Psyllid ID: psy312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLilndfpsvneaITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Flexible Loop (DISEMBL)
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Low Complexity Region (SEG)
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Disordered region (IsUnstruct)
****ELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYT****
Disordered Region (DISOPRED)
******DLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSK*******ECDQKLMNLRDDMAADLYDLEEEYYT****
Disordered Region (DISEMBL)
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Disordered Region (DISPRO)
***CELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYTSVYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q9V439	143	Mediator of RNA polymeras	yes	N/A	0.988	0.622	0.764	4e-35
Q178E6	138	Mediator of RNA polymeras	N/A	N/A	1.0	0.652	0.777	3e-34
Q7QB45	138	Mediator of RNA polymeras	yes	N/A	1.0	0.652	0.777	3e-34
A5WUL3	198	Mediator of RNA polymeras	no	N/A	0.955	0.434	0.709	2e-30
Q15528	200	Mediator of RNA polymeras	no	N/A	0.833	0.375	0.706	1e-24
Q800L3	203	Mediator of RNA polymeras	no	N/A	0.833	0.369	0.693	1e-24
Q6GQ95	201	Mediator of RNA polymeras	N/A	N/A	0.833	0.373	0.693	2e-24
Q62276	200	Mediator of RNA polymeras	no	N/A	0.833	0.375	0.693	5e-24
A0JPN6	200	Mediator of RNA polymeras	yes	N/A	0.833	0.375	0.693	5e-24
Q5E9K2	201	Mediator of RNA polymeras	yes	N/A	0.833	0.373	0.693	7e-24

>sp|Q9V439|MED22_DROME Mediator of RNA polymerase II transcription subunit 22 OS=Drosophila melanogaster GN=MED22 PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 78/89 (87%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQCE D  EM VRA N+VRAGESL+KLV+D+KQYLILNDF SVNEAIT NS+LFR  Q+E
Sbjct: 55  TQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEAITNNSQLFRNTQSE 114

Query: 62  CDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           CD+KLM LRD+MA DLYDLEEEYYTS++K
Sbjct: 115 CDKKLMKLRDEMAMDLYDLEEEYYTSIFK 143

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Drosophila melanogaster (taxid: 7227)

>sp|Q178E6|MED22_AEDAE Mediator of RNA polymerase II transcription subunit 22 OS=Aedes aegypti GN=MED22 PE=3 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 78/90 (86%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEM VRA NIVRAGESL+KLVSDIKQYLILNDF SVNEAI  +S+L+R+ Q 
Sbjct: 49  MTQCEQDTYEMQVRASNIVRAGESLMKLVSDIKQYLILNDFHSVNEAICSSSQLYRSTQM 108

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           + D KLM +RDDMAADLYDLEEEYYTS+YK
Sbjct: 109 DRDNKLMAVRDDMAADLYDLEEEYYTSMYK 138

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q7QB45|MED22_ANOGA Mediator of RNA polymerase II transcription subunit 22 OS=Anopheles gambiae GN=MED22 PE=3 SV=3

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 76/90 (84%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           +TQCE D YE  VRA NIVRAGESL+KLVSDIKQYLILNDF SVNEAI  NS L+RT Q 
Sbjct: 49  ITQCEQDTYETQVRAANIVRAGESLMKLVSDIKQYLILNDFHSVNEAICSNSTLYRTTQI 108

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           + D KLM +RDDMAADLYDLEEEYYTS+YK
Sbjct: 109 DRDNKLMAVRDDMAADLYDLEEEYYTSIYK 138

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|A5WUL3|MED22_DANRE Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio GN=med22 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 75/86 (87%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D +EMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI+  ++  RT Q E
Sbjct: 52  TQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEE 111

Query: 62  CDQKLMNLRDDMAADLYDLEEEYYTS 87
           CD+KL++LRD++A DLY+LEEEYY+S
Sbjct: 112 CDKKLISLRDEIAIDLYELEEEYYSS 137

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q15528|MED22_HUMAN Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  RT Q E
Sbjct: 52  TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEISID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q800L3|MED22_CHICK Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus GN=MED22 PE=3 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 63/75 (84%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R+ Q E
Sbjct: 52  TQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRD+++ D
Sbjct: 112 CDKKLIALRDEISID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q6GQ95|MED22_XENLA Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus laevis GN=med22 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 63/75 (84%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVR+ NIVRAGESL+KLVSD+KQ+LILNDFPSVNE+I Q ++  RT + E
Sbjct: 52  TQGEQDNYEMHVRSANIVRAGESLMKLVSDLKQFLILNDFPSVNESINQRNQQLRTLREE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRDD+A D
Sbjct: 112 CDKKLIALRDDIAID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q62276|MED22_MOUSE Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=2 SV=2

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 62/75 (82%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct: 52  TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEVSID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|A0JPN6|MED22_RAT Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 62/75 (82%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct: 52  TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEVSID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Rattus norvegicus (taxid: 10116)

>sp|Q5E9K2|MED22_BOVIN Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 62/75 (82%)

Query: 2   TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
           TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct: 52  TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query: 62  CDQKLMNLRDDMAAD 76
           CD+KL+ LRD+++ D
Sbjct: 112 CDRKLIALRDEVSID 126

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
350415962	140	PREDICTED: mediator of RNA polymerase II	1.0	0.642	0.9	2e-41
48095446	140	PREDICTED: mediator of RNA polymerase II	1.0	0.642	0.9	2e-41
383848414	170	PREDICTED: mediator of RNA polymerase II	1.0	0.529	0.9	4e-41
340711528	140	PREDICTED: mediator of RNA polymerase II	1.0	0.642	0.9	4e-41
91091902	140	PREDICTED: similar to surfeit 5 [Triboli	1.0	0.642	0.888	1e-40
242019977	140	Surfeit locus protein, putative [Pedicul	1.0	0.642	0.877	3e-40
332028350	140	Mediator of RNA polymerase II transcript	1.0	0.642	0.877	4e-40
156544070	140	PREDICTED: mediator of RNA polymerase II	1.0	0.642	0.877	5e-40
322785888	108	hypothetical protein SINV_13332 [Solenop	1.0	0.833	0.877	9e-40
307189975	140	Mediator of RNA polymerase II transcript	1.0	0.642	0.866	4e-39

>gi|350415962|ref|XP_003490803.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22-like [Bombus impatiens]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 84/90 (93%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVNEAI QNSKLFRTKQ 
Sbjct: 51  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAIAQNSKLFRTKQA 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLASLRDDMAADLYDLEEEYYTSIYK 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48095446|ref|XP_394449.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22 [Apis mellifera] gi|380030014|ref|XP_003698655.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22-like [Apis florea]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 84/90 (93%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVNEAI QNSKLFRTKQ 
Sbjct: 51  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAIAQNSKLFRTKQA 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLASLRDDMAADLYDLEEEYYTSIYK 140

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848414|ref|XP_003699845.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22-like [Megachile rotundata]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 84/90 (93%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVNEAI QNSKLFRTKQ 
Sbjct: 81  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAIAQNSKLFRTKQA 140

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 141 ECDQKLASLRDDMAADLYDLEEEYYTSIYK 170

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711528|ref|XP_003394327.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22-like [Bombus terrestris]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 83/90 (92%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEM VRA NIVRAGESL+KLVSDIKQYLILNDFPSVNEAI QNSKLFRTKQ 
Sbjct: 51  MTQCEQDTYEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAIAQNSKLFRTKQA 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL NLRDDMAADLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLANLRDDMAADLYDLEEEYYTSIYK 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091902|ref|XP_971322.1| PREDICTED: similar to surfeit 5 [Tribolium castaneum] gi|270000800|gb|EEZ97247.1| hypothetical protein TcasGA2_TC011045 [Tribolium castaneum]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/90 (88%), Positives = 85/90 (94%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D +EMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQ 
Sbjct: 51  MTQCEQDTFEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQA 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKLM+LRDDMAADLYDLEEEYY+S+ K
Sbjct: 111 ECDQKLMSLRDDMAADLYDLEEEYYSSLNK 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019977|ref|XP_002430434.1| Surfeit locus protein, putative [Pediculus humanus corporis] gi|212515572|gb|EEB17696.1| Surfeit locus protein, putative [Pediculus humanus corporis]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 84/90 (93%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSD+KQYLILNDFPSVNEAI QNSK+FR KQ 
Sbjct: 51  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDMKQYLILNDFPSVNEAIGQNSKIFRQKQE 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKLMNLRDDMA+DLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLMNLRDDMASDLYDLEEEYYTSIYK 140

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028350|gb|EGI68397.1| Mediator of RNA polymerase II transcription subunit 22 [Acromyrmex echinatior]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 83/90 (92%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVN+AI QN KLFRTKQ 
Sbjct: 51  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNDAIIQNGKLFRTKQV 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLASLRDDMAADLYDLEEEYYTSIYK 140

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544070|ref|XP_001605267.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22-like [Nasonia vitripennis]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 83/90 (92%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA N+VRAGESL+KLVSDIKQYLILNDFPSVNEAITQNSKLFR KQ 
Sbjct: 51  MTQCEQDTYEMHVRAANMVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRAKQA 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYY S+YK
Sbjct: 111 ECDQKLASLRDDMAADLYDLEEEYYCSIYK 140

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785888|gb|EFZ12507.1| hypothetical protein SINV_13332 [Solenopsis invicta]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 83/90 (92%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEMHVRA NIVRAGESL+KLVSDIKQYLILNDFPSVN+AI QN KLFRTKQ 
Sbjct: 19  MTQCEQDTYEMHVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNDAIIQNGKLFRTKQV 78

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 79  ECDQKLASLRDDMAADLYDLEEEYYTSIYK 108

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189975|gb|EFN74211.1| Mediator of RNA polymerase II transcription subunit 22 [Camponotus floridanus]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 82/90 (91%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
           MTQCE D YEM VRA NIVRAGESL+KLVSDIKQYLILNDFPSVN+AI QN KLFRTKQ 
Sbjct: 51  MTQCEQDTYEMQVRASNIVRAGESLMKLVSDIKQYLILNDFPSVNDAIIQNGKLFRTKQV 110

Query: 61  ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
           ECDQKL +LRDDMAADLYDLEEEYYTS+YK
Sbjct: 111 ECDQKLASLRDDMAADLYDLEEEYYTSIYK 140

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
FB|FBgn0040339	143	MED22 "Mediator complex subuni	0.988	0.622	0.764	1.4e-32
UNIPROTKB|Q800L3	203	MED22 "Mediator of RNA polymer	0.977	0.433	0.704	7.1e-29
UNIPROTKB|Q15528	200	MED22 "Mediator of RNA polymer	0.955	0.43	0.720	1.2e-28
UNIPROTKB|Q5T8T8	137	MED22 "Mediator complex subuni	0.955	0.627	0.720	1.2e-28
ZFIN|ZDB-GENE-040625-156	203	med22 "mediator complex subuni	0.955	0.423	0.709	1.9e-28
UNIPROTKB|E7EN96	135	MED22 "Mediator of RNA polymer	0.933	0.622	0.726	3.9e-28
MGI|MGI:98446	200	Med22 "mediator complex subuni	0.955	0.43	0.709	3.9e-28
RGD|1564893	200	Med22 "mediator complex subuni	0.955	0.43	0.709	3.9e-28
UNIPROTKB|Q5E9K2	201	MED22 "Mediator of RNA polymer	0.955	0.427	0.709	6.4e-28
UNIPROTKB|E2QV33	204	MED22 "Uncharacterized protein	0.955	0.421	0.709	6.4e-28

FB|FBgn0040339 MED22 "Mediator complex subunit 22" [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 68/89 (76%), Positives = 78/89 (87%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQCE D  EM VRA N+VRAGESL+KLV+D+KQYLILNDF SVNEAIT NS+LFR  Q+E
Sbjct:    55 TQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEAITNNSQLFRNTQSE 114

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
             CD+KLM LRD+MA DLYDLEEEYYTS++K
Sbjct:   115 CDKKLMKLRDEMAMDLYDLEEEYYTSIFK 143

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;IC

GO:0016592 "mediator complex" evidence=IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;IC

GO:0007067 "mitosis" evidence=IMP

UNIPROTKB|Q800L3 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Gallus gallus (taxid:9031)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 62/88 (70%), Positives = 75/88 (85%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R+ Q E
Sbjct:    52 TQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTSVY 89
             CD+KL+ LRD+++ DLY+LEEEYY+S Y
Sbjct:   112 CDKKLIALRDEISIDLYELEEEYYSSSY 139

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|Q15528 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  RT Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLITLRDEISIDLYELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5T8T8 MED22 "Mediator complex subunit 22" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  RT Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLITLRDEISIDLYELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

ZFIN|ZDB-GENE-040625-156 med22 "mediator complex subunit 22" [Danio rerio (taxid:7955)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 61/86 (70%), Positives = 75/86 (87%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D +EMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI+  ++  RT Q E
Sbjct:    52 TQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL++LRD++A DLY+LEEEYY+S
Sbjct:   112 CDKKLISLRDEIAIDLYELEEEYYSS 137

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E7EN96 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/84 (72%), Positives = 72/84 (85%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  RT Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYY 85
             CD+KL+ LRD+++ DLY+LEEEYY
Sbjct:   112 CDRKLITLRDEISIDLYELEEEYY 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

MGI|MGI:98446 Med22 "mediator complex subunit 22" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLITLRDEVSIDLYELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=ISO

RGD|1564893 Med22 "mediator complex subunit 22" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLITLRDEVSIDLYELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA;ISO

UNIPROTKB|Q5E9K2 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Bos taurus (taxid:9913)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLIALRDEVSIDLYELEEEYYSS 137

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E2QV33 MED22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
             TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++  R  Q E
Sbjct:    52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111

Query:    62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
             CD+KL+ LRD+++ DLY+LEEEYY+S
Sbjct:   112 CDRKLIALRDEISIDLYELEEEYYSS 137

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q178E6	MED22_AEDAE	No assigned EC number	0.7777	1.0	0.6521	N/A	N/A
A0JPN6	MED22_RAT	No assigned EC number	0.6933	0.8333	0.375	yes	N/A
Q7QB45	MED22_ANOGA	No assigned EC number	0.7777	1.0	0.6521	yes	N/A
Q5E9K2	MED22_BOVIN	No assigned EC number	0.6933	0.8333	0.3731	yes	N/A
Q9V439	MED22_DROME	No assigned EC number	0.7640	0.9888	0.6223	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
pfam06179	108	pfam06179, Med22, Surfeit locus protein 5 subunit	2e-28
cd11684	392	cd11684, DHR2_DOCK, Dock Homology Region 2, a GEF	0.003

>gnl|CDD|203401 pfam06179, Med22, Surfeit locus protein 5 subunit 22 of Mediator complex

 Score = 98.1 bits (245), Expect = 2e-28
 Identities = 34/79 (43%), Positives = 49/79 (62%)

Query: 1   MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
            T    ++YEM VRA  +VRA E LLKL  +IK++ ILNDF  +NE I Q  + F ++Q 
Sbjct: 30  KTVAAQEVYEMEVRAAQLVRAVEDLLKLTREIKEFWILNDFSPLNEEIKQQEEEFESEQE 89

Query: 61  ECDQKLMNLRDDMAADLYD 79
           E DQ L  L + ++ +L +
Sbjct: 90  ETDQLLAELLEKLSEELIE 108

This family consists of several eukaryotic Surfeit locus protein 5 (SURF5) sequences. The human Surfeit locus has been mapped on chromosome 9q34.1. The locus includes six tightly clustered housekeeping genes (Surf1-6), and the gene organisation is similar in human, mouse and chicken Surfeit locus. The Med22 subunit of Mediator complex is part of the essential core head region. Length = 108

>gnl|CDD|212566 cd11684, DHR2_DOCK, Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 7  DLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKL 66
           L ++H   GN V A   LL         L                 L   +QT  ++K 
Sbjct: 9  KLADLHEERGNYVEAALCLLLHADLYAWDLKALVPAL-------AESLSFPEQTSFERKE 61

Query: 67 MNLRDDMAADLYD 79
             +   A DL+D
Sbjct: 62 ALYK--KAIDLFD 72

DOCK proteins comprise a family of atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate the small GTPases Rac and Cdc42 by exchanging bound GDP for free GTP. They are also called the CZH (CED-5, Dock180, and MBC-zizimin homology) family, after the first family members identified. Dock180 was first isolated as a binding partner for the adaptor protein Crk. The Caenorhabditis elegans protein, Ced-5, is essential for cell migration and phagocytosis, while the Drosophila ortholog, Myoblast city (MBC), is necessary for myoblast fusion and dorsal closure. DOCKs are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1 (or Dock180), 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1, and DHR-2 (also called CZH2 or Docker). This alignment model represents the DHR-2 domain of DOCK proteins, which contains the catalytic GEF activity for Rac and/or Cdc42. Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG3304|consensus	148		100.0
PF06179	109	Med22: Surfeit locus protein 5 subunit 22 of Media	99.89

>KOG3304|consensus

Probab=100.00  E-value=1.1e-44  Score=258.09  Aligned_cols=90  Identities=67%  Similarity=1.044  Sum_probs=88.7

Q ss_pred             ChhhHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy312            1 MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDL   80 (90)
Q Consensus         1 ~tq~~qe~fem~vRAa~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eL   80 (90)
                      +|||+||+|||+|||+|||||||||||||+|||||||||||+|+|++|++++.+|++.+++|+++++.|+||+|.+||||
T Consensus        57 ~tq~~q~a~eM~vRAa~mVrA~dsLlKLvsdLKqflIl~dFhsln~~I~q~~aq~~~t~~e~~r~l~~l~de~s~~L~eL  136 (148)
T KOG3304|consen   57 ATQGEQDAYEMHVRAANMVRAGDSLLKLVSDLKQFLILNDFHSLNEAIDQRNAQFRQTQEECDRKLITLRDEVSIDLYEL  136 (148)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccC
Q psy312           81 EEEYYTSVYK   90 (90)
Q Consensus        81 E~eYYsS~~k   90 (90)
                      |+|||+|.||
T Consensus       137 E~eyyss~~r  146 (148)
T KOG3304|consen  137 EEEYYSSAYR  146 (148)
T ss_pred             HHHHHHHHHh
Confidence            9999999985

>PF06179 Med22: Surfeit locus protein 5 subunit 22 of Mediator complex; PDB: 3R84_P 3RJ1_K

Probab=99.89  E-value=2.6e-24  Score=144.91  Aligned_cols=79  Identities=37%  Similarity=0.642  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy312            2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDL   80 (90)
Q Consensus         2 tq~~qe~fem~vRAa~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eL   80 (90)
                      ++++++.|+|++||++||||||+||+||++||+++|||||+++|+.++.+...++...++|++++..|+++++.+|++|
T Consensus        31 ~~~a~~~~~m~~~a~~lira~e~LL~Ltr~LKe~wll~d~~~~~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~el  109 (109)
T PF06179_consen   31 TQAAQESFQMEVRAAQLIRAAEDLLSLTRELKELWLLGDFPPLNEDIDEQEERLDQEQEEVDKLLNALRDELMRELAEL  109 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB-----------------TT------THHHHSTTTTTTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
4h63_V	135	Mediator of RNA polymerase II transcription subun;	99.68

>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.68  E-value=1.5e-18  Score=121.96  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy312            2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLE   81 (90)
Q Consensus         2 tq~~qe~fem~vRAa~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE   81 (90)
                      ++.+++.|+|++||++||||||+||+|+++||+++|||||+++|+.++.+..++++..+++++....|.+   ..+.++|
T Consensus        46 ~~~A~e~~~~~~~~~~~vra~e~LL~L~r~lKe~wllg~l~~~~e~~~~~e~~~e~~~~~~~~l~~~l~~---~~l~e~~  122 (135)
T 4h63_V           46 YTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLE---VSLIEPE  122 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCCCCSCCCHHHHHHHHHHHHTTTCC---CCSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHHHH---HhccCcc
Confidence            4568999999999999999999999999999999999999999999999998899999999988887776   4444555


Q ss_pred             HHHh
Q psy312           82 EEYY   85 (90)
Q Consensus        82 ~eYY   85 (90)
                      ..++
T Consensus       123 ~~e~  126 (135)
T 4h63_V          123 ASET  126 (135)
T ss_dssp             ----
T ss_pred             cccc
Confidence            4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00