Psyllid ID: psy3140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MTAIESFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRNR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccccccEEEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccccccccEEEEEEEcccccccHHHHccccccccEEEEEcccccHHHHHHHHHHHcHHHcccccEEEEEEEEcccccccEEEEEcEEEEcccccccccHcHHHccEEEccEEEEEEccccccc
Coil and Loop (DISEMBL)
MTAIESFVTSidektvdrektCPLLLRVFTnfgkhnnvsdfhngfppnqlQIYTWMDATLRELTNLIREvnpeaqqrgtcfyftlltpergtsrfhvrdigqticgqkgpddnktlQQCRFIIGDymdvkiltpkrnr
Flexible Loop (DISEMBL)
mtaiesfvtsidektvdrektCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREvnpeaqqrgTCFYFTLLTPERGTSRFHVRDIGQTicgqkgpddnkTLQQCRFIIgdymdvkiltpkrnr
Low Complexity Region (SEG)
MTAIESFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRNR
Disordered region (IsUnstruct)
**********I**KTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKIL******
Disordered Region (DISOPRED)
********************TCPLLLRVFTNFGKH************NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK***
Disordered Region (DISEMBL)
MTAIESFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRNR
Disordered Region (DISPRO)
**AIESFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAIESFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q09250	166	Probable histone deacetyl	yes	N/A	0.963	0.801	0.510	6e-36
Q9VEX9	150	Histone deacetylase compl	yes	N/A	0.971	0.893	0.510	3e-35
Q3T022	153	Histone deacetylase compl	no	N/A	0.971	0.875	0.510	9e-34
Q5RDT5	153	Histone deacetylase compl	yes	N/A	0.971	0.875	0.510	1e-33
O00422	153	Histone deacetylase compl	no	N/A	0.971	0.875	0.510	1e-33
O55128	153	Histone deacetylase compl	no	N/A	0.971	0.875	0.510	1e-33
O64644	152	Histone deacetylase compl	yes	N/A	0.833	0.756	0.475	4e-25
O94405	145	Uncharacterized protein C	yes	N/A	0.782	0.744	0.301	0.0005

>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 103/137 (75%), Gaps = 4/137 (2%)

Query: 6   SFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFH--NG--FPPNQLQIYTWMDATLR 61
           S VT   +K +DREK CP+LLRVF    +HN +S+++  NG   PP++LQ++TWMD +LR
Sbjct: 8   SQVTVGHDKPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLR 67

Query: 62  ELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF 121
           ELT+LI+EVNP+A+++GT F F ++  +RG+ R+ +RD+G T  G++G DDNKTLQQC+F
Sbjct: 68  ELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTNGERGIDDNKTLQQCKF 127

Query: 122 IIGDYMDVKILTPKRNR 138
            +GD++DV I  P + R
Sbjct: 128 EVGDFVDVAISLPSQGR 144

Acts in transcription repression. Involved in the tethering of the SIN3 complex to core histone proteins.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 102/141 (72%), Gaps = 7/141 (4%)

Query: 1   MTAIESFVTSIDEKT----VDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTW 55
           M  +ES +  ++EKT    +DREKTCP+LLRVF + G+H++VS++  G  P N+LQIYTW
Sbjct: 1   MANVESMI--VEEKTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMFGNVPTNELQIYTW 58

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
            DATL ELT+L+R+VNP+ +++GT F F ++ P   ++ F +R+IG T  GQKG DDNKT
Sbjct: 59  QDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCTGQKGIDDNKT 118

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           L Q +F IGD++D+ I  P R
Sbjct: 119 LAQAKFSIGDFLDISITPPNR 139

Involved in the tethering of the SIN3 complex to core histone proteins. Interacts with bicoid (bcd) to repress transcription of bicoid target genes in the anterior tip of the embryo; a process known as retraction. Interacts with Trl and binds to Polycomb response elements at the bithorax complex. May contribute to the regulation of other homeotic gene expressions.

Drosophila melanogaster (taxid: 7227)

>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Bos taurus (taxid: 9913)

>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Pongo abelii (taxid: 9601)

>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Homo sapiens (taxid: 9606)

>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Mus musculus (taxid: 10090)

>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 80/120 (66%), Gaps = 5/120 (4%)

Query: 16  VDREKTCPLLLRVFTNFGKHNNVSDF--HNGFPPNQLQIYTWMDATLRELTNLIREVNPE 73
           VDREKTCPLLLRVFT  G H+   D+      P +++QIYTW DA+LRELT+L++EV+  
Sbjct: 33  VDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVA 92

Query: 74  AQQRGTCFYFTLLTPERGTSRFHVRDIGQTIC--GQKGPDDNKTLQQCRFIIGDYMDVKI 131
           A++R     F  + P      ++VR++G+T+    +K PDD+KTL +  F IGDY+DV I
Sbjct: 93  ARRRNARLSFAFVYPN-NKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

Links the histone deacetylase complex to transcriptional repressors bound to chromatin. Involved in the tethering of the SIN3 complex to core histone proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O94405|YQFD_SCHPO Uncharacterized protein C126.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.13c PE=3 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 22  CPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREV----NPEAQQR 77
           CP L+ V+  F   N+V D      P+ +Q+Y W+  TL EL  LI +     N E +  
Sbjct: 23  CPFLISVYHQFQTKNHVLDIFEDVIPS-IQVYGWLTMTLYELGVLIADQLLLNNEETRHS 81

Query: 78  GTCFYFTLLTPERGTSRFHVRDIGQTIC--GQKGPDDNKTLQQCRFIIGDYMDVKI 131
                   +  ++   R   RD+G T+C    K    NK L++     GD +DV I
Sbjct: 82  EWSLQIRTIFYDKYKDRPIARDLG-TVCLHNPKLFQGNKLLKRTGIKCGDKIDVTI 136

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
350423855	153	PREDICTED: histone deacetylase complex s	0.978	0.882	0.582	5e-40
322796717	158	hypothetical protein SINV_07622 [Solenop	0.978	0.854	0.582	5e-40
307212690	155	Histone deacetylase complex subunit SAP1	0.978	0.870	0.582	6e-40
332019479	155	Histone deacetylase complex subunit SAP1	0.978	0.870	0.582	6e-40
340729001	174	PREDICTED: histone deacetylase complex s	0.971	0.770	0.586	7e-40
345487166	155	PREDICTED: histone deacetylase complex s	0.913	0.812	0.614	2e-39
345487168	169	PREDICTED: histone deacetylase complex s	0.913	0.745	0.614	3e-39
328793370	148	PREDICTED: histone deacetylase complex s	0.963	0.898	0.583	4e-39
307188459	148	Histone deacetylase complex subunit SAP1	0.913	0.851	0.606	1e-38
321479366	158	hypothetical protein DAPPUDRAFT_300088 [	0.905	0.791	0.595	2e-38

>gi|350423855|ref|XP_003493613.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Bombus impatiens] gi|380029354|ref|XP_003698340.1| PREDICTED: histone deacetylase complex subunit SAP18-like isoform 1 [Apis florea] gi|380029356|ref|XP_003698341.1| PREDICTED: histone deacetylase complex subunit SAP18-like isoform 2 [Apis florea] gi|383857188|ref|XP_003704087.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Megachile rotundata]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 103/139 (74%), Gaps = 4/139 (2%)

Query: 2   TAIESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMD 57
           +AIES V     + EK +DREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMD
Sbjct: 3   SAIESMVVDEKQLPEKPIDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMD 62

Query: 58  ATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQ 117
           ATLRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL 
Sbjct: 63  ATLREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLA 122

Query: 118 QCRFIIGDYMDVKILTPKR 136
           Q RF IGDY+D+ I  P R
Sbjct: 123 QARFTIGDYLDISITPPNR 141

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796717|gb|EFZ19150.1| hypothetical protein SINV_07622 [Solenopsis invicta]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 103/139 (74%), Gaps = 4/139 (2%)

Query: 2   TAIESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMD 57
           +A+ES V     + EK VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMD
Sbjct: 6   SALESMVVDEKQLPEKPVDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMD 65

Query: 58  ATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQ 117
           ATLRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL 
Sbjct: 66  ATLREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLA 125

Query: 118 QCRFIIGDYMDVKILTPKR 136
           Q RF IGDY+D+ I  P R
Sbjct: 126 QARFTIGDYLDISITPPNR 144

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212690|gb|EFN88381.1| Histone deacetylase complex subunit SAP18 [Harpegnathos saltator]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 103/139 (74%), Gaps = 4/139 (2%)

Query: 2   TAIESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMD 57
           +A+ES V     + EK VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMD
Sbjct: 3   SALESMVVDEKQLPEKPVDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMD 62

Query: 58  ATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQ 117
           ATLRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL 
Sbjct: 63  ATLREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLA 122

Query: 118 QCRFIIGDYMDVKILTPKR 136
           Q RF IGDY+D+ I  P R
Sbjct: 123 QARFTIGDYLDISITPPNR 141

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019479|gb|EGI59958.1| Histone deacetylase complex subunit SAP18 [Acromyrmex echinatior]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 103/139 (74%), Gaps = 4/139 (2%)

Query: 2   TAIESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMD 57
           +A+ES V     + EK VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMD
Sbjct: 3   SALESMVVDEKQLPEKPVDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMD 62

Query: 58  ATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQ 117
           ATLRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL 
Sbjct: 63  ATLREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLA 122

Query: 118 QCRFIIGDYMDVKILTPKR 136
           Q RF IGDY+D+ I  P R
Sbjct: 123 QARFTIGDYLDISITPPNR 141

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729001|ref|XP_003402799.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Bombus terrestris]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 102/138 (73%), Gaps = 4/138 (2%)

Query: 3   AIESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDA 58
           AIES V     + EK +DREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMDA
Sbjct: 25  AIESMVVDEKQLPEKPIDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMDA 84

Query: 59  TLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQ 118
           TLRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL Q
Sbjct: 85  TLREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLAQ 144

Query: 119 CRFIIGDYMDVKILTPKR 136
            RF IGDY+D+ I  P R
Sbjct: 145 ARFTIGDYLDISITPPNR 162

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487166|ref|XP_003425640.1| PREDICTED: histone deacetylase complex subunit SAP18-like isoform 2 [Nasonia vitripennis]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%), Gaps = 1/127 (0%)

Query: 11  IDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIRE 69
           I +K VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMDATLRE+T L++E
Sbjct: 16  IPDKPVDREKTCPLLLRVFCNTGRHHNIGEYTRGNVPSNELQIYTWMDATLREITALVKE 75

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129
           VNP+A+ +GT F F+L+TPE  TS + +R+IG T  GQKG DDNKTL Q RF IGDY+D+
Sbjct: 76  VNPDARSKGTYFEFSLVTPEVRTSGYRMREIGVTCSGQKGADDNKTLAQARFTIGDYLDI 135

Query: 130 KILTPKR 136
            I  P R
Sbjct: 136 SITPPNR 142

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487168|ref|XP_001600057.2| PREDICTED: histone deacetylase complex subunit SAP18-like isoform 1 [Nasonia vitripennis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%), Gaps = 1/127 (0%)

Query: 11  IDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIRE 69
           I +K VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMDATLRE+T L++E
Sbjct: 30  IPDKPVDREKTCPLLLRVFCNTGRHHNIGEYTRGNVPSNELQIYTWMDATLREITALVKE 89

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129
           VNP+A+ +GT F F+L+TPE  TS + +R+IG T  GQKG DDNKTL Q RF IGDY+D+
Sbjct: 90  VNPDARSKGTYFEFSLVTPEVRTSGYRMREIGVTCSGQKGADDNKTLAQARFTIGDYLDI 149

Query: 130 KILTPKR 136
            I  P R
Sbjct: 150 SITPPNR 156

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793370|ref|XP_003251869.1| PREDICTED: histone deacetylase complex subunit SAP18-like, partial [Apis mellifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 101/137 (73%), Gaps = 4/137 (2%)

Query: 4   IESFVT---SIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDAT 59
           IES V     + EK +DREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMDAT
Sbjct: 10  IESMVVDEKQLPEKPIDREKTCPLLLRVFCNTGRHHNIMEYSRGNVPSNELQIYTWMDAT 69

Query: 60  LRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQC 119
           LRE+T L++EVNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL Q 
Sbjct: 70  LREITGLVKEVNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLAQA 129

Query: 120 RFIIGDYMDVKILTPKR 136
           RF IGDY+D+ I  P R
Sbjct: 130 RFTIGDYLDISITPPNR 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188459|gb|EFN73208.1| Histone deacetylase complex subunit SAP18 [Camponotus floridanus]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 97/127 (76%), Gaps = 1/127 (0%)

Query: 11  IDEKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIRE 69
           + EK VDREKTCPLLLRVF N G+H+N+ ++  G  P N+LQIYTWMDATLRE+T L++E
Sbjct: 8   LPEKPVDREKTCPLLLRVFCNNGRHHNIMEYSRGNVPSNELQIYTWMDATLREITGLVKE 67

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129
           VNP+A+ +GT F F+L+TPE   S + +R+IG T  GQKG DDNKTL Q RF IGDY+D+
Sbjct: 68  VNPDARSKGTYFDFSLVTPELRNSGYRMREIGVTCSGQKGADDNKTLAQARFTIGDYLDI 127

Query: 130 KILTPKR 136
            I  P R
Sbjct: 128 SITPPNR 134

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479366|gb|EFX90322.1| hypothetical protein DAPPUDRAFT_300088 [Daphnia pulex]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%)

Query: 13  EKTVDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREVN 71
           EK+VDREKTCPLLLRVF   G+H+++ D+  G  P ++LQIYTWMDATL+E+T L+REVN
Sbjct: 21  EKSVDREKTCPLLLRVFCAMGRHHSLGDYARGSVPASELQIYTWMDATLQEITGLVREVN 80

Query: 72  PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKI 131
            EA++RGT F F  + P+R T     R+IG TI G++GPDD KTL+QCRF IGDY+D+ I
Sbjct: 81  YEARRRGTRFSFAQVFPDRSTLSMSRREIGSTISGERGPDDMKTLKQCRFTIGDYIDIAI 140

Query: 132 LTPKRN 137
             P RN
Sbjct: 141 TPPSRN 146

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0024491	150	Bin1 "Bicoid interacting prote	0.971	0.893	0.510	1.3e-34
UNIPROTKB|Q90ZH5	153	chSAP18 "Uncharacterized prote	0.971	0.875	0.510	1.1e-32
UNIPROTKB|G3X7E1	172	SAP18 "Histone deacetylase com	0.971	0.779	0.510	1.1e-32
UNIPROTKB|Q3T022	153	SAP18 "Histone deacetylase com	0.971	0.875	0.510	1.1e-32
UNIPROTKB|I3LF36	153	SAP18 "Uncharacterized protein	0.971	0.875	0.510	1.1e-32
UNIPROTKB|O00422	153	SAP18 "Histone deacetylase com	0.971	0.875	0.510	1.4e-32
RGD|1310388	153	Sap18 "Sin3-associated polypep	0.971	0.875	0.510	1.4e-32
TAIR|locus:2043704	152	SAP18 "SIN3 associated polypep	0.833	0.756	0.475	3.3e-24
GENEDB_PFALCIPARUM|MAL7P1.37	728	MAL7P1.37 "sin3 associated pol	0.927	0.175	0.333	1.6e-13
UNIPROTKB|Q8IBX6	728	MAL7P1.37 "Sin3 associated pol	0.927	0.175	0.333	1.6e-13

FB|FBgn0024491 Bin1 "Bicoid interacting protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 72/141 (51%), Positives = 102/141 (72%)

Query:     1 MTAIESFVTSIDEKT----VDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTW 55
             M  +ES +  ++EKT    +DREKTCP+LLRVF + G+H++VS++  G  P N+LQIYTW
Sbjct:     1 MANVESMI--VEEKTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMFGNVPTNELQIYTW 58

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
              DATL ELT+L+R+VNP+ +++GT F F ++ P   ++ F +R+IG T  GQKG DDNKT
Sbjct:    59 QDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCTGQKGIDDNKT 118

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             L Q +F IGD++D+ I  P R
Sbjct:   119 LAQAKFSIGDFLDISITPPNR 139

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003714 "transcription corepressor activity" evidence=IGI;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0016580 "Sin3 complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0006342 "chromatin silencing" evidence=IGI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|Q90ZH5 chSAP18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:     2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   122 LQSQKFQIGDYLDIAITPPNR 142

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|G3X7E1 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:    21 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 80

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    81 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 140

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   141 LQSQKFQIGDYLDIAITPPNR 161

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3T022 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:     2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   122 LQSQKFQIGDYLDIAITPPNR 142

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|I3LF36 SAP18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:     2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   122 LQSQKFQIGDYLDIAITPPNR 142

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O00422 SAP18 "Histone deacetylase complex subunit SAP18" [Homo sapiens (taxid:9606)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:     2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   122 LQSQKFQIGDYLDIAITPPNR 142

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|1310388 Sap18 "Sin3-associated polypeptide 18" [Rattus norvegicus (taxid:10116)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 72/141 (51%), Positives = 100/141 (70%)

Query:     3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
             A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct:     2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query:    56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
             MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct:    62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query:   116 LQQCRFIIGDYMDVKILTPKR 136
             LQ  +F IGDY+D+ I  P R
Sbjct:   122 LQSQKFQIGDYLDIAITPPNR 142

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2043704 SAP18 "SIN3 associated polypeptide P18" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/120 (47%), Positives = 80/120 (66%)

Query:    16 VDREKTCPLLLRVFTNFGKHNNVSDF--HNGFPPNQLQIYTWMDATLRELTNLIREVNPE 73
             VDREKTCPLLLRVFT  G H+   D+      P +++QIYTW DA+LRELT+L++EV+  
Sbjct:    33 VDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVA 92

Query:    74 AQQRGTCFYFTLLTPERGTSRFHVRDIGQTIC--GQKGPDDNKTLQQCRFIIGDYMDVKI 131
             A++R     F  + P      ++VR++G+T+    +K PDD+KTL +  F IGDY+DV I
Sbjct:    93 ARRRNARLSFAFVYPNN-KGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

GENEDB_PFALCIPARUM|MAL7P1.37 MAL7P1.37 "sin3 associated polypeptide p18-like protein" [Plasmodium falciparum (taxid:5833)]

 Score = 187 (70.9 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 45/135 (33%), Positives = 73/135 (54%)

Query:     6 SFVTSIDE-KTVDREKTCPLLLRVFTNFGKHNNVSDFH---NGFPPNQLQIYTWMDATLR 61
             S +  ID+   ++REKTCP LLR+F    K  NV D          N+LQIY W+D T+R
Sbjct:   597 SHMNGIDKIGIINREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMR 656

Query:    62 ELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF 121
             E+  L+++   +++QR   + F + + E+    F +  +  TI   K  +DNKTL    +
Sbjct:   657 EIVTLVKDFYKDSRQRNAQWVFKVFSYEKKKLTF-LSKVHSTIYNYK--EDNKTLLSLNY 713

Query:   122 IIGDYMDVKILTPKR 136
              IGD + + I+  ++
Sbjct:   714 EIGDIILLSIMLDRK 728

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|Q8IBX6 MAL7P1.37 "Sin3 associated polypeptide p18-like protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 187 (70.9 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 45/135 (33%), Positives = 73/135 (54%)

Query:     6 SFVTSIDE-KTVDREKTCPLLLRVFTNFGKHNNVSDFH---NGFPPNQLQIYTWMDATLR 61
             S +  ID+   ++REKTCP LLR+F    K  NV D          N+LQIY W+D T+R
Sbjct:   597 SHMNGIDKIGIINREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMR 656

Query:    62 ELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF 121
             E+  L+++   +++QR   + F + + E+    F +  +  TI   K  +DNKTL    +
Sbjct:   657 EIVTLVKDFYKDSRQRNAQWVFKVFSYEKKKLTF-LSKVHSTIYNYK--EDNKTLLSLNY 713

Query:   122 IIGDYMDVKILTPKR 136
              IGD + + I+  ++
Sbjct:   714 EIGDIILLSIMLDRK 728

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94405	YQFD_SCHPO	No assigned EC number	0.3017	0.7826	0.7448	yes	N/A
O00422	SAP18_HUMAN	No assigned EC number	0.5106	0.9710	0.8758	no	N/A
O64644	SAP18_ARATH	No assigned EC number	0.475	0.8333	0.7565	yes	N/A
Q09250	SAP18_CAEEL	No assigned EC number	0.5109	0.9637	0.8012	yes	N/A
Q9VEX9	SAP18_DROME	No assigned EC number	0.5106	0.9710	0.8933	yes	N/A
Q3T022	SAP18_BOVIN	No assigned EC number	0.5106	0.9710	0.8758	no	N/A
Q5RDT5	SAP18_PONAB	No assigned EC number	0.5106	0.9710	0.8758	yes	N/A
O55128	SAP18_MOUSE	No assigned EC number	0.5106	0.9710	0.8758	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
pfam06487	121	pfam06487, SAP18, Sin3 associated polypeptide p18	2e-54

>gnl|CDD|219057 pfam06487, SAP18, Sin3 associated polypeptide p18 (SAP18)

 Score =  166 bits (422), Expect = 2e-54
 Identities = 70/120 (58%), Positives = 90/120 (75%), Gaps = 1/120 (0%)

Query: 13  EKTVDREKTCPLLLRVFTNFGKHNNVSDF-HNGFPPNQLQIYTWMDATLRELTNLIREVN 71
            K +DREKTCP LLRVF   G+H+++SDF     P N+LQIYTW+DATLRELT LI++V 
Sbjct: 2   IKPIDREKTCPFLLRVFYKNGRHHSLSDFSSGNVPSNELQIYTWLDATLRELTTLIKDVL 61

Query: 72  PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKI 131
           P A++RGT F F L+ P++   R+  +D+G  I GQKGPDDNKTLQ  +F+IGDY+DV I
Sbjct: 62  PPARRRGTRFSFRLVYPDKKRGRYLSKDLGSVISGQKGPDDNKTLQDAKFVIGDYLDVAI 121

This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex which is responsible for the repression of transcription via the modification of histone polypeptides. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PF06487	120	SAP18: Sin3 associated polypeptide p18 (SAP18); In	100.0
KOG3391|consensus	151		100.0
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	85.28
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	85.15
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	84.82

>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences

Probab=100.00  E-value=4e-63  Score=369.49  Aligned_cols=119  Identities=56%  Similarity=1.038  Sum_probs=97.9

Q ss_pred             CCCCCccCCCccEEEEeecCCCCCCCCCCCC-CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCC
Q psy3140          13 EKTVDREKTCPLLLRVFTNFGKHNNVSDFHN-GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERG   91 (138)
Q Consensus        13 ~~~idRektcPfLLRvF~~~g~~h~~~eF~~-~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~   91 (138)
                      +++|||||||||||||||++|+||+++||+. ++|+||||||||||||||||++|||+++|++|++||+|+|++||||.+
T Consensus         1 ~~~idRektcPfLLRvF~~~g~~h~~~dF~~~~~P~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~   80 (120)
T PF06487_consen    1 PKPIDREKTCPFLLRVFYRNGRHHRLDDFSRGSLPRNELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTR   80 (120)
T ss_dssp             -----CCCS--EEEEEEESSSS---GGGCGCCS-TTTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTT
T ss_pred             CCCcccCCCCCeEEEEEEecCCCCCHHHccCCCCCcCeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCC
Confidence            3689999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEe
Q psy3140          92 TSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKI  131 (138)
Q Consensus        92 ~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI  131 (138)
                      +++|.+||||+|++|.++.|++|||++++|+|||||||||
T Consensus        81 ~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDyidvaI  120 (120)
T PF06487_consen   81 SGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDYIDVAI  120 (120)
T ss_dssp             TTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-EEEEEE
T ss_pred             CCceeeecCCeEECCCCCCCcccCHhhCCcccCCEEEEeC
Confidence            9999999999999999999999999999999999999998

SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.

>KOG3391|consensus

Probab=100.00  E-value=1.9e-61  Score=367.91  Aligned_cols=137  Identities=54%  Similarity=0.937  Sum_probs=130.9

Q ss_pred             CCceeeeeecc--CCCCCCccCCCccEEEEeec-CCCCCCCCCCCC-CCCCCceeeeecCCCCHHHHHHHHHhhCccccC
Q psy3140           1 MTAIESFVTSI--DEKTVDREKTCPLLLRVFTN-FGKHNNVSDFHN-GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQ   76 (138)
Q Consensus         1 ~~~~~~~~~~~--~~~~idRektcPfLLRvF~~-~g~~h~~~eF~~-~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~   76 (138)
                      ||..+++++++  ..++||||||||||||||++ +|+||.++||+. ++|++||||||||||||+||+.||||++|++|+
T Consensus         1 Mav~~~vsq~~~~~~~piDrektCPlLlrVf~~~~g~hH~~def~~g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~   80 (151)
T KOG3391|consen    1 MAVGSSVSQEPELSKKPIDREKTCPLLLRVFTQFNGRHHVMDEFEDGNVPSSELQIYTWMDATLRELTSLVKEVNPEARK   80 (151)
T ss_pred             CCccccccccCcccCCcccccccCcceeeeeeecCCCCcchhhhhcCCCCchheeEeehhhhhHHHHHHHHHHcCHHHhc
Confidence            88888888873  33599999999999999998 899999999999 999999999999999999999999999999999


Q ss_pred             CCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCCCC
Q psy3140          77 RGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRN  137 (138)
Q Consensus        77 ~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~  137 (138)
                      +||.|+||+||||.++++|.+||+|++++|+++.||+|||++++|+|||||||||.||++.
T Consensus        81 kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~~  141 (151)
T KOG3391|consen   81 KGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNRR  141 (151)
T ss_pred             cCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccceEEEEecCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999875

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=85.28  E-value=1  Score=29.25  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      ++++...++.|++.|.....+...-....    .|+++| |           |..      -++++|+++++..-||.|+
T Consensus        12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~----~~~l~f-d-----------G~~------L~~~~T~~~~~ied~d~Id   69 (72)
T PF11976_consen   12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEE----SIRLIF-D-----------GKR------LDPNDTPEDLGIEDGDTID   69 (72)
T ss_dssp             EEEEEEETTSCCHHHHHHHHHHHTTTT-T----TEEEEE-T-----------TEE------E-TTSCHHHHT-STTEEEE
T ss_pred             EEEEEECCCCcHHHHHHHHHHhhCCCccc----eEEEEE-C-----------CEE------cCCCCCHHHCCCCCCCEEE
Confidence            68888899999999998887754322212    233443 1           111      1467999999999999999


Q ss_pred             EEe
Q psy3140         129 VKI  131 (138)
Q Consensus       129 vaI  131 (138)
                      |.|
T Consensus        70 v~I   72 (72)
T PF11976_consen   70 VII   72 (72)
T ss_dssp             EE-
T ss_pred             EEC
Confidence            986

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=85.15  E-value=2.6  Score=28.97  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=43.7

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      ++.+-.=++.||+.|...+.+..--.. .    .++++|-..            -      -+++.|+++++.+-||.|+
T Consensus        23 ~~~~~v~~~~~l~~l~~~y~~~~gi~~-~----~~rf~f~G~------------~------L~~~~T~~~l~m~d~d~I~   79 (87)
T cd01763          23 EVFFKIKRSTPLKKLMEAYCQRQGLSM-N----SVRFLFDGQ------------R------IRDNQTPDDLGMEDGDEIE   79 (87)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHhCCCc-c----ceEEEECCe------------E------CCCCCCHHHcCCCCCCEEE
Confidence            456666689999999998887653222 2    455565211            0      1467899999999999999


Q ss_pred             EEeeC
Q psy3140         129 VKILT  133 (138)
Q Consensus       129 vaI~p  133 (138)
                      +.+..
T Consensus        80 v~l~l   84 (87)
T cd01763          80 VMLEQ   84 (87)
T ss_pred             EEEec
Confidence            98753

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=84.82  E-value=2.6  Score=26.91  Aligned_cols=62  Identities=21%  Similarity=0.190  Sum_probs=44.9

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      .+.+-...+.|+.+|=..|.+...-.. .    ..+++|.    |        ..      -+|++||.++++..|+.|.
T Consensus         7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~-~----~~~L~~~----G--------~~------L~d~~tL~~~~i~~~~~I~   63 (69)
T PF00240_consen    7 TFTLEVDPDDTVADLKQKIAEETGIPP-E----QQRLIYN----G--------KE------LDDDKTLSDYGIKDGSTIH   63 (69)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHHTSTG-G----GEEEEET----T--------EE------ESTTSBTGGGTTSTTEEEE
T ss_pred             EEEEEECCCCCHHHhhhhccccccccc-c----cceeeee----e--------ec------ccCcCcHHHcCCCCCCEEE
Confidence            577888899999999999988554211 1    1344441    1        11      1589999999999999999


Q ss_pred             EEeeC
Q psy3140         129 VKILT  133 (138)
Q Consensus       129 vaI~p  133 (138)
                      +.+.|
T Consensus        64 l~~k~   68 (69)
T PF00240_consen   64 LVIKP   68 (69)
T ss_dssp             EEESS
T ss_pred             EEEec
Confidence            98765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
4a90_A	143	Crystal Structure Of Mouse Sap18 Residues 1-143 Len		1e-34
4a8x_C	130	Structure Of The Core Asap Complex Length = 130		7e-34
2hde_A	148	Solution Structure Of Human Sap18 Length = 148		3e-33
4a6q_A	143	Crystal Structure Of Mouse Sap18 Residues 6-143 Len		9e-33

>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143 Length = 143

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61
Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT 121
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142

>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex Length = 130

Iteration: 1
 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTWMDATL+ELT+L++EV
Sbjct: 4   EKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEV 63
Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 64  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIA 123
Query: 131 ILTPKR 136
           I  P R
Sbjct: 124 ITPPNR 129

>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18 Length = 148

Iteration: 1
 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 92/126 (73%), Gaps = 2/126 (1%)
Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKT PLLLRVFT N G+H+ + +F  G  P ++LQIYTWMDATL+ELT+L++EV
Sbjct: 16  EKPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEV 75
Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 76  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIA 135
Query: 131 ILTPKR 136
           I  P R
Sbjct: 136 ITPPNR 141

>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143 Length = 143

Iteration: 1
 Score =  135 bits (339), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 90/126 (71%), Gaps = 2/126 (1%)
Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKTCPLLLRVFT N G+H+   +F  G  P ++LQIYTW DATL+ELT+L++EV
Sbjct: 17  EKPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEV 76
Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T  G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 77  YPEARKKGTHFNFAIVFXDLKRPGYRVKEIGSTXSGRKGTDDSXTLQSQKFQIGDYLDIA 136
Query: 131 ILTPKR 136
           I  P R
Sbjct: 137 ITPPNR 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	2e-54

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C Length = 143

 Score =  167 bits (423), Expect = 2e-54
 Identities = 68/138 (49%), Positives = 96/138 (69%), Gaps = 2/138 (1%)

Query: 1   MTAIESFVTSIDEKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDA 58
           M   +  +    EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTWMDA
Sbjct: 5   MRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDA 64

Query: 59  TLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQ 118
           TL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ TLQ 
Sbjct: 65  TLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQS 124

Query: 119 CRFIIGDYMDVKILTPKR 136
            +F IGDY+D+ I  P R
Sbjct: 125 QKFQIGDYLDIAITPPNR 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	100.0
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	87.28
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	85.15
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	84.26
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	83.06
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	82.68

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C

Probab=100.00  E-value=2.2e-67  Score=401.28  Aligned_cols=127  Identities=51%  Similarity=0.927  Sum_probs=124.1

Q ss_pred             cCCCCCCccCCCccEEEEeecC-CCCCCCCCCCC-CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEec
Q psy3140          11 IDEKTVDREKTCPLLLRVFTNF-GKHNNVSDFHN-GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTP   88 (138)
Q Consensus        11 ~~~~~idRektcPfLLRvF~~~-g~~h~~~eF~~-~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~Vyp   88 (138)
                      ++.++|||||||||||||||++ |+||+++||+. ++|+||||||||||||||||++|||+++|++|++||+|+|++|||
T Consensus        15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vyp   94 (143)
T 4a6q_A           15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFM   94 (143)
T ss_dssp             CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGCTTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEE
T ss_pred             CCCCCccccCCCCeEEEEEecCCCCCCCHHHccCCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcc
Confidence            5788999999999999999999 79999999998 899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCCCC
Q psy3140          89 ERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRN  137 (138)
Q Consensus        89 D~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~  137 (138)
                      |+++++|.+||||+|++|+++.||+|||++++|+|||||||||+||++|
T Consensus        95 D~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~  143 (143)
T 4a6q_A           95 DLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRA  143 (143)
T ss_dssp             CSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEEEEECGGGC
T ss_pred             cCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEEEEeCCCCC
Confidence            9999999999999999999999999999999999999999999999986

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.28  E-value=2  Score=26.96  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=42.7

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      .+.+-...++|+.||-..|.+..- .+...-    +++|.            |..      -+|++||++++...|+-|.
T Consensus        19 ~~~~~v~~~~tV~~LK~~i~~~~~-i~~~~q----rL~~~------------gk~------L~d~~tL~~~~i~~g~~i~   75 (81)
T 2dzi_A           19 ECSLQVPEDELVSTLKQLVSEKLN-VPVRQQ----RLLFK------------GKA------LADGKRLSDYSIGPNSKLN   75 (81)
T ss_dssp             EEEEEECSSCBHHHHHHHHHHHTC-CCTTTC----EEEET------------TEE------CCTTSBGGGGTCCSSBCCE
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHC-cCHHHE----EEEEC------------CeE------CCCCCcHHHcCCCCCCEEE
Confidence            345566789999999999987542 111112    23331            111      1467999999999999999


Q ss_pred             EEeeCC
Q psy3140         129 VKILTP  134 (138)
Q Consensus       129 vaI~pP  134 (138)
                      +.+.||
T Consensus        76 l~~~~~   81 (81)
T 2dzi_A           76 LVVKPL   81 (81)
T ss_dssp             EECCCC
T ss_pred             EEEeCC
Confidence            988775

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=85.15  E-value=4  Score=25.83  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY  126 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy  126 (138)
                      .+.+-...++|+.||-..|.+..  ...+...    .+++|.    |        ..      -+|++||++++...|+.
T Consensus        17 ~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~----qrLi~~----G--------k~------L~D~~tL~~~~i~~g~~   74 (85)
T 2wyq_A           17 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG----QKLIYA----G--------KI------LSDDVPIRDYRIDEKNF   74 (85)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG----EEEEET----T--------EE------CCTTSBGGGGCCCTTSE
T ss_pred             EEEEEECCCCCHHHHHHHHHhhccccCCCHHH----eEEEEC----C--------EE------CcCCCCHHHcCCCCCCE
Confidence            34555668999999999998862  1111111    234441    1        11      24679999999999999


Q ss_pred             EEEEeeCCC
Q psy3140         127 MDVKILTPK  135 (138)
Q Consensus       127 idvaI~pP~  135 (138)
                      |.+.+.+|.
T Consensus        75 i~l~~~~~~   83 (85)
T 2wyq_A           75 VVVMVTKTK   83 (85)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEcCCC
Confidence            999998774

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=84.26  E-value=5.1  Score=26.46  Aligned_cols=66  Identities=17%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCc--cccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNP--EAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY  126 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p--~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy  126 (138)
                      .+.|-...+.|+.||-..|.+...  ..+...    .+++|.    |        ..      -+|++||++++...|+.
T Consensus        12 ~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~----qrLi~~----G--------k~------L~D~~tL~~ygI~~g~~   69 (95)
T 1uel_A           12 TFKIDIDPEETVKALKEKIESEKGKDAFPVAG----QKLIYA----G--------KI------LNDDTALKEYKIDEKNF   69 (95)
T ss_dssp             EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTT----EEEEET----T--------EE------CCTTSBGGGGTCCSSSE
T ss_pred             EEEEEECCCCHHHHHHHHHHhhcccCCCChhh----EEEEEC----C--------EE------CCCcCcHHHCCCCCCCE
Confidence            345556788999999999988631  111112    234441    1        11      24679999999999999


Q ss_pred             EEEEeeCCCC
Q psy3140         127 MDVKILTPKR  136 (138)
Q Consensus       127 idvaI~pP~~  136 (138)
                      |.+.+..|..
T Consensus        70 i~l~~~~~~~   79 (95)
T 1uel_A           70 VVVMVTKPKA   79 (95)
T ss_dssp             EEEEESSCCC
T ss_pred             EEEEEeCCCC
Confidence            9999987754

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=83.06  E-value=4.5  Score=25.47  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY  126 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy  126 (138)
                      .+.|-.-.++|+.||-..|.+..  |..+       .+++|..        +.          -+|++||+++++..|+-
T Consensus        15 ~~~~~v~~~~tV~~lK~~i~~~~~ip~~~-------qrL~~~g--------~~----------L~d~~tL~~~~i~~~~~   69 (85)
T 3n3k_B           15 TIILEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFAG--------KQ----------LEDGRTLSDYNIHNHSA   69 (85)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHCCCGGG-------EEEEETB--------EE----------CCTTCBTTTTTCCTTCE
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHCCCHHH-------EEEEECC--------eE----------CCCCCCHHHCCCCCCCE
Confidence            35555668899999999998753  2221       3566522        11          24678999999999999


Q ss_pred             EEEEeeCCC
Q psy3140         127 MDVKILTPK  135 (138)
Q Consensus       127 idvaI~pP~  135 (138)
                      |.+.+....
T Consensus        70 i~l~~rl~G   78 (85)
T 3n3k_B           70 LYLLLKLRG   78 (85)
T ss_dssp             EEEEECCC-
T ss_pred             EEEEEeccC
Confidence            999887653

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=82.68  E-value=5.6  Score=27.50  Aligned_cols=80  Identities=11%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             CCCCCCCCCC---CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCC
Q psy3140          34 KHNNVSDFHN---GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGP  110 (138)
Q Consensus        34 ~~h~~~eF~~---~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~  110 (138)
                      .||.-.||..   .+....+.|-...++|+.+|-..|.+..- .+...    .+++|.            |..      -
T Consensus         3 ~~~~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~------------Gk~------L   59 (114)
T 2kdi_A            3 HHHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQ----QRLIWA------------GKQ------L   59 (114)
T ss_dssp             CSCCCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGG----EEEEET------------TEE------C
T ss_pred             ccccCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC-cChHH----EEEEEC------------CEE------C
Confidence            3566677775   44445677777899999999999987531 11111    133431            111      2


Q ss_pred             CcccccccCCCCCCcEEEEEeeCCCC
Q psy3140         111 DDNKTLQQCRFIIGDYMDVKILTPKR  136 (138)
Q Consensus       111 dd~kTL~~~rF~iGDyidvaI~pP~~  136 (138)
                      +|++||++++...|+.|.+.+.++..
T Consensus        60 ~D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A           60 EDGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            47899999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	89.38
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	86.06
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	84.28
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	81.44

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.075  Score=33.86  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             CCccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeec
Q psy3140          21 TCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDI  100 (138)
Q Consensus        21 tcPfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdl  100 (138)
                      .-|..+++++++..             +...+....++|+.+|-..|.+..--...     ..+++|.    |       
T Consensus         3 ~~~~~i~I~Vkt~~-------------~~~~~~V~~~~tV~~lK~~i~~~~gi~~~-----~qrL~~~----G-------   53 (84)
T d1yqba1           3 GSPHLIKVTVKTPK-------------DKEDFSVTDTCTIQQLKEEISQRFKAHPD-----QLVLIFA----G-------   53 (84)
T ss_dssp             CCTTEEEEEEECSS-------------CEEEEEEETTCBHHHHHHHHHHHHTCCGG-----GEEEEET----T-------
T ss_pred             CCCCEEEEEEEcCC-------------CcEEEEECCCCcHHHHHHHHHHHHCcCch-----hEEEEEe----e-------
Confidence            35788999998742             34557778999999999999875422111     1345551    1       


Q ss_pred             ceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCCCC
Q psy3140         101 GQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRN  137 (138)
Q Consensus       101 Gsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~  137 (138)
                            +. -+|++||++++...|+-|.+-+.+|.++
T Consensus        54 ------k~-L~D~~tL~~y~i~~gsti~lv~r~~~~a   83 (84)
T d1yqba1          54 ------KI-LKDPDSLAQCGVRDGLTVHLVIKRQHRA   83 (84)
T ss_dssp             ------EE-CCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             ------ee-ccccCcHHHcCCCCCCEEEEEECCCCCC
Confidence                  11 2478999999999999999999988764

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=1.3  Score=28.63  Aligned_cols=76  Identities=14%  Similarity=0.155  Sum_probs=51.8

Q ss_pred             CCCccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeee
Q psy3140          20 KTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRD   99 (138)
Q Consensus        20 ktcPfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rd   99 (138)
                      ..-|-+++|++++..             +...|-.+.++|+.+|=..|.+..--.. .    ..+++|    +|+     
T Consensus        27 ~~~~~~i~V~Vk~~~-------------~~~~i~V~~~~tV~~LK~~I~~~~gi~~-~----~qrLi~----~Gk-----   79 (103)
T d1j8ca_          27 PAEPKIIKVTVKTPK-------------EKEEFAVPENSSVQQFKEAISKRFKSQT-D----QLVLIF----AGK-----   79 (103)
T ss_dssp             CCCCCCEEEEEECSS-------------CEEEEEECTTCCHHHHHHHHHHHHCSCS-S----SEEEEE----TTE-----
T ss_pred             CCCCCeEEEEEECCC-------------ccEEEEECCCChHHHHHHHHHHHHCcCH-H----Heeeee----eee-----
Confidence            345668888888632             2345677899999999999988542211 1    145555    111     


Q ss_pred             cceeeeCCCCCCcccccccCCCCCCcEEEEEe
Q psy3140         100 IGQTICGQKGPDDNKTLQQCRFIIGDYMDVKI  131 (138)
Q Consensus       100 lGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI  131 (138)
                         +      -+|++||++++.+.|+-|.+.+
T Consensus        80 ---~------L~D~~tL~~~~I~~g~~I~lvl  102 (103)
T d1j8ca_          80 ---I------LKDQDTLIQHGIHDGLTVHLVI  102 (103)
T ss_dssp             ---E------ESTTSCGGGTTCSSSEEEEEEE
T ss_pred             ---c------ccCCCcHHHcCCCCCCEEEEEE
Confidence               1      1367899999999999998765

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.06  E-value=0.28  Score=32.14  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=44.9

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      ++.|=.=.+.|..+|-..|.++-++ +       .++||                 .|+--.||.+||.+++...|+.|-
T Consensus        19 ~~~v~v~~~~TV~~lK~~i~~~~~~-~-------qrLi~-----------------~Gk~L~dd~~tL~~y~i~~g~~v~   73 (95)
T d1wiaa_          19 EELAVARPEDTVGTLKSKYFPGQES-Q-------MKLIY-----------------QGRLLQDPARTLSSLNITNNCVIH   73 (95)
T ss_dssp             EEEEEECSSSBHHHHHHHHSSSTTT-T-------CEEEE-----------------TTEECCCSSCBTTTTTCCTTEEEE
T ss_pred             EEEEEECCcCcHHHHHHHHhcCCcc-e-------eEEEE-----------------CCEEcccCCCCHHHcCCCCCCEEE
Confidence            4445555788999998887644221 1       24444                 233335788999999999999999


Q ss_pred             EEeeCCCCC
Q psy3140         129 VKILTPKRN  137 (138)
Q Consensus       129 vaI~pP~~~  137 (138)
                      |.+.+|...
T Consensus        74 l~~~~~~~~   82 (95)
T d1wiaa_          74 CHRSPPGAA   82 (95)
T ss_dssp             EECCCCCCC
T ss_pred             EEEcCCCCC
Confidence            999888753

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.28  E-value=1.5  Score=29.21  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             ecCCCCHHHHHHHHHhhCccccC--CCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCc------
Q psy3140          54 TWMDATLRELTNLIREVNPEAQQ--RGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGD------  125 (138)
Q Consensus        54 tW~d~TLrEL~~Llk~~~p~~r~--~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGD------  125 (138)
                      -=.+.|..+|-.+|.+..|....  +-+--..|+||    +             |+- -+|++||.+++..-|+      
T Consensus        25 v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf----~-------------Gk~-L~D~~tL~dy~i~~g~~~~~~~   86 (101)
T d1se9a_          25 FPDATTVSALKETVISEWPREKENGPKTVKEVKLIS----A-------------GKV-LENSKTVKDYRSPVSNLAGAVT   86 (101)
T ss_dssp             ECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE----T-------------TEE-CCTTSBGGGGSCCTTSCTTCCE
T ss_pred             cCccCHHHHHHHHHHHhccccccCCCCCcccEEEEE----C-------------CeE-ecCCCCHHHcCCCCCCcCCCce
Confidence            33688999999999988775321  00111244554    2             221 2588999999999999      


Q ss_pred             EEEEEeeCCCCC
Q psy3140         126 YMDVKILTPKRN  137 (138)
Q Consensus       126 yidvaI~pP~~~  137 (138)
                      -|=+.|.||.+.
T Consensus        87 tmHlVvrpp~~~   98 (101)
T d1se9a_          87 TMHVIIQAPVTE   98 (101)
T ss_dssp             EEEEEECCCSSC
T ss_pred             EEEEEeCCCCCc
Confidence            788888898764

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.44  E-value=3.9  Score=24.70  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140          49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD  128 (138)
Q Consensus        49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid  128 (138)
                      ++.|-.++++|..+|=..|.+..+...-+-.  ..+++|-    |             +. -+|++||++++...|+.|-
T Consensus        14 ~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~--~qrLi~~----G-------------k~-L~D~~tL~~y~I~~~s~i~   73 (77)
T d1oqya4          14 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVA--GQKLIYA----G-------------KI-LSDDVPIRDYRIDEKNFVV   73 (77)
T ss_dssp             EEEECCCTTCBHHHHHHHHHHHTCSSSCCST--EEEEESS----S-------------SE-ECSSSBTTTTCCCTTSCEE
T ss_pred             EEEEEECCCCcHHHHHHHHHHhcCCCCCChH--HEEeEEC----C-------------cC-ccCCCcHHHcCCCCCCEEE
Confidence            5667778999999999999886542100000  2355551    2             11 1478999999999999997


Q ss_pred             EEe
Q psy3140         129 VKI  131 (138)
Q Consensus       129 vaI  131 (138)
                      |-+
T Consensus        74 ~~v   76 (77)
T d1oqya4          74 VMV   76 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755