~~~l--Gls~~lGAflaGl~l~~~-  264 (558)
T PRK10669        188 DLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGAVELF--DVSFALGAFFAGMVLNES-  264 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHhCC-
Confidence            111 1111111111122233344455544433211 22233333444444443 35777  557999999999988641 


Q ss_pred             cccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHH
Q psy3081         230 SKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFV  309 (327)
Q Consensus       230 ~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~  309 (327)
                            +..+++++...++.+++.|+||+.+|+++|+..+.. .+...+.+++..+++|.++++..++..|+++||++..
T Consensus       265 ------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~-~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~  337 (558)
T PRK10669        265 ------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQ-QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTI  337 (558)
T ss_pred             ------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence                  134455555566778899999999999999987632 2334445566678999999999999999999999999


Q ss_pred             hhccccchhhhhhcc
Q psy3081         310 AFSWMAKASVQLFLY  324 (327)
Q Consensus       310 ~~~~~pr~~v~~al~  324 (327)
                      |+++.+||+.+..++
T Consensus       338 gl~l~~~Gef~lii~  352 (558)
T PRK10669        338 AASLAQIGEFAFILA  352 (558)
T ss_pred             HHHHhcccchHHHHH
Confidence            999999999886544

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=99.98  E-value=1.9e-30  Score=234.90  Aligned_cols=250  Identities=18%  Similarity=0.153  Sum_probs=192.9

Q ss_pred             chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      ...|+++|+++||+.+|..+   ..+.++++++.+++|.+|+|+|++++||++|+...++..++.++.+..+...++.++
T Consensus        19 ~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (273)
T TIGR00932        19 VLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLG   98 (273)
T ss_pred             HHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            46799999999999888443   356899999999999999999999999999999999999999996666666677899


Q ss_pred             CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHH-HH
Q psy3081          80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVL-GP  158 (327)
Q Consensus        80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~-~~  158 (327)
                      +++..++++|+++++||++++.++++|++..    +++.++++++++.+||..+++.+.+......+++........ ..
T Consensus        99 ~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~----~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~  174 (273)
T TIGR00932        99 LALGAAVVIGIILALSSTAVVVQVLKERGLL----KTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLL  174 (273)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence            9999999999999999999999999887643    368999999999999999999999888766532211112111 22


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC
Q psy3081         159 SSLIIGLAFGIIWGSLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE  237 (327)
Q Consensus       159 ~~i~~g~~~g~~~g~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~  237 (327)
                      ..+....+.+.+.+|..+|..|+.+++ +.+.....++...+..+..+|.+  |.|+++|++++|+++++..       .
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~--g~s~~lgaf~aGl~~~~~~-------~  245 (273)
T TIGR00932       175 KVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLL--GLSMALGAFLAGVVLSESE-------Y  245 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHcCCc-------h
Confidence            223333344455556666655543321 12344555566677778889988  6679999999999988521       2


Q ss_pred             CchHHhHHHHHHHHHHHHHHHHhccccc
Q psy3081         238 DNPVATAFEIFWMIFEPILFGLTGTQFK  265 (327)
Q Consensus       238 ~~~l~~~~~~~~~~~~plfF~~~G~~i~  265 (327)
                      +++++++++++.+++.|+||+++|+++|
T Consensus       246 ~~~l~~~l~~~~~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       246 RHKLESDLEPIGGVLLPLFFISVGMSVD  273 (273)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence            3567788888889999999999999876

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.8e-30  Score=235.21  Aligned_cols=307  Identities=21%  Similarity=0.266  Sum_probs=253.5

Q ss_pred             chhhhhhhheecccccc--ccccH---HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           3 KHLFSLFGAFIGGNSEM--VLDEF---SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~--~~~~~---~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      +.+|+..|++.|-.+.+  .++.+   ..+.+++++.++|..|+..+++.+|...++++.++..+++++..+.+..++|.
T Consensus        34 LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l  113 (574)
T COG3263          34 LLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL  113 (574)
T ss_pred             HHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999887  34444   37889999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCC-ch-HHHHHH
Q psy3081          78 LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE-DS-LLYNIV  155 (327)
Q Consensus        78 ~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~-~~-~~~~~~  155 (327)
                      ++.+|.+++++|+++.+||.+.+.+.+.+     .+.++|++.+++.||.=||.+++.+--.+..+...+ .+ ++...+
T Consensus       114 l~l~wle~~LiGAiVgSTDAAAVF~lL~~-----~nl~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll  188 (574)
T COG3263         114 LNLDWLEGLLIGAIVGSTDAAAVFSLLGG-----KNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLL  188 (574)
T ss_pred             hccHHHHHHHHHHhhccccHHHHHHHHcc-----CChhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHH
Confidence            99999999999999999999999988743     235569999999999999999987755555554433 32 233345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081         156 LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN  235 (327)
Q Consensus       156 ~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~  235 (327)
                      .+..+...|.++|...||+..+..+|.+ .++.....++++.+++.+..++.+  ++||+++++++|+..||.--     
T Consensus       189 ~f~~q~glG~l~G~~gg~l~~~~Inr~n-Ld~GL~pil~la~~Ll~fs~t~ai--GGsG~LaVYl~Gll~GN~~i-----  260 (574)
T COG3263         189 GFLQQFGLGLLLGLGGGKLLLQLINRIN-LDSGLYPILALAGGLLIFSLTGAI--GGSGILAVYLAGLLLGNRPI-----  260 (574)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHhCCCcc-----
Confidence            5788999999999999999888888875 334566777788888999999998  78999999999999998311     


Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081         236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMA  315 (327)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~p  315 (327)
                      +.++.+.+.++.+..+.+...|...|+.++++++........++.+...++.|++.+|++....++++||+.++  +|.+
T Consensus       261 ~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fv--SWvG  338 (574)
T COG3263         261 RARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFV--SWVG  338 (574)
T ss_pred             hhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchhee--ehhh
Confidence            13455656667787889999999999999999884433333444555668999999999999999999999999  8886


Q ss_pred             -chhhhhhcc
Q psy3081         316 -KASVQLFLY  324 (327)
Q Consensus       316 -r~~v~~al~  324 (327)
                       ||-|+.-+|
T Consensus       339 LRGAv~IilA  348 (574)
T COG3263         339 LRGAVPIILA  348 (574)
T ss_pred             cccchhhhHh
Confidence             888886665

>KOG1965|consensus

Probab=99.91  E-value=2.4e-23  Score=197.72  Aligned_cols=291  Identities=17%  Similarity=0.184  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh------cCCcHHHHHHHHhHhhccchhh
Q psy3081          26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF------LNLPWIWAFLTGSIFAAVSPAV   99 (327)
Q Consensus        26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~alllg~~ls~Ts~~v   99 (327)
                      .+-.+-+..+.|..|++++.+.++||..++...+..++.+++.+.+...+++      .++++.+++.+|+++|+|||+.
T Consensus       100 ~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVt  179 (575)
T KOG1965|consen  100 LFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVT  179 (575)
T ss_pred             HHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchH
Confidence            6778889999999999999999999999999999999999988777776665      3678999999999999999999


Q ss_pred             hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHH--H-HHH----HHHHHHHHHHHHHHHHH
Q psy3081         100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLL--Y-NIV----LGPSSLIIGLAFGIIWG  172 (327)
Q Consensus       100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~--~-~~~----~~~~~i~~g~~~g~~~g  172 (327)
                      ++++++|++.     ++++..++.|||++||+++++++..+......+.+..  . .+.    .+..+...|+.+|++.+
T Consensus       180 vLaIfnel~v-----d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA  254 (575)
T KOG1965|consen  180 VLAIFNELGV-----DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISA  254 (575)
T ss_pred             HHHHHHHhCC-----CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988654     3588899999999999999999999887766544322  1 122    24445556666666666


Q ss_pred             HHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCc-hHHhHHHHHHHH
Q psy3081         173 SLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDN-PVATAFEIFWMI  251 (327)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~  251 (327)
                      ++.++..-| +  ....+..+.+.+++..|+.||..  |.||+++++.+|+..+.+-. .+...+++ ...+.++.+..+
T Consensus       255 ~~lK~~~l~-~--~~~lE~al~ll~sY~sY~lAE~~--~lSGIvtVlFcGI~msHYt~-~NlS~~Sqit~kh~f~~lsfl  328 (575)
T KOG1965|consen  255 LVLKFLYLR-R--TPSLESALMLLMSYLSYLLAEGC--GLSGIVTVLFCGIVMSHYTY-HNLSGESQITTKHFFRTLSFL  328 (575)
T ss_pred             HHHHHHHhc-C--CcHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH
Confidence            666655443 1  23456777788899999999987  77999999999988875432 22111222 233345666678


Q ss_pred             HHHHHHHHhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CChhhHHHHhhccccchhhh
Q psy3081         252 FEPILFGLTGT-QFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSS----------LNLKEKLFVAFSWMAKASVQ  320 (327)
Q Consensus       252 ~~plfF~~~G~-~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~----------~~~~e~~~~~~~~~pr~~v~  320 (327)
                      .+.+.|.++|+ .++.+.+.....+......++..++|.+-++......+          .|.|+...+++...=||-++
T Consensus       329 AEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs  408 (575)
T KOG1965|consen  329 AETFIFIYLGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVS  408 (575)
T ss_pred             HHHHHHHHHhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHH
Confidence            99999999995 46666664443345666677778999999998865443          34455566655544599999


Q ss_pred             hhccCCC
Q psy3081         321 LFLYLGK  327 (327)
Q Consensus       321 ~al~~~~  327 (327)
                      .|+|.++
T Consensus       409 ~ALa~~~  415 (575)
T KOG1965|consen  409 FALALGD  415 (575)
T ss_pred             HHHHhhh
Confidence            9998763

>KOG4505|consensus

Probab=99.90  E-value=5.6e-23  Score=181.75  Aligned_cols=304  Identities=15%  Similarity=0.157  Sum_probs=216.9

Q ss_pred             hhhhhheeccccccccccH---------HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy3081           6 FSLFGAFIGGNSEMVLDEF---------SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY   76 (327)
Q Consensus         6 ~ll~GillGp~~~~~~~~~---------~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~   76 (327)
                      -.+.|+++||+.++.+++.         .-++.+-++.-.|..+.|++.+.+.+||+.+..+-+..+....+..+.+.|.
T Consensus        44 a~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~  123 (467)
T KOG4505|consen   44 AVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYA  123 (467)
T ss_pred             hhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999855422         2677888999999999999999999999999887666666665555556665


Q ss_pred             hc-CCcHHHHHHHHhHhhccchhhhHHHHHHhh-hcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch----H
Q psy3081          77 FL-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLR-SKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS----L  150 (327)
Q Consensus        77 ~~-~~~~~~alllg~~ls~Ts~~v~~~~l~~l~-~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~----~  150 (327)
                      +. +++...++.+++++++|||....++..+-+ .|+  +|.|+++++.+||..||.+++..+-....+......    -
T Consensus       124 l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akr--vPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~r  201 (467)
T KOG4505|consen  124 LIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKR--VPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGR  201 (467)
T ss_pred             HhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhh--ChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCC
Confidence            55 899999999999999999988777765322 232  688999999999999999999887766665554322    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc-chhH--HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhh
Q psy3081         151 LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVV-PLRI--IMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSY  227 (327)
Q Consensus       151 ~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~  227 (327)
                      -|.....+++...|.++|.+.|++.|...|..++++. +.+.  ..-+.+++.|..+.+.+  +++..+-.+.+|..++.
T Consensus       202 dwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtii--GvddLl~sFfAGi~Fsw  279 (467)
T KOG4505|consen  202 DWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTII--GVDDLLVSFFAGIVFSW  279 (467)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhee--chhHHHHHHHhhhhcch
Confidence            2344557788889999999999988877664432221 1222  22234567777778877  56788888888877652


Q ss_pred             hhcccCCCCCCchH-HhHHHHHH-HHHHHHHHHHhcccccccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHh--C
Q psy3081         228 SWSKQGWNIEDNPV-ATAFEIFW-MIFEPILFGLTGTQFKLSELDPQ-----IVSIAAIIVIGGVVTRILITVLVAV--G  298 (327)
Q Consensus       228 ~~~~~~~~~~~~~l-~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~~-----~~~~~~~~~~~~~i~r~~~~~l~~~--~  298 (327)
                          ++|  ..++. +.+.+.+. .++...||.+.|..++++..+..     .|-..++-+...++-|+..+++.--  .
T Consensus       280 ----d~w--Fsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iP  353 (467)
T KOG4505|consen  280 ----DEW--FSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIP  353 (467)
T ss_pred             ----hHH--hhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCc
Confidence                222  11111 23444444 36888999999999999987542     3334444455556677777766532  2


Q ss_pred             CCCChhhHHHHhhccccchhhhh
Q psy3081         299 SSLNLKEKLFVAFSWMAKASVQL  321 (327)
Q Consensus       299 ~~~~~~e~~~~~~~~~pr~~v~~  321 (327)
                      .-.+|||++++  |+.++-+|.|
T Consensus       354 dikswkEALFv--GhFGPIGVgA  374 (467)
T KOG4505|consen  354 DIKSWKEALFV--GHFGPIGVGA  374 (467)
T ss_pred             chhhHHHHHHh--ccCCCccHHH
Confidence            23699999999  8998877765

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.1e-19  Score=159.19  Aligned_cols=304  Identities=14%  Similarity=0.101  Sum_probs=203.8

Q ss_pred             chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      +..|+++|++.||+.+|...   -.+.++|+|++++||-.|++++.+++...+.-..--++.+.... ...+....+..|
T Consensus        33 LVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~a-t~lg~gL~~~lg  111 (408)
T COG4651          33 LVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALA-TLLGMGLSSLLG  111 (408)
T ss_pred             hHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHH-HHHHhHHHHHcC
Confidence            45799999999999988332   34589999999999999999999998877543332233332222 223334456789


Q ss_pred             CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC---CchH----HH
Q psy3081          80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS---EDSL----LY  152 (327)
Q Consensus        80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~---~~~~----~~  152 (327)
                      +++...+++|.++|..|+.+..+.++|   |+. .+++=+++.++.-.++|...++.+..+-++++.   +...    .+
T Consensus       112 ws~~~glvfGlaLS~aSTVvllraLqE---r~l-idt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~  187 (408)
T COG4651         112 WSFGTGIVFGLALSVASTVVLLRALEE---RQL-IDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLV  187 (408)
T ss_pred             CCcccceeeeehhhhHHHHHHHHHHHH---hcc-ccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHH
Confidence            999999999999999998877766654   432 345668899999999999998877766555441   1111    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCCCc-cchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhc
Q psy3081         153 NIVLGPSSLIIGLAFGIIWGS-LAKVVPEKGDPFV-VPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWS  230 (327)
Q Consensus       153 ~~~~~~~~i~~g~~~g~~~g~-l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~  230 (327)
                      .+.....+....+.++.+.|. +..|+.++....- .+.-...++++++...+++..+ ++.|.-+|++++|+++...  
T Consensus       188 ~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga~~L-fgvsfaLGAffaGMvL~es--  264 (408)
T COG4651         188 DLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAEL-FGVSFALGAFFAGMVLAES--  264 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhcccee-eccchhHHHHHHHHHhcch--
Confidence            222122233333444444443 3445544443210 1222333444555555544443 4778999999999888632  


Q ss_pred             ccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHh
Q psy3081         231 KQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVA  310 (327)
Q Consensus       231 ~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~  310 (327)
                           +.+++..+..-++.+.|..+||+.+|+..|+..+..+ ....+....+.+.+|-...+...+..+.+.|.++.++
T Consensus       265 -----elshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~-pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis  338 (408)
T COG4651         265 -----ELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQ-PLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTIS  338 (408)
T ss_pred             -----hhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcc-hHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHH
Confidence                 1234444444467789999999999999999887333 3455556666789999999999999999999999888


Q ss_pred             hccccchhhh
Q psy3081         311 FSWMAKASVQ  320 (327)
Q Consensus       311 ~~~~pr~~v~  320 (327)
                      .+...-||..
T Consensus       339 ~SLaqigEFs  348 (408)
T COG4651         339 ASLAQIGEFS  348 (408)
T ss_pred             HHHHhhhhHH
Confidence            7766666654

>KOG1650|consensus

Probab=99.83  E-value=8.3e-20  Score=184.61  Aligned_cols=306  Identities=14%  Similarity=0.113  Sum_probs=218.5

Q ss_pred             hhhhhhhheeccccccc--------cc-----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHH
Q psy3081           4 HLFSLFGAFIGGNSEMV--------LD-----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV   70 (327)
Q Consensus         4 ~~~ll~GillGp~~~~~--------~~-----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~   70 (327)
                      ...+++|+++||+.++.        ++     ..+.++.+|..+++|..|+|+|.+.+||+.++...++..++++|+...
T Consensus        51 ~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g  130 (769)
T KOG1650|consen   51 ISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLG  130 (769)
T ss_pred             HHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhh
Confidence            46789999999998771        11     345889999999999999999999999999999999999999986543


Q ss_pred             HHHHHHhcC-----C-c----HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHH
Q psy3081          71 VIATHYFLN-----L-P----WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIV  140 (327)
Q Consensus        71 ~~~~~~~~~-----~-~----~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~  140 (327)
                      ........+     . +    ..+=.....+.+.|+.++...++.|+|..+    +++|++.++++.+||..+|.++...
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~----se~Grla~saa~v~dv~~~~ll~~~  206 (769)
T KOG1650|consen  131 FGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN----SELGRLALSAAVVNDVAGWILLALA  206 (769)
T ss_pred             hhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh----chhhhhhhhhhhhhhHHHHHHHHHH
Confidence            333333211     1 1    114467778999999999999999998765    7999999999999999999888777


Q ss_pred             HHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--ccchhHHHHHHHHHHHHHHHHhhcCCCChHHH
Q psy3081         141 HSFMFSEDS-LLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF--VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLG  217 (327)
Q Consensus       141 ~~~~~~~~~-~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la  217 (327)
                      ....+.+.. ...........+...+..-.+.-....|+.||..+.  ..+.....++...+.+....+.++ +..+..|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~-~i~~~~G  285 (769)
T KOG1650|consen  207 LAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIG-GIHSIFG  285 (769)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhc-cccccch
Confidence            766654432 211222211111111111112345566666664321  123334455555666666677775 1234445


Q ss_pred             HHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3081         218 VIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVA  296 (327)
Q Consensus       218 ~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~  296 (327)
                      +    +..|...|+++  +....+.++++.+. .++.|+||...|.+.|+..+..  +......+.....+|++++...+
T Consensus       286 a----f~~Gl~iP~~~--p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~s  357 (769)
T KOG1650|consen  286 A----FILGLAIPHGP--PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTS  357 (769)
T ss_pred             h----heEEEecCCCC--chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4    45555555543  35567888888775 6999999999999999998844  45555667777899999999999


Q ss_pred             hCCCCChhhHHHHhhccccchhhhhh
Q psy3081         297 VGSSLNLKEKLFVAFSWMAKASVQLF  322 (327)
Q Consensus       297 ~~~~~~~~e~~~~~~~~~pr~~v~~a  322 (327)
                      ...+.++||++.+|..|..||.++..
T Consensus       358 l~~k~p~~~~l~l~~lm~~kgl~el~  383 (769)
T KOG1650|consen  358 LYCKLPLRDSLALGLLMSTKGLVELI  383 (769)
T ss_pred             HHhcCchhHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999998864

>KOG1966|consensus

Probab=99.77  E-value=3.3e-19  Score=169.02  Aligned_cols=308  Identities=17%  Similarity=0.205  Sum_probs=224.3

Q ss_pred             hhhhhhheecccccc--ccc----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH--
Q psy3081           5 LFSLFGAFIGGNSEM--VLD----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY--   76 (327)
Q Consensus         5 ~~ll~GillGp~~~~--~~~----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--   76 (327)
                      +.++.|+++|-...+  ..+    +.+.+--.-+..+++.+|+-++-+.+..|..+++..+.++.+..++..+...+.  
T Consensus        73 lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~  152 (670)
T KOG1966|consen   73 LLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAIS  152 (670)
T ss_pred             HHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888875433  111    223566677899999999999999999999999999999888876554433222  


Q ss_pred             ---hcC--CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchH-
Q psy3081          77 ---FLN--LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSL-  150 (327)
Q Consensus        77 ---~~~--~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~-  150 (327)
                         +++  .+...-++.|+..|+.||+.+.++..|+.     +++-+--++.|||.+||.+.++++....+...-++.. 
T Consensus       153 ~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-----VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~  227 (670)
T KOG1966|consen  153 LSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-----VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNL  227 (670)
T ss_pred             HhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-----cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccce
Confidence               345  34788999999999999999999987754     3346667889999999999999999988876542211 


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy3081         151 -----LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVS  225 (327)
Q Consensus       151 -----~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~  225 (327)
                           ......+..-.++|.++|+++|++.....|..++ ..-.+..+++.+++++|..+|..  |.|+++|..++|..+
T Consensus       228 ~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~-vrviePvfif~~pYlaYL~aEm~--hlSgIlAii~CG~~m  304 (670)
T KOG1966|consen  228 TTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH-VRVLEPVFIFLLPYLAYLTAEMF--HLSGILAIIFCGLCM  304 (670)
T ss_pred             eEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc-eeeecchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence                 1223344444577888898888877666665543 23456778888999999999987  889999999999998


Q ss_pred             hhhhcccCCCCCCchHHhHHHH-HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Q psy3081         226 SYSWSKQGWNIEDNPVATAFEI-FWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS-----  299 (327)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~-----  299 (327)
                      ....+ .+.+++...-.+.+-+ .....+++.|++.|.+.--+...++ +.+.++-++...+.|.+++...++..     
T Consensus       305 ~~Yv~-~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd-~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~  382 (670)
T KOG1966|consen  305 KKYVE-ANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD-FAFICLTLVFCLIYRAIGVVVLTWFLNKFRM  382 (670)
T ss_pred             HHHHh-cccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee-hhhhhhHHHHHHHHHHHHhhhhhhhhhhhhe
Confidence            87764 3322222222233322 3346799999999998765554443 45666777778899999988877553     


Q ss_pred             -CCChhhHHHHhhccccchhhhhhc
Q psy3081         300 -SLNLKEKLFVAFSWMAKASVQLFL  323 (327)
Q Consensus       300 -~~~~~e~~~~~~~~~pr~~v~~al  323 (327)
                       +++.+|...++.|.+ ||-++-+|
T Consensus       383 ~k~~~~DQfimsyGGL-RGAiaF~L  406 (670)
T KOG1966|consen  383 VKLEFVDQFIMSYGGL-RGAIAFGL  406 (670)
T ss_pred             eeccccceeeeecCCc-chhhheeE
Confidence             568899999988766 77666544

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.53  E-value=4.5e-12  Score=119.05  Aligned_cols=254  Identities=13%  Similarity=0.071  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHhccCCChH-------HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPP-------ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~-------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|.+|+|++.+       +.||...+ ..-++.++++|..     .|+.++..-..+.--=++-++||.
T Consensus        64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n~~~~~~~~GW~Ip~ATDI  137 (423)
T PRK14853         64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVNLAGGGALRGWAIPTATDI  137 (423)
T ss_pred             HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHhCCchhhhhhhhhhhhhHH
Confidence            4788889999999999999654       33333322 2345567776642     234444322222222246789999


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +.++.++..+..+   .|++++..+++.+++||+.++++.+++.    +++.....+.   .  ..   .....-+++++
T Consensus       138 AFalgvLallG~r---vp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~---~--a~---~~~~~l~~l~~  202 (423)
T PRK14853        138 AFALAVLAVIGTH---LPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALL---L--AL---VPLALFWLLVQ  202 (423)
T ss_pred             HHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHH---H--HH---HHHHHHHHHHH
Confidence            9999998776543   5678999999999999999999988766    2222211111   0  00   11112233332


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC-----CCCchHHhHHHHHH-HH
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN-----IEDNPVATAFEIFW-MI  251 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~  251 (327)
                      .  +.+    +...-.+  ..+.+++..+..|+|  +.+|+++.|+.+-..-++++.+     +..+++++++++.. .+
T Consensus       203 ~--~V~----~~~~Y~i--lg~~lW~~~~~sGiH--atiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~  272 (423)
T PRK14853        203 K--RVR----KWWLLLP--LGVATWILVHESGVH--ATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGV  272 (423)
T ss_pred             c--CCc----hhhHHHH--HHHHHHHHHHHhCCC--HHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence            1  111    1111122  234556667777776  7888777777764311100000     01245667777776 58


Q ss_pred             HHHHH-HHHhcccccc-ccc-chhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         252 FEPIL-FGLTGTQFKL-SEL-DPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       252 ~~plf-F~~~G~~i~~-~~l-~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                      +.|+| |...|.++|. +.+ +...-.....+++..+++|++|++..++.          .+.+|++-.-+
T Consensus       273 ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv  343 (423)
T PRK14853        273 AVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV  343 (423)
T ss_pred             HHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence            89999 9999999986 434 11111245566777889999998887532          35678875554

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.27  E-value=3.1e-10  Score=104.85  Aligned_cols=252  Identities=14%  Similarity=0.118  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-+....+   +..   .-++.++++|..     .|..++.+-.. ..-| ++=.+||.
T Consensus        54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~-~~~GW~IP~ATDi  127 (373)
T TIGR00773        54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPI-TREGWAIPAATDI  127 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCc-ccCccccccHHHH
Confidence            47888899999999999999887654332   221   224445555532     23344331100 0111 34567888


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-+..++.-+.   .+.|.+++..+++-+++||+.+++..+++.+    ++.....+       ..+. .....-++++|
T Consensus       128 AFalgvlallG---~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L-------~~a~-~~~~~l~~~~~  192 (373)
T TIGR00773       128 AFALGVMALLG---KRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAAL-------LVAA-VAIAVLAVLNR  192 (373)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHH-------HHHH-HHHHHHHHHHH
Confidence            87777765443   3478888999999999999999988876552    22111111       1111 11111223333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHH
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPIL  256 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plf  256 (327)
                      .    +.+   ......+...++.+.. +..|+|  +.+|+++.|+.+....  +..++..+++++.+++.. .++.|+|
T Consensus       193 ~----~v~---~~~~y~~lgvllW~~~-~~sGVH--atiaGvllGl~iP~~~--~~~~~pl~rleh~L~p~v~~lilPlF  260 (373)
T TIGR00773       193 C----GVR---RLGPYMLVGVILWFAV-LKSGVH--ATLAGVIIGFFIPLKG--KKGESPLKRLEHVLHPWVAYLILPLF  260 (373)
T ss_pred             c----CCc---hhhHHHHHHHHHHHHH-HHcCCc--HHHHHHHHeeeecccc--cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2    111   1122222223333333 566776  6667666665554311  110001234555556555 4688999


Q ss_pred             -HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         257 -FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       257 -F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                       |...|.++|...++....+....+++..+++|+++++..++.          .+.+|+|-.-+
T Consensus       261 AFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv  324 (373)
T TIGR00773       261 AFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAV  324 (373)
T ss_pred             HHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence             999999998765533222335566777889999999998632          35678875544

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=98.64  E-value=1.4e-06  Score=81.04  Aligned_cols=252  Identities=17%  Similarity=0.136  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhhh---hh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWST---VL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-.....+.   ..   .-++.++++|+.     .|+.++.+-. ...-| .+=.+||.
T Consensus        61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~-~~~~GWgIPmATDI  134 (389)
T PRK09560         61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNP-ETLRGWAIPAATDI  134 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCC-cccCccccccHHHH
Confidence            478888999999999999998876543322   21   223445555532     2333432100 00111 24568898


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-++.++.-+.   .+.|.+++..+++-+++||+.+++..+++.+    ++.....+       ..+. .+...-++++|
T Consensus       135 AFAlgvL~llG---~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L-------~~a~-~~~~~l~~ln~  199 (389)
T PRK09560        135 AFALGVLALLG---KRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPAL-------ALAA-IAIAVLFLLNR  199 (389)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHH-------HHHH-HHHHHHHHHHH
Confidence            88888776433   3378888999999999999999988876552    22111111       1111 11111223333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHHH-HHH
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWMI-FEP  254 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~p  254 (327)
                      .  +.+     ......+....+.+. -..-|.|  +-+|.++.|++.-... +++ +++  .+++++.+++...+ ..|
T Consensus       200 ~--~v~-----~~~~Y~~~G~~lW~~-~l~SGvH--aTiAGV~la~~iP~~~-~~~-~~~~pl~rleh~L~p~v~~~IlP  267 (389)
T PRK09560        200 L--GVT-----KLTPYLIVGAILWFA-VLKSGVH--ATLAGVVLAFCIPLKG-KKG-DEESPLHHLEHALHPWVAFAILP  267 (389)
T ss_pred             c--CCc-----cchHHHHHHHHHHHH-HHHcccc--HHHHHHHHHHhccccC-CCC-CCCCHHHHHHHHhhhhhhhhhHH
Confidence            2  111     111222222233333 3334666  5666666665554311 111 001  13455666666554 466


Q ss_pred             HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                      +| |.-.|..++-..+....-.....+.+..+++|++|++..++.          .+.+|++-.-+
T Consensus       268 lFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv  333 (389)
T PRK09560        268 LFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGV  333 (389)
T ss_pred             HHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            65 555666664323321111234456666789999999988632          35678875544

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=98.59  E-value=1.5e-07  Score=87.14  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=120.2

Q ss_pred             cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHH--HHHHHhcCCcHHHHHHHH-hHhhccchhh
Q psy3081          23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVV--IATHYFLNLPWIWAFLTG-SIFAAVSPAV   99 (327)
Q Consensus        23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~alllg-~~ls~Ts~~v   99 (327)
                      ..+.+.|.-+.+..|..|+|++.+-.....++.- -+..+.+.....+.  ...|..++.+-.. ..-| ++=.+||.+-
T Consensus        55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r-~a~lP~~AAlGGm~vPalIyl~~n~~~~~-~~~GW~IP~ATDIAF  132 (378)
T PF06965_consen   55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPR-KAALPIIAALGGMLVPALIYLAFNAGGPE-AAHGWAIPMATDIAF  132 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTT-TSHHHHHHHHHHTTTTHHHHGGG--SSTT-HHHHTSSSS---HHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChh-hhhhHHHHHHhcchHHHHHHheeecCCCC-cCceEEecccccHHH
Confidence            3457889999999999999999887654333321 12223332221111  1334445432111 1222 4567899988


Q ss_pred             hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3081         100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVP  179 (327)
Q Consensus       100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~  179 (327)
                      +..++.-+.   .+.|++++..+++-+.+||+.+++..+++.+    ++.....+       ..+.. ....-+.++|. 
T Consensus       133 Algvlal~G---~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L-------~~a~~-~~~~l~~l~r~-  196 (378)
T PF06965_consen  133 ALGVLALLG---KRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWL-------LLAAA-ALLLLFVLNRL-  196 (378)
T ss_dssp             HHHHHHSS----SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHH-------HHHHH-HHHHHHHHHHT-
T ss_pred             HHHHHHHhc---CCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHH-------HHHHH-HHHHHHHHHHC-
Confidence            877775333   3468889999999999999999998887653    22111111       11111 11112233331 


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC---CCC---chHHhHHHHHHH-HH
Q psy3081         180 EKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN---IED---NPVATAFEIFWM-IF  252 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~---~~~---~~l~~~~~~~~~-~~  252 (327)
                       +.+     ......+. +...++.-..-|.|  +-    ++|.+.+...|.++..   +.+   +++++.+++..+ +.
T Consensus       197 -~v~-----~~~~Y~~~-G~~lW~~~l~SGvH--aT----iAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~I  263 (378)
T PF06965_consen  197 -GVR-----SLWPYLLL-GILLWYAVLKSGVH--AT----IAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVI  263 (378)
T ss_dssp             -T--------THHHHHH-HHHHHHHTTTSHHH--HH----HHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTH
T ss_pred             -CCc-----eehHHHHH-HHHHHHHHHHcCCC--HH----HHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhh
Confidence             111     11122222 22333322222333  33    4455555555432211   111   234455555544 44


Q ss_pred             HHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCChhhHHHH
Q psy3081         253 EPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS----------SLNLKEKLFV  309 (327)
Q Consensus       253 ~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~----------~~~~~e~~~~  309 (327)
                      .|+| |.-.|.+++-..++...-.....+.+..+++|++|++..++..          +.+|++-.-+
T Consensus       264 lPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv  331 (378)
T PF06965_consen  264 LPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGV  331 (378)
T ss_dssp             HHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTH
T ss_pred             HHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            6655 6667777666554322212233455566799999999886432          4567765444

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.35  E-value=2.6e-05  Score=72.24  Aligned_cols=250  Identities=16%  Similarity=0.189  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhh---hhhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLW---STVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~---~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-.....   |+..   .-++.++++|..     .|..++.+  ....-| ++=.+||.
T Consensus        58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n~~--~~~~~GW~IP~ATDI  130 (383)
T PRK14854         58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSINHD--IKVINGWAIPSATDI  130 (383)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhccC--CcccCccccccHHHH
Confidence            4788889999999999999887655322   2222   224445555542     23344332  111112 34668898


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-+..++.-+.   .+.|..++-.+++-+.+||+.+++..+++.+    ++.....+       ..+.. ....-+.++|
T Consensus       131 AFAlgvLallG---~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~A~~-~~~~l~~~nr  195 (383)
T PRK14854        131 AFTLGILALLG---TRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLSLLSL-------SLGTL-FILAMIICNR  195 (383)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCccHHHH-------HHHHH-HHHHHHHHHH
Confidence            88777765443   3368889999999999999999988876552    22211111       11111 1111122333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHH-HHHH
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWM-IFEP  254 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~-~~~p  254 (327)
                      .. +.++     .....+. ++..++.-..-|.|  +-+|.++.|+..-.    +..+.+  .+++++.+++... +..|
T Consensus       196 ~~-~v~~-----~~~Y~~~-G~~lW~~~l~SGvH--aTiAGV~~a~~iP~----~~~~~~~pl~rleh~L~p~v~~~IlP  262 (383)
T PRK14854        196 IF-KINR-----SSVYVVL-GFFAWFCTIKSGVH--ATLAGFTTALCIPF----RENDKDSPANFMEDSLHPWIIYFILP  262 (383)
T ss_pred             hc-CCce-----ehHHHHH-HHHHHHHHHHhccc--HHHHHHHHHHhccc----CCCCCCCHHHHHHHHhhchHHHhhHH
Confidence            21 1111     1112222 23333333344667  56665555555433    211111  2345566666654 4566


Q ss_pred             HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                      +| |.-.|.+++-...+...-.....+.+..+++|.+|++..++.          .+.+|||-.-+
T Consensus       263 lFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv  328 (383)
T PRK14854        263 VFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGI  328 (383)
T ss_pred             HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            55 555666663222211111234455666789999999988532          35678875544

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.33  E-value=3.2e-05  Score=69.52  Aligned_cols=252  Identities=16%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhh
Q psy3081          26 SYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAV   99 (327)
Q Consensus        26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v   99 (327)
                      .+-|--+....+..|+|++.+.+..+.+   +..   .-+..+++.|.     ..|..++.+-..+.===++=++||.+-
T Consensus        65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n~~~p~~~~GWaIP~ATDiAF  139 (390)
T COG3004          65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALNAGDPATLEGWAIPMATDIAF  139 (390)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheeecCChhhhcCcCcccHHHHHH
Confidence            5566677788889999999888765433   222   12333444442     224444433221111113567888888


Q ss_pred             hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3081         100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVP  179 (327)
Q Consensus       100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~  179 (327)
                      +..++.-+..   .+|..+.-.+++-+.+||.-+++..++..+   ++-+.. .+      ...++.+.++  ..++|  
T Consensus       140 AlGvlaLLG~---rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~-al------~~a~~~i~vL--~~lN~--  202 (390)
T COG3004         140 ALGVLALLGS---RVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMA-AL------GIAALAIAVL--AVLNR--  202 (390)
T ss_pred             HHHHHHHhcC---CCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHH-HH------HHHHHHHHHH--HHHHH--
Confidence            7777765443   378888899999999999999998876553   222211 10      1111111111  11222  


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHH-H
Q psy3081         180 EKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPIL-F  257 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plf-F  257 (327)
                        .+-.  ....-++.. ..+...+-+ -|.|  +-++.++.|++.-..-  ++.+..-+++++.+++-. .+..|+| |
T Consensus       203 --~~v~--~l~~Y~~~g-viLW~~vlk-SGVH--ATLAGVi~~f~IPl~~--k~~~spl~~leh~L~pwvaf~IlPlFaF  272 (390)
T COG3004         203 --LGVR--RLSPYLLVG-VILWIAVLK-SGVH--ATLAGVILAFFIPLKT--KEGESPLERLEHALHPWVAFFILPLFAF  272 (390)
T ss_pred             --hCch--hhhHHHHHH-HHHHHHHHH-hhhH--HHHHHHHHHeeeeccC--CCCCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence              1110  011112222 222222222 2455  5566556665554321  111112344555555543 3556765 5


Q ss_pred             HHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         258 GLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       258 ~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                      .-.|.+++-.+.+...-...+.+....+++|.++++..++.          .+.||++-.-+
T Consensus       273 aNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v  334 (390)
T COG3004         273 ANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGV  334 (390)
T ss_pred             ccCCcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHH
Confidence            66666655333332222344556667789999999887632          35688875443

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.31  E-value=2.7e-05  Score=73.34  Aligned_cols=249  Identities=17%  Similarity=0.098  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-+....+   +..   .-++.++++|.     ..|+.++.+-..  .-| ++=.+||.
T Consensus        65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPA-----lIy~~~n~~~~~--~~GWgIPmATDI  137 (423)
T PRK14855         65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPA-----ALYTALNAGGPG--ASGWGVPMATDI  137 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHH-----HHHheeecCCCc--cCccccccHHHH
Confidence            47788889999999999999887654332   221   12344555553     223444332111  112 35678998


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-+..++.-+.   .+.|+.++..+++-+++||+.+++..+++.+   ++-+. ..+       ..+.. ....-++++|
T Consensus       138 AFAlgvLallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~-~~L-------~~a~~-~~~~l~~ln~  202 (423)
T PRK14855        138 AFALGVLALLG---SRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNL-LAL-------LLAAL-TWALALLAGR  202 (423)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCH-HHH-------HHHHH-HHHHHHHHHH
Confidence            88888775543   3367788899999999999999988776552   22211 111       11111 1111223333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhh-hcccCC----------------------
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYS-WSKQGW----------------------  234 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~-~~~~~~----------------------  234 (327)
                      .  +.+     ......+....+.+. -..-|.|  +-+|.++.|++.-.. .++.+.                      
T Consensus       203 ~--~v~-----~~~~Y~~~G~~lW~~-~l~SGVH--aTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (423)
T PRK14855        203 L--GVT-----SLKIYAVLGALLWFF-VLKSGLH--PTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD  272 (423)
T ss_pred             c--CCc-----cccHHHHHHHHHHHH-HHHhccc--HHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence            2  111     111222222333333 3344667  667766677666431 010000                      


Q ss_pred             -C----C-C--CchHHhHHHHHHH-HHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC------
Q psy3081         235 -N----I-E--DNPVATAFEIFWM-IFEPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG------  298 (327)
Q Consensus       235 -~----~-~--~~~l~~~~~~~~~-~~~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~------  298 (327)
                       +    + +  .+++++.+++... +..|+| |.-.|..++-+...    .....+.+..+++|.+|++..++.      
T Consensus       273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~  348 (423)
T PRK14855        273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGL  348 (423)
T ss_pred             hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC----cHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Confidence             0    0 0  1234444555444 356655 55566666432221    234455666789999999988632      


Q ss_pred             ----CCCChhhHHHH
Q psy3081         299 ----SSLNLKEKLFV  309 (327)
Q Consensus       299 ----~~~~~~e~~~~  309 (327)
                          .+.+|++-.-+
T Consensus       349 a~lP~g~~w~~l~gv  363 (423)
T PRK14855        349 ASLPRRVNWLHMLGA  363 (423)
T ss_pred             CCCCCCCCHHHHHHH
Confidence                35778875544

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=98.28  E-value=4.5e-05  Score=70.96  Aligned_cols=250  Identities=15%  Similarity=0.143  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-+....+   +..   .-++.+++.|+.     .|+.++.+-. ...-| ++=.+||.
T Consensus        61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~-~~~~GWaIP~ATDI  134 (388)
T PRK09561         61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADP-VTREGWAIPAATDI  134 (388)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCC-cccCccccccHHHH
Confidence            46788889999999999999887654332   221   224445555532     2334433110 00111 34567898


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-+..++.-+.   .+.|.+++..+++-+.+||+.+++..+++.+    ++.....+       ..+.. ....-++++|
T Consensus       135 AFalgvlallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~a~~-~~~~l~~ln~  199 (388)
T PRK09561        135 AFALGVLALLG---SRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLSMVSL-------GVAAV-AIAVLAVLNL  199 (388)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCccHHHH-------HHHHH-HHHHHHHHHH
Confidence            88887774433   3368888999999999999999988876552    22211111       11111 1111122333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHHH-HHH
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWMI-FEP  254 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~p  254 (327)
                      .  +.+     ......+. +...++.-..-|.|  +-+|.++.|+..-.    +..+.+  -+++++.+++...+ ..|
T Consensus       200 ~--~v~-----~~~~Y~~~-G~~lW~~~l~SGvH--aTiAGV~la~~iP~----~~~~~~~pl~rleh~L~p~v~~~IlP  265 (388)
T PRK09561        200 C--GVR-----RTSVYILV-GVVLWVAVLKSGVH--ATLAGVIVGFFIPL----KEKHGRSPAERLEHGLHPWVAFLILP  265 (388)
T ss_pred             c--CCc-----cchHHHHH-HHHHHHHHHHcccc--HHHHHHHHHhhccc----cCCCCCCHHHHHHHHhhhhhhheeHH
Confidence            2  111     11122222 23333333344667  55665555554432    210111  23456666666554 566


Q ss_pred             HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081         255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV  309 (327)
Q Consensus       255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~  309 (327)
                      +| |.-.|..++-..++...-.....+.+..+++|.+|++..++.          .+.+|++-.-+
T Consensus       266 lFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv  331 (388)
T PRK09561        266 LFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAV  331 (388)
T ss_pred             HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            54 555566653222221111233455666789999999988532          35678885544

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.27  E-value=5e-05  Score=71.83  Aligned_cols=252  Identities=13%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhhh---hh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWST---VL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP   97 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~   97 (327)
                      +.+.|.-+.+..|..|+|++.+-+....+.   ..   .-++.++++|.     ..|+.++.+-..  .-| .+=.+||.
T Consensus        70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPA-----lIY~~~n~~~~~--~~GWgIPmATDI  142 (438)
T PRK14856         70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPG-----LIYFFLNADTPS--QHGFGIPMATDI  142 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHH-----HHHhheecCCCc--cCccccccHHHH
Confidence            478889999999999999988766543322   21   22444555553     224444332111  112 34668898


Q ss_pred             hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081          98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus        98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~  177 (327)
                      +-+..++.-+.   .+.|..++..+++-+++||+.+++..+++.+    ++.....+       ..+. .....-++++|
T Consensus       143 AFAlgvLallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~a~-~~~~~l~~ln~  207 (438)
T PRK14856        143 AFALGVIMLLG---KRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWL-------LGAL-GVVLVLAVLNR  207 (438)
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHH-------HHHH-HHHHHHHHHHH
Confidence            88887774433   3367888899999999999999998876552    22111111       1111 11112223333


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcc--cCC--------------------C
Q psy3081         178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSK--QGW--------------------N  235 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~--~~~--------------------~  235 (327)
                      .  +.+     ......+. ++..++.-..-|.|  +-+|.++.|++.-...++  +..                    +
T Consensus       208 ~--~v~-----~~~~Y~~~-G~~lW~~~l~SGVH--aTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (438)
T PRK14856        208 L--NVR-----SLIPYLLL-GVLLWFCVHQSGIH--ATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE  277 (438)
T ss_pred             c--CCc-----cccHHHHH-HHHHHHHHHHccCc--HHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence            2  111     11122222 23333333344666  667777777666432111  000                    0


Q ss_pred             C-------------C---CchHHhHHHHHHH-HHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081         236 I-------------E---DNPVATAFEIFWM-IFEPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV  297 (327)
Q Consensus       236 ~-------------~---~~~l~~~~~~~~~-~~~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~  297 (327)
                      +             .   -+++++.+++... +..|+| |.-.|..++.+.. ...-.....+.+..+++|.+|++..++
T Consensus       278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~-~~~~pv~lGI~~GLvvGK~lGI~~~s~  356 (438)
T PRK14856        278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN-LEVDKVLLGVILGLCLGKPLGIFLITF  356 (438)
T ss_pred             hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh-hccCcHHHHHHHHHHhcchHHHHHHHH
Confidence            0             0   0223334444444 456665 6667777764422 111124455566678999999998863


Q ss_pred             C----------CCCChhhHHHH
Q psy3081         298 G----------SSLNLKEKLFV  309 (327)
Q Consensus       298 ~----------~~~~~~e~~~~  309 (327)
                      .          .+.+|++-.-+
T Consensus       357 lavkl~~a~lP~g~~w~~l~gv  378 (438)
T PRK14856        357 ISEKLKITARPKGISWWHILGA  378 (438)
T ss_pred             HHHHhCCCCCCCCCCHHHHHHH
Confidence            2          35678886554

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=97.57  E-value=0.076  Score=50.18  Aligned_cols=102  Identities=12%  Similarity=0.057  Sum_probs=56.9

Q ss_pred             cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHH-H
Q psy3081         209 GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVV-T  287 (327)
Q Consensus       209 g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i-~  287 (327)
                      +++...++.+++.|.+++|..++.+..+.+++.   ++.+.+...-+|=...=+++++..+. +...+.++++....+ .
T Consensus       244 ~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~---i~~I~~~sL~~fl~~almsl~l~~l~-~~a~Plliil~~q~i~~  319 (368)
T PF03616_consen  244 GLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKT---IDRISGISLDLFLAMALMSLKLWVLA-DYALPLLIILAVQTILM  319 (368)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHhCcccCCHHH---HHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHH
Confidence            567788999999999999988765432223223   34444443333323333456666663 333444443333333 3


Q ss_pred             HHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081         288 RILITVLVAVGSSLNLKEKLFVAFSWMA  315 (327)
Q Consensus       288 r~~~~~l~~~~~~~~~~e~~~~~~~~~p  315 (327)
                      =....+...+..+.|+ |+..++.|+.+
T Consensus       320 ~~f~~fv~fr~~gkdy-daavm~~G~~G  346 (368)
T PF03616_consen  320 VLFAYFVTFRVMGKDY-DAAVMSAGFCG  346 (368)
T ss_pred             HHHHHHHhhhhhCCCh-hHHHHhhhhhc
Confidence            3444555667778887 55555444443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.19  E-value=0.22  Score=47.26  Aligned_cols=80  Identities=11%  Similarity=0.076  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhhhhcc
Q psy3081         245 FEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLY  324 (327)
Q Consensus       245 ~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~~al~  324 (327)
                      -+++..++.=+||..+|+..|++.+..  .+..++.....+..-.+..+...+..|.|++|....+-+-.+-.+-++++|
T Consensus       265 ~~~lg~~lly~ffa~IGa~a~i~~l~~--ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~AnIGGpaTA~a~A  342 (378)
T PF05684_consen  265 ASELGTFLLYLFFAVIGASADISELLD--APSLFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNANIGGPATAPAVA  342 (378)
T ss_pred             hHHHHHHHHHHHHHHHccccCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhcccCCcchHHHHH
Confidence            367778888899999999999998733  233334444556777788888889899999999999877775544455555


Q ss_pred             CC
Q psy3081         325 LG  326 (327)
Q Consensus       325 ~~  326 (327)
                      +.
T Consensus       343 ~a  344 (378)
T PF05684_consen  343 AA  344 (378)
T ss_pred             Hh
Confidence            43

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.12  E-value=0.078  Score=48.57  Aligned_cols=163  Identities=12%  Similarity=0.102  Sum_probs=98.9

Q ss_pred             hhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHHHHHHhcCCcH
Q psy3081           6 FSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVIATHYFLNLPW   82 (327)
Q Consensus         6 ~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~   82 (327)
                      ..+..-.++|...+.....+......+.++||.-|+.++.+++++..++.... +.+...++.   +.++.....+.  .
T Consensus        18 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~~--l   94 (319)
T COG0385          18 WVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLFP--L   94 (319)
T ss_pred             HHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHcC--C
Confidence            34455566676665555555566899999999999999999999866655432 223333332   22333333444  4


Q ss_pred             HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHH-HHHHHHH
Q psy3081          83 IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLY-NIVLGPS  159 (327)
Q Consensus        83 ~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~-~~~~~~~  159 (327)
                      ..-+..|.++..+.|+.+.+.......||     ++ ..-.+.+.++...+...-..+..+..+++.  +.+ .+..+..
T Consensus        95 ~~~l~~Gl~ll~~~Pggv~S~~~t~lAkG-----nV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~  168 (319)
T COG0385          95 PPELAVGLLLLGCCPGGVASNAMTYLAKG-----NV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILL  168 (319)
T ss_pred             CHHHHHhHHheeeCCCchhHHHHHHHhcC-----cH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            45567788888888877766554545565     43 344566778888887777766665444321  222 3444555


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3081         160 SLIIGLAFGIIWGSLAKV  177 (327)
Q Consensus       160 ~i~~g~~~g~~~g~l~~~  177 (327)
                      .+..-+.+|.+......+
T Consensus       169 ~vllP~~LG~~~r~~~~~  186 (319)
T COG0385         169 QVLLPFVLGQLLRPLLPK  186 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555556666555444333

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=97.05  E-value=0.31  Score=46.44  Aligned_cols=103  Identities=9%  Similarity=0.003  Sum_probs=63.6

Q ss_pred             cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH
Q psy3081         209 GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTR  288 (327)
Q Consensus       209 g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r  288 (327)
                      +.+...+..+++.|.+++|..++.+..+.   .++.++.+.+...-+|-...=+++++.++ .+.+.+.++++...++.-
T Consensus       242 ~~~lP~fv~am~~giiirni~~~~~~~~~---~~~~i~~I~~~sLdlfl~~AlmsL~L~~l-~~~a~Plliil~~q~i~~  317 (398)
T TIGR00210       242 ALMLPTFVWCLFVGVILRNPLSFKKFPWV---AERAVSVIGNVSLSLFLAIALMSLQLWEL-ADLAGPIALILLVQVMFM  317 (398)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999876542212   22344555555555555444456777777 344555555555555444


Q ss_pred             H-HHHHHHHhCCCCChhhHHHHhhccccc
Q psy3081         289 I-LITVLVAVGSSLNLKEKLFVAFSWMAK  316 (327)
Q Consensus       289 ~-~~~~l~~~~~~~~~~e~~~~~~~~~pr  316 (327)
                      . ...++..+..+.+ .|+..++-+..+.
T Consensus       318 ~l~~~fv~fr~mg~~-ydaaV~~ag~~G~  345 (398)
T TIGR00210       318 ALYAIFVTFRLMGKD-YDAAVLCAGHCGF  345 (398)
T ss_pred             HHHHHHHhHHhccch-HHHHHHhcccccc
Confidence            4 4445556667777 7777765555543

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=96.77  E-value=0.086  Score=44.81  Aligned_cols=141  Identities=15%  Similarity=0.158  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHHHHH-HhcCCcHHHHHHHHhHhhccchhhhH-HHH
Q psy3081          30 MALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVIATH-YFLNLPWIWAFLTGSIFAAVSPAVVV-PCL  104 (327)
Q Consensus        30 ~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~-~~~~~~~~~alllg~~ls~Ts~~v~~-~~l  104 (327)
                      +.+...||..|+++|++++++..|+.-.+. .+.+....   +.++... ..++.  ......|.++.+.+|.... +..
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~~~--~~~~~~Gl~l~~~~P~~~~s~~~   78 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLLPL--SPALALGLLLVAACPGGPASNVF   78 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHTT----HHHHHHHHHHHHS-B-THHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHhcCCcHHHHHHH
Confidence            467889999999999999998876654432 12222222   1222222 34444  3445666666666664433 333


Q ss_pred             HHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3081         105 FKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLY--NIVLGPSSLIIGLAFGIIWGSLAKVVPE  180 (327)
Q Consensus       105 ~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~--~~~~~~~~i~~g~~~g~~~g~l~~~~~~  180 (327)
                      .++ .+|     |. +...+...++...+.........+..++.....  .......+....+++-...|.+.|+..+
T Consensus        79 t~l-~~G-----d~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p  149 (187)
T PF01758_consen   79 TYL-AGG-----DV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLP  149 (187)
T ss_dssp             HHH-TT-------H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred             HHH-hCC-----Cc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence            332 333     33 356666778888888777777766554332111  1223333444444444556666665544

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00832 acr3 arsenical-resistance protein

Probab=96.41  E-value=0.75  Score=42.80  Aligned_cols=103  Identities=13%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHH-HHHHhcCCcHHHHHHHHhHhhccchhhhHHHHH
Q psy3081          30 MALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVI-ATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLF  105 (327)
Q Consensus        30 ~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~-~~~~~~~~~~~~alllg~~ls~Ts~~v~~~~l~  105 (327)
                      +.+.++||-.|+++++++++|..|+.-... .+......   +.++ +++.+++.+..  +..|.++.+..|..+.+..-
T Consensus        47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~-~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~  123 (328)
T TIGR00832        47 IGLILMMYPPLAKVDYSALGDVFKDPKGLI-LSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVW  123 (328)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHH
Confidence            456689999999999999998766654321 22222221   1222 33333455543  77888887777766555443


Q ss_pred             HhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHH
Q psy3081         106 KLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVH  141 (327)
Q Consensus       106 ~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~  141 (327)
                      ..-.||     ++. .-.....+|...+.+......
T Consensus       124 T~lAkG-----nva-lsv~lt~~stLl~~~~~P~l~  153 (328)
T TIGR00832       124 NQLAKG-----DPE-YTLVLVAVNSLFQVFLYAPLA  153 (328)
T ss_pred             HHHcCC-----CHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            333444     433 445555788888876665544

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=96.34  E-value=0.0078  Score=51.33  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             hhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCCh-----HHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081           5 LFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDP-----PALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN   79 (327)
Q Consensus         5 ~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~-----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (327)
                      ..+++|+++|-......+..+...+..+..++|..|.|+..     +++|+..++.+.+.+...+-+. ..+.+...+++
T Consensus         3 ~~li~Gi~lG~~~~~~~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSl-lgg~l~~~ll~   81 (191)
T PF03956_consen    3 IALILGILLGYFLRPPFSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSL-LGGLLASLLLG   81 (191)
T ss_pred             eeHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            46788999997765543444788999999999999998854     3566666788877776665554 45566667779


Q ss_pred             CcHHHHHHHHhHhh
Q psy3081          80 LPWIWAFLTGSIFA   93 (327)
Q Consensus        80 ~~~~~alllg~~ls   93 (327)
                      +|+.+++.+++-..
T Consensus        82 ~~~~~~lav~sG~G   95 (191)
T PF03956_consen   82 LSLKESLAVASGFG   95 (191)
T ss_pred             CCHHHHHHHHccCc
Confidence            99999998876544

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=95.91  E-value=0.81  Score=42.26  Aligned_cols=142  Identities=12%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHH---HHHHHHhcCCcHHHHHHHHhHhhccchhhhH
Q psy3081          25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV---VIATHYFLNLPWIWAFLTGSIFAAVSPAVVV  101 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~  101 (327)
                      |.....++..+.|..|+.+|.+++++..++.-.... ....++...   +.....+.+......+..|....+.-|.++.
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~  108 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVS  108 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhh
Confidence            467788899999999999999999986665433222 222332222   2222223321112336666555555554322


Q ss_pred             H-H-HHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC-Cc--hHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy3081         102 P-C-LFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS-ED--SLLYN-IVLGPSSLIIGLAFGIIWGSL  174 (327)
Q Consensus       102 ~-~-l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~-~~--~~~~~-~~~~~~~i~~g~~~g~~~g~l  174 (327)
                      + + +.+ ..+|     + ....+..+.++...++++......+..+ ++  .+..+ +.+....+..-.++|.+..+.
T Consensus       109 S~v~~T~-~AgG-----N-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~  180 (313)
T PF13593_consen  109 SSVVLTR-LAGG-----N-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRW  180 (313)
T ss_pred             HHHHHHH-HcCC-----C-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2 222 2232     2 2456778888899998888877765552 22  12222 334555555555555554433

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.89  E-value=1.4  Score=40.49  Aligned_cols=127  Identities=15%  Similarity=0.171  Sum_probs=75.5

Q ss_pred             hhhhhhhheeccccccccccH--------HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy3081           4 HLFSLFGAFIGGNSEMVLDEF--------SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH   75 (327)
Q Consensus         4 ~~~ll~GillGp~~~~~~~~~--------~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   75 (327)
                      ..-++.|+++++...+..+..        +.+-+.|+++    .|.+++++++.+.+.+........+..+......+..
T Consensus        30 ~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~  105 (305)
T PF03601_consen   30 LIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGR  105 (305)
T ss_pred             HHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence            345788999996222222211        2455555554    5999999999999988777766666666544444443


Q ss_pred             HhcCCcHHHHHHHHh---HhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHH
Q psy3081          76 YFLNLPWIWAFLTGS---IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHS  142 (327)
Q Consensus        76 ~~~~~~~~~alllg~---~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~  142 (327)
                      -.+++|...+.++|+   ++.+++...+.|+++   .+    ++++. ...+.-.+=+..+++++..+..
T Consensus       106 r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~---a~----~~~~a-~ava~V~lfg~vam~~~P~l~~  167 (305)
T PF03601_consen  106 RLFGLDRKLAILIAAGTSICGASAIAATAPVIK---AK----EEDVA-YAVATVFLFGTVAMFLYPLLGH  167 (305)
T ss_pred             HHhCCCHHHHHHHHhhcccchHHHHHHHccccc---CC----CCcee-eeehHHHHHHHHHHHHHHHHHH
Confidence            678999999999985   555555544555542   22    12322 2233333444555555555444

; GO: 0016021 integral to membrane

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=95.10  E-value=1.3  Score=40.79  Aligned_cols=132  Identities=15%  Similarity=0.273  Sum_probs=79.8

Q ss_pred             hhhhhhheeccccccc--------cccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhh---hhchhHHHHHHHHHHHH
Q psy3081           5 LFSLFGAFIGGNSEMV--------LDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVL---KLGLVPWAVEAISVVIA   73 (327)
Q Consensus         5 ~~ll~GillGp~~~~~--------~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~~~   73 (327)
                      +-++.|+.+|-+.++.        ....+.--.+++.+.|+--=.++|++++++..++.=   ..-....++.=+....+
T Consensus        22 l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~l  101 (342)
T COG0798          22 LAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFAL  101 (342)
T ss_pred             HHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999766551        123346667888888888888999999987555422   22222333322233344


Q ss_pred             HHHhcCCcHHHHHHHHhHhhccchhhhH-HHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHc
Q psy3081          74 THYFLNLPWIWAFLTGSIFAAVSPAVVV-PCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMF  145 (327)
Q Consensus        74 ~~~~~~~~~~~alllg~~ls~Ts~~v~~-~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~  145 (327)
                      ++..++.  ...+..|.++-.-+|-+.+ .+..++. ++      =.+.....-.+||...+++++......-
T Consensus       102 a~~fl~~--~pey~~GlILlglApC~aMVivw~~La-~G------d~~~tlv~Va~n~l~qiv~y~~~~~~~l  165 (342)
T COG0798         102 AWFFLPD--EPEYRAGLILLGLAPCIAMVIVWSGLA-KG------DRELTLVLVAFNSLLQIVLYAPLGKFFL  165 (342)
T ss_pred             HHHHhCC--CHHHHHHHHHHHhhhhHHHHHHHHhhc-cC------cHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444432  2267777777766665443 2333443 22      1245566778999999999987665443

>TIGR00841 bass bile acid transporter

Probab=94.98  E-value=2.8  Score=38.18  Aligned_cols=103  Identities=15%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhccCCChHHHHhhhhhh--hhhchh--HHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhhhHH-HH
Q psy3081          30 MALVVILTRAGLDLDPPALRRLWSTV--LKLGLV--PWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVP-CL  104 (327)
Q Consensus        30 ~gl~lllF~~Gle~~~~~l~~~~~~~--~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~~-~l  104 (327)
                      ..+.+.||..|+.++.+++++..++.  ...+..  -.+.|..  ++.....++.+  .....|..+.+..|..+.. ++
T Consensus        12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll--a~~l~~~~~l~--~~~~~glvL~~~~P~~~~s~v~   87 (286)
T TIGR00841        12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT--GFLLAKVFKLP--PELAVGVLIVGCCPGGTASNVF   87 (286)
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH--HHHHHHHhCCC--HHHHHHHHheeeCCCchHHHHH
Confidence            34889999999999999999877643  222222  2234432  23333456655  3445666666666654443 33


Q ss_pred             HHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy3081         105 FKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSF  143 (327)
Q Consensus       105 ~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~  143 (327)
                      .+. .++   +.+   ...+...++...+++...+...+
T Consensus        88 t~~-~~g---n~~---la~~~~~~stlls~vt~Pl~l~~  119 (286)
T TIGR00841        88 TYL-LKG---DMA---LSISMTTCSTLLALGMMPLLLYI  119 (286)
T ss_pred             HHH-hCC---CHh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence            332 222   223   33344445666665555554433

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG2431 Predicted membrane protein [Function unknown]

Probab=94.36  E-value=0.1  Score=46.35  Aligned_cols=89  Identities=17%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             chhhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCC---hH--HHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           3 KHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLD---PP--ALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~---~~--~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      ...+.+.|+++|-......+..+...|..+.+++|.+|.++.   ..  +.+=| |+......... ++-...+..+.++
T Consensus       109 ~~~~vl~g~~~G~l~~~~~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i~i-lssliGG~iaa~~  186 (297)
T COG2431         109 LLGVVLLGLALGLLTGSFLNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFITL-LSSLIGGLIAAFL  186 (297)
T ss_pred             HHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHHHH-HHHHHHHHHHHHH
Confidence            356778888888776665556778899999999999999888   22  22222 44444444444 3445567777888


Q ss_pred             cCCcHHHHHHHHhHhh
Q psy3081          78 LNLPWIWAFLTGSIFA   93 (327)
Q Consensus        78 ~~~~~~~alllg~~ls   93 (327)
                      +++|+.+++.+++-..
T Consensus       187 l~lpl~~~lAmasG~G  202 (297)
T COG2431         187 LDLPLTTGLAMASGFG  202 (297)
T ss_pred             HhccHHHHHHHHhccc
Confidence            8999999887765443

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.11  E-value=0.27  Score=44.90  Aligned_cols=84  Identities=12%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             hhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHH
Q psy3081           5 LFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW   84 (327)
Q Consensus         5 ~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (327)
                      +-++.|+++|....+..+..+.=..+++.+..|..|.++|++++.+.+.+-+.++...+..+........ -+++.+...
T Consensus       171 lpILiGmilGNld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rllg~~~~~  249 (312)
T PRK12460        171 LPLVLGMILGNLDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLVGGTGIA  249 (312)
T ss_pred             HHHHHHHHHhccchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHhCCChhH
Confidence            5677888888733221222221123478888999999999999999999988888877777655444444 456888888


Q ss_pred             HHHHH
Q psy3081          85 AFLTG   89 (327)
Q Consensus        85 alllg   89 (327)
                      +.++|
T Consensus       250 g~li~  254 (312)
T PRK12460        250 GAAAS  254 (312)
T ss_pred             HHHHH
Confidence            88877

>TIGR00698 conserved hypothetical integral membrane protein

Probab=94.00  E-value=5.3  Score=37.25  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=73.7

Q ss_pred             hhhhhhheeccccc-ccccc----H----HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy3081           5 LFSLFGAFIGGNSE-MVLDE----F----SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH   75 (327)
Q Consensus         5 ~~ll~GillGp~~~-~~~~~----~----~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   75 (327)
                      .=++.|+++|.... +..+.    .    +.+-+.++++    .|.+++++++.+.+.+.+......+..+.........
T Consensus        36 ~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~  111 (335)
T TIGR00698        36 LAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGS  111 (335)
T ss_pred             HHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888877431 11111    1    2445566554    5999999999999988876656555544443333443


Q ss_pred             HhcCCcHHHHHHHHh---HhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy3081          76 YFLNLPWIWAFLTGS---IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM  144 (327)
Q Consensus        76 ~~~~~~~~~alllg~---~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~  144 (327)
                      -.+++|...+.++|+   ++.+++...+.|+++   .+    +++. ....+.-.+=+..++.++..+....
T Consensus       112 k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~---A~----~~~~-a~ava~V~lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698       112 SRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK---AE----KEKV-SVAIAIVVIFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             HHhCCChhHHHHHHcchhHHHHHHHHHhccccC---CC----ccce-eeeehHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999984   555555555555542   12    1222 2223333344555566665555443

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=93.68  E-value=6.4  Score=37.15  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=63.1

Q ss_pred             HHHHHhh---cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH
Q psy3081         202 IFASEHL---GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAA  278 (327)
Q Consensus       202 ~~~ae~~---g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~  278 (327)
                      +.+.+.+   ++....+..+++.|.+.+|..++.++++   -.++..+.+.+....+|-.+.=+++.+.++.. .+...+
T Consensus       235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~---v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~  310 (404)
T COG0786         235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR---VFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLL  310 (404)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc---ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHH
Confidence            3444444   3456788999999999999987654221   12234566777777777666666777776632 333444


Q ss_pred             HHHHHHHHHHHH-HHHHHHhCCCCChhhHHHH
Q psy3081         279 IIVIGGVVTRIL-ITVLVAVGSSLNLKEKLFV  309 (327)
Q Consensus       279 ~~~~~~~i~r~~-~~~l~~~~~~~~~~e~~~~  309 (327)
                      +++.+-.+.-.. ..+...|..|.|+.++..+
T Consensus       311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~  342 (404)
T COG0786         311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVLA  342 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHh
Confidence            444444444333 3344457778888777764

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=93.67  E-value=1.2  Score=40.93  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHhh-hhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc
Q psy3081         194 LLGGGLIVIFASEH--LGLGGAGPLGVIASAFVSSY-SWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD  270 (327)
Q Consensus       194 ~l~~~~~~~~~ae~--~g~~~s~~la~~i~g~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~  270 (327)
                      +..++...+.+++.  ...+.++.+=+++.|+.++| .++.      .++.++-.+.-.+.+...==+..|.+++++++ 
T Consensus         6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~------~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i-   78 (305)
T PF03601_consen    6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGL------PARFKPGIKFSSKKLLRLGIVLLGFRLSFSDI-   78 (305)
T ss_pred             HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCC------cHHHHhHHHHHHHHHHHHHHHHHCccccHHHH-
Confidence            34445555555552  12356777777888888887 4432      12233223322234444444566999999987 


Q ss_pred             hhhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081         271 PQIVSIAAIIVIGGVV-TRILITVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       271 ~~~~~~~~~~~~~~~i-~r~~~~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      .+..+..+......+. .=..+.+++.+..|.|+|.+..++.|..
T Consensus        79 ~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~Gts  123 (305)
T PF03601_consen   79 LALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTS  123 (305)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence            3333434444333333 3344445555889999999999988765

; GO: 0016021 integral to membrane

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=93.07  E-value=0.55  Score=39.26  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             hhhhheecccccc-----ccccHHHHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhc
Q psy3081           7 SLFGAFIGGNSEM-----VLDEFSSYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFL   78 (327)
Q Consensus         7 ll~GillGp~~~~-----~~~~~~~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   78 (327)
                      +++|+++|-....     ..+..+.+.|+++.+.++..|++--++   .+||++.+...++..-..++........++++
T Consensus        30 L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~  109 (169)
T PF06826_consen   30 LFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF  109 (169)
T ss_pred             HHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5566666654321     123446899999999999999988765   45566666666677766677666666666688


Q ss_pred             CCcHHH
Q psy3081          79 NLPWIW   84 (327)
Q Consensus        79 ~~~~~~   84 (327)
                      ++|+..
T Consensus       110 ~l~~~~  115 (169)
T PF06826_consen  110 KLNPGI  115 (169)
T ss_pred             CCCHHH
Confidence            888654

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=92.32  E-value=1.1  Score=36.74  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             hhhhhhheecccccc-----c--cccHHHHHHHHHHHHHHHhccCCChHHHH---hhh-hhhhhhchhHHHHHHHHHHHH
Q psy3081           5 LFSLFGAFIGGNSEM-----V--LDEFSSYRKMALVVILTRAGLDLDPPALR---RLW-STVLKLGLVPWAVEAISVVIA   73 (327)
Q Consensus         5 ~~ll~GillGp~~~~-----~--~~~~~~l~~~gl~lllF~~Gle~~~~~l~---~~~-~~~~~l~~~~~~~~~~~~~~~   73 (327)
                      .-+++|+++|-....     .  .+..+.+.|+++.++++..|++--.+-+.   |+. .....++....+++.......
T Consensus        26 G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~  105 (154)
T TIGR01625        26 GVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVA  105 (154)
T ss_pred             HHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888765532     1  12345899999999999999998876544   433 122223333344454556667


Q ss_pred             HHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081          74 THYFLNLPWIWAFLTGSI-FAAVSPAV   99 (327)
Q Consensus        74 ~~~~~~~~~~~alllg~~-ls~Ts~~v   99 (327)
                      .++.+++|+..  ..|.+ =+-|+++.
T Consensus       106 ~~~~~~~~~~~--~~G~~aGa~T~tpa  130 (154)
T TIGR01625       106 LIKLLRINYAL--TAGMLAGATTNTPA  130 (154)
T ss_pred             HHHHhCCCHHH--HHHHHhccccChHH
Confidence            77788988753  34443 34445443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.01  E-value=2.1  Score=39.50  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHH
Q psy3081         211 GGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRIL  290 (327)
Q Consensus       211 ~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~  290 (327)
                      |.++..=+.+.|+++++..++      .++...-++.-.+.+..+==+..|.+++++++ .+.....+.+....+..-++
T Consensus        36 ~l~al~lAIllGi~l~~l~~~------~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i-~~~G~~~v~~~~~~l~~t~~  108 (334)
T COG2855          36 GLSALTLAILLGILLGILPQI------PAQTSAGITFSSKKLLRLGIVLLGFRLTLSDI-ADVGGSGVLIIAITLSSTFL  108 (334)
T ss_pred             CchHHHHHHHHHHHHhccccc------hhhhccchhhhHHHHHHHHHHHHcceeeHHHH-HHcCccHHHHHHHHHHHHHH
Confidence            444666667777777743321      11222222222233333333455999999988 33445556666666677777


Q ss_pred             HHHHHHhCCCCChhhHHHHhhccc
Q psy3081         291 ITVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       291 ~~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      .++...+..|+|+|++..++.|..
T Consensus       109 ~~~~lg~~lgld~~~a~Lia~Gss  132 (334)
T COG2855         109 FAYFLGKLLGLDKKLALLIAAGSS  132 (334)
T ss_pred             HHHHHHHHhCCCHHHHHHHHccch
Confidence            777777788999999999988755

>TIGR00698 conserved hypothetical integral membrane protein

Probab=90.31  E-value=5.4  Score=37.19  Aligned_cols=115  Identities=10%  Similarity=-0.029  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhhc---CCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccch
Q psy3081         195 LGGGLIVIFASEHLG---LGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDP  271 (327)
Q Consensus       195 l~~~~~~~~~ae~~g---~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~  271 (327)
                      ..++.....+++.-.   .+.|+.+=++..|+.++|....+.    +++...-.+-..+.+.-.==+..|.+++++++ .
T Consensus        11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~----~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i-~   85 (335)
T TIGR00698        11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQR----DEEKKRGVLFAKPFLLRIGITLYGFRLTFPYI-A   85 (335)
T ss_pred             HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccc----hhhccchHHHHHHHHHHHHHHHHCccccHHHH-H
Confidence            334445555554321   246677777788888888542111    11111111111111111112345999999988 4


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHhCCCCChhhHHHHhhccc
Q psy3081         272 QIVSIAAIIVIGGVVTRILI-TVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       272 ~~~~~~~~~~~~~~i~r~~~-~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      +..+..+......+..=+.. .+++.+..|.|++.+..++.|..
T Consensus        86 ~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~Gts  129 (335)
T TIGR00698        86 DVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSS  129 (335)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchh
Confidence            44455555444444444444 44555778999999999987654

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=90.18  E-value=15  Score=33.92  Aligned_cols=118  Identities=10%  Similarity=0.055  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc
Q psy3081         191 IIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD  270 (327)
Q Consensus       191 ~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~  270 (327)
                      ...+...+.....+++.++++.+.+++.++.+.........+      .+..+.+..   ..+-+.=..+|.+++.+.+.
T Consensus       157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~------~~~P~~l~~---~aqv~iG~~iG~~f~~~~l~  227 (318)
T PF05145_consen  157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS------FSLPPWLVN---AAQVLIGASIGSRFTRETLR  227 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC------CCCCHHHHH---HHHHHHHHHHHccccHHHHH
Confidence            344445666777888888888888899988887776542211      111121222   22333334568888887663


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhh
Q psy3081         271 --PQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ  320 (327)
Q Consensus       271 --~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~  320 (327)
                        .+.....+......+..=....++..+..+.|+.+.++.   +.|-|--|
T Consensus       228 ~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~e  276 (318)
T PF05145_consen  228 ELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAE  276 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHH
Confidence              234455555566666677777778888889999988876   56655444

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.89  E-value=6.1  Score=39.97  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             hhhhheecccccc--ccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHH
Q psy3081           7 SLFGAFIGGNSEM--VLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW   84 (327)
Q Consensus         7 ll~GillGp~~~~--~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (327)
                      .++|++++.+-..  ..+..+.+.++.+.++....|+++|++.+.+++.....+.+...+.-.. ..+.....+++++..
T Consensus       244 FlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~-~~~~~~~~~g~~~~~  322 (601)
T PRK03659        244 FIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGL-VLYLLARLYGLRSSE  322 (601)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHH
Confidence            4567777653211  1123446778889999999999999999988876555443333333333 334445578999999


Q ss_pred             HHHHHhHhhccch
Q psy3081          85 AFLTGSIFAAVSP   97 (327)
Q Consensus        85 alllg~~ls~Ts~   97 (327)
                      ++.+|..+++...
T Consensus       323 al~~g~~L~~~Ge  335 (601)
T PRK03659        323 RMQFAGVLSQGGE  335 (601)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988865

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.61  E-value=4.6  Score=41.04  Aligned_cols=116  Identities=11%  Similarity=0.039  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081         190 RIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL  269 (327)
Q Consensus       190 ~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l  269 (327)
                      +..+.+..+.+...+++.+  +.+.+++-+++|+++|-..-  ++  .++  .+.++.+..+-..++-+.+|+++|++.+
T Consensus         9 ~~~~~l~~a~i~~~l~~rl--~lp~vlgyilaGillGP~~l--g~--i~~--~~~i~~laelGvv~LlF~iGLEl~~~~l   80 (621)
T PRK03562          9 QALIYLGAAVLIVPIAVRL--GLGSVLGYLIAGCIIGPWGL--RL--VTD--VESILHFAEFGVVLMLFVIGLELDPQRL   80 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhCcccc--cC--CCC--HHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence            3445555666667777877  55689999999999884221  10  111  2235566677777888889999999977


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081         270 DPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       270 ~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      .. ..-.....-...++.=....+...+..+++|.+++++|.+..
T Consensus        81 ~~-~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la  124 (621)
T PRK03562         81 WK-LRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLA  124 (621)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            21 111111111111111112222333445789999988876543

>PRK03818 putative transporter; Validated

Probab=88.47  E-value=2.6  Score=42.09  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=51.2

Q ss_pred             hhhhhheecc----ccccccc-cHHHHHHHHHHHHHHHhccCCChHHH---HhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           6 FSLFGAFIGG----NSEMVLD-EFSSYRKMALVVILTRAGLDLDPPAL---RRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         6 ~ll~GillGp----~~~~~~~-~~~~l~~~gl~lllF~~Gle~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      -+++|+++|-    .+....+ ..+.+.++|+.+++|..|++.-++-+   ||++.+...++.+-.+.+.. .++..+++
T Consensus        36 ~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~~~  114 (552)
T PRK03818         36 VLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGL-VTAILHKL  114 (552)
T ss_pred             HHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3567787776    3322222 23469999999999999999988754   44444555555555555543 35566778


Q ss_pred             cCCcHHH
Q psy3081          78 LNLPWIW   84 (327)
Q Consensus        78 ~~~~~~~   84 (327)
                      +++|+..
T Consensus       115 ~~~~~~~  121 (552)
T PRK03818        115 FGIPLPV  121 (552)
T ss_pred             hCCCHHH
Confidence            8988653

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=88.47  E-value=1.6  Score=40.02  Aligned_cols=83  Identities=7%  Similarity=-0.098  Sum_probs=52.8

Q ss_pred             HHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081         218 VIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV  297 (327)
Q Consensus       218 ~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~  297 (327)
                      +++.|++.||..         ++..+.+++-.++..|++-+..|.++|++++ .+....++++-+..++.=....+...+
T Consensus       172 pILiGmilGNld---------~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I-~~~G~~GIlL~v~vv~~t~~~~~~i~r  241 (312)
T PRK12460        172 PLVLGMILGNLD---------PDMRKFLTKGGPLLIPFFAFALGAGINLSML-LQAGLAGILLGVLVTIVTGFFNIFADR  241 (312)
T ss_pred             HHHHHHHHhccc---------hhhHHHHhccceEeHHHHHHHhcCCeeHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666632         2233444444445889999999999999988 334445555544444555555555556


Q ss_pred             CCCCChhhHHHHh
Q psy3081         298 GSSLNLKEKLFVA  310 (327)
Q Consensus       298 ~~~~~~~e~~~~~  310 (327)
                      ..|.+.+....++
T Consensus       242 llg~~~~~g~li~  254 (312)
T PRK12460        242 LVGGTGIAGAAAS  254 (312)
T ss_pred             HhCCChhHHHHHH
Confidence            6688888888876

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=87.78  E-value=2.6  Score=42.23  Aligned_cols=82  Identities=15%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             hhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhh---hhhhhchhHHHHHHHHHHHHHHHhcCCcH
Q psy3081           6 FSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWS---TVLKLGLVPWAVEAISVVIATHYFLNLPW   82 (327)
Q Consensus         6 ~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (327)
                      =+++|+++|-.+..   ..+.+.++++.+++|..|++.-++-++.-+|   +...+++.-++.. ..+++...+++|+|.
T Consensus        41 vLfvgl~~G~~g~~---i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~  116 (562)
T TIGR03802        41 SLIVAVLIGQLGIQ---IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSG-LITVYALAKIFGLDK  116 (562)
T ss_pred             HHHHHHHHHhcCCC---CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence            35667777765442   3346889999999999999999876554443   4444444433333 445566677888875


Q ss_pred             HH--HHHHHhH
Q psy3081          83 IW--AFLTGSI   91 (327)
Q Consensus        83 ~~--alllg~~   91 (327)
                      ..  .++-|+.
T Consensus       117 ~~~~Gl~aGal  127 (562)
T TIGR03802       117 GTAAGLAAGGL  127 (562)
T ss_pred             HHHHHHHhchh
Confidence            43  3444443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=87.66  E-value=7.7  Score=38.83  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081          26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP   97 (327)
Q Consensus        26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~   97 (327)
                      .+.++.+.++....|+++|++.+.+++.....+.....+.-. ..+......+|+++..++.+|..+++-+.
T Consensus       276 ~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~-~~~~~~~~~~g~~~~~a~~~gl~l~~~Ge  346 (558)
T PRK10669        276 PLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKS-LAAFFLVRLFGHSRRTALTIAASLAQIGE  346 (558)
T ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCChhhHHHHHHHHhcccc
Confidence            456777888888999999999988765443332222222222 23344455679999999999999987665

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=86.03  E-value=5.9  Score=35.52  Aligned_cols=105  Identities=17%  Similarity=0.108  Sum_probs=61.2

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHH
Q psy3081         201 VIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAII  280 (327)
Q Consensus       201 ~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~  280 (327)
                      ...+++.+  +.+..++-+++|+.+|...-+.    .++  ++.++.+.++-..++....|.++|++.+.. .......+
T Consensus         7 ~~~l~~~l--~lP~~v~~il~GillGp~~lg~----i~~--~~~~~~l~~igl~~llF~~Gl~~d~~~l~~-~~~~~~~~   77 (273)
T TIGR00932         7 AVPLSRRL--GIPSVLGYLLAGVLIGPSGLGL----ISN--VEGVNHLAEFGVILLMFLIGLELDLERLWK-LRKAAFGV   77 (273)
T ss_pred             HHHHHHHh--CCCHHHHHHHHHHHhCcccccC----CCC--hHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHH
Confidence            34556666  5568888888898888532111    111  124566677777788889999999998732 22222222


Q ss_pred             HHHHHHHH-HHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081         281 VIGGVVTR-ILITVLVAVGSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       281 ~~~~~i~r-~~~~~l~~~~~~~~~~e~~~~~~~~~  314 (327)
                      ....++.= ....+...+..+.++.++..+|....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls  112 (273)
T TIGR00932        78 GVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILA  112 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            22222222 22223233445788899988877544

>PRK05326 potassium/proton antiporter; Reviewed

Probab=85.31  E-value=12  Score=37.55  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHH
Q psy3081         198 GLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIA  277 (327)
Q Consensus       198 ~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~  277 (327)
                      +..+..+++.+  +.+.+++-+..|+.+|...... .+ .+ + .+..+.+.++..+++....|.++|++.+.. .+...
T Consensus        18 ~~~~~~l~~r~--~~P~ll~~il~GillGp~~lg~-i~-~~-~-~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~-~~~~~   90 (562)
T PRK05326         18 SILASRLSSRL--GIPSLLLFLAIGMLAGEDGLGG-IQ-FD-N-YPLAYLVGNLALAVILFDGGLRTRWSSFRP-ALGPA   90 (562)
T ss_pred             HHHHHHHHHHc--CCcHHHHHHHHHHHhCccccCC-cc-cC-c-HHHHHHHHHHHHHHHHHcCccCCCHHHHHH-HHHHH
Confidence            33444455555  4456777777777777422110 00 11 1 123456677888888899999999998833 33444


Q ss_pred             HHHHHHHHHHHHHH-HHHHHhCCCCChhhHHHHhhcccc
Q psy3081         278 AIIVIGGVVTRILI-TVLVAVGSSLNLKEKLFVAFSWMA  315 (327)
Q Consensus       278 ~~~~~~~~i~r~~~-~~l~~~~~~~~~~e~~~~~~~~~p  315 (327)
                      ..+....++.=... .+...+..+++|.+++++|....+
T Consensus        91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~  129 (562)
T PRK05326         91 LSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGS  129 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhcc
Confidence            33333332222222 233344568899999999775543

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=85.13  E-value=7.7  Score=37.11  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhh-hhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081         191 IIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSY-SWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL  269 (327)
Q Consensus       191 ~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l  269 (327)
                      ....+..+.......+.+++  ++++|-+++|.++|. ....   ..++   ++.++.+.++=.-++...+|++.|++.+
T Consensus        11 ~~iiL~~a~i~~~l~~rl~l--p~vlg~llaGiilGp~~~~~---~~~~---~~~i~~laelGvi~LlF~~GLE~~~~~l   82 (397)
T COG0475          11 LLILLLVAVILGPLFKRLGL--PPVLGYLLAGIILGPWGLLL---IIES---SEIIELLAELGVVFLLFLIGLEFDLERL   82 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHhcCcccccc---cCCc---hHHHHHHHHHhHHHHHHHHHHCcCHHHH
Confidence            34444455555577788754  689999999999996 1110   0112   2334445555555667788999999988


Q ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHHh-CCCCChhhHHHHhhccc
Q psy3081         270 DPQIVSI-AAIIVIGGVVTRILITVLVAV-GSSLNLKEKLFVAFSWM  314 (327)
Q Consensus       270 ~~~~~~~-~~~~~~~~~i~r~~~~~l~~~-~~~~~~~e~~~~~~~~~  314 (327)
                      .. .... ........+..=+........ ..++++++++++|..+.
T Consensus        83 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~  128 (397)
T COG0475          83 KK-VGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA  128 (397)
T ss_pred             HH-hchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            32 2222 222222222222122211111 47899999999987654

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=84.84  E-value=34  Score=32.00  Aligned_cols=61  Identities=10%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy3081          27 YRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLT   88 (327)
Q Consensus        27 l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alll   88 (327)
                      +.++-...+.--.=+.+|.+.++|...+.....+.+.+... ..+.....++|+++..+++.
T Consensus        26 Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~~~~   86 (347)
T TIGR00783        26 FLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAV-IVGILVGTLFGLGFDHSLMY   86 (347)
T ss_pred             hHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHhHhhhe
Confidence            34455555555556799999999999988877666666554 45556677899998887754

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=84.38  E-value=6.1  Score=36.46  Aligned_cols=95  Identities=16%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             hhhheecccccc----ccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHH-HHHHHHHHHHHHHhcCCcH
Q psy3081           8 LFGAFIGGNSEM----VLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPW-AVEAISVVIATHYFLNLPW   82 (327)
Q Consensus         8 l~GillGp~~~~----~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~   82 (327)
                      +.|+++...+..    ..+..+.+++....+-|+..|..++.++.+++++........-. +.|..  .......++.+.
T Consensus       189 i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i--~~~~~~~~~l~~  266 (321)
T TIGR00946       189 LLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAV--MAGISKLIGLRG  266 (321)
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHH--HHHHHHHhCCCh
Confidence            445555443332    12345689999999999999999999888877666654444322 33332  223334566553


Q ss_pred             HHHHHHHhHhhccchhhhHHHHH
Q psy3081          83 IWAFLTGSIFAAVSPAVVVPCLF  105 (327)
Q Consensus        83 ~~alllg~~ls~Ts~~v~~~~l~  105 (327)
                      .. .-...+.++.-+++...++.
T Consensus       267 ~~-~~~~vl~aa~P~a~~~~i~A  288 (321)
T TIGR00946       267 LE-LSVAILQAALPGGAVAAVLA  288 (321)
T ss_pred             HH-HHHHHHHHcCChhhHHHHHH
Confidence            22 22223344444444444443

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=84.37  E-value=21  Score=29.21  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc--hhhH
Q psy3081         197 GGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD--PQIV  274 (327)
Q Consensus       197 ~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~--~~~~  274 (327)
                      .+.....+.+.++++....+|.++.+.........      +.+..+....   ..+.+.=..+|.+++.+.+.  .+.+
T Consensus         6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~------~~~~P~~~~~---~~qviiG~~iG~~f~~~~l~~~~~~~   76 (156)
T TIGR03082         6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGL------EITLPPWLLA---LAQVVIGILIGSRFTREVLAELKRLW   76 (156)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCc------cCCCCHHHHH---HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            34445555677777777778888888776543211      1112222222   23333334568998887763  2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhh
Q psy3081         275 SIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ  320 (327)
Q Consensus       275 ~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~  320 (327)
                      ...+...+..+..=....++..+..++|+.++++.   ..|-|--|
T Consensus        77 ~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~  119 (156)
T TIGR03082        77 PAALLSTVLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASE  119 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHH
Confidence            44555555666677777788888899999999755   56655433

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=82.13  E-value=17  Score=37.85  Aligned_cols=71  Identities=11%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCChhhHHHHhhccccchhh
Q psy3081         248 FWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV-G-SSLNLKEKLFVAFSWMAKASV  319 (327)
Q Consensus       248 ~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~-~-~~~~~~e~~~~~~~~~pr~~v  319 (327)
                      +..+..++--+..|.+++...+.. .|.....++...+..-.+.+.+..+ . .+++|.+++.+|-...|-..|
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lrr-~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYMLK-HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            566677777778899999998833 3333333333333333333333332 3 689999999999877775433

This model is specific for the fungal members of this family.

>PRK04972 putative transporter; Provisional

Probab=81.80  E-value=6.4  Score=39.47  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=47.5

Q ss_pred             hhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHH---HhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHH
Q psy3081           7 SLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPAL---RRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWI   83 (327)
Q Consensus         7 ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (327)
                      +++|+++|-.+..   ..+.+.++++.+++|..|++.-++-+   ||++.+...++...++.+.. ++....+++++++.
T Consensus        44 L~vgl~~g~~~~~---~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  119 (558)
T PRK04972         44 LVVSLLLGQQHFS---INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALV-IALGLGKLFGWDIG  119 (558)
T ss_pred             HHHHHHHHhCCCC---CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHH
Confidence            4566666654432   23456799999999999999987754   44445555555555555433 34445567888765


Q ss_pred             H
Q psy3081          84 W   84 (327)
Q Consensus        84 ~   84 (327)
                      .
T Consensus       120 ~  120 (558)
T PRK04972        120 L  120 (558)
T ss_pred             H
Confidence            4

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=81.74  E-value=6.9  Score=39.25  Aligned_cols=72  Identities=21%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081          26 SYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSI-FAAVSPAV   99 (327)
Q Consensus        26 ~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~-ls~Ts~~v   99 (327)
                      .+.++|+.++++..|++--.+   .+|+++.+...++..-.+++........++.+++++..  ..|.+ =+-|+|+.
T Consensus       448 ~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~~aG~~t~t~~  523 (562)
T TIGR03802       448 LLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPAL--LLGALAGARTATPA  523 (562)
T ss_pred             HHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHhhccCCCcHH
Confidence            799999999999999988875   44555666666666666666555666776788888663  44443 34455543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK04972 putative transporter; Provisional

Probab=80.58  E-value=7.9  Score=38.80  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081          25 SSYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSI-FAAVSPAV   99 (327)
Q Consensus        25 ~~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~-ls~Ts~~v   99 (327)
                      ..++|+|+.+++...|++--.+   .+++++.+....+..-.+++.....+++++.+++++..  .+|++ =+-|+|+.
T Consensus       442 ~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~~--~~G~~aG~~t~~~~  518 (558)
T PRK04972        442 NMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRAL--LFGAIMGARTCAPA  518 (558)
T ss_pred             HHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHhCCCCCcHH
Confidence            3899999999999999987765   44555666666666666677666777888899998773  44543 44556554

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=80.55  E-value=47  Score=30.53  Aligned_cols=126  Identities=13%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             hhhhhhheeccccccccc---cHH-HH---HHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081           5 LFSLFGAFIGGNSEMVLD---EFS-SY---RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF   77 (327)
Q Consensus         5 ~~ll~GillGp~~~~~~~---~~~-~l---~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (327)
                      ..++.|.++--..++.++   ... -+   +.--+.+++|-.|-++|+++..+..||-..+.+.=+.+... .++....+
T Consensus        17 VPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~-lgl~~~~~   95 (314)
T PF03812_consen   17 VPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGAL-LGLLVGKF   95 (314)
T ss_pred             HHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence            445566665544444322   111 11   13446788999999999999999888887776666665543 44555556


Q ss_pred             cCCc-------H-HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHH
Q psy3081          78 LNLP-------W-IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFG  138 (327)
Q Consensus        78 ~~~~-------~-~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~  138 (327)
                      +|.+       + ..++.+=++++.+.++.=.+...|+.+     ++|.  -..+...+||.=-+.++.
T Consensus        96 fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-----~~D~--gA~~i~sl~~GPf~tMl~  157 (314)
T PF03812_consen   96 FGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-----EEDV--GAFSILSLNDGPFFTMLA  157 (314)
T ss_pred             cCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-----HHHh--HHHHHHHhhhhHHHHHHH
Confidence            6543       1 356666677888888876676655443     3343  334556677776655543

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.78
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.11
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	96.43
2htg_A	28	NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute;	94.98

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.78  E-value=3.4e-19  Score=165.24  Aligned_cols=269  Identities=14%  Similarity=0.149  Sum_probs=174.6

Q ss_pred             cHHHHHHHHHHHHHHHhccCCChHHH----Hhhhh--hhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccc
Q psy3081          23 EFSSYRKMALVVILTRAGLDLDPPAL----RRLWS--TVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVS   96 (327)
Q Consensus        23 ~~~~l~~~gl~lllF~~Gle~~~~~l----~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts   96 (327)
                      ..+.+.|-.+.+++|.+|+|+|.+.+    |+.+|  .+...+..++++|+.+     +..++.+...+..-+.+.++||
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~~~~~~~~~~gw~ip~ATd  133 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAFNYADPITREGWAIPAATD  133 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGGCCSSTTHHHHTSSSSCCC
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHhcCChhhhhhhHHHHHHH
Confidence            34578899999999999999999977    55544  3566677788888543     4567776666778889999999


Q ss_pred             hhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081          97 PAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAK  176 (327)
Q Consensus        97 ~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~  176 (327)
                      .+.++.++..+.++   .|++.++.+++.+.+||+.+|++++++.+   ++.+ .....       .. +.....-+..+
T Consensus       134 IAfal~vL~~lg~~---~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~-~~~l~-------~~-~~~~~~~~~l~  198 (388)
T 1zcd_A          134 IAFALGVLALLGSR---VPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS-MASLG-------VA-AVAIAVLAVLN  198 (388)
T ss_dssp             HHHHHHHHHSSCSS---SCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC-HHHHH-------HH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc-HHHHH-------HH-HHHHHHHHHHH
Confidence            99998888776533   57788899999999999999999988753   2221 11111       00 11111112222


Q ss_pred             hhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHH-HHHHH
Q psy3081         177 VVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWM-IFEPI  255 (327)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~pl  255 (327)
                      |.  +.+   + ......+  ++.++..+|..|+|  +.+|++++|+++....+ ++ +...+++++++++... ++.|+
T Consensus       199 r~--~v~---~-~~~y~~l--gl~~w~~~~~sGvH--atigg~l~Gl~ip~~~~-~~-~~~~~~le~~l~p~v~~~ilPl  266 (388)
T 1zcd_A          199 LC--GAR---R-TGVYILV--GVVLWTAVLKSGVH--ATLAGVIVGFFIPLKEK-HG-RSPAKRLEHVLHPWVAYLILPL  266 (388)
T ss_dssp             HT--TCC---C-THHHHHH--HHHHHHHTTTSHHH--HHHHHHHHHHHSCCCGG-GS-SCHHHHHHHHHHHHHHHTHHHH
T ss_pred             Hh--cch---h-HHHHHHH--HHHHHHHHHHhCcc--HHHHHHHHHHhccCCCc-cC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            21  111   1 1111222  33445556777666  67776666666543111 11 1124567778888774 78999


Q ss_pred             H-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHH----HHHHHhCC------CCChhhHHHHhhccccchhhhhhc
Q psy3081         256 L-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILI----TVLVAVGS------SLNLKEKLFVAFSWMAKASVQLFL  323 (327)
Q Consensus       256 f-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~----~~l~~~~~------~~~~~e~~~~~~~~~pr~~v~~al  323 (327)
                      | |...|.++|....+...-.....+.+..+++|+++    +++..+..      |++|||..-+|+.+.-+++++.-+
T Consensus       267 FaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~I  345 (388)
T 1zcd_A          267 FAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFI  345 (388)
T ss_dssp             HHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHH
T ss_pred             HHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHH
Confidence            9 99999999985432110111123444558999999    55554544      899999988877666678887654

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.11  E-value=0.0073  Score=54.94  Aligned_cols=165  Identities=19%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             chhhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhh---hhhhchhHH-HHHHHHHHHHHHHhc
Q psy3081           3 KHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWST---VLKLGLVPW-AVEAISVVIATHYFL   78 (327)
Q Consensus         3 ~~~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~~~   78 (327)
                      .++.++.++++|-..++..+..+......+.+.||..|+++|.+++++..++   ......... +.|..  ++.....+
T Consensus        20 ~~l~i~~~~~lg~~~P~~~~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll--~~~l~~~~   97 (332)
T 3zux_A           20 FSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPAT--AWCLSKLL   97 (332)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHH--HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence            4566777888886555534444455567899999999999999999954443   322222222 23322  22333355


Q ss_pred             CCcHHHHHHHHhHhhccchhhhH-HHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy3081          79 NLPWIWAFLTGSIFAAVSPAVVV-PCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLG  157 (327)
Q Consensus        79 ~~~~~~alllg~~ls~Ts~~v~~-~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~  157 (327)
                      +.+.  .+..|.++.+..|..+. .++.++ .++     +. ........+++..+++...+...+..++... .+....
T Consensus        98 ~l~~--~~~~Glil~~~~P~~~~s~v~t~~-a~G-----d~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~-v~~~~~  167 (332)
T 3zux_A           98 NLPA--EIAVGVILVGCCPGGTASNVMTYL-ARG-----NV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE-IQAAGM  167 (332)
T ss_dssp             TCCH--HHHHHHHHHHHSCCCTHHHHHHHH-TTC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred             CCCh--HHHHHHHHHhcCCchhHHHHHHHH-hCC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CCHHHH
Confidence            6554  34445554444443333 333332 233     32 5667778899999988888777665543321 112222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc
Q psy3081         158 PSSLIIGLAFGIIWGSLAKVVP  179 (327)
Q Consensus       158 ~~~i~~g~~~g~~~g~l~~~~~  179 (327)
                      ..++..-+++-.+.|.+.|+..
T Consensus       168 ~~~l~~~vllP~~lG~l~r~~~  189 (332)
T 3zux_A          168 LMSIVKMVLLPIVLGLIVHKVL  189 (332)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            2333333334444555555443

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=96.43  E-value=0.00029  Score=40.92  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             cHHHHHHHHhHhhccchhhhHHHHHHhhh
Q psy3081          81 PWIWAFLTGSIFAAVSPAVVVPCLFKLRS  109 (327)
Q Consensus        81 ~~~~alllg~~ls~Ts~~v~~~~l~~l~~  109 (327)
                      +|..++++|+++++|||+.+.+++++++.
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~v   30 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK   30 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence            45568899999999999999999887653

>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}

Probab=94.98  E-value=0.0016  Score=36.06  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             CCCChhHHHHHHhhhhhHHHHHHHH
Q psy3081         114 VAKGIPTLVIAVSGMGDATSVAIFG  138 (327)
Q Consensus       114 ~~~~~~~~l~~~a~l~D~~~v~l~~  138 (327)
                      .++++..++.+||.+||.++++++.
T Consensus         2 V~~~L~~lvfGESllNDavaiVlf~   26 (28)
T 2htg_A            2 INELLHILVFGESLLNDAVTVVLYK   26 (28)
T ss_dssp             CSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred             CCceEEEEEEeeeeecccEEEEEEe
Confidence            4678999999999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00