Psyllid ID: psy3090

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MQTNHSHKEYKQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLPIVL
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHEEcEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHcc
cccccccHHHHHHHEEccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccHHHccccccccccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHEEEEc
MQTNHSHKEYKQQIVEQVTMITlnnnvsindtfdflyfdhdlnltdCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRsmrtptncyLVSLSIADLMVLIAAVPNELVSYYQEKYTWlwgnygckmSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIysspwlfltetrqidpfretcdfklprsyyLVYFFTDIIVFYVIPLALSCLLYILIAHALLSsksmkhkgrlihSNVTMVSVTHrhtknnssraqvsvpclvhfPFVLHYLVHLPIVL
mqtnhshkeykQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLPIVL
MQTNHSHKEYKQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRiigtifqsiifiVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLPIVL
************QIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTH*********AQVSVPCLVHFPFVLHYLVHLPIV*
**************V******************DFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALL***********************************SVPCLVHFPFVLHYLVHLPIVL
**********KQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLPIVL
*****SHKEYKQQIVEQVTMITLNN******************************************KEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSK**************************SSRAQVSVPCLVHFPFVLHYLVHLPIVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQTNHSHKEYKQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLPIVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query326 2.2.26 [Sep-21-2011]
Q28596 398 Thyrotropin-releasing hor N/A N/A 0.751 0.615 0.431 5e-47
O46639 398 Thyrotropin-releasing hor yes N/A 0.751 0.615 0.427 9e-47
P34981 398 Thyrotropin-releasing hor yes N/A 0.751 0.615 0.409 1e-46
O93603 395 Thyrotropin-releasing hor yes N/A 0.717 0.592 0.426 2e-46
P21761 393 Thyrotropin-releasing hor yes N/A 0.705 0.585 0.437 7e-46
Q01717 412 Thyrotropin-releasing hor yes N/A 0.705 0.558 0.417 2e-43
O55040 405 Neuromedin-U receptor 1 O no N/A 0.782 0.629 0.285 9e-24
Q9GZQ4 415 Neuromedin-U receptor 2 O no N/A 0.579 0.455 0.335 3e-18
O43614 444 Orexin receptor type 2 OS no N/A 0.539 0.396 0.326 3e-18
Q9ESQ4 395 Neuromedin-U receptor 2 O no N/A 0.576 0.475 0.326 5e-18
>sp|Q28596|TRFR_SHEEP Thyrotropin-releasing hormone receptor OS=Ovis aries GN=TRHR PE=2 SV=1 Back     alignment and function desciption
 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 156/262 (59%), Gaps = 17/262 (6%)

Query: 58  QELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVS 117
            EL   Q   + + +LEY+++  +   II  +G++GNIMVV VV + + MRTPTNCYLVS
Sbjct: 7   SELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVS 66

Query: 118 LSIADLMVLIAA-VPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVER 176
           L++ADLMVL+AA +PN   S Y    +W++G  GC    +LQYLGINASS ++ AFT+ER
Sbjct: 67  LAVADLMVLVAAGLPNITDSIYG---SWVYGYVGCLCITYLQYLGINASSCSITAFTIER 123

Query: 177 YIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTE---TRQIDPFRETCDFKL 233
           YIAIC P+ A  +CT +RA+KI+I+VW F  IY   W FL +   +   D    +C +K+
Sbjct: 124 YIAICHPIKAQFLCTFSRAKKIIIFVWAFTSIYCMLWFFLLDLNISTYKDAIVVSCGYKI 183

Query: 234 PRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSS--------KSMKHKGRLIHSNV 285
            R+YY   +  D  VFYV+P+ L+ +LY  IA  L  S         S   K    H N 
Sbjct: 184 SRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLSPIPSDPKENSNTWKNDSTHQNK 243

Query: 286 TMVSVTHRHTKNN--SSRAQVS 305
            + S T     N+  SSR QV+
Sbjct: 244 NLNSKTSNRYFNSTVSSRKQVT 265
Receptor for thyrotropin-releasing hormone. This receptor is mediated by G proteins which activate a phosphatidylinositol-calcium second messenger system.
Ovis aries (taxid: 9940)
>sp|O46639|TRFR_BOVIN Thyrotropin-releasing hormone receptor OS=Bos taurus GN=TRHR PE=3 SV=1 Back     alignment and function description
>sp|P34981|TRFR_HUMAN Thyrotropin-releasing hormone receptor OS=Homo sapiens GN=TRHR PE=1 SV=1 Back     alignment and function description
>sp|O93603|TRFR_CHICK Thyrotropin-releasing hormone receptor OS=Gallus gallus GN=TRHR PE=2 SV=1 Back     alignment and function description
>sp|P21761|TRFR_MOUSE Thyrotropin-releasing hormone receptor OS=Mus musculus GN=Trhr PE=2 SV=1 Back     alignment and function description
>sp|Q01717|TRFR_RAT Thyrotropin-releasing hormone receptor OS=Rattus norvegicus GN=Trhr PE=2 SV=1 Back     alignment and function description
>sp|O55040|NMUR1_MOUSE Neuromedin-U receptor 1 OS=Mus musculus GN=Nmur1 PE=2 SV=1 Back     alignment and function description
>sp|Q9GZQ4|NMUR2_HUMAN Neuromedin-U receptor 2 OS=Homo sapiens GN=NMUR2 PE=2 SV=2 Back     alignment and function description
>sp|O43614|OX2R_HUMAN Orexin receptor type 2 OS=Homo sapiens GN=HCRTR2 PE=2 SV=2 Back     alignment and function description
>sp|Q9ESQ4|NMUR2_RAT Neuromedin-U receptor 2 OS=Rattus norvegicus GN=Nmur2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
242001702233 thyrotropin-releasing hormone receptor, 0.585 0.819 0.625 2e-63
391332917 463 PREDICTED: thyrotropin-releasing hormone 0.680 0.479 0.512 1e-61
391332919 451 PREDICTED: thyrotropin-releasing hormone 0.604 0.436 0.563 1e-60
321472086311 hypothetical protein DAPPUDRAFT_22381 [D 0.677 0.710 0.568 8e-57
443685026359 hypothetical protein CAPTEDRAFT_90908 [C 0.702 0.637 0.487 3e-53
126322215396 PREDICTED: thyrotropin-releasing hormone 0.748 0.616 0.425 1e-46
345316959352 PREDICTED: thyrotropin-releasing hormone 0.723 0.670 0.439 3e-46
351695845266 Thyrotropin-releasing hormone receptor [ 0.745 0.913 0.422 6e-46
325652172416 TRHR1a protein [Oryzias latipes] gi|3171 0.693 0.543 0.460 6e-46
327269374393 PREDICTED: thyrotropin-releasing hormone 0.644 0.534 0.475 7e-46
>gi|242001702|ref|XP_002435494.1| thyrotropin-releasing hormone receptor, putative [Ixodes scapularis] gi|215498830|gb|EEC08324.1| thyrotropin-releasing hormone receptor, putative [Ixodes scapularis] Back     alignment and taxonomy information
 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 147/195 (75%), Gaps = 4/195 (2%)

Query: 71  FSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAV 130
           +S+ YRIIGTIFQ IIF VG+LGNIMVV VV + RSM TPTNCYLVSLS+AD MVL+A+V
Sbjct: 16  YSVNYRIIGTIFQGIIFGVGVLGNIMVVIVVMRTRSMHTPTNCYLVSLSVADFMVLVASV 75

Query: 131 PNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRIC 190
           PNE++SYY     W+WG  GC + +FLQYLGINASSL++ AFTVERYIAIC PM A  +C
Sbjct: 76  PNEIISYYVLGDEWIWGRAGCALFIFLQYLGINASSLSITAFTVERYIAICLPMKAQTVC 135

Query: 191 TLNRARKILIYVWIFAVIYSSPWLFLTETRQI----DPFRETCDFKLPRSYYLVYFFTDI 246
           T+ RA+KI++ VW+FA  Y SPWL LT T  +        ETC F L R +Y  YFF DI
Sbjct: 136 TVKRAKKIILGVWLFACSYCSPWLALTTTEAVYYKGHENIETCTFALSRHHYRSYFFADI 195

Query: 247 IVFYVIPLALSCLLY 261
           I+FYV+PL LSC+ Y
Sbjct: 196 ILFYVVPLLLSCICY 210

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|391332917|ref|XP_003740874.1| PREDICTED: thyrotropin-releasing hormone receptor-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|391332919|ref|XP_003740875.1| PREDICTED: thyrotropin-releasing hormone receptor-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|321472086|gb|EFX83057.1| hypothetical protein DAPPUDRAFT_22381 [Daphnia pulex] Back     alignment and taxonomy information
>gi|443685026|gb|ELT88781.1| hypothetical protein CAPTEDRAFT_90908 [Capitella teleta] Back     alignment and taxonomy information
>gi|126322215|ref|XP_001369654.1| PREDICTED: thyrotropin-releasing hormone receptor-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|345316959|ref|XP_001516760.2| PREDICTED: thyrotropin-releasing hormone receptor-like [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|351695845|gb|EHA98763.1| Thyrotropin-releasing hormone receptor [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|325652172|ref|NP_001191719.1| TRHR1a protein [Oryzias latipes] gi|317107850|dbj|BAJ53740.1| thyrotropin-releasing hormone receptor 1a [Oryzias latipes] Back     alignment and taxonomy information
>gi|327269374|ref|XP_003219469.1| PREDICTED: thyrotropin-releasing hormone receptor-like [Anolis carolinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
UNIPROTKB|E2R0P6 398 TRHR "Uncharacterized protein" 0.815 0.668 0.398 7.9e-46
ZFIN|ZDB-GENE-050419-193 497 trhr2 "thyrotropin releasing h 0.592 0.388 0.502 1e-45
UNIPROTKB|O46639 398 TRHR "Thyrotropin-releasing ho 0.809 0.663 0.401 1.6e-45
UNIPROTKB|D5FUH2299 TRHR "Truncated thyrotropin-re 0.751 0.819 0.424 1.6e-45
UNIPROTKB|O93603 395 TRHR "Thyrotropin-releasing ho 0.604 0.498 0.470 2.7e-45
UNIPROTKB|P34981 398 TRHR "Thyrotropin-releasing ho 0.815 0.668 0.391 2.7e-45
MGI|MGI:98824 393 Trhr "thyrotropin releasing ho 0.803 0.666 0.401 2.7e-45
UNIPROTKB|F1NC13 395 TRHR "Thyrotropin-releasing ho 0.604 0.498 0.466 5.6e-45
UNIPROTKB|F1NZL4 400 TRHR "Thyrotropin-releasing ho 0.604 0.492 0.466 5.6e-45
ZFIN|ZDB-GENE-100922-18 393 trhra "thyrotropin-releasing h 0.708 0.587 0.420 3.9e-44
UNIPROTKB|E2R0P6 TRHR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 114/286 (39%), Positives = 164/286 (57%)

Query:    57 LQELQCNQTIVKEMFSLEYRXXXXXXXXXXXXVGLLGNIMVVSVVYKIRSMRTPTNCYLV 116
             + EL   Q   + + +LEY+            +G++GNIMVV VV + + MRTPTNCYLV
Sbjct:     6 VSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLV 65

Query:   117 SLSIADLMVLIAA-VPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVE 175
             SL++ADLMVL+AA +PN   S Y    +W++G  GC    +LQYLGINASS ++ AFT+E
Sbjct:    66 SLAVADLMVLVAAGLPNITDSIYG---SWVYGYVGCLCITYLQYLGINASSCSITAFTIE 122

Query:   176 RYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRE----TCDF 231
             RYIAIC P+ A  +CT +RA+KI+I+VW F  IY   W FL +   I  +++    +C +
Sbjct:   123 RYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSIYCMLWFFLLDLN-ISTYKDAIVVSCGY 181

Query:   232 KLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALL--------SSKSMKHKGRLIHS 283
             K+ R+YY   +  D  VFYV+P+ L+ +LY  IA  L            S   K    H 
Sbjct:   182 KISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQ 241

Query:   284 NVTMVSVTHRHTKNN--SSRAQVS-VPCLVHFPFVLHYLVHLPIVL 326
             N  + S T     N+  SSR QV+ +  +V   F L ++ +  +V+
Sbjct:   242 NKNLNSKTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVV 287
GO:0016021 "integral to membrane" evidence=IEA
GO:0004997 "thyrotropin-releasing hormone receptor activity" evidence=IEA
ZFIN|ZDB-GENE-050419-193 trhr2 "thyrotropin releasing hormone receptor 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O46639 TRHR "Thyrotropin-releasing hormone receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D5FUH2 TRHR "Truncated thyrotropin-releasing hormone receptor isoform 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O93603 TRHR "Thyrotropin-releasing hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P34981 TRHR "Thyrotropin-releasing hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:98824 Trhr "thyrotropin releasing hormone receptor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NC13 TRHR "Thyrotropin-releasing hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZL4 TRHR "Thyrotropin-releasing hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100922-18 trhra "thyrotropin-releasing hormone receptor a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O46639TRFR_BOVINNo assigned EC number0.42740.75150.6155yesN/A
P34981TRFR_HUMANNo assigned EC number0.40900.75150.6155yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 6e-34
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 3e-15
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 2e-11
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 5e-07
pfam10328275 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR 2e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  124 bits (314), Expect = 6e-34
 Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 100 VVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQY 159
           V+ + + +RTPTN +L++L++ADL+ L+   P     YY     W +G+  CK+  FL  
Sbjct: 2   VILRTKKLRTPTNIFLLNLAVADLLFLLTLPP--WALYYLVGGDWPFGDALCKLVGFLFV 59

Query: 160 LGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTET 219
           +   AS L L A +++RY+AI  P+   RI T  RA+ +++ VW+ A++ S P L  +  
Sbjct: 60  VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL 119

Query: 220 RQI-DPFRETCDFKLP-RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHK 277
           R + +    TC    P  S    Y     ++ +V+PL +  + Y LI   L      K  
Sbjct: 120 RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTL-----RKRA 174

Query: 278 GRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVH 321
                      S +            V V  L   P+ +  L+ 
Sbjct: 175 RSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLD 218

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 326
KOG4219|consensus 423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 99.97
PHA03235 409 DNA packaging protein UL33; Provisional 99.97
PHA02638417 CC chemokine receptor-like protein; Provisional 99.97
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.96
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.96
KOG4220|consensus 503 99.95
KOG2087|consensus 363 99.85
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.71
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.57
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.54
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.47
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.18
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.16
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.08
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.95
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.62
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.51
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.33
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.31
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.15
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.1
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.06
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 97.82
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.76
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.66
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 97.53
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.26
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 97.05
KOG4193|consensus610 96.78
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 96.69
KOG4564|consensus473 96.6
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 96.57
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 96.22
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 96.03
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 95.84
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 95.58
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 94.25
PF13853144 7tm_4: Olfactory receptor 90.58
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-35  Score=252.08  Aligned_cols=236  Identities=22%  Similarity=0.395  Sum_probs=200.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccccc
Q psy3090          72 SLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGC  151 (326)
Q Consensus        72 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C  151 (326)
                      +...+.+.++++.++.+++++||+++++++..+|++|+.+|++++|||+||++.+++..++.....+.  ++|.+|...|
T Consensus        31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G~f~C  108 (423)
T KOG4219|consen   31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFGSFYC  108 (423)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hcccccccee
Confidence            45667888899999999999999999999999999999999999999999999999999988877776  9999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCC----cce
Q psy3090         152 KMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDP----FRE  227 (326)
Q Consensus       152 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~----~~~  227 (326)
                      ++..++..+...+|++++++||+|||.||.+|++.+  .+++.++..++++|+++++++.|..+..+......    ...
T Consensus       109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~  186 (423)
T KOG4219|consen  109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRV  186 (423)
T ss_pred             eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceE
Confidence            999999999999999999999999999999999887  49999999999999999999999999877665222    255


Q ss_pred             eecccCCcc-----hh----hhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccc
Q psy3090         228 TCDFKLPRS-----YY----LVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNN  298 (326)
Q Consensus       228 ~C~~~~~~~-----~~----~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (326)
                      .|...+++.     ..    ..|.....++.+++|++++...|..|.+++|..+..+.++             .|..++.
T Consensus       187 ~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~-------------d~~~~~~  253 (423)
T KOG4219|consen  187 VCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQ-------------DRKHEQL  253 (423)
T ss_pred             EEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchh-------------chhhHHH
Confidence            665544332     11    1266777888899999999999999999999887433322             1234567


Q ss_pred             cccceeeeeeE-EehhHHHHhhhcccc
Q psy3090         299 SSRAQVSVPCL-VHFPFVLHYLVHLPI  324 (326)
Q Consensus       299 ~~~~~~~~~~~-v~i~f~i~~~~~~p~  324 (326)
                      +.+|++.||++ ++++|.+||+|..+.
T Consensus       254 kak~K~vkmliiVV~~FaicWlPyh~y  280 (423)
T KOG4219|consen  254 KAKKKVVKMLIIVVVIFAICWLPYHIY  280 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhHH
Confidence            77888888887 667999999998764

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF13853 7tm_4: Olfactory receptor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 1e-15
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 5e-15
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 9e-15
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 1e-14
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-14
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-14
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-14
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 3e-14
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 4e-14
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 4e-14
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-14
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-14
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 3e-13
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 6e-13
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 7e-12
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 1e-11
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-09
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-09
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 3e-09
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 3e-09
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 3e-09
2x72_A349 Crystal Structure Of The Constitutively Active E113 3e-09
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 4e-09
4grv_A 510 The Crystal Structure Of The Neurotensin Receptor N 5e-09
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 1e-08
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 2e-08
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-08
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-08
3vw7_A 484 Crystal Structure Of Human Protease-Activated Recep 3e-08
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 7e-08
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 8e-08
2ks9_A364 Solution Conformation Of Substance P In Water Compl 3e-07
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 4e-07
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 9e-06
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 1e-05
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 2e-05
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 2e-05
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 5e-05
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 91  LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
           + GN++V++ + K   ++T TN ++ SL+ ADL++ +A VP    + +    TW +GN+ 
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP--FGAAHILTKTWTFGNFW 254
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
           C+    +  L + AS   L    V+RY AI  P     + T N+AR I++ VWI + + S
Sbjct: 255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 314
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYIL 263
                  W   T    I+ + E   CDF   ++Y +    + I+ FYV PL +   +Y  
Sbjct: 315 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVYSR 370
Query: 264 IAHALLS--SKSMKHKGRLIHSNVTMVSVTHR--HTKNNSSR 301
           +         K  K +GR    N++ V    R  H    SS+
Sbjct: 371 VFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 412
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 1e-42
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 2e-40
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-36
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-35
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-34
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 7e-33
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 1e-32
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-31
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 4e-31
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 5e-31
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-30
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-30
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 4e-29
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 3e-28
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 6e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  149 bits (379), Expect = 1e-42
 Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 9/207 (4%)

Query: 72  SLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVP 131
                ++     ++I +  ++GN++V+ ++   + MRT TN +LV+L+ A+  +      
Sbjct: 28  PAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 87

Query: 132 NELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICT 191
                       W +G + CK   F     + AS  ++ A   +RY+AI  P+      +
Sbjct: 88  VNFTYAVHN--EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL--S 143

Query: 192 LNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP----RSYYLVYFFTDII 247
               + ++  +W+ A++ + P  + + T  + P R  C  + P    + Y  VY     +
Sbjct: 144 ATATKVVICVIWVLALLLAFPQGYYSTTETM-PSRVVCMIEWPEHPNKIYEKVYHICVTV 202

Query: 248 VFYVIPLALSCLLYILIAHALLSSKSM 274
           + Y +PL +    Y ++   L +S+  
Sbjct: 203 LIYFLPLLVIGYAYTVVGITLWASEIP 229
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 100.0
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.98
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.98
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.98
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.97
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.97
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.97
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.97
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.97
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.97
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.52
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.41
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 86.63
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=3.4e-37  Score=288.35  Aligned_cols=201  Identities=24%  Similarity=0.466  Sum_probs=174.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCC---ChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccc
Q psy3090          73 LEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMR---TPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNY  149 (326)
Q Consensus        73 ~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~---~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~  149 (326)
                      ...+++..++|++++++|++||+++++++.++|++|   ++.|+|++|||++|++.++..+|+.+.........|.+|+.
T Consensus        29 ~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~  108 (510)
T 4grv_A           29 IYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDA  108 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHH
Confidence            455778888999999999999999999999887655   68899999999999999999999998887765578999999


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccC-----C
Q psy3090         150 GCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQID-----P  224 (326)
Q Consensus       150 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~-----~  224 (326)
                      .|++..++..++..+|++++++||+|||++|++|++|+...+++++..+++++|++++++++|+++.++.....     .
T Consensus       109 ~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~  188 (510)
T 4grv_A          109 GCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHP  188 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987654422     2


Q ss_pred             cceeecccCCcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Q psy3090         225 FRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKS  273 (326)
Q Consensus       225 ~~~~C~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~  273 (326)
                      ....|...++......|..+..++.+++|+++|+++|.+|+++++++.+
T Consensus       189 ~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~  237 (510)
T 4grv_A          189 GGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVN  237 (510)
T ss_dssp             GGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred             CccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence            3456777776666666777778888999999999999999999987644
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 326
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 2e-13
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 74  EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNE 133
           ++ ++      ++ ++G   N + + V  + + +RTP N  L++L++ADL ++       
Sbjct: 36  QFSMLAAYM-FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT-- 92

Query: 134 LVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLN 193
              Y      +++G  GC +  F   LG   +  +L+   +ERY+ +CKPM   R    +
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152

Query: 194 RARKILIYVWIFAVIYSSPWLFLTET---RQIDPFRETCDFKLPRSYYLVYFFTDIIVFY 250
               +     +     + P +  +                     +    +     +V +
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212

Query: 251 VIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVT 291
           +IPL +    Y  +   +  + + + +          V+  
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRM 253

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.96
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.2e-29  Score=223.48  Aligned_cols=230  Identities=19%  Similarity=0.376  Sum_probs=184.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccc
Q psy3090          73 LEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCK  152 (326)
Q Consensus        73 ~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~  152 (326)
                      +....+.++++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....  +.|..+...|+
T Consensus        34 ~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~--~~~~~~~~~c~  111 (348)
T d1u19a_          34 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH--GYFVFGPTGCN  111 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--CccccCchhhh
Confidence            3445677788899999999999999999999999999999999999999999999888988877766  77888899999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeeccc
Q psy3090         153 MSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFK  232 (326)
Q Consensus       153 ~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (326)
                      ...++...+..++.++++++++|||.+|.+|++|+.. ++++....+..+|..++++..|+.+.............|...
T Consensus       112 ~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (348)
T d1u19a_         112 LEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID  190 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECC
T ss_pred             hhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCcccccccc
Confidence            9999999999999999999999999999999998774 666777888888999999999888877666545555555443


Q ss_pred             CC----cchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeee
Q psy3090         233 LP----RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPC  308 (326)
Q Consensus       233 ~~----~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (326)
                      ..    ......+......+.+++|++++.++|.++.++++|++++.++..                ++.++++++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~  254 (348)
T d1u19a_         191 YYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESA----------------TTQKAEKEVTRMV  254 (348)
T ss_dssp             CSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCSSS----------------HHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhh----------------hhHHHHhhHhheE
Confidence            22    223334566667777899999999999999888776654433322                2334456666666


Q ss_pred             E-EehhHHHHhhhc
Q psy3090         309 L-VHFPFVLHYLVH  321 (326)
Q Consensus       309 ~-v~i~f~i~~~~~  321 (326)
                      + +.+.|.+||+|.
T Consensus       255 ~~i~~~f~~~~~P~  268 (348)
T d1u19a_         255 IIMVIAFLICWLPY  268 (348)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             EEeehHHHHHhhHH
Confidence            5 667999999985