Psyllid ID: psy3157
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 822 | 2.2.26 [Sep-21-2011] | |||||||
| Q8T9B6 | 180 | LDLR chaperone boca OS=Dr | yes | N/A | 0.122 | 0.561 | 0.745 | 1e-40 | |
| Q5ZKK4 | 220 | LDLR chaperone MESD OS=Ga | yes | N/A | 0.113 | 0.422 | 0.567 | 5e-29 | |
| A1L243 | 206 | LDLR chaperone MESD OS=Da | no | N/A | 0.122 | 0.490 | 0.554 | 6e-29 | |
| Q14696 | 234 | LDLR chaperone MESD OS=Ho | yes | N/A | 0.114 | 0.401 | 0.567 | 1e-28 | |
| Q9ERE7 | 224 | LDLR chaperone MESD OS=Mu | yes | N/A | 0.114 | 0.419 | 0.556 | 2e-28 | |
| Q5U2R7 | 224 | LDLR chaperone MESD OS=Ra | yes | N/A | 0.114 | 0.419 | 0.546 | 2e-28 | |
| Q3T0U1 | 232 | LDLR chaperone MESD OS=Bo | yes | N/A | 0.114 | 0.405 | 0.556 | 2e-28 | |
| Q5R6F1 | 234 | LDLR chaperone MESD OS=Po | yes | N/A | 0.114 | 0.401 | 0.556 | 3e-28 | |
| Q8C0T7 | 466 | Major facilitator superfa | no | N/A | 0.189 | 0.334 | 0.333 | 7e-19 | |
| Q8NBP5 | 474 | Major facilitator superfa | no | N/A | 0.193 | 0.335 | 0.308 | 9e-17 |
| >sp|Q8T9B6|MESD_DROME LDLR chaperone boca OS=Drosophila melanogaster GN=boca PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/102 (74%), Positives = 91/102 (89%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPG 172
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wg pathway, since some LDLRs are coreceptors for the canonical Wnt pathway. Drosophila melanogaster (taxid: 7227) |
| >sp|Q5ZKK4|MESD_CHICK LDLR chaperone MESD OS=Gallus gallus GN=MESDC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/97 (56%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LKL+KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V +R
Sbjct: 81 DPGKPESILKLTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSNR 140
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DG AW+ KD+L+ QERC VT+E +VYPGK
Sbjct: 141 AIFMLRDGGYAWEIKDFLISQERCADVTLEGQVYPGK 177
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway, since some LDLRs are coreceptors for the canonical Wnt pathway. Gallus gallus (taxid: 9031) |
| >sp|A1L243|MESD_DANRE LDLR chaperone MESD OS=Danio rerio GN=mesdc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 75/101 (74%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PE LLK+SKKG+TLMVF SV G+PT E E IT LWQ SLFN++ +R++V +R
Sbjct: 77 DASKPEELLKMSKKGKTLMVFASVSGNPTEKETEEITGLWQGSLFNANYDVQRFVVGSNR 136
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
IF+ +DGS AW+ KD+LV Q+RC+ VT+E +V+PGK K+
Sbjct: 137 VIFMLRDGSYAWEIKDFLVSQDRCEDVTVEGQVFPGKNAKK 177
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway, since some LDLRs are coreceptors for the canonical Wnt pathway. Danio rerio (taxid: 7955) |
| >sp|Q14696|MESD_HUMAN LDLR chaperone MESD OS=Homo sapiens GN=MESDC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/97 (56%), Positives = 73/97 (75%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G PT E E IT LWQ SLFN++ +R++V R
Sbjct: 97 DPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 156
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E +VYPGK
Sbjct: 157 AIFMLRDGSYAWEIKDFLVGQDRCADVTLEGQVYPGK 193
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway through chaperoning the coreceptors of the canonical Wnt pathway, LRP5 and LRP6, to the plasma membrane. Essential for specification of embryonic polarity and mesoderm induction. Homo sapiens (taxid: 9606) |
| >sp|Q9ERE7|MESD_MOUSE LDLR chaperone MESD OS=Mus musculus GN=Mesdc2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 88 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 147
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 148 AIFMLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGK 184
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway through chaperoning the coreceptors of the canonical Wnt pathway, LRP5 and LRP6, to the plasma membrane. Essential for specification of embryonic polarity and mesoderm induction. Mus musculus (taxid: 10090) |
| >sp|Q5U2R7|MESD_RAT LDLR chaperone MESD OS=Rattus norvegicus GN=Mesdc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/97 (54%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV++ G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 88 DPGKPESILKMTKKGKTLMMFVTISGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 147
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 148 AIFMLRDGSYAWEIKDFLVNQDRCAEVTLEGQMYPGK 184
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway through chaperoning the coreceptors of the canonical Wnt pathway, LRP5 and LRP6, to the plasma membrane. Essential for specification of embryonic polarity and mesoderm induction. Rattus norvegicus (taxid: 10116) |
| >sp|Q3T0U1|MESD_BOVIN LDLR chaperone MESD OS=Bos taurus GN=MESDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 73/97 (75%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 95 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 154
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DG AW+ KD+LV Q+RC VT+E +VYPGK
Sbjct: 155 AIFMLRDGGYAWEIKDFLVSQDRCADVTLEGQVYPGK 191
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway through chaperoning the coreceptors of the canonical Wnt pathway, LRP5 and LRP6, to the plasma membrane. Essential for specification of embryonic polarity and mesoderm induction. Bos taurus (taxid: 9913) |
| >sp|Q5R6F1|MESD_PONAB LDLR chaperone MESD OS=Pongo abelii GN=MESDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 73/97 (75%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G PT E E IT LWQ SLFN++ +R++V R
Sbjct: 97 DPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 156
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DG+ AW+ KD+LV Q+RC VT+E +VYPGK
Sbjct: 157 AIFMLRDGNYAWEIKDFLVGQDRCADVTLEGQVYPGK 193
|
Chaperone specifically assisting the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). Acts as a modulator of the Wnt pathway through chaperoning the coreceptors of the canonical Wnt pathway, LRP5 and LRP6, to the plasma membrane. Essential for specification of embryonic polarity and mesoderm induction. Pongo abelii (taxid: 9601) |
| >sp|Q8C0T7|MFSD9_MOUSE Major facilitator superfamily domain-containing protein 9 OS=Mus musculus GN=Mfsd9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 100/165 (60%), Gaps = 9/165 (5%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
+ FLDLF S++VPL+N ++R+ + S G + S++ +LQ+ S+ VG SD+ GR+
Sbjct: 41 LVGFLDLFGVSMVVPLLNLHVRS-LGASPVVAGIVGSSYGVLQLFSSTFVGCWSDVVGRR 99
Query: 276 TILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AF 333
+ LL C+ + YLLLG+ +V++ R+ +G+FKHT + +A +SD+ + +
Sbjct: 100 SSLLVCILLSALGYLLLGMSTNVFLFTLARVPVGVFKHTLSISRALLSDLVTEKERPLVL 159
Query: 334 SQLMMVTFLGFFIGPAIGGHVIHYENGFF---YICCMTSALFVVN 375
Q + +GF +GP +GG++ + GF+ +ICC ++F++N
Sbjct: 160 GQFNTASGVGFILGPVVGGYLTELDGGFYVTAFICC---SVFLLN 201
|
Mus musculus (taxid: 10090) |
| >sp|Q8NBP5|MFSD9_HUMAN Major facilitator superfamily domain-containing protein 9 OS=Homo sapiens GN=MFSD9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
+ FLDLF S++VPL++ ++++ + S G + S++ +LQ+ S+ VG SD+ GR+
Sbjct: 51 LVGFLDLFGVSMVVPLLSLHVKS-LGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRR 109
Query: 276 TILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AF 333
+ LL C+ + YLLLG +V++ R+ G+FKHT + +A +SD+ + +
Sbjct: 110 SSLLACILLSALGYLLLGAATNVFLFVLARVPAGIFKHTLSISRALLSDVVPEKERPLVI 169
Query: 334 SQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375
+ +GF +GP +GG++ E+GF+ + +F++N
Sbjct: 170 GHFNTASGVGFILGPVVGGYLTELEDGFYLTAFICFLVFILN 211
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 822 | ||||||
| 195425413 | 181 | GK10712 [Drosophila willistoni] gi|19415 | 0.130 | 0.591 | 0.728 | 3e-39 | |
| 195121436 | 179 | GI19202 [Drosophila mojavensis] gi|19391 | 0.126 | 0.581 | 0.728 | 5e-39 | |
| 17863016 | 180 | SD08653p [Drosophila melanogaster] | 0.122 | 0.561 | 0.745 | 7e-39 | |
| 194863772 | 180 | GG10730 [Drosophila erecta] gi|190662473 | 0.128 | 0.588 | 0.719 | 9e-39 | |
| 24586303 | 180 | boca [Drosophila melanogaster] gi|259495 | 0.122 | 0.561 | 0.745 | 9e-39 | |
| 195332163 | 180 | GM20777 [Drosophila sechellia] gi|194124 | 0.122 | 0.561 | 0.745 | 1e-38 | |
| 195474428 | 179 | GE23816 [Drosophila yakuba] gi|194175594 | 0.115 | 0.530 | 0.770 | 1e-38 | |
| 195028969 | 179 | GH20023 [Drosophila grimshawi] gi|193903 | 0.121 | 0.558 | 0.742 | 1e-38 | |
| 195383238 | 179 | GJ20269 [Drosophila virilis] gi|19414513 | 0.115 | 0.530 | 0.770 | 2e-38 | |
| 195581260 | 180 | GD10238 [Drosophila simulans] gi|1941924 | 0.122 | 0.561 | 0.735 | 3e-38 |
| >gi|195425413|ref|XP_002061003.1| GK10712 [Drosophila willistoni] gi|194157088|gb|EDW71989.1| GK10712 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 170 bits (430), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/107 (72%), Positives = 93/107 (86%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ +PE LLK+SKKGRTLM FVSV G+PTR+EA+ ITKLWQTSL+N+HIQAERY
Sbjct: 73 LDLSNLDSKNPEELLKVSKKGRTLMTFVSVSGNPTREEADEITKLWQTSLWNNHIQAERY 132
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
MV+D+RAIFLFKDG QAW+AKD+LV+QERCK VTIENK YPG T++
Sbjct: 133 MVDDNRAIFLFKDGEQAWEAKDFLVEQERCKGVTIENKEYPGVHTRD 179
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195121436|ref|XP_002005226.1| GI19202 [Drosophila mojavensis] gi|193910294|gb|EDW09161.1| GI19202 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 169 bits (428), Expect = 5e-39, Method: Composition-based stats.
Identities = 78/107 (72%), Positives = 92/107 (85%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ +PE LLK+SKKGRTLM FVSV G+PTR+E E ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKNPEELLKVSKKGRTLMTFVSVTGNPTREEGEQITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
MV+D+RAIFLFKDG+QAW+AKD+LV+QERCK VTIENK YPG K+
Sbjct: 131 MVDDNRAIFLFKDGAQAWEAKDFLVEQERCKGVTIENKEYPGVHVKD 177
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|17863016|gb|AAL39985.1| SD08653p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 169 bits (427), Expect = 7e-39, Method: Composition-based stats.
Identities = 76/102 (74%), Positives = 91/102 (89%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPG 172
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194863772|ref|XP_001970606.1| GG10730 [Drosophila erecta] gi|190662473|gb|EDV59665.1| GG10730 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 9e-39, Method: Composition-based stats.
Identities = 77/107 (71%), Positives = 93/107 (86%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG K+
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPGVHAKK 177
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24586303|ref|NP_724578.1| boca [Drosophila melanogaster] gi|259495592|sp|Q8T9B6.2|MESD_DROME RecName: Full=LDLR chaperone boca; Flags: Precursor gi|21645590|gb|AAF59229.2| boca [Drosophila melanogaster] gi|201065899|gb|ACH92359.1| FI06486p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 9e-39, Method: Composition-based stats.
Identities = 76/102 (74%), Positives = 91/102 (89%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPG 172
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195332163|ref|XP_002032768.1| GM20777 [Drosophila sechellia] gi|194124738|gb|EDW46781.1| GM20777 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 1e-38, Method: Composition-based stats.
Identities = 76/102 (74%), Positives = 91/102 (89%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPG 172
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195474428|ref|XP_002089493.1| GE23816 [Drosophila yakuba] gi|194175594|gb|EDW89205.1| GE23816 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/96 (77%), Positives = 89/96 (92%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERYMV+D+R
Sbjct: 76 DSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNR 135
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
AIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 136 AIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPG 171
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195028969|ref|XP_001987347.1| GH20023 [Drosophila grimshawi] gi|193903347|gb|EDW02214.1| GH20023 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 92/101 (91%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D+ +PE LLK+SKKGRTLM FVSV G+PTRDE +SITKLWQTSL+N+HIQAERYMV+D+R
Sbjct: 77 DSKNPEDLLKVSKKGRTLMTFVSVSGNPTRDEGDSITKLWQTSLWNNHIQAERYMVDDNR 136
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
AIFLFKDG+QAW+AKD+LV+Q+RCK VTIENK YPG+ ++
Sbjct: 137 AIFLFKDGAQAWEAKDFLVEQQRCKGVTIENKEYPGEYARD 177
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195383238|ref|XP_002050333.1| GJ20269 [Drosophila virilis] gi|194145130|gb|EDW61526.1| GJ20269 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 167 bits (423), Expect = 2e-38, Method: Composition-based stats.
Identities = 74/96 (77%), Positives = 88/96 (91%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D+ +PE LLK+SKKGRTLM FVSV G+PTR++ E ITKLWQTSL+N+HIQAERYMV+D+R
Sbjct: 77 DSKNPEDLLKVSKKGRTLMTFVSVTGNPTREQGEEITKLWQTSLWNNHIQAERYMVDDNR 136
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
AIFLFKDG+QAW+AKD+LV+QERCK VTIENK YPG
Sbjct: 137 AIFLFKDGAQAWEAKDFLVEQERCKGVTIENKEYPG 172
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195581260|ref|XP_002080452.1| GD10238 [Drosophila simulans] gi|194192461|gb|EDX06037.1| GD10238 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 167 bits (422), Expect = 3e-38, Method: Composition-based stats.
Identities = 75/102 (73%), Positives = 91/102 (89%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
MV+D+RAIFLFKDG+QAW+AKD+L++QERCK VTIENK YPG
Sbjct: 131 MVDDNRAIFLFKDGTQAWEAKDFLIEQERCKGVTIENKEYPG 172
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 822 | ||||||
| FB|FBgn0004132 | 180 | boca "boca" [Drosophila melano | 0.130 | 0.594 | 0.719 | 1.2e-37 | |
| ZFIN|ZDB-GENE-070912-190 | 467 | mfsd9 "major facilitator super | 0.253 | 0.445 | 0.303 | 7.7e-31 | |
| RGD|1562212 | 466 | Mfsd9 "major facilitator super | 0.189 | 0.334 | 0.339 | 1.6e-30 | |
| MGI|MGI:2443548 | 466 | Mfsd9 "major facilitator super | 0.186 | 0.328 | 0.339 | 1.9e-30 | |
| UNIPROTKB|Q8NBP5 | 474 | MFSD9 "Major facilitator super | 0.188 | 0.327 | 0.318 | 5.1e-30 | |
| MGI|MGI:1891421 | 224 | Mesdc2 "mesoderm development c | 0.118 | 0.433 | 0.556 | 3.4e-28 | |
| UNIPROTKB|F1RIE0 | 232 | MESDC2 "Uncharacterized protei | 0.118 | 0.418 | 0.567 | 4.2e-28 | |
| RGD|1310344 | 224 | Mesdc2 "mesoderm development c | 0.118 | 0.433 | 0.546 | 4.4e-28 | |
| UNIPROTKB|F1P4R7 | 440 | MFSD9 "Uncharacterized protein | 0.188 | 0.352 | 0.325 | 5.1e-28 | |
| UNIPROTKB|Q3T0U1 | 232 | MESDC2 "LDLR chaperone MESD" [ | 0.118 | 0.418 | 0.556 | 1.5e-27 |
| FB|FBgn0004132 boca "boca" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 77/107 (71%), Positives = 93/107 (86%)
Query: 59 LRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERY 118
L L D+ PE LLK+SKKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERY
Sbjct: 71 LDLSNLDSKSPEDLLKVSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY 130
Query: 119 MVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
MV+D+RAIFLFKDG+QAWDAKD+L++QERCK VTIENK YPG K+
Sbjct: 131 MVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENKEYPGVNAKK 177
|
|
| ZFIN|ZDB-GENE-070912-190 mfsd9 "major facilitator superfamily domain containing 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 7.7e-31, Sum P(3) = 7.7e-31
Identities = 67/221 (30%), Positives = 117/221 (52%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTI-GAIASTFSLLQIISAPTVGYLSDLY 272
I + F+DLF S+I+PL++++++ L ++ T+ G + ST+ +LQ+ S+ VG SD+
Sbjct: 22 IYVVGFMDLFGVSMIIPLLSHHVK--YLGASPTVAGIVGSTYGVLQLFSSTLVGSWSDVV 79
Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK- 331
GR+ LLTCL Y LLGL S+ + RI +GLFKH+ +C+A +SD+ + +
Sbjct: 80 GRRYSLLTCLLLSAFGYGLLGLSTSIALFVLARIPVGLFKHSLSICRALLSDLVTEKERP 139
Query: 332 -AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYP 390
+ +GF +GP +GG + +E GF+ + +A+F++N W++ +
Sbjct: 140 LVMGHFNAASSVGFILGPVVGGSLTEHEGGFYLSSFVCAAIFLLN-AGLVWILPWSETLN 198
Query: 391 TRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHL 431
+ NG P + D + N R+ E+ HL
Sbjct: 199 HCIDANANG------KPKTSKAYD-SLNNSVQRNCSEKNHL 232
|
|
| RGD|1562212 Mfsd9 "major facilitator superfamily domain containing 9" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 54/159 (33%), Positives = 95/159 (59%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTIL 278
FLDLF S+ VPL+N ++R+ + +S G + S++ +LQ+ S+ VG SD+ GR+ L
Sbjct: 44 FLDLFGVSMTVPLLNLHVRS-LGVSPVVAGIVGSSYGILQLFSSTFVGCWSDVVGRRCSL 102
Query: 279 LTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQL 336
L C+ + YLLLG+ +V++ R+ +G+FKHT + +A +SD+ + + Q
Sbjct: 103 LVCILLSALGYLLLGMSTNVFLFTLARVPVGVFKHTLSISRALLSDLVTEKERPLVLGQF 162
Query: 337 MMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375
+ +GF +GP IGG++ + GF+ M ++F++N
Sbjct: 163 NTASGVGFILGPVIGGYLTELDGGFYVTAFMCCSVFLLN 201
|
|
| MGI|MGI:2443548 Mfsd9 "major facilitator superfamily domain containing 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 55/162 (33%), Positives = 99/162 (61%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTIL 278
FLDLF S++VPL+N ++R+ + S G + S++ +LQ+ S+ VG SD+ GR++ L
Sbjct: 44 FLDLFGVSMVVPLLNLHVRS-LGASPVVAGIVGSSYGVLQLFSSTFVGCWSDVVGRRSSL 102
Query: 279 LTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQL 336
L C+ + YLLLG+ +V++ R+ +G+FKHT + +A +SD+ + + Q
Sbjct: 103 LVCILLSALGYLLLGMSTNVFLFTLARVPVGVFKHTLSISRALLSDLVTEKERPLVLGQF 162
Query: 337 MMVTFLGFFIGPAIGGHVIHYENGFF---YICCMTSALFVVN 375
+ +GF +GP +GG++ + GF+ +ICC ++F++N
Sbjct: 163 NTASGVGFILGPVVGGYLTELDGGFYVTAFICC---SVFLLN 201
|
|
| UNIPROTKB|Q8NBP5 MFSD9 "Major facilitator superfamily domain-containing protein 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 5.1e-30, Sum P(3) = 5.1e-30
Identities = 51/160 (31%), Positives = 96/160 (60%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTI-GAIASTFSLLQIISAPTVGYLSDLYGRKTI 277
FLDLF S++VPL++ ++++ L ++ T+ G + S++ +LQ+ S+ VG SD+ GR++
Sbjct: 54 FLDLFGVSMVVPLLSLHVKS--LGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSS 111
Query: 278 LLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQ 335
LL C+ + YLLLG +V++ R+ G+FKHT + +A +SD+ + +
Sbjct: 112 LLACILLSALGYLLLGAATNVFLFVLARVPAGIFKHTLSISRALLSDVVPEKERPLVIGH 171
Query: 336 LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375
+ +GF +GP +GG++ E+GF+ + +F++N
Sbjct: 172 FNTASGVGFILGPVVGGYLTELEDGFYLTAFICFLVFILN 211
|
|
| MGI|MGI:1891421 Mesdc2 "mesoderm development candidate 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 54/97 (55%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 88 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 147
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 148 AIFMLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGK 184
|
|
| UNIPROTKB|F1RIE0 MESDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 55/97 (56%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 95 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 154
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E +VYPGK
Sbjct: 155 AIFMLRDGSYAWEIKDFLVSQDRCADVTLEGQVYPGK 191
|
|
| RGD|1310344 Mesdc2 "mesoderm development candidate 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 4.4e-28, Sum P(2) = 4.4e-28
Identities = 53/97 (54%), Positives = 74/97 (76%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV++ G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 88 DPGKPESILKMTKKGKTLMMFVTISGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 147
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 148 AIFMLRDGSYAWEIKDFLVNQDRCAEVTLEGQMYPGK 184
|
|
| UNIPROTKB|F1P4R7 MFSD9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 52/160 (32%), Positives = 97/160 (60%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTI-GAIASTFSLLQIISAPTVGYLSDLYGRKTI 277
FLDLF S++VPL+N ++++ L ++ T+ G I S + ++Q+ S+ VG SD+ GR+
Sbjct: 19 FLDLFGVSMVVPLMNLHIKS--LGASHTVAGIIGSLYGIMQLFSSTFVGCWSDIVGRRYS 76
Query: 278 LLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQ 335
LL C+ + Y LLG +V++ R+ +G+FKHT + KA +SD+ + + +
Sbjct: 77 LLACILLSALGYFLLGTSTTVFLFAVSRVPVGIFKHTLSISKALLSDLVSERDRPLVMGR 136
Query: 336 LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375
+ +GF +GP +GG++ E+GF+ + +++F++N
Sbjct: 137 FNAASGVGFILGPVVGGYLTELEDGFYKTSFICASIFILN 176
|
|
| UNIPROTKB|Q3T0U1 MESDC2 "LDLR chaperone MESD" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 54/97 (55%), Positives = 73/97 (75%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 95 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 154
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
AIF+ +DG AW+ KD+LV Q+RC VT+E +VYPGK
Sbjct: 155 AIFMLRDGGYAWEIKDFLVSQDRCADVTLEGQVYPGK 191
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ERE7 | MESD_MOUSE | No assigned EC number | 0.5567 | 0.1143 | 0.4196 | yes | N/A |
| Q5ZKK4 | MESD_CHICK | No assigned EC number | 0.5670 | 0.1131 | 0.4227 | yes | N/A |
| Q5U2R7 | MESD_RAT | No assigned EC number | 0.5463 | 0.1143 | 0.4196 | yes | N/A |
| Q3T0U1 | MESD_BOVIN | No assigned EC number | 0.5567 | 0.1143 | 0.4051 | yes | N/A |
| Q5R6F1 | MESD_PONAB | No assigned EC number | 0.5567 | 0.1143 | 0.4017 | yes | N/A |
| Q8T9B6 | MESD_DROME | No assigned EC number | 0.7450 | 0.1228 | 0.5611 | yes | N/A |
| Q14696 | MESD_HUMAN | No assigned EC number | 0.5670 | 0.1143 | 0.4017 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 822 | |||
| pfam10185 | 156 | pfam10185, Mesd, Chaperone for wingless signalling | 9e-53 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-21 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-19 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-11 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 2e-08 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-08 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 4e-06 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-05 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-05 | |
| pfam10185 | 156 | pfam10185, Mesd, Chaperone for wingless signalling | 6e-05 | |
| TIGR00899 | 375 | TIGR00899, 2A0120, sugar efflux transporter | 8e-05 | |
| pfam10185 | 156 | pfam10185, Mesd, Chaperone for wingless signalling | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| PRK09874 | 408 | PRK09874, PRK09874, drug efflux system protein Mdt | 2e-04 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 3e-04 | |
| PRK09874 | 408 | PRK09874, PRK09874, drug efflux system protein Mdt | 4e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.001 | |
| PLN00028 | 476 | PLN00028, PLN00028, nitrate transmembrane transpor | 0.001 | |
| PRK12382 | 392 | PRK12382, PRK12382, putative transporter; Provisio | 0.001 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 0.002 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 0.003 |
| >gnl|CDD|220622 pfam10185, Mesd, Chaperone for wingless signalling and trafficking of LDL receptor | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 9e-53
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D +PE LLK+SKKG+TLM FV+V G+PTR E E ITKLWQ SLFN+HI A+R++V+D+R
Sbjct: 48 DAKNPEDLLKMSKKGKTLMTFVTVSGNPTRKETEEITKLWQGSLFNNHIDAQRFVVDDNR 107
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKEIKS 168
AIF+FKDGSQAW+AKD+LV QERC VTIE + YPGK S
Sbjct: 108 AIFMFKDGSQAWEAKDFLVSQERCAEVTIEGQEYPGKADARAGS 151
|
Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation). Length = 156 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 7e-21
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 5/192 (2%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FL SL+ P + YL + +S IG + + FSL ++ P G LSD +G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK-HTQVLCKAYISDICVDS--T 330
R+ +LL L + LLL S++++ +R+L GL A I+D
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 331 KAFSQLMMVTFLGFFIGPAIGGHVIHYEN--GFFYICCMTSALFVVNFVYTYWVVTDVKK 388
+A L LG +GP +GG + F I + + L V K
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESK 180
Query: 389 YPTRTSLSPNGL 400
P +P L
Sbjct: 181 RPKPAEEAPAPL 192
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-19
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 6/175 (3%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FL L+ P + + LS G I S FSL + + GYLSD +G
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--T 330
R+ +LL L + LLL S++++ R LLGL A I++
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 331 KAFSQLMMVTFLGFFIGPAIGGHVIHYEN--GFFYICCMTSALFVVNFVYTYWVV 383
+A LG +GP +GG + F I + L + ++ ++
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL 177
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 5/174 (2%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
++ FL F ++ + YL+ + LS G + S F L I+ A G LSD G
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 274 RKTILLT-CLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK-HTQVLCKAYISDIC--VDS 329
R+ +LL L + LLL L S+ ++ +LLG S++
Sbjct: 240 RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299
Query: 330 TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
A LG +GP + G ++ G+ + + +AL ++ + +
Sbjct: 300 GTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 248 GAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307
G + + ++L Q+I +P G L+D +GRK +LL LF ++S + L ++ V+ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 308 LGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYEN---GF 361
G V A I+DI A + LG +GP +GG + + F
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 362 FYICCMTSALFVV 374
++ + A F++
Sbjct: 121 LFLAILALAAFIL 133
|
Length = 141 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (136), Expect = 2e-08
Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 8/185 (4%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVL-LSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
++ L L+ P + L T L G + S F L I + G L D Y
Sbjct: 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY 66
Query: 273 GRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLFKHTQ-VLCKAYISDICVDS 329
GR+ +L+ L ++ LLL L + ++ +R+L GL + A +S+ ++
Sbjct: 67 GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEA 126
Query: 330 TKAFSQL----MMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385
T+ + + LG +GP + G ++ + + +AL + + ++
Sbjct: 127 TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLDL 186
Query: 386 VKKYP 390
+ P
Sbjct: 187 LLAAP 191
|
Length = 338 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 24/215 (11%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL--YKSVY 299
S G I S FS+ +I + G L D +GRK LL ++ LL G KS Y
Sbjct: 43 ASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFY 102
Query: 300 VIFFVRILLGLF-KHTQVLCKAYISDICVDSTK----AFSQLMMVT--FLGFFIGPAIGG 352
++ R+++GL VL YIS+I + + QL + + IG +
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162
Query: 353 HVIHYENGF---FYICCMTSALFVVNFVYT----YWVVTDVKKYPTRTSLSPNGLESSDV 405
+G+ + + + L ++ ++ W+V K R L+ SDV
Sbjct: 163 --YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA-KLRGVSDV 219
Query: 406 NPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCH 440
+ +QEE D R ++ E+ +
Sbjct: 220 DQEIQEEKDSLE-----RSVEAEKASWLELFRGKT 249
|
Length = 449 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 238 TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS 297
Q+ L+ + +G F+ Q++ G LSD YGR+ +LL LF +S L L L +
Sbjct: 42 VQMTLTLYLLG-----FAAGQLL----WGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92
Query: 298 VYVIFFVRILLGLFKHT-QVLCKAYISDICV--DSTKAFSQLMMVTFLGFFIGPAIGGHV 354
+ + +R + V+ +A + DI + ++ +S LM V L + P +GG++
Sbjct: 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152
Query: 355 IHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTRTSLS 396
+ + + I S ++ ++++ + Y R +S
Sbjct: 153 LVWL-SWHAIFAFLSLAGILLSALIFFILPETLPYEARIQIS 193
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 216 FICFLD--LFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+L FA ++ YL ++ LS +G + S+FS+ IS +G +SD
Sbjct: 5 AAYYLVRKNFALAM------PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN 58
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF 311
+ L L C + L G S++V+ + L G+F
Sbjct: 59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF 96
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK-TILLTCLFTCIVSYLLLGLYK---S 297
S+ G + S F + I A G+LSD +GRK ++L+ L ++ +L+GL S
Sbjct: 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF-VIGAILMGLAAFALS 126
Query: 298 VYVIFFVRILLGLF-KHTQVLCKAYISDICVDSTKA----FSQLMMVT--FLGFFIGPAI 350
V ++ R+LLG+ L Y+S+I + + QL + + + G
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG--S 184
Query: 351 GGHVIHYENGF---FYICCMTSALFVV 374
G ++ G+ + + + L +
Sbjct: 185 GKVSLNNTLGWRIPLGLQLIPAGLLFL 211
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 16/144 (11%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FA +PL L LS G + LL I +G LSD G
Sbjct: 210 ALLLFGFAFFALLTYLPLYQEVLG----LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265
Query: 274 RKTILLTCLFTCIVSYLLLGL-------YKSVYVIFFVRILLGLFKHTQVLCKAYISDIC 326
R+ LL L I++ L L L + + + GL A +SD+
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGL---VFPALNALVSDLA 322
Query: 327 VDS--TKAFSQLMMVTFLGFFIGP 348
A LG +GP
Sbjct: 323 PKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|220622 pfam10185, Mesd, Chaperone for wingless signalling and trafficking of LDL receptor | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 695 AKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHET-KHKDPNLNLDLGQI 743
KKD+ YNDAD+ERL +QWE D E +HK P +DL ++
Sbjct: 1 KKKDIRDYNDADMERLLEQWE---EDDDDLEEDELPEHKRPPPPIDLSKL 47
|
Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation). Length = 156 |
| >gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-RK 275
+ FL A +L P ++ +L +V IG + +++ I + + SD G RK
Sbjct: 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK 64
Query: 276 TILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV-----LCKAYISDICVDST 330
++L C ++ LL ++ +++ + +LL F T L + + ++
Sbjct: 65 GLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAV 124
Query: 331 KAFSQLMMVTFLGFFIGPAIGG 352
S + L + IGP +
Sbjct: 125 MFSSVMRAQISLAWVIGPPLAF 146
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 375 |
| >gnl|CDD|220622 pfam10185, Mesd, Chaperone for wingless signalling and trafficking of LDL receptor | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 459 AKKDLSFYNDADLERLFDQWE 479
KKD+ YNDAD+ERL +QWE
Sbjct: 1 KKKDIRDYNDADMERLLEQWE 21
|
Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation). Length = 156 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 54/222 (24%)
Query: 586 AYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIHIDS 645
+ L FL + + L ++ G +S GL G +L + S
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 646 R---NSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFY 702
L +L + +L L ++ +L L ++ L+
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLL-------------------- 275
Query: 703 NDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIY 762
G F FP A + + G+ SG++
Sbjct: 276 --------------GFG-LGFAFP-------------ALLTLASELAPPEARGT-ASGLF 306
Query: 763 NSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVV 804
N+ S+ + PLL G++ D Y FL+ + +
Sbjct: 307 NTFGSLGGALGPLLAGLLLDTG--GYGGVFLILAALALLAAL 346
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 218 CFLDLFAASLIVPLVNNYLR----TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
CFL A SL++P + Y+ T N G + S L I++P G L+D G
Sbjct: 23 CFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG 82
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICV--DSTK 331
RK +LL + +L+GL ++++ +R LLGL A I+ S
Sbjct: 83 RKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGW 142
Query: 332 AFSQLMMVTFLGFFIGPAIGGHVI-HYENGFFYICCMTSALFVVNFVYTYWVVTD 385
A L G +GP GG + Y G + +T+++ + F+ T + + +
Sbjct: 143 ALGTLSTGGVSGALLGPLAGGLLADSY--GLRPVFFITASVLFLCFLVTLFCIRE 195
|
Length = 408 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
F F S +P YL TQ LS T G IA F L+ ++ P G+LSD G +
Sbjct: 228 FATFGGFVGFSAYLP---MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR 284
Query: 276 TILL-----TCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV---LCKAYISDICV 327
+ L L ++S L G + FV + L LF + I I
Sbjct: 285 RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVI-- 342
Query: 328 DSTKAFSQLMMVTFLGFFIGP--AIGGHVIHYENGFFY-------ICCMT-SALFVVNFV 377
F + + +G +GG + G M A ++V V
Sbjct: 343 -----FPK--ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395
Query: 378 YTYWV 382
T+ +
Sbjct: 396 LTWAL 400
|
Length = 417 |
| >gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 220 LDLFAASLIV--------PLVNNYLRTQVLLSN-----FTIGAIASTFSLLQIISAPTVG 266
L LF +LI+ P++ Y+R L N F G IAS + ++SAP +G
Sbjct: 222 LSLFVTTLIIQVATGSIAPILTLYVRE--LAGNVSNIAFISGMIASVPGVAALLSAPRLG 279
Query: 267 YLSDLYGRKTILLTCLFTCIVSYLLL---GLYKSVYVIFFVRILLG-----LFKHTQVLC 318
L D G + IL+T L I S LLL ++ + +R LLG L Q L
Sbjct: 280 KLGDRIGPEKILITAL---IFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336
Query: 319 KAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378
Y S + + + FS +G GP +G I GF + +T+ + + N VY
Sbjct: 337 -VYNSSNQI-AGRIFSYNQSFRDIGNVTGPLMGA-AISANYGFRAVFLVTAGVVLFNAVY 393
Query: 379 TY 380
++
Sbjct: 394 SW 395
|
Length = 408 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 246 TIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVR 305
G + + ++L + AP + L+ R+ +LL L IVS LL L S V+ R
Sbjct: 49 AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR 108
Query: 306 ILLGL-----FKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIG---GHVI 355
L GL + + A + + +A + + L +G +G G +
Sbjct: 109 ALAGLAHGVFW----SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 356 HYENGFFYICCMTSALFVVNF 376
+ F I + ++ +
Sbjct: 165 GWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 219 FLDLFAASLIVPLVNN-------YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL 271
L L L+ L Y T VL + + ++ I+ AP +L+
Sbjct: 224 LLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKR 283
Query: 272 YGRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLF 311
+G+K L + + +LL S+++ + +L G+
Sbjct: 284 FGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIG 325
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 49/193 (25%), Positives = 71/193 (36%), Gaps = 48/193 (24%)
Query: 218 CFLDLFAASLIVPL-VNN----YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
+ S V L ++N Y + LS T GAIA++F L+ + + P GYLSD+
Sbjct: 256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA 315
Query: 273 GRK------TILLTCLFT-----CIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKA- 320
R+ L + T CI LG S+ V IL +F Q C A
Sbjct: 316 ARRFGMRGRLWALWIVQTLGGVFCIW----LGRANSLGAAIVVMILFSIF--VQAACGAT 369
Query: 321 -----YISDICVDSTKAFSQLM--------MVTFLGFFIGPAIGGHVIHYENGFFY---- 363
++S S S L ++T L FF G + E G
Sbjct: 370 FGIVPFVSR---RSLGVISGLTGAGGNVGAVLTQLLFFTGSS-----YSTETGISLMGVM 421
Query: 364 ICCMTSALFVVNF 376
I T + ++F
Sbjct: 422 IIACTLPVAFIHF 434
|
Length = 476 |
| >gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 20/202 (9%)
Query: 208 SLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGY 267
SL I+F FL L +P++ ++ + N +G L +++ G
Sbjct: 16 SLFR--IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGR 73
Query: 268 LSDLYGRKTILLTCLFTCIVS---YLLLGLYKSVYVIFFV-----RILLGLFKHTQVLCK 319
L+D YG K L + C ++ YLL + F R++LG F +Q+L
Sbjct: 74 LADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILG-FGESQLLTG 132
Query: 320 AYISDI-CVDSTKAFSQLMMVTFLGFFIGPAIG---GHVIHYENGFFYICCMTSALFVVN 375
A + V + ++M + + A G G ++H GF + T L ++
Sbjct: 133 ALTWGLGLVGPKHS-GKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA 191
Query: 376 FVYTYWVVTDVKKYPTRTSLSP 397
+ + V+K P P
Sbjct: 192 WAFNGT----VRKVPAHAGERP 209
|
Length = 392 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 234 NYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293
+ + Q LS T GA AS LL ++ P G +SD G LL + L+
Sbjct: 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309
Query: 294 LYKSVYVIFFVRILLGLF 311
L + V I+L +
Sbjct: 310 LGLVSPLSLAVFIVLFVA 327
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 24/144 (16%)
Query: 248 GAIASTFSLLQ----IISAPTVGYLSDLYGRKTI-----LLTCLFTCIVS-YLLLGLYK- 296
++ S +L ++ +P G L+D Y RK + L+ + ++ LLG
Sbjct: 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92
Query: 297 -SVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGH 353
VYV+ + + F +A + D+ + T+A S V L + +GP IG
Sbjct: 93 WQVYVLAGILAIAQAFFTPAY--QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG-- 148
Query: 354 VIHYENGFFYICCMTSALFVVNFV 377
G Y V+ V
Sbjct: 149 ------GLMYATLGIKWAIWVDAV 166
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 822 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| KOG2532|consensus | 466 | 99.91 | ||
| KOG2504|consensus | 509 | 99.91 | ||
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.9 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.89 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.89 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.89 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.88 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.87 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.87 | |
| KOG2615|consensus | 451 | 99.86 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.86 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.85 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.83 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.82 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.82 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.81 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.8 | |
| KOG1330|consensus | 493 | 99.8 | ||
| KOG2533|consensus | 495 | 99.79 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.78 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.78 | |
| KOG3764|consensus | 464 | 99.78 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.77 | |
| KOG0253|consensus | 528 | 99.77 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.75 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.75 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.73 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.73 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.71 | |
| KOG0569|consensus | 485 | 99.7 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.7 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.65 | |
| KOG0252|consensus | 538 | 99.64 | ||
| KOG0254|consensus | 513 | 99.6 | ||
| PF10185 | 158 | Mesd: Chaperone for wingless signalling and traffi | 99.59 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.58 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.56 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.56 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.53 | |
| KOG0255|consensus | 521 | 99.53 | ||
| KOG4357|consensus | 164 | 99.52 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.51 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.51 | |
| KOG2325|consensus | 488 | 99.46 | ||
| KOG4686|consensus | 459 | 99.42 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.35 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.34 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.33 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.33 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.31 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.3 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.3 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.29 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.29 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| KOG2816|consensus | 463 | 99.26 | ||
| PRK03699 | 394 | putative transporter; Provisional | 99.25 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.25 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.25 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.24 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.23 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.22 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.21 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.18 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.17 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.16 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.16 | |
| KOG2563|consensus | 480 | 99.16 | ||
| PRK12382 | 392 | putative transporter; Provisional | 99.15 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.13 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.13 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.13 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.11 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.1 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.09 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.09 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.08 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.07 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.06 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.04 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.04 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.03 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.01 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.98 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.9 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.88 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.87 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.85 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.85 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.84 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.82 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.81 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.81 | |
| KOG2504|consensus | 509 | 98.79 | ||
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.79 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.79 | |
| KOG3626|consensus | 735 | 98.78 | ||
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.78 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.76 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.74 | |
| KOG0637|consensus | 498 | 98.73 | ||
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.73 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.73 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.73 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.73 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.72 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.7 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.68 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.68 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.67 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.66 | |
| KOG0569|consensus | 485 | 98.65 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.64 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.59 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.57 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.49 | |
| KOG4686|consensus | 459 | 98.49 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.49 | |
| KOG3764|consensus | 464 | 98.46 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.45 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.45 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.44 | |
| KOG2532|consensus | 466 | 98.42 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.42 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.39 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.37 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.36 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.34 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.32 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.29 | |
| KOG0253|consensus | 528 | 98.29 | ||
| KOG3762|consensus | 618 | 98.28 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.24 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.18 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.14 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.1 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.06 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.0 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.99 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.97 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.97 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.92 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.83 | |
| KOG2533|consensus | 495 | 97.69 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.67 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.61 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.6 | |
| KOG3762|consensus | 618 | 97.55 | ||
| KOG0254|consensus | 513 | 97.49 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.44 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.4 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.4 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.39 | |
| KOG1330|consensus | 493 | 97.33 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.24 | |
| KOG0252|consensus | 538 | 97.22 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.22 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.16 | |
| KOG0255|consensus | 521 | 97.15 | ||
| KOG2615|consensus | 451 | 97.0 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.87 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.53 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.15 | |
| KOG2816|consensus | 463 | 96.1 | ||
| KOG1237|consensus | 571 | 96.1 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.07 | |
| KOG2325|consensus | 488 | 95.88 | ||
| KOG3098|consensus | 461 | 95.51 | ||
| KOG2563|consensus | 480 | 95.1 | ||
| KOG3574|consensus | 510 | 95.0 | ||
| KOG4332|consensus | 454 | 94.68 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.52 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.09 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.41 | |
| KOG3810|consensus | 433 | 92.53 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 92.22 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.14 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.71 | |
| KOG3098|consensus | 461 | 89.94 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.69 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.35 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 88.66 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 87.21 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 86.65 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 84.62 | |
| KOG3626|consensus | 735 | 83.7 | ||
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 82.46 | |
| KOG3097|consensus | 390 | 82.37 | ||
| KOG0637|consensus | 498 | 81.61 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=256.46 Aligned_cols=360 Identities=17% Similarity=0.166 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.++.|.....-....+.+|... +++|+|..+.|+..++|.++..++.|+...+.||+.||++++..+.++.++++++
T Consensus 17 aLa~~~F~igttEfv~~gLLp~iA-~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~ 95 (394)
T COG2814 17 ALALAAFAIGTTEFVPVGLLPPIA-ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95 (394)
T ss_pred HHHHHHHHHHhHHHHHHhchHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888744 5699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
++++|++.++++|++.|+..|. ++...++..++.|+ |.|++++...+..++.++|.++|.++.+.+ |||+.|++.+
T Consensus 96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR~~F~~ia 174 (394)
T COG2814 96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRATFLAIA 174 (394)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHHHHHHHHH
Confidence 9999999999999999999996 89999999999987 467899999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q psy3157 370 ALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKF 449 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 449 (822)
++.++..+..+..+| +++..+......+
T Consensus 175 ~l~ll~~~~~~~~lP--~~~~~~~~~~~~~-------------------------------------------------- 202 (394)
T COG2814 175 VLALLALLLLWKLLP--PSEISGSLPGPLR-------------------------------------------------- 202 (394)
T ss_pred HHHHHHHHHHHHhCC--CccCCCCCCcchh--------------------------------------------------
Confidence 999999988888888 1111110000000
Q ss_pred hcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCC
Q psy3157 450 KEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESS 529 (822)
Q Consensus 450 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (822)
T Consensus 203 -------------------------------------------------------------------------------- 202 (394)
T COG2814 203 -------------------------------------------------------------------------------- 202 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhH
Q psy3157 530 DVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYI 609 (822)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 609 (822)
++...+.....+..++..++...+.+..+++..
T Consensus 203 -----------------------------------------------~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~ 235 (394)
T COG2814 203 -----------------------------------------------TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIR 235 (394)
T ss_pred -----------------------------------------------HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHH
Confidence 000000011236677777788888888899999
Q ss_pred HhhhcccCCCccceeeEEehhhhhccccceeee-ecccCccchhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhhhcccc
Q psy3157 610 SVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSRNSYSSLYYSFILLTVSILALYVSVNLY-LFVLLLVSCKKFKE 687 (822)
Q Consensus 610 ~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~f~~ 687 (822)
+++++..|+++...++++-..|+++++|+++.| +.+++.++.+.....++++.++.+.+..+.. ...+...+ ..|..
T Consensus 236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~-wg~a~ 314 (394)
T COG2814 236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFL-WGFAF 314 (394)
T ss_pred HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHHHh
Confidence 999999999999999999999999999999999 6666666666666666666666655544333 33332222 32221
Q ss_pred CCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhh
Q psy3157 688 GEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTS 767 (822)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~ 767 (822)
....+.|- +... +..++... .+.+++....+
T Consensus 315 ~~~~~~~~-----------------------------------------------~~~a-~~~p~~~~-~a~sl~~aa~n 345 (394)
T COG2814 315 SPALQGLQ-----------------------------------------------TRLA-RLAPDAAD-LAGSLNVAAFN 345 (394)
T ss_pred hhhhhHHH-----------------------------------------------HHhc-ccCCCchH-HHHHHHHHHHH
Confidence 11111110 0111 12334444 59999999999
Q ss_pred hhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 768 IAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 768 lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
+|..+|..++|.++|+.| |....++++++.++++++
T Consensus 346 lgia~GA~lGG~v~~~~g--~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 346 LGIALGAALGGLVLDALG--YAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHH
Confidence 999999999999999954 777788999988888776
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=250.44 Aligned_cols=170 Identities=14% Similarity=0.185 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.++.++.........+.+|. +.+++|.+..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.++++++++
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 92 (390)
T PRK03545 14 LALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA 92 (390)
T ss_pred HHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555665 5557999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.++++|++.|++.+. .+...+++.|++|+ |++++|++..+.++|.++||++++.+.+.. |||++|++.++
T Consensus 93 ~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~ 171 (390)
T PRK03545 93 LAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGG 171 (390)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHHH
Confidence 999999999999999999986 78888999999986 456799999999999999999999998887 99999999998
Q ss_pred HHHHHHHHHhhhccc
Q psy3157 371 LFVVNFVYTYWVVTD 385 (822)
Q Consensus 371 ~~li~~ll~~~~~~e 385 (822)
+.++..++.+..+|+
T Consensus 172 ~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 172 GALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHhCCC
Confidence 887766655555554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=243.31 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..+..........+.+|. +.+++|++..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777888876 455699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.+++.|++.|++.+. .+...+++.+++|++ .++++++..+..+|..+||++++++.+.. +||++|++.+
T Consensus 86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~f~~~~ 164 (382)
T PRK10091 86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYTFLLIA 164 (382)
T ss_pred HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHHHHHHH
Confidence 9999999999999999999986 677788899999874 45689888999999999999999998876 9999999998
Q ss_pred HHHHHHHHHHhhhcccC
Q psy3157 370 ALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~ 386 (822)
++.++..+..++.+|+.
T Consensus 165 ~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 165 VFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 88777666555556653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=244.96 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVR 305 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r 305 (822)
....+.+|. +++++|+|..+.|++.+.+.+++.++++++|+++||+|||+++..+.++++++.++++++++++.++++|
T Consensus 26 ~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r 104 (393)
T PRK09705 26 TSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA 104 (393)
T ss_pred hccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 445566665 5567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy3157 306 ILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375 (822)
Q Consensus 306 ~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~ 375 (822)
+++|++.+. .+....++.+++|+ +++++|++..+..+|..+|+.+++++.+...+||+.+.+.++..++.
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999986 77778899999975 45678999999999999999999998877558999887766554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=247.64 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..++..+......+.+|.+.+ ++|++..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 109 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS 109 (434)
T ss_pred HHHHHHHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 333333333344555665554 5999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
+++.+++.|++.|++.|. .+...+++.+++|++ ++++|+++.+.++|.+++|++++++.+.. |||+.|++.+++.+
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~i~~~ 188 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYGMMIAGIIAI 188 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHH
Confidence 999999999999999886 788899999999864 55689999999999999999999999887 99999999888776
Q ss_pred HHHHHHhhhcccCC
Q psy3157 374 VNFVYTYWVVTDVK 387 (822)
Q Consensus 374 i~~ll~~~~~~e~~ 387 (822)
+..++..+++++++
T Consensus 189 ~~~~~~~~~~~~~p 202 (434)
T PRK11663 189 VVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHHHHHHcCCCH
Confidence 66555555666644
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=245.29 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
++++.++++...........| .+++++|++..+.|++.+++.+++.+++++.|+++||+|||+++.+++++++++.+++
T Consensus 12 ~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 90 (412)
T TIGR02332 12 FLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTAT 90 (412)
T ss_pred HHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 5677899999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccchHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHY-----ENGFFYI 364 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~-----~~gw~~~ 364 (822)
+++++++.+++.|++.|++.|. .+....++.|++|++ ++++++++.+..+|.++||++++++.+. ..|||++
T Consensus 91 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~ 170 (412)
T TIGR02332 91 MFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWL 170 (412)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHH
Confidence 9999999999999999999986 788888999999974 5568999999999999999999988742 1389999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 365 CCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
|++.+++.++..++.++++||+++
T Consensus 171 f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 171 FLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcc
Confidence 999888887777766777787764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=243.95 Aligned_cols=173 Identities=15% Similarity=0.014 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
++.+..+++.+.........|. +.+++|.+..+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 97 (406)
T PRK11551 19 LCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT 97 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3444555555555555555554 445699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.++++++.+++.|++.|++.+. .+...+++.|++|+ |++++++++.+..+|..++|.+++.+.+.. +|++.|++.+
T Consensus 98 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 176 (406)
T PRK11551 98 AQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-AWRHIFYVGG 176 (406)
T ss_pred HHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CHHHHHHHHH
Confidence 9999999999999999999986 78889999999986 455689999999999999999998887776 9999999988
Q ss_pred HHHHHHHHHHhhhcccCC
Q psy3157 370 ALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~ 387 (822)
++.++..++..+++||++
T Consensus 177 ~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 177 VGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHhCCCCh
Confidence 776666665556667654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=238.49 Aligned_cols=373 Identities=16% Similarity=0.189 Sum_probs=271.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch
Q psy3157 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT 314 (822)
Q Consensus 235 ~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~ 314 (822)
++.++.++|.+|+|++.+++.+.+.++..+.|.++||.+.|..+.++++++++.+++++++++++.+.++.++.|++.|.
T Consensus 54 ~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~ 133 (448)
T COG2271 54 ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGM 133 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHH--HHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 315 -QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIG--GHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 315 -~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~--g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
+|++...++.|+++++| ..++++.+-++|+.+.|++. +++..+. +||..|++.+++.++..++.++..+++|++
T Consensus 134 Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 134 GWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred CCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999998655 48999999999999999999 8888886 999999999999999998888888887765
Q ss_pred ccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccccccchhhh
Q psy3157 390 PTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYNDA 469 (822)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 469 (822)
..-.+.++.+.+.
T Consensus 213 ~GLP~ie~~~~d~------------------------------------------------------------------- 225 (448)
T COG2271 213 EGLPPIEEYRGDP------------------------------------------------------------------- 225 (448)
T ss_pred cCCCCHHHhhcCc-------------------------------------------------------------------
Confidence 5433211111000
Q ss_pred hhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCCCCCcchhhhhcccCCCCCCC
Q psy3157 470 DLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESSDVNPLLQEEIDMDMGNDRPR 549 (822)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (822)
.+. .+
T Consensus 226 -~e~------------------------------~~-------------------------------------------- 230 (448)
T COG2271 226 -LEI------------------------------YE-------------------------------------------- 230 (448)
T ss_pred -hhh------------------------------hh--------------------------------------------
Confidence 000 00
Q ss_pred ChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEeh
Q psy3157 550 DIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSF 629 (822)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si 629 (822)
++... +.++. ...+.+++. ..+..|.+.+..++....-+++..|.|.|+.+..|++..+++...++
T Consensus 231 ---~~~~~-----~~ls~-~~i~~~YVL-----~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~l 296 (448)
T COG2271 231 ---EEKEN-----EGLTA-WQIFVKYVL-----KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISL 296 (448)
T ss_pred ---hhccC-----CCccH-HHHHHHHHH-----cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 00000 00000 011222221 22334888888888888899999999999999999999999999999
Q ss_pred hhhhccccceeee-eccc---Cccchh-HHHHHHHHHHHHHHHhhhHH--HHHHHHHHhhhccccCCCCccccccccccc
Q psy3157 630 QGLVGSFSNVLIH-IDSR---NSYSSL-YYSFILLTVSILALYVSVNL--YLFVLLLVSCKKFKEGEEKPKWAKKDLSFY 702 (822)
Q Consensus 630 ~gi~~~v~~i~~G-~~~~---~~~~~l-~~~~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 702 (822)
.=++++.|.+++| +.++ +++... ++..+++.++++.+.+.++. ++..+++...+++..| |
T Consensus 297 fE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyG---P---------- 363 (448)
T COG2271 297 FEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYG---P---------- 363 (448)
T ss_pred HHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh---H----------
Confidence 9999999999999 3332 333333 55555556666666665543 5555555555544433 1
Q ss_pred cccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhhh-hhhhccchhhhHh
Q psy3157 703 NDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSI-AKVITPLLGGIIS 781 (822)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~l-g~~igP~i~G~i~ 781 (822)
. .|... .+ --+..++.+| ++.|+.+.+..+ |.+.+....|++.
T Consensus 364 --q---mLiGl--------------~a------------~e~~pK~AaG-----tA~Gf~Glf~Yl~Ga~~a~~~~g~i~ 407 (448)
T COG2271 364 --Q---MLIGL--------------AA------------AEFVPKKAAG-----TATGFVGLFAYLIGAALAGLPLGYIA 407 (448)
T ss_pred --H---HHHHH--------------HH------------hccccHhhcc-----chhchhhhHHHHhhHHhcCCcceeeE
Confidence 0 11111 00 0133445567 799999999999 8899999999999
Q ss_pred hhccCcccchhhHHHHHHHHHHhhheehhhhhhH
Q psy3157 782 DWVQDNYKVTFLVAFLFGAVGVVTTRVVMMKSRR 815 (822)
Q Consensus 782 d~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 815 (822)
|.+| |...|++..+..++++++.......+++
T Consensus 408 d~~g--W~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 408 DTWG--WDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred ecCC--CcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 9865 6666766666666666654334443333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=256.57 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
+++++.+.+.+....+...+|. +.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++++++.+++
T Consensus 171 i~~l~~~~~g~d~~~is~ilp~-i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~ 249 (742)
T TIGR01299 171 VLGLALMADGVEVFVVGFVLPS-AEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS 249 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3444444454444555555554 555699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE----------- 358 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~----------- 358 (822)
+++++++.++++|++.|++.|+ .+...++++|++|++.| .++++.+++.+|.++++.+++.+....
T Consensus 250 afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~ 329 (742)
T TIGR01299 250 SFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQ 329 (742)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccc
Confidence 9999999999999999999986 89999999999997554 588889999999999999888776532
Q ss_pred -cchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 359 -NGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 359 -~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
.+||+.+++.++..++. ++..+++||+|+.
T Consensus 330 ~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrw 360 (742)
T TIGR01299 330 FHSWRVFVIVCAFPCVFA-IGALTFMPESPRF 360 (742)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHcCCCHHH
Confidence 26999988877765554 4446778988753
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=240.67 Aligned_cols=170 Identities=13% Similarity=0.164 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.++.++.........+.+|.+ .+++|++..+.|+..+++.++..++++++|+++||+|||++++.+.++.+++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 103 (394)
T PRK10213 25 VAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS 103 (394)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence 3334344444444455666664 456999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.++++|++.|++.|. .+...+++.|++|++ ++++++...+.++|.++||++++++.+.. |||+.|++.++
T Consensus 104 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~ 182 (394)
T PRK10213 104 FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAV 182 (394)
T ss_pred HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHH
Confidence 999999999999999999986 888899999999875 45689999999999999999999999887 99999999887
Q ss_pred HHHHHHHHHhhhccc
Q psy3157 371 LFVVNFVYTYWVVTD 385 (822)
Q Consensus 371 ~~li~~ll~~~~~~e 385 (822)
+.++..++.....|+
T Consensus 183 l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 183 MGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHHHHHHHHHHCCC
Confidence 766555443334444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=237.33 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHHHhh
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-TCLFTCIVSYLLLGLY 295 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-~~~ll~~i~~ll~~~a 295 (822)
.+++...+.+...|.++.|+++++|.+..+.|++.+++.++..+.++++|+++||+|||+.++ .+.++.+++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 467777788888999999998889999999999999999999999999999999999988765 4566666777888889
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA----FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra----~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++.+++.|++.|.+.+. .+...++..|+.|+++|. .+....+.++|.++||++++.+.+.. |||+.|++.++
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~f~~~~~ 163 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVMFLTAAL 163 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHHHHHHHH
Confidence 9999999999998877765 677788888988876665 56777788999999999999999886 99999999988
Q ss_pred HHHHHHHHHhhhcccCC
Q psy3157 371 LFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 371 ~~li~~ll~~~~~~e~~ 387 (822)
+.++..++.++++||.+
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 164 AFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 87777766666677644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=236.44 Aligned_cols=171 Identities=18% Similarity=0.299 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
++.+..++...+.+...|+++.|+++++|++..++|++.+...++..+.++++|+++||+|||++++++.++.+++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 56678888888889999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.++++++.+++.|++.|++.+. .+...+++.+++|+ +++++|+.....++|..+||++++++. .. ||++.|++.+
T Consensus 94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~ 171 (400)
T PRK11646 94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGA 171 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHH
Confidence 9999999999999999999885 67788999999976 456799999999999999999999998 44 9999999988
Q ss_pred HHHHHHHHHHhhhccc
Q psy3157 370 ALFVVNFVYTYWVVTD 385 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e 385 (822)
++.++..++..++.|+
T Consensus 172 ~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 172 VLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 8777666554455543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=241.95 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..+++....+...| ++.+++|++..+.|++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++++++
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 5 INYLDRANLSFAAP----MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred HHHHHHHhhhHhHH----HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34455544444444 35567999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
+++.++++|++.|++.+. .+....++.|++|++ ++++++...+..+|.++||++++.+.+.. +||+.|++.+++.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 999999999999999986 888899999999875 45689999999999999999999988886 99999999888877
Q ss_pred HHHHHHhhhcccCC
Q psy3157 374 VNFVYTYWVVTDVK 387 (822)
Q Consensus 374 i~~ll~~~~~~e~~ 387 (822)
+..++.++..++++
T Consensus 160 ~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 160 IWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHhhheecCCC
Confidence 77666555566544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=236.74 Aligned_cols=165 Identities=11% Similarity=0.068 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.........+.+|. +.+++|++..+.+++.+.+.+++.++++++|+++||+|||+++.++.++.+++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~ 89 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL 89 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666665 455699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.+++.|++.|++.|. .+...+++.|++|++.| +++..+....+|..++|.+.+.+.....|||+.|++.+
T Consensus 90 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~ 169 (394)
T PRK03699 90 MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG 169 (394)
T ss_pred HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9999999999999999999986 77788899999987555 46677778889999999999888754349999999888
Q ss_pred HHHHHHHHH
Q psy3157 370 ALFVVNFVY 378 (822)
Q Consensus 370 ~~~li~~ll 378 (822)
++.++..++
T Consensus 170 ~~~~~~~~~ 178 (394)
T PRK03699 170 LVYVAIFIL 178 (394)
T ss_pred HHHHHHHHH
Confidence 877665544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=238.11 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHH
Q psy3157 221 DLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYV 300 (822)
Q Consensus 221 ~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~ 300 (822)
.......+.|.+|. +++++|++..+.|++.+.+.+++.++++++|+++||+|||+++..+++....+.+.....++++.
T Consensus 3 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 3 SQAIWVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred hhHHHHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455666777776 45569999999999999999999999999999999999999877665555444433333479999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 301 IFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 301 l~i~r~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
++++|++.|++.+...+....++|++|++ +|++++...+..+|.++++++++++.+.. |||+.|++.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHH
Confidence 99999999999987566666779999875 45699999999999999999999999886 9999999989888887777
Q ss_pred HhhhcccCCC
Q psy3157 379 TYWVVTDVKK 388 (822)
Q Consensus 379 ~~~~~~e~~~ 388 (822)
.++++||+++
T Consensus 161 ~~~~lp~~p~ 170 (368)
T TIGR00903 161 VLAALPALPF 170 (368)
T ss_pred HHHHcCCCCC
Confidence 7777887653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=251.68 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----hchHHHH
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL-----YKSVYVI 301 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~-----a~s~~~l 301 (822)
.+.+..|. +.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.+++++++++.++.++ +++++.+
T Consensus 47 ~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 47 NFKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred ChhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 33344554 55679999999999999999999999999999999999999999888888777766655 5899999
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHH
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE--NGFFYICCMTSALFVVNF 376 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~--~gw~~~f~i~~~~~li~~ 376 (822)
+++|++.|++.+. .+....++++++|++ ++++|++..+.++|.+++++++.++.... .+|+..|.+.+++.++..
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~ 205 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG 205 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence 9999999999986 788889999999874 55689999999999999999987776542 369999988888877766
Q ss_pred HHHhhhcccCCC
Q psy3157 377 VYTYWVVTDVKK 388 (822)
Q Consensus 377 ll~~~~~~e~~~ 388 (822)
++.+++.++.++
T Consensus 206 i~~~~~~~~~p~ 217 (467)
T PRK09556 206 FIGLRYGSDSPE 217 (467)
T ss_pred HHHHHhCCCChh
Confidence 665555555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=233.86 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l 307 (822)
..+..| ++.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++++++.++++|++
T Consensus 22 ~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (377)
T TIGR00890 22 WTLLAP-PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL 100 (377)
T ss_pred hhhHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 5666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 308 LGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 308 ~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.|++.+. ++.....+.+++|+ |+++.++...+.++|.++++++.+.+.+.. |||+.|++.+++.++..++.+++.++
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 101 ASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999986 77777888899875 566789999999999888777777777765 99999999998888777665556554
Q ss_pred C
Q psy3157 386 V 386 (822)
Q Consensus 386 ~ 386 (822)
+
T Consensus 180 ~ 180 (377)
T TIGR00890 180 P 180 (377)
T ss_pred C
Confidence 3
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=238.82 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..+.+.+......+..+. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~ 94 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC 94 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777775 556799999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYEN-GFFYICCMT 368 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~-gw~~~f~i~ 368 (822)
+++++++.+++.|++.|++.+. .+...+++.|++|++ ++++++...+..+|.++++.+++.+.+..+ +||+.|++.
T Consensus 95 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~ 174 (405)
T TIGR00891 95 GFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFIS 174 (405)
T ss_pred HHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 9999999999999999999986 788899999999864 456899999999999999999999887651 499999876
Q ss_pred HHHHHHHHHHHhhhcccC
Q psy3157 369 SALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 369 ~~~~li~~ll~~~~~~e~ 386 (822)
++..++.. +.....||+
T Consensus 175 ~~~~~~~~-~~~~~~~~~ 191 (405)
T TIGR00891 175 ILPIIFAL-WLRKNIPEA 191 (405)
T ss_pred HHHHHHHH-HHHHhCCCC
Confidence 65544433 334445554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=240.02 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHH-HHHHhh
Q psy3157 231 LVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFF-VRILLG 309 (822)
Q Consensus 231 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i-~r~l~G 309 (822)
.++. +.+++|++..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++++++.+++ .|++.|
T Consensus 41 ~~~~-i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G 119 (455)
T TIGR00892 41 FFKE-LQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG 119 (455)
T ss_pred hHHH-HHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3443 45679999999999999999999999999999999999999999999999999999999999988875 468999
Q ss_pred cccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcc
Q psy3157 310 LFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 310 ig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~ 384 (822)
++.+. .++..+++.+++++ |++++|+.+.+..+|..++|++++.+.+.. |||++|++.+++.++..++.++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 120 LGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred hcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99985 67777888899975 567799999999999999999999999887 9999999999888766655444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=236.57 Aligned_cols=173 Identities=16% Similarity=0.072 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.......+...+|.+. +++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.++++++.+++
T Consensus 10 ~~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 10 IIVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666544 4699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhc-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDIC-VD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMT 368 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~-p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~ 368 (822)
++++|++.++++|+++|+|.+. .+.....+.+.+ |+ |.+++|++.....+|.++||++++++.+.. ||||.|++.
T Consensus 89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~~f~i~ 167 (495)
T PRK14995 89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGSVFLIN 167 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHH
Confidence 9999999999999999999986 677777777776 44 455799999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHhhhcccCC
Q psy3157 369 SALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 369 ~~~~li~~ll~~~~~~e~~ 387 (822)
..+.++..++..+++|+.+
T Consensus 168 ~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 168 VPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 8888877777667777643
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=234.26 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..++...+.+...|.+|.++.+++|.+..+.|++.+++.++++++++++|+++||+|||++++++.++++++.+.+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence 46677888888889999999998888899999999999999999999999999999999999999999998887776655
Q ss_pred Hhh--------chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 293 GLY--------KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 293 ~~a--------~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
.++ .+++.+++.|++.|++.+. .+....++.|++|++ ++++++...+..+|.++||++++.+.+.. ||
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~ 177 (399)
T PRK05122 99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-GL 177 (399)
T ss_pred HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-cH
Confidence 442 2567889999999999986 777788889999764 55688888889999999999999999887 99
Q ss_pred HHHHHHHHHHHHH
Q psy3157 362 FYICCMTSALFVV 374 (822)
Q Consensus 362 ~~~f~i~~~~~li 374 (822)
++.+++.+++.++
T Consensus 178 ~~~~~~~~~~~~~ 190 (399)
T PRK05122 178 AGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 9988876665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=226.23 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+....++...+.....+.+|.|..+ ++.+..+.|++.+++.++.+++++++|+++||+|||++++++.++.+++.++.+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 4456777777777788888877765 899999999999999999999999999999999999999999999888888888
Q ss_pred hhc-----hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 294 LYK-----SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 294 ~a~-----s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
++. +++.+++.|++.|++.+. .+...+++.|++|++ ++++++.+.+..+|.++||++++.+.+.. ||++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~ 161 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWAI 161 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 877 999999999999999986 788899999999874 45689999999999999999999999886 999999
Q ss_pred HHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVY 378 (822)
Q Consensus 366 ~i~~~~~li~~ll 378 (822)
++.++..++..++
T Consensus 162 ~~~~~~~~~~~~~ 174 (365)
T TIGR00900 162 WVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766655544
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=243.33 Aligned_cols=358 Identities=20% Similarity=0.241 Sum_probs=258.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHhhcccch-h
Q psy3157 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK--SVYVIFFVRILLGLFKHT-Q 315 (822)
Q Consensus 239 ~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~--s~~~l~i~r~l~Gig~g~-~ 315 (822)
+++++..+.|++.+.+++|+++++++.|+++||+|.|+++.++.++.++++++.+.+. +++.+++.|+++|++.|. +
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 5889999999999999999999999999999999999999999999999999999875 456778999999999997 9
Q ss_pred hHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q psy3157 316 VLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTRT 393 (822)
Q Consensus 316 ~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~~~~ 393 (822)
+....+.+.|.|+.+| ..++...+..+|.+++-+++|++.+...||+++||+.+++.++..++++++..++|.+.+..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i 226 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI 226 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 9999999999997555 58888889999999999999999998339999999999999999998777777666543321
Q ss_pred CCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccccccchhhhhhhh
Q psy3157 394 SLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYNDADLER 473 (822)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 473 (822)
+ .+|++.
T Consensus 227 s-------------------------------------------------------------------------~~El~~ 233 (466)
T KOG2532|consen 227 S-------------------------------------------------------------------------EKELKY 233 (466)
T ss_pred C-------------------------------------------------------------------------HHHHHH
Confidence 1 112211
Q ss_pred hhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCCCCCcchhhhhcccCCCCCCCChhh
Q psy3157 474 LFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESSDVNPLLQEEIDMDMGNDRPRDIKE 553 (822)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (822)
+.+. +.++.. ++
T Consensus 234 I~~~---------------------------k~~~~~-----------------------------------------~~ 245 (466)
T KOG2532|consen 234 IEKG---------------------------KSEAHV-----------------------------------------KK 245 (466)
T ss_pred HHhc---------------------------cccccc-----------------------------------------CC
Confidence 1000 000000 00
Q ss_pred hhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEehhhhh
Q psy3157 554 ERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLV 633 (822)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~ 633 (822)
. .+. .+..+++. ..+|.+++..+...++...+..+.|.|+.+.+|++.++.|++.+++.++
T Consensus 246 ~--------~~v-----P~~~i~ts------~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~ 306 (466)
T KOG2532|consen 246 K--------PPV-----PYKAILTS------PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLA 306 (466)
T ss_pred C--------CCC-----CHHHHHcC------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHH
Confidence 0 000 01111111 2358899999999999999999999999999999999999999999999
Q ss_pred ccccceeee-eccc-Cc-------cchh--HHHHHHHHHHHHHHHhhh--HHHHHHHHHHhhhccccCCCCccccccccc
Q psy3157 634 GSFSNVLIH-IDSR-NS-------YSSL--YYSFILLTVSILALYVSV--NLYLFVLLLVSCKKFKEGEEKPKWAKKDLS 700 (822)
Q Consensus 634 ~~v~~i~~G-~~~~-~~-------~~~l--~~~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 700 (822)
..+..++.| +.++ .. ++++ .+++...++.++.+.+.. ..+..++++.....+.+.
T Consensus 307 ~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~------------ 374 (466)
T KOG2532|consen 307 MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGF------------ 374 (466)
T ss_pred HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHccc------------
Confidence 999999999 3332 11 2223 334444444455555444 222333333222211100
Q ss_pred cccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhhhhhhhccchhhhH
Q psy3157 701 FYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSIAKVITPLLGGII 780 (822)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~lg~~igP~i~G~i 780 (822)
.+.+...+..+. .++.++ .++|+.|++.+++++++|.+.|.+
T Consensus 375 ----------------------~~~Gf~~~~~~~-----------apq~a~-----~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 375 ----------------------NISGFYKNHQDI-----------APQHAG-----FVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred ----------------------chhhhHhhhhhc-----------cchHHH-----HHHHHHHHHHHHHHHHHHHheeeE
Confidence 111221111110 122245 799999999999999999999998
Q ss_pred h-hhccCcccchhhHHHHHHHHHHhhh
Q psy3157 781 S-DWVQDNYKVTFLVAFLFGAVGVVTT 806 (822)
Q Consensus 781 ~-d~~~~~~~~~f~~~~~~~l~~~~~~ 806 (822)
. |.+-.+|..+|++.+++.+++.++.
T Consensus 417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 417 VTDNTREEWRIVFLIAAGILIVGNIIF 443 (466)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence 8 4444578999999999999888763
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=232.66 Aligned_cols=397 Identities=14% Similarity=0.129 Sum_probs=261.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHhh
Q psy3157 231 LVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFV-RILLG 309 (822)
Q Consensus 231 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~-r~l~G 309 (822)
.+-..++++++.+..+++|+.++......+.+|+.+.+.||+|.|.+.++|.++.+++.++..++++++.+++. .++.|
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G 146 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG 146 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 44445677899999999999999999999999999999999999999999999999999999999999988875 78899
Q ss_pred cccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 310 LFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 310 ig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+|.|. +.+...++..+|++ |..++|+...+.++|.++-|.+..++.+.. |||+.+++.+.+.+..++......|...
T Consensus 147 ~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp~~~ 225 (509)
T KOG2504|consen 147 LGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRPLSP 225 (509)
T ss_pred ccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99996 88889999999986 678899999999999999999999999998 9999999999998777777666655443
Q ss_pred CCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccccccchh
Q psy3157 388 KYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYN 467 (822)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 467 (822)
...+. ..+..+ . .+
T Consensus 226 ~~~~~-~~~~~~-------~-------------------------------------------------~~--------- 239 (509)
T KOG2504|consen 226 PKKPN-EEKDLR-------N-------------------------------------------------SA--------- 239 (509)
T ss_pred CCCch-hhhhhc-------c-------------------------------------------------cc---------
Confidence 32221 000000 0 00
Q ss_pred hhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCCCCCcchhhhhcccCCCCC
Q psy3157 468 DADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESSDVNPLLQEEIDMDMGNDR 547 (822)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (822)
.+.+. .......+.+..+. ...+. ...
T Consensus 240 -~~~~~--------------------------~~~~~~~~~~~~~~----------------~~~~~-------~~~--- 266 (509)
T KOG2504|consen 240 -ASVES--------------------------TPKPVELRISERDS----------------GLKKL-------SLS--- 266 (509)
T ss_pred -ccccc--------------------------cccccccccccCCC----------------CCCcc-------ccc---
Confidence 00000 00000000000000 00000 000
Q ss_pred CCChhhhhhhcccccccccccchhhh----hhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccCCCccce
Q psy3157 548 PRDIKEERHVEKDSRARVSLSQSSFL----TYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVT 623 (822)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~ 623 (822)
.....++..++ .+....+..+. +.+++ ..++.+.+...+..++.......++.|.. ..|++..++
T Consensus 267 -~~~~~~~~~~~---~~~~~~~~~~~~~d~~ll~~------~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~a 335 (509)
T KOG2504|consen 267 -NLATLKRGPDK---WRNSPLQAFLSMLDLSLLKD------PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDA 335 (509)
T ss_pred -chhhhhhCCcc---ccccchhhhhhhhhHHHHcC------chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhh
Confidence 00000000000 00000000010 11111 23344444445555555555666777776 679999999
Q ss_pred eeEEehhhhhccccceeee-ecccCccchh-H--HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccCCCCcccccccc
Q psy3157 624 GYTVSFQGLVGSFSNVLIH-IDSRNSYSSL-Y--YSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDL 699 (822)
Q Consensus 624 g~l~si~gi~~~v~~i~~G-~~~~~~~~~l-~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 699 (822)
++++++.++.++++++++| +.++...+.. . .+.++.+++.+.+++..+.+.++...++.+...+.
T Consensus 336 a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~----------- 404 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGS----------- 404 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----------
Confidence 9999999999999999999 4444443333 3 33333444444555666665555555444422211
Q ss_pred ccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhhhhhhhccchhhh
Q psy3157 700 SFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSIAKVITPLLGGI 779 (822)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~lg~~igP~i~G~ 779 (822)
...+.. ....+..|.++.++++|+...+.+++.++||+++|+
T Consensus 405 -------~~~l~~-------------------------------~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~ 446 (509)
T KOG2504|consen 405 -------FSSLTP-------------------------------VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL 446 (509)
T ss_pred -------HHHHHH-------------------------------HHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence 001110 123344677888889999999999999999999999
Q ss_pred HhhhccCcccchhhHHHHHHHHHHhhhee
Q psy3157 780 ISDWVQDNYKVTFLVAFLFGAVGVVTTRV 808 (822)
Q Consensus 780 i~d~~~~~~~~~f~~~~~~~l~~~~~~~~ 808 (822)
+.|.++ +|...|+.++++.+++.+++..
T Consensus 447 ~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 447 LYDITG-NYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred eeeccC-CeeeehhhcChHHHHHHHHHHH
Confidence 999997 6999999999999988876433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=227.08 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..++...+.+...|.+|.++.+++|+|..++|++.+++.+++.++++++|+++||+|||++++++.+...++.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (392)
T PRK12382 19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY 98 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 45556677777888889999998888899999999999999999999999999999999999999999888776655432
Q ss_pred H---h-----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 293 G---L-----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 293 ~---~-----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
. + ..+++.++++|+++|++.+. .+...+++.|++|++ ++++++...+..+|.++||++++++.+.. ||
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~ 177 (392)
T PRK12382 99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GF 177 (392)
T ss_pred HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-Ch
Confidence 2 1 35788999999999999986 777788999999864 55789999999999999999999998876 99
Q ss_pred HHHHHHHHHHH
Q psy3157 362 FYICCMTSALF 372 (822)
Q Consensus 362 ~~~f~i~~~~~ 372 (822)
++.+.+..++.
T Consensus 178 ~~~~~~~~~~~ 188 (392)
T PRK12382 178 AALALTTMVLP 188 (392)
T ss_pred HHHHHHHHHHH
Confidence 98776654443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=225.20 Aligned_cols=173 Identities=18% Similarity=0.269 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSL-LQIISAPTVGYLSDLYGRKTIL-LTCLFTCIVSYL 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~ig~~~~G~LsDr~Grr~~l-~~~~ll~~i~~l 290 (822)
...+..++...+.....|.++.|+.+++|++.+++|++.+...+ +..++++++|+ +||+|||+.+ ..+.++.+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999876655 55555555555 9999999875 455666667777
Q ss_pred HHHhhchHHHHHHHHHHhhcccc-hhhHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 291 LLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDSTKA----FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 291 l~~~a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~~ra----~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
+.+++++++.+++.+.+.|...+ ..+...+++.++.++++|. .++.+.+.++|.++||++++++.+.. |||+.|
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f 176 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMY 176 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHH
Confidence 78888999887766555444333 4677788888888776664 36777888999999999999999887 999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCC
Q psy3157 366 CMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~~~e~~ 387 (822)
++.+++.++..++.++++|+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccC
Confidence 9998888777766666677643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=230.04 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=127.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh----chHHHHHHHH
Q psy3157 230 PLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY----KSVYVIFFVR 305 (822)
Q Consensus 230 ~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a----~s~~~l~i~r 305 (822)
..+| ++.++ |++..+.|++.+.+.++++++++++|+++||+|||++++++.++++++.++++++ .+++.+++.|
T Consensus 50 ~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
T PRK11273 50 LAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 127 (452)
T ss_pred HhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 3344 56666 9999999999999999999999999999999999999999999999998888775 3788889999
Q ss_pred HHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Q psy3157 306 ILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFF-IGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYW 381 (822)
Q Consensus 306 ~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~-igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~ 381 (822)
++.|++.|. .+.....+.+++|++ ++++|+++.+.++|.. ++|+++..+.... +||+.|++.+++.++..++..+
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886 677778889999875 4468888888888864 5565544444343 9999999998887777666667
Q ss_pred hcccCCC
Q psy3157 382 VVTDVKK 388 (822)
Q Consensus 382 ~~~e~~~ 388 (822)
++|++++
T Consensus 207 ~~~~~~~ 213 (452)
T PRK11273 207 MMRDTPQ 213 (452)
T ss_pred HccCCHh
Confidence 7776553
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=232.61 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
+..++.........|.+|. +.+++|++..+.+++.+.+.+++.++++++|+++||+|||+++.++.++++++.++++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~-l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPI-IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555666664 566799999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHh----c----ccchHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIH----Y----ENGFFYIC 365 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~----~----~~gw~~~f 365 (822)
++++.++++|++.|++.+...+...++++++|++ ++++|+.+.+.++|..+++.+.+.+.. . ..|||++|
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 9999999999999998876445667889999864 556888877777777777666554432 2 12899999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy3157 366 CMTSALFVVNFVYTYWV 382 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~ 382 (822)
++.+++.++..++.+++
T Consensus 202 ~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 202 FVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887776665444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=229.15 Aligned_cols=167 Identities=19% Similarity=0.252 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..+.+........| ++.+++|++..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.++.++++
T Consensus 6 ~~~~~~~~~~~~~~----~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 6 AYYLVRKNFALAMP----YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred HHHHhHHhhhhhhH----HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 34444444444444 45567999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGP-AIGGHVIHYENGFFYICCMTSALF 372 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp-~l~g~l~~~~~gw~~~f~i~~~~~ 372 (822)
+++.+++.|++.|++.+. .+...+++.|++|++ ++++++.+.+..+|.+++| .+++.+.+.. +|++.|++.+++.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVPGIIA 160 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 999999999999999986 888899999999975 4468889999999999999 4666666665 9999999988887
Q ss_pred HHHHHHHhhhcccCCC
Q psy3157 373 VVNFVYTYWVVTDVKK 388 (822)
Q Consensus 373 li~~ll~~~~~~e~~~ 388 (822)
++..++.+++.+++++
T Consensus 161 ~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHHheeeCCCcc
Confidence 7766665666665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=227.47 Aligned_cols=171 Identities=16% Similarity=0.331 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.++++.++.....+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 4566677777777788888887776 599999999999999999999999999999999999999999999999999998
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.++++++.+++.|+++|++.+. .+...+++.|++|++. +++|+...+.++|.++||.++|.+.+.. |||+.|++..
T Consensus 93 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f~~~~ 171 (471)
T PRK10504 93 ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINI 171 (471)
T ss_pred HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999986 7888999999999754 4688899999999999999999999887 9999999988
Q ss_pred HHHHHHHHHHhhhccc
Q psy3157 370 ALFVVNFVYTYWVVTD 385 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e 385 (822)
++..+..++.....|+
T Consensus 172 ~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 172 PVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8777666665555554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=224.42 Aligned_cols=172 Identities=24% Similarity=0.369 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFT-----IGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIV 287 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~-----~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i 287 (822)
.+.+..++...+.+...|.+|.+.++ +|++..+ .|++.+++.++..++++++|+++||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34556677777778888999988765 8887544 48899999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 288 SYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 288 ~~ll~~~a~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
+.+++.++++++.+++.|++.|++.+..+....++.+++|++ ++++++...+..+|.++||++++.+.+.. +|++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~ 175 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRPVF 175 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 999888899999999999999998666667778888988864 55688999999999999999999998876 999999
Q ss_pred HHHHHHHHHHHHHHhhhcccC
Q psy3157 366 CMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~~~e~ 386 (822)
++.+++.++..++.+++.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999888777766656666554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=223.52 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q psy3157 212 HKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll 291 (822)
+.+....++...+.+...|+++.|+++++|++..++|++.+++.++..++++++|+++||+|||++++++.++.+++.++
T Consensus 10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 35667788888889999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMT 368 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~ 368 (822)
.+++++++.+++++++.|.+.+. .+...+++.|.+|++ ++++|+.....++|.++||++++++.. . +|+.+|++.
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~ 167 (395)
T PRK10054 90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLA 167 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHH
Confidence 99999999998888888877665 677788999999864 456899999999999999999999875 4 899999998
Q ss_pred HHHHHHHHHHHhhhcccC
Q psy3157 369 SALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 369 ~~~~li~~ll~~~~~~e~ 386 (822)
+++.++..++..+++|++
T Consensus 168 ~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888777666555555543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=229.51 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
....++..++.....+.+|.+.++ ++.+..+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 344566666777777778876665 7789999999999999999999999999999999999998888777776655432
Q ss_pred -----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy3157 295 -----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICC 366 (822)
Q Consensus 295 -----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~ 366 (822)
.++++.+++.|++.|++.+. .+...+++.+++|++ +++.++.....++|.++||.+++.+.+.. +|++.|+
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~ 180 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYG 180 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHH
Confidence 46788899999999999886 677788999999874 55688888999999999999999998876 8999998
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q psy3157 367 MTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 367 i~~~~~li~~ll~~~~~~e~ 386 (822)
+.++..++..++ .+.+|+.
T Consensus 181 ~~~~~~~~~~~~-~~~l~~~ 199 (417)
T PRK10489 181 LAAAGTFITLLP-LLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHH-HHhCCCC
Confidence 877776655544 3445543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=224.24 Aligned_cols=170 Identities=14% Similarity=0.057 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
...++.++...+.+...++++.+++ ++|.+..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667777787775 589999999999999999999999999999999999999999999988887654
Q ss_pred H---h-hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHH-HHHHHHHHHHHhcccchHHH
Q psy3157 293 G---L-YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGF-FIGPAIGGHVIHYENGFFYI 364 (822)
Q Consensus 293 ~---~-a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~-~igp~l~g~l~~~~~gw~~~ 364 (822)
. + ..+++.+++.|++.|++.+. .+...+.+.+++|+ |++++|+...+.++|. ++||++++.+.+.. ||+..
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~ 174 (402)
T TIGR00897 96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNT 174 (402)
T ss_pred HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHH
Confidence 3 3 35788889999999999875 66677788888875 4567999999999996 68999999988776 76665
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy3157 365 CCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~ 384 (822)
++......++..++..++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 175 LWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 55444433333333333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=225.28 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..+.+.+......+.+|. +.+++|++..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 100 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666664 556799999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.++++|++.|++.|. ++....++.|++|++ ++++++...+..+|.+++|.+.+.+.+.. +||+.|++.+
T Consensus 101 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~~~f~i~~ 179 (426)
T PRK12307 101 GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWRAAFFVGL 179 (426)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHHHHHHHHH
Confidence 9999999999999999999986 888899999999875 45688999999999999999999888876 9999998754
Q ss_pred HH
Q psy3157 370 AL 371 (822)
Q Consensus 370 ~~ 371 (822)
+.
T Consensus 180 ~~ 181 (426)
T PRK12307 180 LP 181 (426)
T ss_pred HH
Confidence 33
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=224.11 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++...+...+.|.++.+. +++|.+..+.++..+.+.+++.+++++.|+++||+|||++++++.++.+++.++..
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 18 LVLFEFATYIANDMIQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL 96 (406)
T ss_pred HHHHHHHHHhhhhhHhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 34444555556677778888644 56999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.+++.|++.|++.+. .+...+++.|++|++. ++.++......+|..+||.+++.+.+.. +||++|++.++
T Consensus 97 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~~~~~~~~ 175 (406)
T PRK15402 97 LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-PWRGMFVLFAA 175 (406)
T ss_pred HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHH
Confidence 999999999999999999886 6778899999998754 4578877788889999999999998876 99999999888
Q ss_pred HHHHHHHHHhhhcccC
Q psy3157 371 LFVVNFVYTYWVVTDV 386 (822)
Q Consensus 371 ~~li~~ll~~~~~~e~ 386 (822)
+.++..+..++..||+
T Consensus 176 ~~~~~~~~~~~~~~~~ 191 (406)
T PRK15402 176 LAALSFFGLWRAMPET 191 (406)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8877766555555554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=220.95 Aligned_cols=360 Identities=14% Similarity=0.120 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH-HHHHHHH-H
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCL-FTCIVSY-L 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~-ll~~i~~-l 290 (822)
.+.+.++....+.+...|++|.|+++ +|++..++|++.+++.+...++++++|+++||+||+....... +...+.. .
T Consensus 8 ~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 8 WLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 45667777778889999999998875 8999999999999999999999999999999999854332211 1111121 2
Q ss_pred HHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 291 LLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 291 l~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.+..+++++.+++.|++.|.+.+. .+...++..++..++++++|....+.++|.++||++++.+.+.. |||+.|++.+
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~f~~~~ 165 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNILAILT 165 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHH
Confidence 344678999999999999988875 77777777666444677899999999999999999999999987 9999998876
Q ss_pred HHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q psy3157 370 ALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKF 449 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 449 (822)
++.++. ++ .+.++++++++.+.. + .
T Consensus 166 ~~~~~~-~~-~~~~~~~~~~~~~~~-~--~-------------------------------------------------- 190 (382)
T TIGR00902 166 AGLAFM-LI-GFLIKPTIPPKDAIP-E--D-------------------------------------------------- 190 (382)
T ss_pred HHHHHH-HH-HHHcCCCCCCCcccc-c--c--------------------------------------------------
Confidence 553322 22 223332211100000 0 0
Q ss_pred hcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCC
Q psy3157 450 KEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESS 529 (822)
Q Consensus 450 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (822)
.. +.
T Consensus 191 -------------------------------------------------------~~--~~------------------- 194 (382)
T TIGR00902 191 -------------------------------------------------------ES--QG------------------- 194 (382)
T ss_pred -------------------------------------------------------cc--cc-------------------
Confidence 00 00
Q ss_pred CCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhH
Q psy3157 530 DVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYI 609 (822)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 609 (822)
.....+.++ .+.+|.+.+..++...+...++++++
T Consensus 195 ---------------------------------------~~~~~~~l~------~~~~~~~l~~~~l~~~~~~~~~~~~~ 229 (382)
T TIGR00902 195 ---------------------------------------DSAFIALLK------NPMNLRFLAAVCLIQGAHAAYYGFSA 229 (382)
T ss_pred ---------------------------------------chhHHHHHc------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001 12346666777777788888889999
Q ss_pred HhhhcccCCCccceeeEEehhhhhccccceeee-ec-ccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-cc
Q psy3157 610 SVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-ID-SRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKK-FK 686 (822)
Q Consensus 610 ~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~-~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-f~ 686 (822)
.|+++ .|.++.+.|++.++..+..+++.++.+ +. +.+.++.+..+.++.++..+.+.+.++.+...+..++-+. |+
T Consensus 230 ~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 230 IYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred HHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 99977 799999999998888888888888887 43 4455555677777777777777777776655554433221 11
Q ss_pred cCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHH-H
Q psy3157 687 EGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNS-L 765 (822)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~-~ 765 (822)
++. +..+..+.+.+++.++ +.+|++++ .
T Consensus 309 ------------------------------------~~~--------------~~~~~~i~~~~~~~~~-~~q~~~~~~~ 337 (382)
T TIGR00902 309 ------------------------------------VCH--------------LAAMRYIAAQPGSEIA-KLQALYNALA 337 (382)
T ss_pred ------------------------------------HHH--------------HHHHHHHHhCCHhhHH-HHHHHHHHHH
Confidence 000 0011112222333333 58999874 5
Q ss_pred hhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 766 TSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 766 ~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
.++|.++||.++|+++|..| + ..|.+.+++.++++++
T Consensus 338 ~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 338 MGGLIAIFTAFAGFIYPTLG--A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHH
Confidence 78999999999999999985 3 3355555655666543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=220.40 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q psy3157 212 HKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll 291 (822)
+.+.++.++.....+...|.+|.+..+ +|.|..++|++.+.+.++..++++++|+++||+|||+++.++.++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888899999987775 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
++++++++.++++|++.|++.+. .+.....+.+..++ |+|+++++..+.++|..+||.+++.+.+.
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999986 67777777777765 45678999999999999999999998765
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-23 Score=236.52 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=130.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHhhcccch-h
Q psy3157 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY--KSVYVIFFVRILLGLFKHT-Q 315 (822)
Q Consensus 239 ~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a--~s~~~l~i~r~l~Gig~g~-~ 315 (822)
+++++..+.|++.+.+.+++.++++++|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+. .
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 588999999999999999999999999999999999999999999999988887554 5688899999999999986 8
Q ss_pred hHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 316 VLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 316 ~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+....++.|++|++ ++++|+...+..+|.+++|++++.+.+...|||+.|++.+++.++..++.+++.++.+
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p 223 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP 223 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence 88999999999975 4568999999999999999999999876238999999999888777766555555544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-22 Score=230.20 Aligned_cols=172 Identities=15% Similarity=0.307 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++..+......+.+|.+. +++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777777654 4699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.++++|+++|++.+. .+...+++.|++|++ +++++++..+..+|..+||.+++++.+.. +||+.|++.+
T Consensus 85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~ 163 (485)
T TIGR00711 85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWRWIFLINV 163 (485)
T ss_pred hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cceehhhhhh
Confidence 9999999999999999999986 788899999999875 45689999999999999999999999886 9999999988
Q ss_pred HHHHHHHHHHhhhcccC
Q psy3157 370 ALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~ 386 (822)
++.++..++..++.|++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 88877776666666653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=226.70 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=128.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHhhc
Q psy3157 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY----KSVYVIFFVRILLGL 310 (822)
Q Consensus 235 ~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a----~s~~~l~i~r~l~Gi 310 (822)
++++ +|++..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.++. .+++.+++.|++.|+
T Consensus 52 ~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 130 (438)
T TIGR00712 52 YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW 130 (438)
T ss_pred HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 4555 69999999999999999999999999999999999999999999999888877664 467788889999999
Q ss_pred ccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 311 FKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 311 g~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+.|. ++.....+.|++|++ ++++|+++.+.++|..++|.+.+.+.....+||+.|++.+++.++..++.++++||++
T Consensus 131 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 131 FQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 9886 777888999999864 5568999999999999999887765553338999999999888877766666777654
Q ss_pred C
Q psy3157 388 K 388 (822)
Q Consensus 388 ~ 388 (822)
+
T Consensus 211 ~ 211 (438)
T TIGR00712 211 Q 211 (438)
T ss_pred H
Confidence 3
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=230.82 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLS--------NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVS 288 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s--------~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~ 288 (822)
..++..+......+.++... .+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.++++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~ 114 (481)
T TIGR00879 36 GGLMFGYDTGVIGGALALPA-FEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG 114 (481)
T ss_pred HHHhcccccchhhhhhhcHH-HHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHH
Confidence 33333333444444444332 235555 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhh---chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHH---HHHHhccc
Q psy3157 289 YLLLGLY---KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIG---GHVIHYEN 359 (822)
Q Consensus 289 ~ll~~~a---~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~---g~l~~~~~ 359 (822)
.+++.+. .+++.++++|++.|++.+. .+...++++|++|++ ++++++++.+..+|.++||+++ +.+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~- 193 (481)
T TIGR00879 115 AILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL- 193 (481)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc-
Confidence 8888654 3456899999999999986 788899999999875 4568899999999999999998 5554554
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 360 GFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 360 gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+||+.|++.++..++.. +..+++||++
T Consensus 194 ~w~~~f~~~~~~~~~~~-~~~~~l~~~~ 220 (481)
T TIGR00879 194 GWRIPLGLQLIPAGLLF-LGLFFLPESP 220 (481)
T ss_pred cHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence 99999999665554443 3455667654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=212.83 Aligned_cols=339 Identities=22% Similarity=0.265 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..+..........+..+.+.++ +|.+..+.+++.+...++..++++++|+++||+|||+.+.++.++..++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 44556677777777788888877664 79999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.++++++.+++.|++.|++.+. .+...+++.|++|++. +.+++...+..+|..+||.+++.+.+.. +|++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFLILA 160 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 9999999999999999999986 8889999999998754 4689999999999999999999999886 8999999988
Q ss_pred HHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q psy3157 370 ALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKF 449 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 449 (822)
++.++..++..+. +
T Consensus 161 ~~~~~~~~~~~~~-~----------------------------------------------------------------- 174 (352)
T cd06174 161 ILGLLLALLLLFL-L----------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHH-H-----------------------------------------------------------------
Confidence 8877766553322 1
Q ss_pred hcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcccCCC
Q psy3157 450 KEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFSLESS 529 (822)
Q Consensus 450 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (822)
T Consensus 175 -------------------------------------------------------------------------------- 174 (352)
T cd06174 175 -------------------------------------------------------------------------------- 174 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhhhhhH
Q psy3157 530 DVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYI 609 (822)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 609 (822)
+.++...+..++.......+..+.+
T Consensus 175 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 175 -------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0013344455556666667777888
Q ss_pred HhhhcccCCCccceeeEEehhhhhccccceeee--ecccCccc-hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccc
Q psy3157 610 SVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYS-SLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFK 686 (822)
Q Consensus 610 ~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~-~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 686 (822)
.++.+.+|.+..+.+.+.++.+++..++.++.+ .++.++++ .+..+..+..++.+.+....+.+...+...+.+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (352)
T cd06174 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGL 279 (352)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999 34445555 566677777777666665555444444333333211
Q ss_pred cCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHh
Q psy3157 687 EGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLT 766 (822)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~ 766 (822)
+..... ...+. .+..+++..++++|+.+...
T Consensus 280 ~~~~~~------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 280 GFAFPA------------------------------------------------LLTLA-SELAPPEARGTASGLFNTFG 310 (352)
T ss_pred hccchh------------------------------------------------HHHHH-HhhcCHHHHHHHHHHHHHHH
Confidence 110000 00011 11122233336999999999
Q ss_pred hhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 767 SIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 767 ~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
+++..++|.++|++.|.. ++...|++.+++.+++.++
T Consensus 311 ~~~~~i~~~i~g~l~~~~--~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 311 SLGGALGPLLAGLLLDTG--GYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHHHhccc--CcchHHHHHHHHHHHHHHH
Confidence 999999999999999865 4666688888877777665
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=219.46 Aligned_cols=171 Identities=15% Similarity=0.182 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
.+..+..........|.+|. +.++++.+..+.++..+++.++++++++++|+++||+|||++++++.++++++.+++.+
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777788886 55569999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 295 YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 295 a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
+++++.++++|+++|++.+. .+...+++.|++|++ .|+++++..+..+|.++||++++.+.+.. |||+.|++.+++
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~~f~~~~~~ 179 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAIIAVM 179 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 99999999999999999875 566678899999864 56789999999999999999999998876 999999999988
Q ss_pred HHHHHHHHhhhcccCC
Q psy3157 372 FVVNFVYTYWVVTDVK 387 (822)
Q Consensus 372 ~li~~ll~~~~~~e~~ 387 (822)
.++..++.++.+||++
T Consensus 180 ~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 180 GLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 8777666556667654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=223.69 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQV--LLSNFTIGAIA-----STFSLLQIISAPTVGYLSDLYGRKTILLTCLFTC 285 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~--g~s~~~~g~~~-----s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~ 285 (822)
...++.+++.+.........+.+..+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++.++.+++
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~ 104 (438)
T PRK09952 26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3445666666666555555554555544 66665 45543 3455667889999999999999999999999999
Q ss_pred HHHHHHHHhhchHH--------HHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 286 IVSYLLLGLYKSVY--------VIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHV 354 (822)
Q Consensus 286 ~i~~ll~~~a~s~~--------~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l 354 (822)
+++++++++++++. .++++|+++|++.|. ++....++.|++|++.| ..+....+..+|.++++.+...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 105 GIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986 588899999999986 88889999999998656 46777778888888887776665
Q ss_pred Hh--------cccchHHHHHHHHHHHHH
Q psy3157 355 IH--------YENGFFYICCMTSALFVV 374 (822)
Q Consensus 355 ~~--------~~~gw~~~f~i~~~~~li 374 (822)
.. .. |||+.|++.+++.++
T Consensus 185 ~~~~~~~~~~~~-gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 185 SMMTTDEQFLSW-GWRIPFLFSIVLVLI 211 (438)
T ss_pred HHhCCHHHhhcc-ChHHHHHHHHHHHHH
Confidence 53 33 899999987766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=217.60 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
.....+....+.....+.+|.+.+ ++|.+..+.++..+.+.++..+++++.|+++||+|||++++++.++.+++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAA-DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 444555666666677788886554 5999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.+++.|++.|++.+. .+...+++.|++|++. +++++.+....+|.+++|.+++.+.+.. +|++.|++.++
T Consensus 87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~ 165 (392)
T PRK10473 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAA 165 (392)
T ss_pred HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHH
Confidence 999999999999999999886 7788999999998754 4588888888999999999999988776 99999999988
Q ss_pred HHHHHHHHHhhhcccCC
Q psy3157 371 LFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 371 ~~li~~ll~~~~~~e~~ 387 (822)
+.++..++..+.+||++
T Consensus 166 ~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 166 MGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88777776666666543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=211.98 Aligned_cols=363 Identities=17% Similarity=0.220 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
++..++...++.....+.+...+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+
T Consensus 18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 44555555566566666666677789999999999999999999999999999999999999999999999999999998
Q ss_pred hhch---HHHHHHHHHHhhcccchhhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hHHHH
Q psy3157 294 LYKS---VYVIFFVRILLGLFKHTQVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENG---FFYIC 365 (822)
Q Consensus 294 ~a~s---~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~g---w~~~f 365 (822)
++.+ ++.+++++.+.|++.|.+.+...+++.++|++. .++|++. +.++|..+..+++-.++... + |+.+.
T Consensus 98 ~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~ 175 (417)
T COG2223 98 FAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVA 175 (417)
T ss_pred HHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence 8754 459999999999999988899999999999854 4688887 88888888888887777776 6 99999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVS 445 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 445 (822)
.+..+..++..++.++...+.+..++... +..
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d~p~~r~~~~--~~~---------------------------------------------- 207 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMNDVPEHRASVK--PQL---------------------------------------------- 207 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhcccc--ccc----------------------------------------------
Confidence 99888888888877777655443211100 000
Q ss_pred HHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcc
Q psy3157 446 CKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFS 525 (822)
Q Consensus 446 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (822)
. .+
T Consensus 208 -----------------------~--~~---------------------------------------------------- 210 (417)
T COG2223 208 -----------------------P--AQ---------------------------------------------------- 210 (417)
T ss_pred -----------------------h--hH----------------------------------------------------
Confidence 0 00
Q ss_pred cCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhh
Q psy3157 526 LESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFY 605 (822)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 605 (822)
-+...++ +..|.+.+.++...-++..+-
T Consensus 211 ----------------------~~~v~~~------------------------------~~~W~lsllY~~tFG~Fvgfs 238 (417)
T COG2223 211 ----------------------LKAVFSN------------------------------KDTWLLSLLYFATFGGFVGFS 238 (417)
T ss_pred ----------------------HHHHhcC------------------------------cchHHHHHHHHHHHHHHHHHH
Confidence 0000000 123888888888888888888
Q ss_pred hhhHHhhhcccCCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhh-------HHHHHH
Q psy3157 606 SNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSV-------NLYLFV 676 (822)
Q Consensus 606 ~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~-------~~~~~~ 676 (822)
.++|.|++++||.++.++|...+...+.+.+.+.+.| .|+.+..+.+...++.++++..++.+.. +...+.
T Consensus 239 ~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 318 (417)
T COG2223 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFV 318 (417)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHH
Confidence 9999999999999999999999999999999999999 4444777777777777777666555432 223333
Q ss_pred HHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccc
Q psy3157 677 LLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGS 756 (822)
Q Consensus 677 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 756 (822)
...+....+.+ +|+++..- ..|. .-++..|
T Consensus 319 ~~~l~l~~~~G------------------------------~GnGsvfk------~Ip~---------if~~~~G----- 348 (417)
T COG2223 319 AVFLALFVFAG------------------------------LGNGSVFK------MIPV---------IFPKETG----- 348 (417)
T ss_pred HHHHHHHHHhc------------------------------cCcchhee------echH---------HHHhhhh-----
Confidence 22222221111 12222111 1111 1122344
Q ss_pred hhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhh
Q psy3157 757 NISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTT 806 (822)
Q Consensus 757 ~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~ 806 (822)
.+.|++..++++|+..-|...|...|.|| .|...|++...+.+++.+++
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999998 78888888888888887764
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=220.05 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.+..+++.+......+.+|. +.+++|++..+.+++.+.+.++++++++++|+++||+|||++++++.++.+++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 102 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLAC 102 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666676665 556799999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.+++.|++.|++.+. .+...+++.|++|++. ++++++..+..+|.+++|.+++.+.+.. +||+.|++.+
T Consensus 103 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~f~~~~ 181 (496)
T PRK03893 103 GFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GWRALFFIGI 181 (496)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHH
Confidence 9999999999999999999886 7888899999998754 5688999999999999999999999886 9999998754
Q ss_pred HHH
Q psy3157 370 ALF 372 (822)
Q Consensus 370 ~~~ 372 (822)
+..
T Consensus 182 ~~~ 184 (496)
T PRK03893 182 LPI 184 (496)
T ss_pred HHH
Confidence 433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=220.31 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQV---LLSNFTIGAI---ASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSY 289 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~---g~s~~~~g~~---~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ 289 (822)
++.+++.+....+.... .++.+++ +.+..+.+.. .+..+++..++++++|+++||+|||+++.++.+++++++
T Consensus 29 ~~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCS-LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44555555555433333 3555566 3555544443 444555556999999999999999999999999999999
Q ss_pred HHHHhhchHH--------HHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHh--
Q psy3157 290 LLLGLYKSVY--------VIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIH-- 356 (822)
Q Consensus 290 ll~~~a~s~~--------~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~-- 356 (822)
+++++++++. .++++|+++|++.|. ++...++++|++|++.| +.++...+..+|.+++++++..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 108 LVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988763 588899999999986 89999999999997555 4677777777788887776655432
Q ss_pred ------cccchHHHHHHHHHHHHHH
Q psy3157 357 ------YENGFFYICCMTSALFVVN 375 (822)
Q Consensus 357 ------~~~gw~~~f~i~~~~~li~ 375 (822)
.. |||++|++.+++.++.
T Consensus 188 ~~~~~~~~-gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 188 EDAELREW-GWRIPFALGAVLAVVA 211 (432)
T ss_pred CHHHHhcc-chHHHHHHHHHHHHHH
Confidence 33 9999999877766554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=213.98 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++...+.....|.+|.+ .+++|.+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3344455566677777888864 456999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.+++.|++.|++.+. .+...+++.|++|++ ++++++.+....+|..+||.+++.+.+.. +||+.|++.++
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~ 167 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLSL 167 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 999999999999999999986 788899999999875 45689999999999999999999998876 99999999888
Q ss_pred HHHHHHHHHhhhcccCC
Q psy3157 371 LFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 371 ~~li~~ll~~~~~~e~~ 387 (822)
+.++..++.++..||++
T Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 168 AGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 87777666555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=219.73 Aligned_cols=172 Identities=28% Similarity=0.443 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
+..++.........+.++.++.+++|.+..+++++.+++.++..++++++|+++||+|||+++.++.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 45666667777778888866777899999999999999999999999999999999999999999999999996666676
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALF 372 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~ 372 (822)
++.+.++++|++.|++.+. .+...+++.|++|++ .+++++...+.++|.++||.+++++.+.. +||+.|++.+++.
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFLISAILS 161 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccccccchh
Confidence 8888999999999999986 889999999999974 45699999999999999999999998776 8999999999999
Q ss_pred HHHHHHHhhhcccCCC
Q psy3157 373 VVNFVYTYWVVTDVKK 388 (822)
Q Consensus 373 li~~ll~~~~~~e~~~ 388 (822)
++..++..++++++++
T Consensus 162 ~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 162 LIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHCCC---ST
T ss_pred hhhhhhHhhhhhhccc
Confidence 8887765555555443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=216.85 Aligned_cols=170 Identities=11% Similarity=0.090 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
+..++.........|..+.+.+.++|+|..|.+++.+++.+++.++.++.|+++||+|.|+++.++.+++++.+++.+++
T Consensus 41 ~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a 120 (462)
T PRK15034 41 SCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA 120 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544444799999999999999999999999999999999999999999999999999999987
Q ss_pred -----chHHHHHHHHHHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-----
Q psy3157 296 -----KSVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVI-----HYE----- 358 (822)
Q Consensus 296 -----~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~-----~~~----- 358 (822)
++++.+++.|++.|++.+.+++....+++|+|++ ++++|+.....++|..++++++..+. ...
T Consensus 121 ~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~ 200 (462)
T PRK15034 121 VQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGV 200 (462)
T ss_pred HcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8999999999999998445888999999999964 56688886566666655544443322 211
Q ss_pred -------cchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 359 -------NGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 359 -------~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.+|+.++++.+++.++..++.+++.++
T Consensus 201 ~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 201 PQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 148888888888777776665555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=215.32 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh----HHHHHHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK----TILLTCLFTCIVSYLL 291 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr----~~l~~~~ll~~i~~ll 291 (822)
..++....+.+...|.+|.|+++ +|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34556667788999999999975 899999999999999999999999999999999984 3332222221 2223
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
...+++++.+++.|++.|++.+. .+...+++.++.++++++++....+.++|.++||++++++.+.. |||..|++.++
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~ 166 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTA 166 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHH
Confidence 34468899999999999998875 67777777887666778888888888999999999999999987 99999988776
Q ss_pred HHHHHH
Q psy3157 371 LFVVNF 376 (822)
Q Consensus 371 ~~li~~ 376 (822)
..++..
T Consensus 167 ~~~~~~ 172 (382)
T PRK11128 167 GVASML 172 (382)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=210.98 Aligned_cols=168 Identities=13% Similarity=0.167 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.++.++..++........+... .+++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++++++.+++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 455566666655444444444444 4689999999999999999999999999999999999999999999999888887
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.++.++ ++.|+++|++.+. .|...+++.|++|++ .|++|+......+|.++||.++|++.+. .|+..+++.+
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~ 160 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCA 160 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 776664 6789999999986 889999999999974 5579999999999999999999999886 4887777776
Q ss_pred HHHHHHHHHHhhhcccCC
Q psy3157 370 ALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~ 387 (822)
.+.++..+ ..+.+|+.+
T Consensus 161 ~~~~~~~~-~~~~l~~~~ 177 (393)
T PRK11195 161 LIYLLAAL-FNLFIPRLG 177 (393)
T ss_pred HHHHHHHH-HHhcCCCCc
Confidence 65544433 345566543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=214.18 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+....++...+.+...|+++.|+.+++|.+..+.|++.+++.++..++++++|+++||+|||+.++.+.+..+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 85 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF 85 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 45556777778888999999999998899999999999999999999999999999999999999987766655443322
Q ss_pred H---hh-----chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 293 G---LY-----KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 293 ~---~a-----~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
. +. ..+..+++.+++.|++.+. .+....+..+..+++.+.+|....+.++|.++||+++|.+.+. +|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--~~~~ 163 (396)
T TIGR00882 86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSI--DPQI 163 (396)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhcc--CchH
Confidence 1 11 1233455667888888775 6666677767554455567888888899999999999988664 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy3157 364 ICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~~e 385 (822)
.|++.+++.++..++.+...++
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 164 VFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 9999888877776554443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=219.03 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HH--HHHH--HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLS--NF--TIGA--IASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s--~~--~~g~--~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~ 286 (822)
...++.+++.+....+....+ ++.++++.+ .. .++. +.++.++++.++++++|+++||+|||+++.+++++++
T Consensus 20 ~~~~g~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~ 98 (490)
T PRK10642 20 AASLGNAMEWFDFGVYGFVAY-ALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMS 98 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344566666666665554444 445556432 21 1222 2577889999999999999999999999999999999
Q ss_pred HHHHHHHhhchHHH--------HHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 287 VSYLLLGLYKSVYV--------IFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 287 i~~ll~~~a~s~~~--------l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
++++++++++++.. ++++|+++|++.|. ++...++++|++|++.| ..++...+..+|.++|+.++..+.
T Consensus 99 i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 99 ISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 78899999999986 89999999999987544 577777777788888876665543
Q ss_pred h--------cccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 356 H--------YENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 356 ~--------~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
. .. |||+.|++.+++.++.. +....+||++
T Consensus 179 ~~~~~~~~~~~-gWR~~f~i~~~~~l~~~-~~~~~~~esp 216 (490)
T PRK10642 179 TIVGEANFLDW-GWRIPFFIALPLGIIGL-YLRHALEETP 216 (490)
T ss_pred HhcCHHHhcCc-cHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence 2 33 89999999776555433 3344566654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=216.53 Aligned_cols=171 Identities=21% Similarity=0.186 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
......++...+.+...|+++.|+.+++|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~ 93 (420)
T PRK09528 14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 44556777777788899999999999999999999999999999999999999999999999999987666555443321
Q ss_pred H---hhc-----hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 293 G---LYK-----SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 293 ~---~a~-----s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
. .+. .+...++++++.|.+... .+....+..+..+++++.+|....+.++|.++||++++.+.+. +|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~ 171 (420)
T PRK09528 94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQI 171 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchH
Confidence 1 111 111122233333333322 2333333333322344567888888899999999999998764 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy3157 364 ICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~~e 385 (822)
.|++.+++.++.+++.++..++
T Consensus 172 ~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 172 NFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hHHHHHHHHHHHHHHHhccccc
Confidence 9998887777666554444333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=206.19 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
..++..++.........|.+|.++++++|++..+.+++.+++.++++++++++|+++||+|||++++++.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 45556666666677778888877888899999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-hHHHHHHHHHHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccc
Q psy3157 293 GLYK-SVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHY---------ENG 360 (822)
Q Consensus 293 ~~a~-s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~---------~~g 360 (822)
++++ +++.+++.|++.|++.+..++...++++++|++ ++++++...+.++|..+++.+++.+... ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999 999999999999998766666788999999875 4457888777778888877777666542 127
Q ss_pred hHHHHH-HHHHHHHHHHHHHhhhcccCC
Q psy3157 361 FFYICC-MTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 361 w~~~f~-i~~~~~li~~ll~~~~~~e~~ 387 (822)
||+.|+ +.+++.++..++.+++.++.+
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 999994 445555555444445555543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=214.13 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQ----VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVS 288 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~ 288 (822)
+++++.+.+.+.........+.+-.+. .+.+..+.+++.+.+.++++++++++|+++||+|||+++.++.+++.++
T Consensus 20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~ 99 (502)
T TIGR00887 20 IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA 99 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 345555666666555555555432221 2455677899999999999999999999999999999999999999999
Q ss_pred HHHHHhhch------HHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhc--
Q psy3157 289 YLLLGLYKS------VYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHY-- 357 (822)
Q Consensus 289 ~ll~~~a~s------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~-- 357 (822)
.++++++++ ++.++++|++.|++.|. .+....+++|++|++.| ++++...+..+|.++|+.++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 179 (502)
T TIGR00887 100 TVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFK 179 (502)
T ss_pred HHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998888765 78899999999999996 88999999999998554 58888899999999999988766431
Q ss_pred --------------------ccchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 358 --------------------ENGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 358 --------------------~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
..+||+.|.+.++..++..+ ..+++||+|+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~ 230 (502)
T TIGR00887 180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRY 230 (502)
T ss_pred cccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHH
Confidence 12799999877766655444 35778998763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=195.11 Aligned_cols=151 Identities=32% Similarity=0.513 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccchhhHHHH
Q psy3157 241 LLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKA 320 (822)
Q Consensus 241 g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~~~~~~~ 320 (822)
+.+..-.|++.+.+.+++++.++.||.++||+|||+++++|++..++..++.+.+.|+..+++.|++.|++.|...+..+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rA 143 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRA 143 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999997777779999999999899999
Q ss_pred HHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHh---cccchHHHH--HHHHHHHHHHHHHHhhhcccCCCCcc
Q psy3157 321 YISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIH---YENGFFYIC--CMTSALFVVNFVYTYWVVTDVKKYPT 391 (822)
Q Consensus 321 ~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~---~~~gw~~~f--~i~~~~~li~~ll~~~~~~e~~~~~~ 391 (822)
+++|+++++. ++++.++..+++|.++||.+||++.. ..+.+..++ ++..++.........+++||+-+.++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 9999998754 46888999999999999999999987 222222222 22222222223344677888855443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=208.67 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFF 303 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i 303 (822)
......|.+|. +.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+.+ .+++++.+++
T Consensus 15 ~~~~~~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 15 ALTSVGPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccccCcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 33445667775 455699999999999999999999999999999999999999999998888887777 7788999999
Q ss_pred HHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHH
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYEN-GFFYICCMTSALFVV 374 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~-gw~~~f~i~~~~~li 374 (822)
.|++.|++.+. .+....++.|++|+ +++++++++.+.++|..+++.+++.+.+... +||+.|.+.+++.++
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999986 66677788898875 4667999999999999999999998887642 499998877665443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=213.06 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH-
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL- 292 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~- 292 (822)
+....+...+......+.+|. +++++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++++++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~ 109 (438)
T PRK10133 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666665 477899999999999999999999999999999999999999999999999999875
Q ss_pred --HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 293 --GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 293 --~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
.++++++.++++|+++|+|.|. .+....++.++.+++.| .+++.+..+.+|..+||.+++.+.
T Consensus 110 ~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999996 78888888888766444 478899999999999999987654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=209.82 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
+..+..........+..|. +.+++|.+..+.+++.+.+.++..++.+++|+++||+|||+++.++.++.+++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T TIGR00895 24 LIMLMDGYDLAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA 102 (398)
T ss_pred HHHHHHHHHHHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444555554 445699999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALF 372 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~ 372 (822)
++++.+++.|++.|++.+. .+...+++.|++|+ |++++++...+..+|..+||.+++.+.+.. ||++.|++.+++.
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~~~~~~~~~ 181 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAP 181 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceeehhhhhhHH
Confidence 9999999999999999986 88889999999986 456789999999999999999999999886 9999999987776
Q ss_pred HHHHHHHhhhcccCCC
Q psy3157 373 VVNFVYTYWVVTDVKK 388 (822)
Q Consensus 373 li~~ll~~~~~~e~~~ 388 (822)
++..++.++++|++++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 182 LLLLLLLMRFLPESID 197 (398)
T ss_pred HHHHHHHHHhCCCCCh
Confidence 6666665666776543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=208.68 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
....++..+......|.+|.+. +++|++..+.+++.+.+.++..++++++|+++||+|||+++.++.++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 92 (394)
T PRK11652 14 VLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF 92 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667777777655 469999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 295 YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 295 a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
+++++.+++.|++.|++.+. .+....+..|.++++ .++.++.+.+..+|..+||++++.+.+.. |||+.|++.+++
T Consensus 93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~ 171 (394)
T PRK11652 93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLL 171 (394)
T ss_pred HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHH
Confidence 99999999999999999886 667778888988754 44688888899999999999999998876 999999998877
Q ss_pred HHHHHHHHhhhcccC
Q psy3157 372 FVVNFVYTYWVVTDV 386 (822)
Q Consensus 372 ~li~~ll~~~~~~e~ 386 (822)
.++..++..++.||+
T Consensus 172 ~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 172 GAGVTFSMARWMPET 186 (394)
T ss_pred HHHHHHHHHHhCCcc
Confidence 766655555556654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=210.04 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHH-----HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAI-ASTF-----SLLQIISAPTVGYLSDLYGRKTILLTCLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~-~s~~-----~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~ 286 (822)
.+.++.+++.+....+....|. +.++++.+..+.+.+ .+.. .++..++++++|+++||+|||++++++.++++
T Consensus 19 ~~~~~~~~~~~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 97 (434)
T PRK15075 19 RVTSGNFLEMFDFFLFGFYATA-IAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 3445556666555555555554 555688877665433 2222 23334788999999999999999999999999
Q ss_pred HHHHHHHhhchHH--------HHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 287 VSYLLLGLYKSVY--------VIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 287 i~~ll~~~a~s~~--------~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
++.++++++++++ .++++|++.|++.|. .+....+++|++|++ ++++++...+.++|..+|+.+++.+.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 98 SGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 468899999999986 777889999999975 45688888888888888888877763
Q ss_pred --------hcccchHHHHHHHHH
Q psy3157 356 --------HYENGFFYICCMTSA 370 (822)
Q Consensus 356 --------~~~~gw~~~f~i~~~ 370 (822)
+.. |||++|++.++
T Consensus 178 ~~~~~~~~~~~-gWr~~f~~~~~ 199 (434)
T PRK15075 178 QWLSPAQMAEW-GWRIPFLIGCL 199 (434)
T ss_pred HhCCHHHHhcc-chHHHHHHHHH
Confidence 344 89999987543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=208.17 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++..++.....|.++.+ .+++|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 11 LAGLSMLGFLATDMYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3344555556677777887764 456999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++++++.+++.|++.|++.+. .+...+++.|+++++. +..+.......+|..+||.+++++.+.. |||+.|++.++
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~ 168 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFA 168 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Confidence 999999999999999999875 6667788999998753 4577777888899999999999999887 99999999888
Q ss_pred HHHHHHHHHh
Q psy3157 371 LFVVNFVYTY 380 (822)
Q Consensus 371 ~~li~~ll~~ 380 (822)
+.++..++.+
T Consensus 169 ~~~~~~~~~~ 178 (401)
T PRK11043 169 ITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHH
Confidence 8777665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-20 Score=204.40 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
++.....|.+|.+.+ ++|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.++
T Consensus 5 ~~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 5 LAIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred hHHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 445667788887766 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+.|++.|++.+. .+...+++.|++|++ ++++++...+..+|..++|.+++.+.+.. +|++.|++.+++.++..++.
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHH
Confidence 999999999886 788889999999875 45688999999999999999999999876 99999999888887776665
Q ss_pred hhhcccCC
Q psy3157 380 YWVVTDVK 387 (822)
Q Consensus 380 ~~~~~e~~ 387 (822)
.++.||++
T Consensus 163 ~~~~~~~~ 170 (377)
T PRK11102 163 FFFIPETL 170 (377)
T ss_pred HHhCCccC
Confidence 66666543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=209.57 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQV--------LLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTC 285 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~--------g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~ 285 (822)
..++.+.+.+....+.+..+. +++.+ +.+..+.+++.+++.++.+++++++|+++||+|||++++++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~ 95 (479)
T PRK10077 17 ATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF 95 (479)
T ss_pred HHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555553 33334 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh------------chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHH
Q psy3157 286 IVSYLLLGLY------------KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAI 350 (822)
Q Consensus 286 ~i~~ll~~~a------------~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l 350 (822)
+++.++++++ ..++.++++|+++|++.|. .+...++++|++|++ ++++++.+.+..+|.++++.+
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~ 175 (479)
T PRK10077 96 FISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175 (479)
T ss_pred HHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877753 2356788999999999996 899999999999974 456888899999999999888
Q ss_pred HHHHHh--------cccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 351 GGHVIH--------YENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 351 ~g~l~~--------~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
++.+.. .. |||+.|++.+++.++..+. .+++||+++
T Consensus 176 ~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~-~~~l~~s~~ 219 (479)
T PRK10077 176 NYFIARSGDASWLNTD-GWRYMFASEAIPALLFLML-LYFVPETPR 219 (479)
T ss_pred HHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence 776642 33 8999999888777665544 566777653
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=210.59 Aligned_cols=166 Identities=15% Similarity=0.169 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR-KTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr-r~~l~~~~ll~~i~~ll 291 (822)
-+++..+++...++...|.++.++.+++|++..++|++.+++.++.+++++++|+++||+|| |+++.++.++.+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999999999999999999999999999999965 77888888888888888
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHh--------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDI--------CV--DSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENG 360 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~--------~p--~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g 360 (822)
..+.++++.+++.|++.|++.+. .+...++...+ .. ++.|..| .+|.++||.+++.+... ..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~ 158 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LS 158 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-ch
Confidence 88889999999999999997764 44444433222 21 2345444 47888999999887332 24
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 361 FFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 361 w~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
|. .|++.+++.++..++ .+.+||.+
T Consensus 159 ~~-~f~~~~~~~~~~~~~-~~~~~e~~ 183 (418)
T TIGR00889 159 NI-QLYITAGSSALLGVF-ALTLPDIP 183 (418)
T ss_pred hH-HHHHHHHHHHHHHHH-HhcCCCCC
Confidence 55 355555555555443 45566653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=230.21 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH---HHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 245 FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLT---CLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 245 ~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~---~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
...++..+++.++++++++++|+++||+|||+++.. +.++.++..++....++++.++++|+++|++.+. .++..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888899999999999999999999999997643 2223333333333458999999999999999986 789999
Q ss_pred HHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 321 YISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 321 ~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
++.++++++ .+++|+.+++.++|.++||+++|++.... +|++.|++.+++.++. ++..+++++++
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 198 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLG-WLASLFIPKTG 198 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH-HHHHhhCCCCC
Confidence 999999874 56899999999999999999999999987 9999994444444433 33345555543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=208.19 Aligned_cols=170 Identities=13% Similarity=0.176 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHH-HHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-----GRKTI-LLTCLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-----Grr~~-l~~~~ll~~ 286 (822)
.+.+.++..........+.+|.++++ .|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++++.+..+
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 34455566666677788888888776 69999999986 3444444 6889999999999 99885 557777777
Q ss_pred HHHHHHHhh---chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy3157 287 VSYLLLGLY---KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENG 360 (822)
Q Consensus 287 i~~ll~~~a---~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~g 360 (822)
++.+++++. ++++.+.+.+++.|++.+. .++..+++.|++|+++| +.++...++.+|.++++.+++++.+...|
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 777766664 4788888899999998886 77889999999987544 58889999999999999999999883239
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 361 FFYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 361 w~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
||..|++.+++.++..+.. ++.||+
T Consensus 173 Wr~~f~i~a~l~ll~~l~~-~~~~e~ 197 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIAT-LLAPEP 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 9999999998877665543 345654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=226.84 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=117.1
Q ss_pred HHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHhh
Q psy3157 235 YLRTQVLLS--NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG---LYKSVYVIFFVRILLG 309 (822)
Q Consensus 235 ~l~~~~g~s--~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~---~a~s~~~l~i~r~l~G 309 (822)
++...++.+ ....+++.+++.++++++++++|+++||+|||++++++.++.+++.++.. .+++++.++++|++.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 114 (1146)
T PRK08633 35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLG 114 (1146)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 344445654 34578999999999999999999999999999999988876655555443 3578999999999999
Q ss_pred cccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHHHH
Q psy3157 310 LFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHY--------ENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 310 ig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~--------~~gw~~~f~i~~~~~li~~ll 378 (822)
++.+. .++..+++.|++|++ ++++|+...+..+|.++||++++++.+. ..+|++.+.+.+++.++..++
T Consensus 115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1146)
T PRK08633 115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI 194 (1146)
T ss_pred HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence 99986 788899999999864 5679999999999999999999999876 324555555444444333333
Q ss_pred HhhhcccCC
Q psy3157 379 TYWVVTDVK 387 (822)
Q Consensus 379 ~~~~~~e~~ 387 (822)
..+.+|+.+
T Consensus 195 ~~~~~~~~~ 203 (1146)
T PRK08633 195 FAYRLPKVP 203 (1146)
T ss_pred HHhcCcCCC
Confidence 344555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=198.38 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.++...++..+..+...|.+|. +++++|++..+.|++.+.+.+++.+++++.|++.||+|||++++++.++++++.+++
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~-~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQ-FQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4555666666667777788875 566799999999999999999999999999999999999999999999999998886
Q ss_pred Hh---hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Q psy3157 293 GL---YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE-------- 358 (822)
Q Consensus 293 ~~---a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~-------- 358 (822)
.. .++++.+++.|++.|+|.|. .+....++.++.|++ .|.+++.+...++|..+||.+++.+....
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 44 46899999999999999996 788888999988764 45688999999999999999998875321
Q ss_pred -----------------cchHHHHHHHHHHHHHHHHH
Q psy3157 359 -----------------NGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 359 -----------------~gw~~~f~i~~~~~li~~ll 378 (822)
.+||++|++.+++.++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26999999888877665544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=199.03 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHH--------HHHHHHHHh
Q psy3157 242 LSNFTIGAIAST-----FSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVY--------VIFFVRILL 308 (822)
Q Consensus 242 ~s~~~~g~~~s~-----~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~--------~l~i~r~l~ 308 (822)
.+..+.+.+.+. ..++..++++++|+++||+|||+++.++.++.+++.+++++++++. .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 445555554433 3334456899999999999999999999999999999999988865 478889999
Q ss_pred hcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHH
Q psy3157 309 GLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIH--------YENGFFYICCMTSALFVVNF 376 (822)
Q Consensus 309 Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~--------~~~gw~~~f~i~~~~~li~~ 376 (822)
|++.+. .+...+++.|++|++.| ..++...+..+|.++++.+++.+.. .. +||+.|++.+++.++..
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHHHHHHHHHHHHHH
Confidence 999986 78889999999987555 5888888889999999988876643 33 89999988776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=196.47 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChH-HHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-----GRKT-ILLTCLFTCIVS 288 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-----Grr~-~l~~~~ll~~i~ 288 (822)
...++......+...+.+|.|+++ .|++.+++|++..+... .+..+++|+++||+ |||+ .++++.++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345667777888899999999997 69999999999766665 58899999999999 8765 677888888777
Q ss_pred HHHHHhh---chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy3157 289 YLLLGLY---KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFF 362 (822)
Q Consensus 289 ~ll~~~a---~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~ 362 (822)
..+.++. .+++.+++..++.+++.+. .++..+++.|++|++ +++.++...+..+|.++|+.+++.+.+...|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 7777775 3577777777777777665 688899999999875 456888888999999999999999888533899
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 363 YICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 363 ~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
..|++.+++.++..+. .++.||+
T Consensus 162 ~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 162 NTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCCC
Confidence 9999988877665543 3455554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-18 Score=198.51 Aligned_cols=366 Identities=16% Similarity=0.220 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+.....+..++..+..-.++-++.+ ..-|+..++++..+..+..++.++++|.++||+.||++++.+.++.++..++.
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L 92 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLL 92 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 45566777777776666666655554 56789999999999999999999999999999999999999887776555444
Q ss_pred Hh-----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy3157 293 GL-----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYI 364 (822)
Q Consensus 293 ~~-----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~ 364 (822)
++ ..+++.+++..++.|++.+. .|...+++.+++|++ .++.++.++..+++.++||.++|.++... |-.++
T Consensus 93 ~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-G~~~~ 171 (524)
T PF05977_consen 93 AVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF-GAAAA 171 (524)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHH
Confidence 33 24788899999999999997 788899999999985 46799999999999999999999999887 88899
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy3157 365 CCMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLV 444 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 444 (822)
|.+.++..++..++...+.++.++++.. .
T Consensus 172 f~inalsfl~~i~~l~~~~~~~~~~~~~-~-------------------------------------------------- 200 (524)
T PF05977_consen 172 FLINALSFLISILALLRWKPPPPPSSLP-R-------------------------------------------------- 200 (524)
T ss_pred HHHHHHHHHHHHHHHHHccccccccccc-h--------------------------------------------------
Confidence 9988877766554432222211100000 0
Q ss_pred HHHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCc
Q psy3157 445 SCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAF 524 (822)
Q Consensus 445 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (822)
++..++
T Consensus 201 ---------------------------e~~~~~----------------------------------------------- 206 (524)
T PF05977_consen 201 ---------------------------ERFFSA----------------------------------------------- 206 (524)
T ss_pred ---------------------------hhhhhh-----------------------------------------------
Confidence 000000
Q ss_pred ccCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhh
Q psy3157 525 SLESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLF 604 (822)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 604 (822)
+++ -.++++.. +.....++..++.++....+
T Consensus 207 --------------------------l~~------------------G~ryv~~~-----~~l~~~l~~~~~~~l~~~a~ 237 (524)
T PF05977_consen 207 --------------------------LRE------------------GLRYVRSS-----PPLRSVLLRSFLFNLFASAV 237 (524)
T ss_pred --------------------------HHH------------------HHHHHhcc-----hHHHHHHHHHHHHHHhhhHH
Confidence 000 00000000 00122223333444444455
Q ss_pred hhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-ecccCccch-hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy3157 605 YSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSRNSYSS-LYYSFILLTVSILALYVSVNLYLFVLLLVSC 682 (822)
Q Consensus 605 ~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~~~~~~-l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 682 (822)
+..+|.+..+.+|.++...|++.+..|+++++|.++.+ +.++....+ +..+.++.+++++.+++.++.+...+.+.+.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 56678888888999999999999999999999999988 444433333 3556666677777777777777666555444
Q ss_pred hccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHH
Q psy3157 683 KKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIY 762 (822)
Q Consensus 683 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~ 762 (822)
+.. |. .+. ..-+ ...++...++..+++++++
T Consensus 318 G~~--------~~---------------------------~~~-------------~~~~-t~~Q~~~P~~~~GRv~si~ 348 (524)
T PF05977_consen 318 GAA--------WI---------------------------IAN-------------SSLN-TLVQLSVPDWVRGRVFSIY 348 (524)
T ss_pred HHH--------HH---------------------------HHH-------------HHHH-HHHHHhCCHHHHhHHHHHH
Confidence 421 11 000 0000 1112222333333799999
Q ss_pred HHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 763 NSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 763 ~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
+++...+..+|..++|.+.|..|.. ..++++++.++++.++
T Consensus 349 ~~~~~g~~~lGsll~G~la~~~g~~--~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLADHFGVR--TALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999998743 3466666655555555
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=192.67 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQ--VLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCIVSY 289 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~i~~ 289 (822)
.+.+..++..++.+...+.++.|+.++ +|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~ 93 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 566677888889999999999999887 89999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 290 LLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-----TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 290 ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-----~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
++.+++++++.+++++++.|+|.|. .+...+++++++|++ .++++++..+.++|.++||++++++.+.. ||++
T Consensus 94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~ 172 (475)
T TIGR00924 94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHV 172 (475)
T ss_pred HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHH
Confidence 9999998888999999999999986 788899999999752 33689999999999999999999999886 8999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3157 364 ICCMTSALFVVNFVY 378 (822)
Q Consensus 364 ~f~i~~~~~li~~ll 378 (822)
.|++.++..++..+.
T Consensus 173 ~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 173 GFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=204.73 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=130.2
Q ss_pred HHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhccc
Q psy3157 236 LRTQVLLS---NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK 312 (822)
Q Consensus 236 l~~~~g~s---~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~ 312 (822)
+.++++++ ..+.+++.+++.++.+++++++|+++||+|||++++++.++.+++.++.+++++++.++++|++.|++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 194 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence 44478998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 313 HT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 313 g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
+. .+...+++.|++|++.| +.++...++.+|.+++|.+++.+. +||+.+++.+++.++..+.. +++||+++
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~-~~~~esp~ 268 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLS-WFVPESPR 268 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH-HhcCCChH
Confidence 86 89999999999997555 577788888999999998887663 49999999988877666554 67787654
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-19 Score=193.42 Aligned_cols=175 Identities=16% Similarity=0.307 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+++...+....-+.+....+ -.++.+|++.+..|++.+.+.+.+++++|++|+++|||.||+++.+|..++.++.+.++
T Consensus 38 l~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence 33344444443344344444 46678999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
++..+|++.++|.+.|+|.+. .++++++++|.+|. |.|.+++++++..+|..+|.+.++.+......|||.|++.++
T Consensus 117 fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 117 FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAV 196 (493)
T ss_pred HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehH
Confidence 999999999999999999986 89999999999986 666799999999999999999999998876459999999999
Q ss_pred HHHHHHHHHhhhcccCCCC
Q psy3157 371 LFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 371 ~~li~~ll~~~~~~e~~~~ 389 (822)
+.+++.++..++.+|+++.
T Consensus 197 l~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 197 LGVIVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHHHHhhccCcccc
Confidence 9999999988888887754
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=198.57 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=138.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-h
Q psy3157 237 RTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-Q 315 (822)
Q Consensus 237 ~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~ 315 (822)
.++.+....+.+++.+++.++++++.+++|.|.||++-.+.+....+++++..++....+|++.+++.|++.|+++++ +
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 356788889999999999999999999999999999988888888888988888888899999999999999999986 9
Q ss_pred hHHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 316 VLCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVIH-----YENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 316 ~~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~~-----~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
|....+++.|+.+++|+ +|++....++|.++|.+++..+.+ ...||||.|++.|++.++..++.++++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 99999999999886665 899999999999999999988753 12489999999999999999998999998776
Q ss_pred Cc
Q psy3157 389 YP 390 (822)
Q Consensus 389 ~~ 390 (822)
+.
T Consensus 233 ~~ 234 (495)
T KOG2533|consen 233 KA 234 (495)
T ss_pred hc
Confidence 43
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=182.58 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~i~~ll 291 (822)
.+.+..+...++++...+.++.|+++++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++++.++
T Consensus 18 ~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~ 97 (489)
T PRK10207 18 MIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM 97 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 56667788889999999999999999999999999999999998888889999999999 99999999999999999999
Q ss_pred HHhhchHHH-HHHHHHHhhcccch-hhHHHHHHHHhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 292 LGLYKSVYV-IFFVRILLGLFKHT-QVLCKAYISDICVDS----TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 292 ~~~a~s~~~-l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~----~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
++++.+... ++++|+++|+|.|. .+...++++|++|++ .++++++..+.++|.++||.+++++.+.. |||+.|
T Consensus 98 ~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F 176 (489)
T PRK10207 98 TGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTY 176 (489)
T ss_pred HHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHH
Confidence 998876444 55789999999986 788899999999864 23688999999999999999999999987 999999
Q ss_pred HHHHHHHHH
Q psy3157 366 CMTSALFVV 374 (822)
Q Consensus 366 ~i~~~~~li 374 (822)
++.++..++
T Consensus 177 ~i~~i~~~~ 185 (489)
T PRK10207 177 NLCGAGLII 185 (489)
T ss_pred HHHHHHHHH
Confidence 986654333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=191.02 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=119.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch
Q psy3157 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT 314 (822)
Q Consensus 235 ~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~ 314 (822)
++..++|-+ ....|+.+...++..++.++.|+++|.+|||++++.+.++..++.++++.++|...++++..+.|+|.|.
T Consensus 69 ~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~ 147 (599)
T PF06609_consen 69 YINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGV 147 (599)
T ss_pred HHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHH
Confidence 555678865 5667999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhHHHHHHHHhccccchHHHH--HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhc
Q psy3157 315 QVLCKAYISDICVDSTKAFSQ--LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 315 ~~~~~~~i~e~~p~~~ra~g~--~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~ 383 (822)
.......++|..|.|.|..+. ......+...++|.++..+.... +|||.|++.+++..+.+++.+++.
T Consensus 148 ~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 148 QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHh
Confidence 555667789999988886444 33333334446777777665553 999999999998877776644443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=184.33 Aligned_cols=147 Identities=20% Similarity=0.307 Sum_probs=135.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhH
Q psy3157 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVL 317 (822)
Q Consensus 239 ~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~ 317 (822)
..+-..+++|++.+...+.+.+..++.|.+.||+|+|..+++|++++...++++++..++++++++|.++|+|.++ .+.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 3566778999999999999999999999999999999999999999999999999999999999999999999997 888
Q ss_pred HHHHHHHhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 318 CKAYISDICVD---STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 318 ~~~~i~e~~p~---~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
..++++|.+|+ |++++|+.-.+.++|..+||++||.+.+.. |.+..|.+++++.++...+.++.++.+
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 89999999986 356799999999999999999999999997 999999999999999888866665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=182.55 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChHHHHHH-HHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD----LYGRKTILLTC-LFTCIV 287 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD----r~Grr~~l~~~-~ll~~i 287 (822)
.++...+...+++....+.++.|++ .+|.+....+++..+..+..++.+|++|+++| |+|||+.++++ .+...+
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 3556666667888888899988876 49999999999999999999999999999999 59999998864 666666
Q ss_pred HHHHHHhhchHH-----------------HHHHHHHHhhcccch-hhHHHHHHHHhccccc----hHHHHHHHHHHHHHH
Q psy3157 288 SYLLLGLYKSVY-----------------VIFFVRILLGLFKHT-QVLCKAYISDICVDST----KAFSQLMMVTFLGFF 345 (822)
Q Consensus 288 ~~ll~~~a~s~~-----------------~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~----ra~g~~~~~~~iG~~ 345 (822)
+.++.+++.++. .++++..+..++... .++..++++|.+|++. ++.++.+.+.++|.+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 667777765542 222233334445554 7788999999998743 368889999999999
Q ss_pred HHHHHHHHHH--hcc------------cchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 346 IGPAIGGHVI--HYE------------NGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 346 igp~l~g~l~--~~~------------~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
+|+.++++.. ... .+.+++|++.+++.++..++..+..+|.+.
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 9999998752 111 157889999998888888888888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-18 Score=191.37 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCh-HHHHHHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRK-TILLTCLFTCIVSYLL 291 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr-~~l~~~~ll~~i~~ll 291 (822)
+.+..........++++.|+.+.+|++..++|++.++..+..++..|+.|+++|| +||| +.++++.+.++++.++
T Consensus 7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 3445556667777888888888899999999999999999999999999999998 6774 4666788888877777
Q ss_pred HHhhch------HHHHHHHHHHhhcccch-hhHHHHHHHHhcc-cc--chHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q psy3157 292 LGLYKS------VYVIFFVRILLGLFKHT-QVLCKAYISDICV-DS--TKAFSQLMMVTFLGFFIGPAIGGHVIHY---- 357 (822)
Q Consensus 292 ~~~a~s------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~---- 357 (822)
+.+.++ ...+++.+++.+++.+. .++..++..|+.+ ++ .+..++.+.+..+|..+++.+.+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 166 (437)
T TIGR00792 87 LFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG 166 (437)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 766543 45566677788887775 5666788888874 34 4457777777888887777766665532
Q ss_pred --ccchHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 358 --ENGFFYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 358 --~~gw~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
..+|++.+++.+++.++..++.++..+|.
T Consensus 167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~ 197 (437)
T TIGR00792 167 DDKFGWFMFALVLALIGVVSLIICFFGTKER 197 (437)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCEec
Confidence 13899999999988887776656666654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=167.70 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..+-.......+.|.++. +++++|+|.+..|+++++..+...+.+++..+++.|+|..+.+..++++.+++.++-...
T Consensus 20 ia~NLR~~itsvgPLL~~-Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~- 97 (395)
T COG2807 20 IAFNLRPAITSVGPLLDE-IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG- 97 (395)
T ss_pred HHhccchhhhhhhhhHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-
Confidence 333344556667788775 666799999999999999999999999999999999999999999999999999988777
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVV 374 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li 374 (822)
+.+.++.+..+.|.|.+. ....++++-+.||+| ...+|+|....++|.++++.+.-.+.+...|||....+.+.+.++
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all 177 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL 177 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence 888899999999999996 888899999999987 567999999999999999999988888766899999998888887
Q ss_pred HHHH
Q psy3157 375 NFVY 378 (822)
Q Consensus 375 ~~ll 378 (822)
.+++
T Consensus 178 Al~~ 181 (395)
T COG2807 178 ALLI 181 (395)
T ss_pred HHHH
Confidence 7765
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-17 Score=171.23 Aligned_cols=173 Identities=14% Similarity=0.074 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
...+....+.+-... ...+..-+...+|.+..+..++....+.++.+++..||.++|++|||+.+.+..+..++..++.
T Consensus 82 ~ag~gwmad~m~~m~-~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is 160 (528)
T KOG0253|consen 82 VAGMGWMADAMEMML-LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS 160 (528)
T ss_pred HhhhHHHHHHHHHHH-HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh
Confidence 444455544443333 3333334666789999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccchhhHHHHHHHHhccccchH-HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTKA-FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~~ra-~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
++++|+..+++.|.+.|+|.|+.|...++-.|..|..+|. ..+....+.+|.++...++..++.++ ||||.....+..
T Consensus 161 ~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~-gwr~~l~~~~~p 239 (528)
T KOG0253|consen 161 GASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTP 239 (528)
T ss_pred cCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhH
Confidence 9999999999999999999998899999999999976664 44445889999999999999999998 999998887765
Q ss_pred HHHHHHHHhhhcccCCC
Q psy3157 372 FVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 372 ~li~~ll~~~~~~e~~~ 388 (822)
..+.+++ .+++||+++
T Consensus 240 l~~~a~f-~~w~~ESpR 255 (528)
T KOG0253|consen 240 LMFAARF-LVWVYESPR 255 (528)
T ss_pred HHHHHHH-HhhcccCcc
Confidence 5555444 567788776
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-15 Score=173.83 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh------chHHHHHH
Q psy3157 230 PLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY------KSVYVIFF 303 (822)
Q Consensus 230 ~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a------~s~~~l~i 303 (822)
..+...+++++|++..+++++.++. ....+++++.|+++||+|+|++++++.++++++.++++++ .+++.+++
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 3444457778999999999998774 4455678889999999999999999999999999999987 68999999
Q ss_pred HHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFI-GPAIGGHVIHYENGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~i-gp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~ 380 (822)
.|++.|+|.+. .+.....+.+|+|+ |+++.|+...+.++|.++ +++..+++ .. +|++.|++.+++.++..++.+
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-~~--~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFF-SD--NTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 77788888999985 677899999999999875 55555544 32 788899999988888877777
Q ss_pred hhcccCC
Q psy3157 381 WVVTDVK 387 (822)
Q Consensus 381 ~~~~e~~ 387 (822)
++++.++
T Consensus 203 ~~vr~p~ 209 (591)
T PTZ00207 203 VFMRLPP 209 (591)
T ss_pred hheeCCc
Confidence 7666543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=177.36 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHHHHHH-HHHhhhCChHHHHHHHHHH-HHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAI--ASTFSLLQIISAPTVG-YLSDLYGRKTILLTCLFTC-IVS 288 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~--~s~~~l~~~ig~~~~G-~LsDr~Grr~~l~~~~ll~-~i~ 288 (822)
.+...++......+...|.+|.++++ .|.+..++|++ .++..+...+.+|+++ +.+||+|||+.+++.+.+. ++.
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 45566777788889999999998886 79999999997 4667888888888884 4799999999876554332 212
Q ss_pred HHHHH-h--hch-HHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 289 YLLLG-L--YKS-VYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 289 ~ll~~-~--a~s-~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
..... + ..+ ...++...++.+++.+. -+...++..|..+++.+ ..+....+..+|.++|+.+.+++.+.. ||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-gw 162 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-GQ 162 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CH
Confidence 22222 1 222 22333333334444443 44555666676665544 355566677888888888888888887 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy3157 362 FYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~~~ 382 (822)
|..|++.+++.++..+..++.
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999998887766664443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-15 Score=173.72 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~i~~ll 291 (822)
.+.+..++..++.+...++++.|+++++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.++
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l 104 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 55667788888888888999999998999999999988888776666667899999999 59999999999999999888
Q ss_pred HHhhc-hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-c---hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 292 LGLYK-SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-T---KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 292 ~~~a~-s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-~---ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
+++++ +.+.+++++++.|+|.|. .+...+++++++|++ . +++++++.+.++|.++||+++|++.+.. |||+.|
T Consensus 105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F 183 (500)
T PRK09584 105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAF 183 (500)
T ss_pred HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 88874 566677889999999986 677789999999752 2 2578889999999999999999999987 999999
Q ss_pred HHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFV 377 (822)
Q Consensus 366 ~i~~~~~li~~l 377 (822)
++.++..++..+
T Consensus 184 ~i~~i~~~i~~i 195 (500)
T PRK09584 184 ALSVVGMLITVV 195 (500)
T ss_pred HHHHHHHHHHHH
Confidence 998765555443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=171.04 Aligned_cols=164 Identities=19% Similarity=0.166 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
++...++..+.....-+.+| .+++.++++..+.+++..+++.++.+++++.|++.+|+|+|..+++|+.++++++.++.
T Consensus 18 ~t~lFfl~G~~~~l~diLip-~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIP-HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHhhcchhhHH-HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555556666 47778999999999999999999999999999999999999999999999999999985
Q ss_pred ---hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Q psy3157 294 ---LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHY---------- 357 (822)
Q Consensus 294 ---~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~---------- 357 (822)
...++..++++.++.|.|.|. .+.+..+++.+.++ +.+-+++.+...++|.++||++++.++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 456888899999999999997 88899999999987 45568999999999999999999988773
Q ss_pred --------ccchHHHHHHHHHHHHHHHHH
Q psy3157 358 --------ENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 358 --------~~gw~~~f~i~~~~~li~~ll 378 (822)
...|++.|...+.+.++..+.
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 123666676666655544443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=175.41 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHHH-HHHHHHHHHHHHHHHhh---c
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-----GRKTIL-LTCLFTCIVSYLLLGLY---K 296 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-----Grr~~l-~~~~ll~~i~~ll~~~a---~ 296 (822)
+...+.+|.+++ ++|+|.+++|++... .+...+ .+++|+++||+ |||+.+ +.+.++.++..++.++. .
T Consensus 5 ~~~~~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 5 GLVGNTLPYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred hhHHhHHHHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 345566666665 589999999999655 555554 89999999998 898874 56777777776676676 4
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------hHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG--------FFYIC 365 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g--------w~~~f 365 (822)
+++.+.+..++.+++.+. .++..+++.|++|++ +++.++...+..+|.++++.+++.+.+.. | ||+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~wr~~f 160 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITLWGYIF 160 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccHHHH
Confidence 566666677777777665 688899999999865 45688889999999999999999998776 6 99999
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q psy3157 366 CMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~~~e 385 (822)
++.+++.++..+..++..||
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99888777765554444555
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=175.53 Aligned_cols=173 Identities=23% Similarity=0.364 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-RKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G-rr~~l~~~~ll~~i~~ll 291 (822)
-++..+++..+..+...|+++.|+++ .|+|..|+|.+.++..+..+++++++|.++||++ +|+++.+..++.++..+.
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556777778888899999999987 7999999999999999999999999999999986 567777777777777777
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HHHHHhcc--cchHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAI-GGHVIHYE--NGFFYICCM 367 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l-~g~l~~~~--~gw~~~f~i 367 (822)
....++++.+++..++..++..+ .|...++..+...++.+-+|-...+.++|.+++... ++.+.... .+..+.+++
T Consensus 85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i 164 (400)
T PF03825_consen 85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI 164 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 77788888888888777777664 777777777777655555677777777887777544 23333222 122345555
Q ss_pred HHHHHHHHHHHHhhhcccCC
Q psy3157 368 TSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 368 ~~~~~li~~ll~~~~~~e~~ 387 (822)
.+++.++.... .+.+|+.+
T Consensus 165 ~~~~~~ll~~~-~l~lp~~~ 183 (400)
T PF03825_consen 165 AAILSLLLAGF-ALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHH-HHhCCCCc
Confidence 55544333322 34456554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=167.35 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFT-IGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRI 306 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~-~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~ 306 (822)
..|+...++.+++|++..+ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++..++.++++++..+.+.|+
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777789999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH--HHHHHHHHHHhh
Q psy3157 307 LLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS--ALFVVNFVYTYW 381 (822)
Q Consensus 307 l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~--~~~li~~ll~~~ 381 (822)
+.|++.|+ + +...++..|+|+ |+|+.|+++.+..+|.++++++++++. .+ |||+.+...- ....+.++++.+
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~-gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL-GWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 6 899999999997 456799999999999999999999944 44 8987654332 222233334456
Q ss_pred hcccCC
Q psy3157 382 VVTDVK 387 (822)
Q Consensus 382 ~~~e~~ 387 (822)
++|..+
T Consensus 201 ~LP~~~ 206 (511)
T TIGR00806 201 FLKRPK 206 (511)
T ss_pred hCCCCc
Confidence 777433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=171.76 Aligned_cols=141 Identities=21% Similarity=0.347 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHhhcccch-hhHHHHHH
Q psy3157 247 IGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL---YKSVYVIFFVRILLGLFKHT-QVLCKAYI 322 (822)
Q Consensus 247 ~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~---a~s~~~l~i~r~l~Gig~g~-~~~~~~~i 322 (822)
.+.+++++.+|.++|+.+.|+++||+|||..+.++.++..++.+++.+ .+++.+++++|++.|+..|. ....+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456788899999999999999999999999999988888877777766 46889999999999999996 88889999
Q ss_pred HHhccccchH--HHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 323 SDICVDSTKA--FSQLMMVTFLGFFIGPAIGG-HVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 323 ~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g-~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
.|..|.+-|+ ..+..++..+|.++|..++. .+......|++.+.+..++.++.+++ ..++||+|+
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk 209 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPK 209 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence 9999987774 44456667777777755543 23333347999998888877766555 677899886
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=171.21 Aligned_cols=369 Identities=18% Similarity=0.226 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH--HHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCL--FTCIVSYL 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~--ll~~i~~l 290 (822)
..+...+...+.++...|+++.++++..|++.+++|.+.++..+...+.+|+.|.++||+|.|+-++..+ ++...+.+
T Consensus 11 ~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pf 90 (412)
T PF01306_consen 11 WLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPF 90 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 4556677777889999999999999888999999999999999999999999999999999665444332 22111222
Q ss_pred HH-Hhh----chHH-HHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 291 LL-GLY----KSVY-VIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 291 l~-~~a----~s~~-~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
.. .+. .|.+ ..+++.+..|++..+ .++.-+++.++....+--+|-..++.++|.+++..++|.+.+. +-..
T Consensus 91 f~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~ 168 (412)
T PF01306_consen 91 FIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNI 168 (412)
T ss_dssp HHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccH
Confidence 21 121 2322 222333333443332 4554555544433333348888999999999999999999876 4567
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHH
Q psy3157 364 ICCMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGL 443 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 443 (822)
.||+..+..++..++.++..|+.+++.......
T Consensus 169 ~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------------------------------------- 201 (412)
T PF01306_consen 169 IFWIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------------------------------------- 201 (412)
T ss_dssp HHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-----------------------------------------------
Confidence 888766665555544344433322211110000
Q ss_pred HHHHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCC
Q psy3157 444 VSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPA 523 (822)
Q Consensus 444 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (822)
..++++.
T Consensus 202 -------------------------------------------------------------~~~~~~~------------ 208 (412)
T PF01306_consen 202 -------------------------------------------------------------GAKKDKV------------ 208 (412)
T ss_dssp -------------------------------------------------------------SS-----------------
T ss_pred -------------------------------------------------------------ccCCCCC------------
Confidence 0000000
Q ss_pred cccCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHh
Q psy3157 524 FSLESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSL 603 (822)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 603 (822)
+ .+... ..+..+.+|.+.++..........
T Consensus 209 ------------------------------------------~-----~~~~~---~l~k~~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 209 ------------------------------------------S-----LKDVL---SLFKMRNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp ------------------------------------------------HHHHH---HHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------c-----HHHHH---HHhcchhHHHHHHHHHHHHHHHHH
Confidence 0 00000 011123457776666666667777
Q ss_pred hhhhhHHhhhccc---CCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy3157 604 FYSNYISVLTHNF---HANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLL 678 (822)
Q Consensus 604 ~~~~~~~~l~~~~---g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 678 (822)
+...++.|.+..+ +.+.+..|++.++.-+..++...+.. +.+.+.++.+..+.+++++=.+..++.++.+...+.
T Consensus 239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~ 318 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLI 318 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 7767888877654 45556688888888888888888888 555588888888888888887787877777655544
Q ss_pred HHhhh-ccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccch
Q psy3157 679 LVSCK-KFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSN 757 (822)
Q Consensus 679 ~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 757 (822)
-.+-+ .+. .. .++.+-++.+....+...+
T Consensus 319 klLH~~e~~------l~--------------------------------------------lva~fkYI~~~fd~rlsAt 348 (412)
T PF01306_consen 319 KLLHALEFP------LL--------------------------------------------LVAAFKYITAHFDKRLSAT 348 (412)
T ss_dssp HHHHHHHHH------HH--------------------------------------------HHHHHHHHHHHS-GGGHHH
T ss_pred HHHHHHHHH------HH--------------------------------------------HHHHHHHHHHhCCHhHHHH
Confidence 33211 100 00 0111112222222233235
Q ss_pred hhhHH-HHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 758 ISGIY-NSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 758 ~~Gi~-~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
.+.+. ++..++|.++.++++|+++|..| +...|++.+++.++..++
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G--~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIG--FQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcC--cHHHHHHHHHHHHHHHHH
Confidence 77774 67789999999999999999987 333343333333333333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=185.68 Aligned_cols=162 Identities=13% Similarity=0.192 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc-------
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK------- 296 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~------- 296 (822)
..++..+.++. ++++|+++..+.|++.+.+.++++++.++.|++.||+|||+.+.++.++++++.+++++++
T Consensus 48 ~~g~~~~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 48 YNGLVNSSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HHHHHHhhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 34455555554 5667999999999999999999999999999999999999999999999999999987753
Q ss_pred --------------------------------------------hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch
Q psy3157 297 --------------------------------------------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK 331 (822)
Q Consensus 297 --------------------------------------------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r 331 (822)
.+..++++|+++|+|.+. ++...+++.|++|++.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~ 206 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS 206 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence 245677899999999986 88899999999997554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 332 --AFSQLMMVTFLGFFIGPAIGGHVIHYE---------------------NGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 332 --a~g~~~~~~~iG~~igp~l~g~l~~~~---------------------~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
.+|++..+..+|.++|+++++++.+.+ ++|+..|++.+++.++.+++ ++++|+..
T Consensus 207 ~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~l 284 (633)
T TIGR00805 207 PLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKAL 284 (633)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCcccc
Confidence 589999999999999999999988643 13777788888887776655 44555543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-13 Score=153.74 Aligned_cols=165 Identities=12% Similarity=0.162 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~~i~~ll 291 (822)
.+++..+...++.+....+++.|+.+.+|++..+.+.+.+.+.+...++++++|+++||+ |||++++++.++.+++.++
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll 92 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV 92 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence 455566777788888888999999988999999999999999999999999999999999 9999999999999988877
Q ss_pred HHhhc-hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--ch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 292 LGLYK-SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 292 ~~~a~-s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
.+... +...++++..+.++|.|. .+...++++|.+|++ .| ++++...+.++|..++|.+++++.+.. ||++.|
T Consensus 93 l~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F 171 (493)
T PRK15462 93 LGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGF 171 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHH
Confidence 66543 223344444455556664 566678999999853 34 689999999999999999999999887 999999
Q ss_pred HHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVY 378 (822)
Q Consensus 366 ~i~~~~~li~~ll 378 (822)
.+.++..++.++.
T Consensus 172 ~iaaigm~l~li~ 184 (493)
T PRK15462 172 GLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 9877655444433
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=160.26 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVL-------LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTC 285 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-------~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~ 285 (822)
+..++.+.|.+....+....+.+-.-.+| .+....+.+..+..+|.++||+++|++.|++|||+++...+++.
T Consensus 45 iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liIm 124 (538)
T KOG0252|consen 45 IAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIM 124 (538)
T ss_pred HhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHH
Confidence 45566777776666655555543332233 45667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-------hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 286 IVSYLLLGLYK-------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 286 ~i~~ll~~~a~-------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
.++++++++.. -+++++..|+++|+|.|+ +|...++.+|...++.|+ .+......+.|...|.+++-.+.
T Consensus 125 Ii~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 125 IICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS 204 (538)
T ss_pred HHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence 99999877742 257788899999999999 999999999999876664 34433344444444444433332
Q ss_pred ----hcc----------cchHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q psy3157 356 ----HYE----------NGFFYICCMTSALFVVNFVYTYWVVTDVKKYP 390 (822)
Q Consensus 356 ----~~~----------~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~ 390 (822)
... .=||..+.+.++..++.+. ..+.+||+++-+
T Consensus 205 ~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 205 AIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYT 252 (538)
T ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHH
Confidence 211 1388888776666554433 366678776543
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=163.10 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHH
Q psy3157 245 FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYIS 323 (822)
Q Consensus 245 ~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~ 323 (822)
.+.+|+.+...++..++++++|+++|++|||++++++.+++.++.+++++++|+++++++|++.|+|.|. ..+.+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 3558999999999999999999999999999999999999999999999999999999999999999996 788899999
Q ss_pred HhccccchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 324 DICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 324 e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
|+.|++.|+ .+..+....+|..+|..++....+...+||..+.+..+.+++..+. .+++||+|+.
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 999987664 6778888888888885555444332028999998888888887777 7888887754
|
|
| >PF10185 Mesd: Chaperone for wingless signalling and trafficking of LDL receptor; InterPro: IPR019330 Mesoderm development candidate 2 (also known as LDLR chaperone MESD)represents a set of highly conserved proteins found from nematodes to humans | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=143.27 Aligned_cols=110 Identities=61% Similarity=1.015 Sum_probs=100.7
Q ss_pred cccccccccccCCCChhHHHhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCC
Q psy3157 54 KKLSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGS 133 (822)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (822)
|+-.++|++++|++||+++++++|||+++|+||.+.++|++++.+.++..||.++.|||.+..+|.++++|++|++++|+
T Consensus 37 r~~p~~D~skld~~~pe~~lk~sKKGktlm~FV~~~~~ps~~e~e~i~~~Wq~~L~N~hi~v~ry~Id~~r~if~~~dG~ 116 (158)
T PF10185_consen 37 RPPPPIDLSKLDPSDPESLLKMSKKGKTLMMFVKVSGDPSREETEEITKLWQTSLRNNHIEVQRYPIDDNRAIFMFKDGS 116 (158)
T ss_dssp -S-SSTHCCHCSTSS-HHHHHHH-SSSEEEEEEEESSSTTHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEESSCC
T ss_pred CCCCCCChhhcCccCHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCeeEEEEEEcCCEEEEEecChH
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccCCCCch
Q psy3157 134 QAWDAKDYLVQQERCKSVTIENKVYPGKLT 163 (822)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (822)
++++.++.+.+++++.+++.+...+++...
T Consensus 117 ~a~E~k~FL~~Q~e~~evtie~q~y~g~~~ 146 (158)
T PF10185_consen 117 QAWEAKDFLLQQDECYEVTIEGQVYPGPGK 146 (158)
T ss_dssp CHHHHHHHHHTSTTEEEEEECCCCECSSSH
T ss_pred HHHHHHHHHhcCcceeEEEECCEEecCCCc
Confidence 999999999999999999999999877763
|
It is a chaperone that specifically assists with the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). It also acts as a modulator of the Wnt pathway, since some LDLRs are coreceptors for the canonical Wnt pathway and is essential for specification of embryonic polarity and mesoderm induction []. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs) []. The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation) []. ; PDB: 2RQM_A 2I9S_A 3OFH_A 2KGL_A 2RQK_A 2KMI_A 3OFG_A 3OFE_B 3OFF_A. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-18 Score=192.72 Aligned_cols=144 Identities=21% Similarity=0.366 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 245 FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK---SVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 245 ~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~---s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
.+.+++.+...+|..+|++++|+++||+|||++++++.++..++.++.++++ +++.++++|++.|++.|. .+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4578999999999999999999999999999999999999999999999999 999999999999999996 889999
Q ss_pred HHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 321 YISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE--NGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 321 ~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~--~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
++.|..|++.| ..++.+.++.+|..++..++..+.... .+||+.+++.+++.++..+. .+++||+|+.
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~w 197 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRW 197 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccce
Confidence 99999998666 467777788888888877766553332 15999999888887665444 5778998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-14 Score=159.67 Aligned_cols=168 Identities=20% Similarity=0.287 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChHHHH-HHHHHHHHHHHHH
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD----LYGRKTILL-TCLFTCIVSYLLL 292 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD----r~Grr~~l~-~~~ll~~i~~ll~ 292 (822)
.+...........++..|+.+.+|+++..+|.+..+..+..++..|+.|.++| |+|||+.++ +|.+..+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh
Confidence 34444445555566777888889999999999999999999999999999999 899766555 6777888777777
Q ss_pred Hhh-c-------hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cch--HHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q psy3157 293 GLY-K-------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STK--AFSQLMMVTFLGFFIGPAIGGHVIHYEN- 359 (822)
Q Consensus 293 ~~a-~-------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~- 359 (822)
... + ....+++..++..++... ..+..++..|+.+. ++| ..+.-..+..+|.++...+.+.+.+..+
T Consensus 90 f~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~ 169 (428)
T PF13347_consen 90 FSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG 169 (428)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 655 3 223345566666777765 67778899999873 444 4666667777777766666666664432
Q ss_pred -----chHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 360 -----GFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 360 -----gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
+|++..++.+++.++..++..+..+|
T Consensus 170 ~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 170 GDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred CccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 69999999999888888777777776
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=156.92 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCh-HHHHHHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRK-TILLTCLFTCIVSYLL 291 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr-~~l~~~~ll~~i~~ll 291 (822)
+.+...........+++.|+.+.+|++...+|.+.++..+..++..|+.|+++|| +||| +.++++.+..+++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 3334444455556777788888999999999999999999999999999999998 7774 5555676777666655
Q ss_pred HHhhch------HHHHHHHHHHhhcccch-hhHHHHHHHHhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q psy3157 292 LGLYKS------VYVIFFVRILLGLFKHT-QVLCKAYISDICV-DSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE--- 358 (822)
Q Consensus 292 ~~~a~s------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~--- 358 (822)
....++ ++.+++..++.+++... ..+..++.+|+.+ +++| ..++...+..+|..+++.++..+....
T Consensus 97 ~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~ 176 (444)
T PRK09669 97 TFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG 176 (444)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544432 44555555666665544 5566788999885 3444 456666666777777766554443321
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 359 ---NGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 359 ---~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.+|+..+.+.+++.++..++.++..+|
T Consensus 177 ~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 177 DEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 278888888887776666554444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-14 Score=159.99 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----ChHHHHHHHHHHH-H
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-----RKTILLTCLFTCI-V 287 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G-----rr~~l~~~~ll~~-i 287 (822)
+...++..+.. +.....++.++++++|++.++++.+.+...++..+-.+ ||+++||++ ||+.++++.++.+ +
T Consensus 31 ~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~ 108 (468)
T TIGR00788 31 GLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAI 108 (468)
T ss_pred HHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 33445555555 66666677788888999999999999999999988554 999999998 7787777776663 4
Q ss_pred HHHHHHhhchHHHHH-HHHHHhhcccch-hhHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 288 SYLLLGLYKSVYVIF-FVRILLGLFKHT-QVLCKAYISDICVDSTKA----FSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 288 ~~ll~~~a~s~~~l~-i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra----~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
.....+..++..... +..++.+++.+. -.+.-+++.|..+++.+. .++.....++|.++|+.++|.+.+.. +|
T Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-~~ 187 (468)
T TIGR00788 109 LYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-LT 187 (468)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 333333334544444 477888888876 678889999988743222 22333345689999999999999887 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 362 FYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
+..|++.+++.++..+ ..++++|+
T Consensus 188 ~~~f~~~a~l~ll~~~-~~~~~~E~ 211 (468)
T TIGR00788 188 RILFLITAALLLLQLF-VSNLSKER 211 (468)
T ss_pred chHHHHHHHHHHHHHH-HHHhcccc
Confidence 9999999888877733 34556664
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-12 Score=146.80 Aligned_cols=356 Identities=15% Similarity=0.163 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHHHhh-c-hHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 245 FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-TCLFTCIVSYLLLGLY-K-SVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 245 ~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-~~~ll~~i~~ll~~~a-~-s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
+..++..++..+..++..|+.|.++|+-|+|+.++ +..++..+++++..+. + +++...+..++.-++.+. .....+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999766655 4455555566666553 3 344444444444455554 666788
Q ss_pred HHHHhcccc----------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHH
Q psy3157 321 YISDICVDS----------------------------TKAFSQLMMVTFLGFFIGPAIGGHVIHYE-------NGFFYIC 365 (822)
Q Consensus 321 ~i~e~~p~~----------------------------~ra~g~~~~~~~iG~~igp~l~g~l~~~~-------~gw~~~f 365 (822)
++.|+.+++ .|..+.-.....+|+++.-++.-.+.... ...|.++
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 999988653 34455555555666666655554443222 1358888
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVS 445 (822)
Q Consensus 366 ~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 445 (822)
.+.++..++..+..++++|+.++.+..+.... ..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~----------~~------------------------------------ 263 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS----------YL------------------------------------ 263 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh----------HH------------------------------------
Confidence 88888888777777777777654211110000 00
Q ss_pred HHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCcc
Q psy3157 446 CKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAFS 525 (822)
Q Consensus 446 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (822)
....
T Consensus 264 ----------------------~~g~------------------------------------------------------ 267 (477)
T PF11700_consen 264 ----------------------RFGF------------------------------------------------------ 267 (477)
T ss_pred ----------------------HHHH------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhhh
Q psy3157 526 LESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFY 605 (822)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 605 (822)
.++.+.+++... .+....+++..++..-+...+.
T Consensus 268 --------------------------------------------~~l~~t~k~~~~--~~~~~~fLia~~l~~dg~~ti~ 301 (477)
T PF11700_consen 268 --------------------------------------------KRLWRTFKEIRK--LRQLFLFLIAYFLYSDGVNTII 301 (477)
T ss_pred --------------------------------------------HHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111 1223556666777777888888
Q ss_pred hhhHHhhhcccCCCccceeeEEehhhhhccccceeee-eccc-Ccc--chhHHHHHHHH-HHHHHHH-h------hhHHH
Q psy3157 606 SNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSR-NSY--SSLYYSFILLT-VSILALY-V------SVNLY 673 (822)
Q Consensus 606 ~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~-~~~--~~l~~~~~l~~-~~~~~l~-~------~~~~~ 673 (822)
.....|.++.+|++..+...+..+..+.+++|.++.| ++++ +.+ +.+....++.. +.+..+. + ..+.+
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~ 381 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW 381 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH
Confidence 8888999999999999987777778888999999989 5555 444 33333333332 2222111 0 23334
Q ss_pred HHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCcc
Q psy3157 674 LFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDV 753 (822)
Q Consensus 674 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 753 (822)
.+.++.++.+.+.++ .++ .+ ..+..+-.+..+
T Consensus 382 ~f~~~a~~~G~~~G~----~qs---------------------------~s-----------------Rs~~~~LiP~g~ 413 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGG----IQS---------------------------AS-----------------RSLFSRLIPPGR 413 (477)
T ss_pred HHHHHHHHHHHHhhh----HHH---------------------------HH-----------------HHHHHHhCCCch
Confidence 444444444333212 111 11 111111112222
Q ss_pred ccchhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhheehhhhhhHHHHhh
Q psy3157 754 FGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTRVVMMKSRRIQREM 820 (822)
Q Consensus 754 ~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 820 (822)
. +..+|+++...-..+++||.+.|.+.|.+| +..+.|+...++.++|+++ +...+..|.++++
T Consensus 414 e-~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~l--l~~v~~~~g~~~A 476 (477)
T PF11700_consen 414 E-AEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLIL--LFFVDVEKGREDA 476 (477)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHH--Hhhccchhhhhcc
Confidence 2 369999999999999999999999999997 5666677777777888777 3444434444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=161.47 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=128.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hh
Q psy3157 238 TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QV 316 (822)
Q Consensus 238 ~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~ 316 (822)
+.++.+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++ ..
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34667888889999999999999999999999999999999999999999999999999999999999999999976 88
Q ss_pred HHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy3157 317 LCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 317 ~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~ 389 (822)
....+++|+++++.|. ..+ ......++.++|++++++.. +||+.+++..++.++.+++ +++.||+++.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw 260 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL-WFLPPESPRW 260 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence 9999999999987775 444 56677788888888888876 7999999999988877666 5555677654
|
|
| >KOG4357|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-14 Score=126.19 Aligned_cols=109 Identities=48% Similarity=0.883 Sum_probs=96.1
Q ss_pred cccccccccccCCC--ChhHHHhhhhcCceEEEEEeeCC--CCChhh----HHHHHHHHhhhhcccccccccccccCcce
Q psy3157 54 KKLSDLRLKFKDNP--DPESLLKLSKKGRTLMVFVSVDG--DPTRDE----AESITKLWQTSLFNSHIQAERYMVEDSRA 125 (822)
Q Consensus 54 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (822)
|+.-++|+++.|.. |||+++|+||||+|+|.||.+.+ .|++.+ ++.+|..||+++.|+|-+.+++...++|+
T Consensus 37 r~~~~ld~eki~~kakdpedil~mskkgktlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~ddra 116 (164)
T KOG4357|consen 37 RKPAPLDFEKIDAKAKDPEDILKMSKKGKTLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIIDDDRA 116 (164)
T ss_pred CCCCCCChhhcCcccCChHHHHHHhhcCceEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEecCCeE
Confidence 44567888887764 69999999999999999996665 555555 48999999999999999999999999999
Q ss_pred eEeecCCCCcccccccccccccccccccccccCCCCc
Q psy3157 126 IFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKL 162 (822)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (822)
+||+++|+++++.++.+..++.+..++.+.+..++..
T Consensus 117 ifm~kdge~a~e~k~fll~qd~~advtiegq~f~g~g 153 (164)
T KOG4357|consen 117 IFMFKDGEQAFEAKDFLLGQDFCADVTIEGQSFDGKG 153 (164)
T ss_pred EEEEeChhHHHHHHHHhhccchheeeeecceeccCCC
Confidence 9999999999999999999999999999988877653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=151.95 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCC-hHHHHHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD----LYGR-KTILLTCLFTCIVSYL 290 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD----r~Gr-r~~l~~~~ll~~i~~l 290 (822)
++.+........+.++++.|+.+.+|++...+|.+..+.-+..++..|++|+++| |+|| |+.++++.+..+++.+
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 3455566677778888889999999999999999999999999999999999999 5698 5566677777777765
Q ss_pred HHHhhch------HHHHHHHHHHhhcccch-hhHHHHHHHHhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc--
Q psy3157 291 LLGLYKS------VYVIFFVRILLGLFKHT-QVLCKAYISDICV-DSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-- 358 (822)
Q Consensus 291 l~~~a~s------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-- 358 (822)
+....++ +..+++..++.+++... ..+..++..|+.+ +++| ..++-..+.++|..+++.++..+....
T Consensus 93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 172 (473)
T PRK10429 93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG 172 (473)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5544321 33444455566666654 5677788899884 4555 356656666777666655544433221
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 359 ----NGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 359 ----~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.+|+....+.+++.++..++.++..+|
T Consensus 173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e 203 (473)
T PRK10429 173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHE 203 (473)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 257777777777766655554544454
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=152.59 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----CChHHH-HHHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY----GRKTIL-LTCLFTCIVSYLL 291 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~----Grr~~l-~~~~ll~~i~~ll 291 (822)
+.+..........++++.|+++.+|++..++|.+.++..+..++..+++|+++||. |||+.+ .++.+...+..++
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 44455666667778888899998999999999999999999999999999999996 766654 4555544443333
Q ss_pred H-Hhh----c--hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchH--HHHHHH-----HHHHHHHHHHHHHHH
Q psy3157 292 L-GLY----K--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKA--FSQLMM-----VTFLGFFIGPAIGGH 353 (822)
Q Consensus 292 ~-~~a----~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra--~g~~~~-----~~~iG~~igp~l~g~ 353 (822)
. ... . ..+.+++..++.+++.+. .++..++..++... ++|. .++-.. +..+|..++|.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 211 1 223334445566766665 55666666766643 3342 333222 233455666666654
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=152.20 Aligned_cols=178 Identities=22% Similarity=0.280 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRT-QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR-KTILLTCLFTCIVSYL 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr-r~~l~~~~ll~~i~~l 290 (822)
++.+..++.....+++.+..-.|+++ +.+.+.+..||+.++..++.+++++.+|+++.|.+. |+.++++.++..++.+
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 67777788777788777777778876 467788889999999999999999999999999995 7778899999999999
Q ss_pred HH-Hh---hc-hHHHHHHHHHHhhcccchhhHHHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Q psy3157 291 LL-GL---YK-SVYVIFFVRILLGLFKHTQVLCKAYISDIC--VDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYE----- 358 (822)
Q Consensus 291 l~-~~---a~-s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~--p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~----- 358 (822)
+. .+ .+ ..+.++++|++.|+|.|.....-+|+++.. +.|.|+++....+..+|.++||.++..+....
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~ 197 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFM 197 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceE
Confidence 88 33 33 678899999999999998888899999954 45788888877777888888888876665421
Q ss_pred -------cchHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q psy3157 359 -------NGFFYICCMTSALFVVNFVYTYWVVTDVKKYP 390 (822)
Q Consensus 359 -------~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~ 390 (822)
+-+...-|+.+++.++.+++..++++|..++.
T Consensus 198 i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 198 ILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred EcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 12345667777777777777777787766544
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-13 Score=139.85 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHH
Q psy3157 231 LVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCIVSYLLLGL---YKSVYVIFFVRI 306 (822)
Q Consensus 231 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~i~~ll~~~---a~s~~~l~i~r~ 306 (822)
.+..+++.+.+++.++..++.+.+.....+.+.++|++.|| +|-|...++-+....++.++++. .+.+|.+.++|+
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF 144 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF 144 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence 34556666677788888899999999999999999999997 68777666555556666666544 678999999999
Q ss_pred Hhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 307 LLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 307 l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+.|+|.-. ......+..-||.-+ .-++|+......+|..+--.+.+++.+..
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 99999854 566678888888754 34689988888888887777777776653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=133.78 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChHHHH-HHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRKTILL-TCLFTCIVSYLL 291 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr~~l~-~~~ll~~i~~ll 291 (822)
+.+........+..++..|+.+..|+++..+|.+..+.-+--++.-|+.|+++|| +|||+.++ ++.+..+++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 4444455556666777778888999999999999999999999999999999996 78765554 676777777666
Q ss_pred HHhhch------HHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q psy3157 292 LGLYKS------VYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STK--AFSQLMMVTFLGFFIGPAIGGHVIHYE--- 358 (822)
Q Consensus 292 ~~~a~s------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~--- 358 (822)
+...++ +..+++..++..++... ..+..++.+|+.+. ++| ..++...+..+|..+++.+...+....
T Consensus 97 lf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~ 176 (460)
T PRK11462 97 AYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGD 176 (460)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 554432 33445555566666654 56677888888863 444 578778888888888877766555433
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 359 ---NGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 359 ---~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.+|+....+.+++.+++.++.++..+|
T Consensus 177 ~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 177 NKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 257777777777666655544433333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=117.44 Aligned_cols=134 Identities=26% Similarity=0.432 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc
Q psy3157 251 ASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS 329 (822)
Q Consensus 251 ~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~ 329 (822)
.+.+.++..++++++|++.||+|||+.+..+..+..++.++..+.++++.+++.+++.|++.+. .+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 3456788889999999999999999999999999999988888889999999999999999886 788889999999874
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 330 --TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 330 --~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.+++++.+....+|..++|.+++.+.+.. +|++.+++.+++.++..+..++..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 55689999999999999999999998876 89999999888877777665555554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=131.15 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChH-HHHHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRKT-ILLTCLFTCIVSYL 290 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr~-~l~~~~ll~~i~~l 290 (822)
++.+...........++..|..+.+|+++..+|.+..+.=+--++.-|+.|.++|| +||++ -++++.+..++.+.
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 35666666777778888888999999999999999999999999999999999995 78655 55577788888888
Q ss_pred HHHhhc------hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cch--HHHHHHHHHHHHHHHHHHHHHHHHhcc--
Q psy3157 291 LLGLYK------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-- 358 (822)
Q Consensus 291 l~~~a~------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-- 358 (822)
++..++ +....++...+.+++... ..+-.++.+++.+. ++| ..++-..+.++|..+...+...+....
T Consensus 99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 877765 345566667788887765 56677788888753 455 467766677777665555554444322
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 359 ----NGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 359 ----~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
.||+....+.+++..+..+.+++-.+|..
T Consensus 179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 37888888888887777776666555543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=131.20 Aligned_cols=159 Identities=13% Similarity=0.211 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFF 303 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i 303 (822)
.......++|.|+++.+|++..+.+++.+...++.+++.+++|+++||+|||+.+..+.+...+........++.+.+++
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG 310 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445567788888889999999999888888888889999999999999999888776666655555555677777788
Q ss_pred HHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYW 381 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~ 381 (822)
.+++.+++.|. .+....+..|.+|+ +++++++++....+|..+||.++|.+.+.. ||++.|++.+++.++.+++. +
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~-~ 388 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCL-L 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH-H
Confidence 88888887775 56667788899886 466789888889999999999999999987 99999998887777666553 3
Q ss_pred hcc
Q psy3157 382 VVT 384 (822)
Q Consensus 382 ~~~ 384 (822)
+.|
T Consensus 389 ~~~ 391 (393)
T PRK15011 389 RIK 391 (393)
T ss_pred hhc
Confidence 444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-10 Score=124.03 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVL----LSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTCIV 287 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g----~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~~i 287 (822)
.+.+.-+..+++++.....+..|+..+++ ++.++..-+.+.|..-.-+...++||++||+ |+|+++.+|.++..+
T Consensus 25 ~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~i 104 (498)
T COG3104 25 LIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAI 104 (498)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 56678888999999999999999988888 9988887777777666667889999999995 999999999999999
Q ss_pred HHHHHHhhc--hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy3157 288 SYLLLGLYK--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD----STKAFSQLMMVTFLGFFIGPAIGGHVIHYENG 360 (822)
Q Consensus 288 ~~ll~~~a~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~----~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g 360 (822)
+.++.+.+. +...++++.++.++|.|. =+...++++|.+|+ |.++++++.++.++|+.++|++.+++.+.. |
T Consensus 105 Gh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g 183 (498)
T COG3104 105 GHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-G 183 (498)
T ss_pred HHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-C
Confidence 999999984 788999999999999996 57888999999975 234688999999999999999999999998 9
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy3157 361 FFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 361 w~~~f~i~~~~~li~~ll~~ 380 (822)
|...|...++-..+.++..+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777766533
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=133.03 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhhc
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL---LGLYK 296 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll---~~~a~ 296 (822)
+.....+....++|.|+++.+|.+..+.++..+...++..++.+++|+++||+|||+++.++.++..++.+. ...++
T Consensus 261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 340 (490)
T PRK10642 261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN 340 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555566778888888778999888888888889999999999999999999999988777654433322 22245
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
+...+++++++.|++.+. ......++.|++|++.|+ +|+......+++.++|.+.+++.+..++|+..+++..++.+
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 420 (490)
T PRK10642 341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV 420 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 677778888988887764 566778888999987664 66544444566788999999988765457777766666555
Q ss_pred HHHHHHhhhcccCCCC
Q psy3157 374 VNFVYTYWVVTDVKKY 389 (822)
Q Consensus 374 i~~ll~~~~~~e~~~~ 389 (822)
+.++. .+++||+++.
T Consensus 421 i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 421 IGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHH-HHHhccccCC
Confidence 55544 4556887664
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=138.21 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhc
Q psy3157 248 GAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDIC 326 (822)
Q Consensus 248 g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~ 326 (822)
.+...+..++.+++.+++|+++||+|||+++++++++++++.++.+++++...+++++++.|++.++ ++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445667788899999999999999999999999999999999999988888888888888887765 788899999999
Q ss_pred ccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 327 VDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 327 p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
|.+ ++++|+.+.+..+|.++||++++.+... +...+|++.+++.++++++. +++||++.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~-~~LPET~~ 738 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLA-LKLPDTRG 738 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence 975 4568999999999999999999988775 45667777777776665553 45587654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=130.69 Aligned_cols=162 Identities=11% Similarity=0.117 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 225 ASLIVPLVNNYLRTQVLLS--------NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g~s--------~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
.......++.|+.+ .|.+ ....+.+.++..++.+++.++.|+++||+|+|+++.++.++.+++.++.....
T Consensus 224 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~ 302 (418)
T TIGR00889 224 LQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD 302 (418)
T ss_pred HHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444555666654 4533 36678999999999999999999999999999999999999888876666532
Q ss_pred ----hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHH-HHHHHHHHHHHHHHHHHHhccc-----chHH
Q psy3157 297 ----SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLM-MVTFLGFFIGPAIGGHVIHYEN-----GFFY 363 (822)
Q Consensus 297 ----s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~-~~~~iG~~igp~l~g~l~~~~~-----gw~~ 363 (822)
+++.+++.+++.|++.+. .+....++.|++|++ ++++|+.+ ...++|.++||+++|.+.+..+ ||+.
T Consensus 303 ~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~ 382 (418)
T TIGR00889 303 PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT 382 (418)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH
Confidence 245667788999999886 677788999999975 45688886 5678999999999999998742 6999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 364 ICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+|++.+++.++++++.+++++++.
T Consensus 383 ~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 383 MWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999988888888777777653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=134.13 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH--
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYL-- 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~l-- 290 (822)
.+++..++..........++|.|+++.+|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~ 341 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG 341 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence 344455555555555677889999888999999999999999999999999999999999999877655444333322
Q ss_pred HHHhhchHHHHHHHHHHhhcccc-hhhHHHHHHHHhcccc--chHHHHHHHHHHH-HHHHHHHHHHHHHh----------
Q psy3157 291 LLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDS--TKAFSQLMMVTFL-GFFIGPAIGGHVIH---------- 356 (822)
Q Consensus 291 l~~~a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~--~ra~g~~~~~~~i-G~~igp~l~g~l~~---------- 356 (822)
.....++.+.+++.+++.|++.. ..........|.+|++ +++.|+.+...++ |.+++|.+.|++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~ 421 (467)
T PRK09556 342 VYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFG 421 (467)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccc
Confidence 22334566667777888886543 3334446677999985 4568899888886 77999999999999
Q ss_pred --cccchHHHHHHHHHHHHHHHHHHh
Q psy3157 357 --YENGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 357 --~~~gw~~~f~i~~~~~li~~ll~~ 380 (822)
.. +|+..|++.+++.++++++.+
T Consensus 422 ~~~~-~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 422 YTLT-GWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccc-ChHHHHHHHHHHHHHHHHHHH
Confidence 33 799999998877777665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=126.87 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy3157 225 ASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFV 304 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~ 304 (822)
.......+|.++.+++|.+..+.+++.+...+...++.+++|++.||+|||+++.++.++..+..+...+.++.+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLML 294 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778877899999999998888877788889999999999999999888877766666666667788888888
Q ss_pred HHHhhcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 305 RILLGLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 305 r~l~Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+++.|++.|. .+....++.|..|++ ++++++++....+|..+||.++|.+.+.. ||+..|++.+++.++..++.
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Confidence 8999998885 677778889998864 56789999899999999999999999887 89999999888877766653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-11 Score=130.47 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=69.7
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc------------
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE------------ 358 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~------------ 358 (822)
...+++.+++..++.|.|.+. .+....++++..+++ .|.+++.+.++++|.++||.+++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 456899999999999999997 899999999998764 45699999999999999999999887421
Q ss_pred ---cchHHHHHHHHHHHHHHHHH
Q psy3157 359 ---NGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 359 ---~gw~~~f~i~~~~~li~~ll 378 (822)
..|++.+++.+++.++..++
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 26899998777665554443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=130.69 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHH
Q psy3157 241 LLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCK 319 (822)
Q Consensus 241 g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~ 319 (822)
+.+..+.|++.++..++..++.+++|+++||+|+|+.+.++.++.+++.++.+++++++.+++.+++.|++.+. .+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999999898888888899999988899999988875 56777
Q ss_pred HHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 320 AYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 320 ~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.++.+.+|++.++ .+. ++....+|.++||+++|++.+.. ||+..|.+.+++.++..++.++.+++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999887665 333 56778899999999999999987 89999999888887776665555544
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=134.88 Aligned_cols=133 Identities=31% Similarity=0.478 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccc---hhhHHHHHHHHhccccc
Q psy3157 254 FSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKH---TQVLCKAYISDICVDST 330 (822)
Q Consensus 254 ~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g---~~~~~~~~i~e~~p~~~ 330 (822)
..+..++..+..|.++||+|||..+.+.++...+..++..+.. + ++++ +.|+..+ ......++++|....+.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-H-HHhh---hcccccchhhhhhhhhhheeeccchhH
Confidence 3677888999999999999999999998888887777766655 3 3333 5555554 36788899999998766
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q psy3157 331 K--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTR 392 (822)
Q Consensus 331 r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~~~ 392 (822)
| .+|+.+..+..+..++|.+++.+.... |.-.+|++.++..++..+..++++||+..++.+
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 6 488899999999999999999999986 899999999999999998888899987765433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=128.92 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++.......+..++|.|+++.+|++..+.+++.+.+.++..++.+++|+++||+|||+++.....+.++..++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~ 289 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 33444444455556677889999888999999999999999999999999999999999999998888777777766666
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
..++.+.+.+..++.|++.+. ++...++..+..|. +.+..+....+..+|..+||.+.|++.+.. ||+..+++.+++
T Consensus 290 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~~~~~~~ 368 (394)
T PRK03699 290 NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAALLTANGL 368 (394)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CchhhhhhhHHH
Confidence 677777777777888887765 67777777787764 355678888888999999999999999987 899999988888
Q ss_pred HHHHHHH
Q psy3157 372 FVVNFVY 378 (822)
Q Consensus 372 ~li~~ll 378 (822)
.+++.++
T Consensus 369 ~~~~~~~ 375 (394)
T PRK03699 369 YAVVFVM 375 (394)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-10 Score=123.74 Aligned_cols=164 Identities=24% Similarity=0.283 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKT-ILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~-~l~~~~ll~~i~~ll~~ 293 (822)
.+..++............+.+..+.+|.+..+.++..+...++..++.+++|++.||+|||+ .+.++.++..++.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444555556667778888888777999999999999999999999999999999999999 99999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
..++.+.+++..++.|++.+. .+....++.|..|++ ++.+|+.+....+|..++|.+.+.+.+.. +|++.+++.++
T Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~ 339 (352)
T cd06174 261 LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAA 339 (352)
T ss_pred HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHH
Confidence 988899999999999999986 888899999999965 45689999999999999999999999876 99999999998
Q ss_pred HHHHHHHHH
Q psy3157 371 LFVVNFVYT 379 (822)
Q Consensus 371 ~~li~~ll~ 379 (822)
+.++..++.
T Consensus 340 ~~~i~~i~~ 348 (352)
T cd06174 340 LALLAALLL 348 (352)
T ss_pred HHHHHHHHh
Confidence 888776653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-10 Score=126.33 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
.+.....++++.|+.+ .|.+ ..++..+.+.++..++.+++|++.||+|+|+.+.++.++.+++.++..+.++.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T PRK05122 230 IGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMAL 306 (399)
T ss_pred HHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344455666666654 4653 456677788889999999999999999999999988888888888888888888888
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+..++.|++.+. ++.....+.+.+|++ ++++|+++....+|..++|++.|.+.+.. ||++.|++.+++.++..++.
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH
Confidence 889999999885 677777788888864 56689999999999999999999999887 89999999888887776665
Q ss_pred hhhcc
Q psy3157 380 YWVVT 384 (822)
Q Consensus 380 ~~~~~ 384 (822)
+++.+
T Consensus 386 ~~~~~ 390 (399)
T PRK05122 386 WLLYR 390 (399)
T ss_pred HHhcc
Confidence 54433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=123.28 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-eccc-CccchhHHHHHHHHHHHHHHH
Q psy3157 590 IFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSR-NSYSSLYYSFILLTVSILALY 667 (822)
Q Consensus 590 ~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~-~~~~~l~~~~~l~~~~~~~l~ 667 (822)
+++..++..-......+.-..|....+|++..+..++.....++++++.++.| .+++ +.++.+.++.++..+..+...
T Consensus 257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 44445555555555666667788888999999998888888889999999999 6665 555555666666655544433
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhh
Q psy3157 668 VSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQ 747 (822)
Q Consensus 668 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (822)
+......+..+..+.+.+.+ |.++ ....+..+
T Consensus 337 ~~~~~~~f~i~gll~g~s~G----~~qA--------------------------------------------~SRSy~~~ 368 (438)
T COG2270 337 FLEGELDFWILGLLVGTSLG----GAQA--------------------------------------------SSRSYLAR 368 (438)
T ss_pred HccccHHHHHHHHHHHHhcc----hHHH--------------------------------------------HHHHHHHH
Confidence 33322222222222222221 2332 11122222
Q ss_pred cccCccccchhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 748 KCQGDVFGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 748 ~~~g~~~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
..+.++.+ ..+|+++...-.+.++||.+.|.+.+.||+ ....++.-+++.++|.++
T Consensus 369 lvp~~k~~-~fFglyaltgra~S~~gp~lv~v~t~iTg~-~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 369 LVPKGKEG-RFFGLYALTGRAASFLGPFLVAVITQITGS-SRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred hCCCcccc-ceeehhhhhhhHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHhhHhh
Confidence 32333444 599999999999999999999999999985 554555656666777776
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=124.90 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH-HHHHhhchHHHHHHH
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSY-LLLGLYKSVYVIFFV 304 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~-ll~~~a~s~~~l~i~ 304 (822)
.....+++.++.+.+|.+..+.+++.+...++.+++.+++|+++||+|||.+... ..+..++. ++....++.+.++++
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 300 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVL 300 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHH
Confidence 3344566667777789999999999999999999999999999999998875444 33333333 334456778888888
Q ss_pred HHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Q psy3157 305 RILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 305 r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~ 382 (822)
.++.|++.+. .+...+.+.+..|+ +++++|+++....+|..+||+++|.+.+.. |++.+|++.+++.++++++.+..
T Consensus 301 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 301 SIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 8888998764 55566777787775 566789999899999999999999999997 99999999998888777765554
Q ss_pred c
Q psy3157 383 V 383 (822)
Q Consensus 383 ~ 383 (822)
.
T Consensus 380 ~ 380 (390)
T PRK03545 380 F 380 (390)
T ss_pred c
Confidence 4
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=126.29 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
........++|.++.+ .|.+..+.+++.+...++.+++.+++|+++||+|||+.+.++.+..+++.++..+.++.+.++
T Consensus 234 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T PRK11551 234 IVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGML 312 (406)
T ss_pred HHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3344455567777765 799999999999999999999999999999999999998887777777777677777877777
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+..++.|++.+. .+...+++.|.+|++ ++++|+.+....+|..+||.++|.+.+...+|...+++.+.+.++..++.
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 777888887764 777888999999875 55689999999999999999999999876567777777666666555554
Q ss_pred hhh
Q psy3157 380 YWV 382 (822)
Q Consensus 380 ~~~ 382 (822)
++.
T Consensus 393 ~~~ 395 (406)
T PRK11551 393 LLL 395 (406)
T ss_pred HHH
Confidence 433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-10 Score=125.36 Aligned_cols=163 Identities=23% Similarity=0.336 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchH
Q psy3157 222 LFAASLIVPLVNNYLRTQVLLSN---FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV 298 (822)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~~g~s~---~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~ 298 (822)
........+.++.|+.+..+... ...+.+.++..++..++.+++|+++||+|||+++.++.++.+++.+...+.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP 311 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 34445556777777766433222 234566677788888999999999999999999999988888877777777888
Q ss_pred HHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy3157 299 YVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVN 375 (822)
Q Consensus 299 ~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~ 375 (822)
+.+++.+++.|++.+. .+...+++.+..|++ ++.+++++....+|..+||.++|.+.+.. ||++.|++.+++.++.
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~ 390 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFN 390 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHH
Confidence 8888899999999886 777778888887764 56689999999999999999999999887 8999999999888887
Q ss_pred HHHHhhhccc
Q psy3157 376 FVYTYWVVTD 385 (822)
Q Consensus 376 ~ll~~~~~~e 385 (822)
.++.++..++
T Consensus 391 ~~~~~~~~~~ 400 (408)
T PRK09874 391 AVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHHH
Confidence 7765554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-10 Score=123.74 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchH--HH
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV--YV 300 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~--~~ 300 (822)
..........+.|.+ +++.+..+.+++.+...++..++++++|+++||+|||+.+.++.++.+++.++..+.++. ..
T Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T TIGR00890 219 VSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVL 297 (377)
T ss_pred HHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHH
Confidence 333334445555554 589999999999999999999999999999999999999999988888888777766543 33
Q ss_pred HHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy3157 301 IFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNF 376 (822)
Q Consensus 301 l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ 376 (822)
+++..++.|++.|. .+....++.|.+|++ +++.|+++....+|..+||.++|.+.+.. ||++.|++.+++.+++.
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence 44556777887775 666778899999874 55689999999999999999999999887 99999998887766543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=124.29 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRI 306 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~ 306 (822)
....++|.|+++.+|.+....|++.+...++.+++.++.|++.||.++++.+..+.++.+++.++..+.++++.++++.+
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34556777888778999999999999999999999999999999988888888888888888887788888888888888
Q ss_pred Hhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhc
Q psy3157 307 LLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 307 l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~ 383 (822)
+.|++.+. .+...+++.+.+|+ +++++|++.....+|..+||.+.|.+.+.. |++..+++.+++.++..++..+.+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHhc
Confidence 88988876 56677889999986 466799999999999999999999999987 888888888877766666656666
Q ss_pred ccCCC
Q psy3157 384 TDVKK 388 (822)
Q Consensus 384 ~e~~~ 388 (822)
++.+.
T Consensus 400 ~~~~~ 404 (417)
T PRK10489 400 GELRR 404 (417)
T ss_pred ccccc
Confidence 65543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-10 Score=122.48 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH--HHH------HHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKT--ILL------TCLFT 284 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~--~l~------~~~ll 284 (822)
...+..++..........++|.|+.+.+|.+..+.+++.+...++..++.+++|+++||+|||+ ... ++.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV 298 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3444555556666677788888998889999999999999999999999999999999999986 111 11111
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcccchhhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccc-h
Q psy3157 285 CIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENG-F 361 (822)
Q Consensus 285 ~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w 361 (822)
.++........++.+..+...++.+++.+..+...+++.|.+|++. +++|+.+....+|..++|.+.|.+.+.. | |
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-g~~ 377 (399)
T TIGR00893 299 LSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-GSF 377 (399)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-Cch
Confidence 1111111122234444444444444444457888899999999754 4689999999999999999999999987 6 9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy3157 362 FYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~ 380 (822)
++.|++.+++.++..++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 378 AGALMVVAALALIGALSYL 396 (399)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999988888777666543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-09 Score=121.06 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-TCLFTCIVSYLLLG 293 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-~~~ll~~i~~ll~~ 293 (822)
.+..++..........++|.|+++ +|.+..+.+++.+...++..++.+++|+++||+|||+.+. .+.+..+++.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~ 306 (402)
T TIGR00897 228 GMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY 306 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 334444445555566778877765 8999999999999999999999999999999999888664 33333333322222
Q ss_pred h-----hchHHHHHHHHHHhhcccchhhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 294 L-----YKSVYVIFFVRILLGLFKHTQVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 294 ~-----a~s~~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
+ .++.+.+++..++.|++.+...+....+.+..|+ +++++|+.+....+|..+||.++|.+.+.. ||...+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~ 385 (402)
T TIGR00897 307 YIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWI 385 (402)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHH
Confidence 1 3466677778888888877533345566777664 566799999999999999999999999987 99999999
Q ss_pred HHHHHHHHHHHHhh
Q psy3157 368 TSALFVVNFVYTYW 381 (822)
Q Consensus 368 ~~~~~li~~ll~~~ 381 (822)
.+++.++..++.++
T Consensus 386 ~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 386 FAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888777666443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-09 Score=119.56 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFF 303 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i 303 (822)
.......++|.|+++ .|.+..+.|++.+...++.++++++.|+++||+|+|+++..+.++.+++.+... . ...++.
T Consensus 215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~ 290 (381)
T PRK03633 215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAP 290 (381)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHH
Confidence 344445567777775 799999999999999999999999999999999999999888777776655443 2 233344
Q ss_pred HHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
..++.|++.+. .+...+.+.|..|++.+ ..+.++..+++|.++||.++|++.+.. ||++.|++.+++.++..++
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHH
Confidence 56777776654 78888888898876433 467777889999999999999999987 8999999988887766544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-09 Score=119.91 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++..........++|.++.+ +|.+..+.|++.+.+.++.+++.+++|++.||+|||+.+.++..+.+++.++..
T Consensus 210 l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 210 LGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 3334444455556667788888876 899999999999999999999999999999999999999888877777666554
Q ss_pred h-hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcc-cc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy3157 294 L-YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICV-DS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMT 368 (822)
Q Consensus 294 ~-a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~ 368 (822)
. ..+...+. .++.|++.+. .+.......+.++ ++ ++.+|+.+....++..+||.+.|++.+..++|...|++.
T Consensus 289 ~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~ 366 (393)
T PRK09705 289 WLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFH 366 (393)
T ss_pred HccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3 33322222 3456777765 6666666677775 33 456888888899999999999999999875688888888
Q ss_pred HHHHHHHHHHHhhhcccCCCC
Q psy3157 369 SALFVVNFVYTYWVVTDVKKY 389 (822)
Q Consensus 369 ~~~~li~~ll~~~~~~e~~~~ 389 (822)
+++.++..++..++.||++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 367 ALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHHHHHHhccccccc
Confidence 887777776666677776554
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-10 Score=121.79 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc------hHH-
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK------SVY- 299 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~------s~~- 299 (822)
+....+..|.++.+| +....-|+..+|.+.+....+++-|+.|++|-|...+++..+.+++..+-..+. .++
T Consensus 62 I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~ 140 (480)
T KOG2563|consen 62 IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR 140 (480)
T ss_pred eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh
Confidence 333445557777888 777778999999999999999999999999999999999999999998876653 233
Q ss_pred -HHHHHHHHhhcccch-hhHHHHHHHHhccccchHHH--HHHHHHHHHHHHHHHHHHHHHhcc-----cchHH--HHHHH
Q psy3157 300 -VIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFS--QLMMVTFLGFFIGPAIGGHVIHYE-----NGFFY--ICCMT 368 (822)
Q Consensus 300 -~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g--~~~~~~~iG~~igp~l~g~l~~~~-----~gw~~--~f~i~ 368 (822)
..+++..+.+.+.-. .....-+..-||++++|+.+ +-.++..+|.++|.++...+.... ..|.. .|+..
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~ 220 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGV 220 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHH
Confidence 444555666555544 22223455668998877633 333444577777777666666543 13443 34444
Q ss_pred HHHHHHHHHHHhhhccc
Q psy3157 369 SALFVVNFVYTYWVVTD 385 (822)
Q Consensus 369 ~~~~li~~ll~~~~~~e 385 (822)
+++..+.+++..+..++
T Consensus 221 ~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 221 ECLAALLLALVLFVFTK 237 (480)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 44444444443333333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=121.14 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
........+++.|+.+ .+.+. .++..+.+.++.+++++++|++.||+|+|+.+.++..+.+++.++..+.++.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVAL 306 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3344455666667765 56653 45666777888889999999999999999999999888888888888888888888
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
++.++.|++.+. .+...+.+.+.+|++ ++++|+++....+|..+||+++|++.+.. ||++.|++.+++.++..++.
T Consensus 307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 889999998886 677778888888864 45689999999999999999999999987 99999999998887777665
Q ss_pred hhhc
Q psy3157 380 YWVV 383 (822)
Q Consensus 380 ~~~~ 383 (822)
++..
T Consensus 386 ~~~~ 389 (392)
T PRK12382 386 ILSF 389 (392)
T ss_pred Hhhc
Confidence 5443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=118.86 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
..+..++.........++.+.|+++ +|.+..++|++.++..++.+++.+++|++.||+|+|+++.++.+..++..++.+
T Consensus 210 ~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 210 FLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666677788888875 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLM-MVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~-~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
++++++.+++..++.|++.|. .+....++.+. |++.+ +.++++ ...++|.++||.++|++.+.. |+ ..|++.+
T Consensus 289 ~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~ 365 (382)
T TIGR00902 289 AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMA 365 (382)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHH
Confidence 999999999999999999996 78888899987 76544 477765 567899999999999999998 76 6677777
Q ss_pred HHHHHHHHH
Q psy3157 370 ALFVVNFVY 378 (822)
Q Consensus 370 ~~~li~~ll 378 (822)
++.++.+++
T Consensus 366 ~~~~~~~~~ 374 (382)
T TIGR00902 366 IIAAAAFFL 374 (382)
T ss_pred HHHHHHHHH
Confidence 777655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-09 Score=119.76 Aligned_cols=166 Identities=14% Similarity=0.232 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---h
Q psy3157 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL---Y 295 (822)
Q Consensus 219 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~---a 295 (822)
+..........++.|.|+++.+|.+......+..+..+...++.+++|+++||+|||+++.++.++.+++.+.... .
T Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (438)
T PRK09952 260 LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334455556678888888889999877666666667777888999999999999999988877665554433322 2
Q ss_pred -chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHH
Q psy3157 296 -KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYE-NGFFYICCMTS 369 (822)
Q Consensus 296 -~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~-~gw~~~f~i~~ 369 (822)
++.+.+++..++.|++.+. .+...++++|.+|.+.|+ .|+ ++.+..+|+.++|.+.+++.+.. ++|+..+.+.+
T Consensus 340 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~ 419 (438)
T PRK09952 340 QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL 419 (438)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 2344444556666777775 677889999999987774 555 34455689999999999998854 35888888877
Q ss_pred HHHHHHHHHHhhhccc
Q psy3157 370 ALFVVNFVYTYWVVTD 385 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e 385 (822)
++.++.++.. +.+++
T Consensus 420 ~~~~i~~v~~-~~~~~ 434 (438)
T PRK09952 420 AGCLISAMTA-LLMKD 434 (438)
T ss_pred HHHHHHHHHH-HHccc
Confidence 7777766654 34454
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=112.03 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=91.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----ChHHHH-HHHHHHHHHHHHHHhh-----c--------h
Q psy3157 237 RTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-----RKTILL-TCLFTCIVSYLLLGLY-----K--------S 297 (822)
Q Consensus 237 ~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G-----rr~~l~-~~~ll~~i~~ll~~~a-----~--------s 297 (822)
..|++++..-.+.+.++..+.. ...+.+|+.+|+.+ ||..++ .|.++...+..+.+++ . .
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 3468888888888888877765 46899999999999 887777 4555555555544432 2 2
Q ss_pred H-H--HHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 298 V-Y--VIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 298 ~-~--~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
+ + ...+...+.|+|.+. .++..++++|..|++ .|+.++.....-+|.+++.++.|.+++.+..-|.
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 2 2 223345666777775 788899999999874 5568998888899999999999998877633343
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=123.52 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--chHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY--KSVYVIFFVR 305 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a--~s~~~l~i~r 305 (822)
...++|.|+++++|++..+.+++.+...++.+++.+++|+++||+|||+++.++.++.+++.++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 45678888887899999999999999999999999999999999999999888877666655544332 3334444444
Q ss_pred HHhhcc-cchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy3157 306 ILLGLF-KHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVV 374 (822)
Q Consensus 306 ~l~Gig-~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li 374 (822)
++.++. .+..+...+++.|.+|++ ++++|++.....+|..+||+++|.+.+.. ||+..+.+.++...+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence 444433 333556677889999874 55688888888999999999999999987 898887665554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=120.63 Aligned_cols=170 Identities=13% Similarity=0.062 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHH-HHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GRKTILL-TCLFTCIVSY 289 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Grr~~l~-~~~ll~~i~~ 289 (822)
...+..++..........++|.|+++.+|++..+.+++..++.++..++.+++|+++||+ |||.... +...+..++.
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~ 336 (452)
T PRK11273 257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 336 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 344444444455556677889999988899999999999999999999999999999999 5554322 2222333333
Q ss_pred HHHHh--hchHHHHHHHHHHhhcccc-hhhHHHHHHHHhcccc--chHHHHHHHHHHHHHH-HHHHHHHHHHhcccchHH
Q psy3157 290 LLLGL--YKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDS--TKAFSQLMMVTFLGFF-IGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 290 ll~~~--a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~-igp~l~g~l~~~~~gw~~ 363 (822)
++..+ ..+.+.++++.++.|.+.. .......+..|.+|++ ++++|+.+....+|.. +||.++|.+.+.. ||++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~~ 415 (452)
T PRK11273 337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 415 (452)
T ss_pred HHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cchH
Confidence 32222 2344444455555555432 2333445677999875 5568888887778765 5899999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q psy3157 364 ICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~ 383 (822)
.|+++++++++++++..++.
T Consensus 416 ~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 416 GFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988888777766654443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-09 Score=118.27 Aligned_cols=170 Identities=20% Similarity=0.284 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK--TILLTCLFTCIVSYLLL 292 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr--~~l~~~~ll~~i~~ll~ 292 (822)
.+..++..-+...+......|..+++|++..+...+..+..+..++|++++|++.||+|.| ++++++++++.+..+..
T Consensus 287 Lia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g 366 (477)
T PF11700_consen 287 LIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG 366 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 3445555566777777778889989999999999999999999999999999999999999 88888887776665555
Q ss_pred Hh--------hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 293 GL--------YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 293 ~~--------a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
.+ .++.+.+++.-++.|++.|. ++..-++++++.|+. ...+|++.+..-....+||++.|.+.+..++-
T Consensus 367 ~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 367 LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ 446 (477)
T ss_pred HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55 67888899999999999997 899999999999984 44599999999999999999999999998668
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 362 FYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
|+.+....++.++.+++. +.++.
T Consensus 447 r~g~~~l~~lf~~gl~ll-~~v~~ 469 (477)
T PF11700_consen 447 RYGFLFLLVLFLIGLILL-FFVDV 469 (477)
T ss_pred hhHHHHHHHHHHHHHHHH-hhccc
Confidence 999998888888777764 44443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=127.01 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHH--HHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GRKTILL--TCLFTCIVSYLL 291 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Grr~~l~--~~~ll~~i~~ll 291 (822)
+..++...+......+++.|+.+ +|.+..+.+++.++..++.+++++++|+++||. ++|+... ++.++.+++.++
T Consensus 248 ~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 248 SGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555677778765 799999999999999999999999999999984 3343333 334444455556
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMT 368 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~ 368 (822)
..+.++++.+++.+++.|++.+. .+...+++.|.+|++ ++++|+++...++|.++||+++|.+.+..++|++.|++.
T Consensus 327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~ 406 (455)
T TIGR00892 327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS 406 (455)
T ss_pred HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence 66778888888999999999886 777889999999874 556899999999999999999999998765699999988
Q ss_pred HHHHHHHHH
Q psy3157 369 SALFVVNFV 377 (822)
Q Consensus 369 ~~~~li~~l 377 (822)
+++.+++.+
T Consensus 407 ~~~~li~~~ 415 (455)
T TIGR00892 407 GSIVVSAGL 415 (455)
T ss_pred hHHHHHHHH
Confidence 887666554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-09 Score=118.14 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH--HH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSY--LL 291 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~--ll 291 (822)
+....++..........++|.|+++.+|.+..+.+++.+...++..++.+++|+++||+|||+.+.++..+..+.. ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 303 (394)
T TIGR00883 224 GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667788888877899999999999999999999999999999999999998775544443332 22
Q ss_pred HHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 292 LGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 292 ~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
..+ .++.+.+++..++.|++.+. .++..+++.|.+|++.| ++++ ++.+..+|..++|.++|.+.+..++|++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 222 24666667777888888775 78889999999997544 5666 456667899999999999999873388877
Q ss_pred HHHHHHHH
Q psy3157 366 CMTSALFV 373 (822)
Q Consensus 366 ~i~~~~~l 373 (822)
+..++..+
T Consensus 384 ~~~~~~~l 391 (394)
T TIGR00883 384 YYLAALAL 391 (394)
T ss_pred HHHHHHHH
Confidence 76665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=122.26 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----hc------h
Q psy3157 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL-----YK------S 297 (822)
Q Consensus 229 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~-----a~------s 297 (822)
..+.+.++ +++|.+..+.++......++.+++.+++|+++||+|||+.+.++.++.+++.++.++ .+ +
T Consensus 304 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 304 MYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 33444444 458999888889999999999999999999999999999999888877777666652 11 2
Q ss_pred HHHHHHHHHHhh-cccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy3157 298 VYVIFFVRILLG-LFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVV 374 (822)
Q Consensus 298 ~~~l~i~r~l~G-ig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li 374 (822)
...+....++.+ ++.+..+....++.|.+|++ ++++|+.+....+|.+++|.+.+.+.+.. +|++.|++.+++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVL 461 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHH
Confidence 222222222222 22233456677889999875 45689999999999999999999999886 899999999988888
Q ss_pred HHHHHhhhcccCCC
Q psy3157 375 NFVYTYWVVTDVKK 388 (822)
Q Consensus 375 ~~ll~~~~~~e~~~ 388 (822)
.+++..++.||+++
T Consensus 462 ~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 462 GLIFVYFFLPETKG 475 (481)
T ss_pred HHHHHheecccCCC
Confidence 87776666676543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-09 Score=118.33 Aligned_cols=170 Identities=17% Similarity=0.145 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CC-hHHHHH---HHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GR-KTILLT---CLFTCIV 287 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Gr-r~~l~~---~~ll~~i 287 (822)
+.+..++..........++|.|+.+++|++..+.++..+.+.++..++.+++|+++||+ ++ +..... +.++..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence 33344444445555667888898777899999999999999999999999999999999 33 332222 2221211
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcccc-hhhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy3157 288 SYLLLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYI 364 (822)
Q Consensus 288 ~~ll~~~a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~ 364 (822)
+.+... ..+...+.+..++.|++.. .......++.|.+|++. +++|+.+....+|.+++|++.|++.+.. ||+.+
T Consensus 328 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~~~ 405 (434)
T PRK11663 328 SLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWTGF 405 (434)
T ss_pred HHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccHHH
Confidence 111111 2233333344444454432 23334556788887654 4589999999999999999999999987 89999
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q psy3157 365 CCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~e 385 (822)
|++.+++.++..+..+...++
T Consensus 406 f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 406 FVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999998888777665544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=116.66 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHH
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVY 299 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~ 299 (822)
+..+....+...+|.+.++.+|.+....|++.+++.+|.++|+++.+++.+|+++++++..+.++++++.+..+++++.+
T Consensus 229 ~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 229 LFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH
Confidence 33344444556678888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy3157 300 VIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNF 376 (822)
Q Consensus 300 ~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ 376 (822)
..++..++.|++... .+...+.+.+..|+ ++|.++++.+....+..+|.++.|.+.+.. |.+.++.+.++..++..
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 999999999998875 66777888888887 688899999999999999999999999987 89988888777665555
Q ss_pred HHH
Q psy3157 377 VYT 379 (822)
Q Consensus 377 ll~ 379 (822)
++.
T Consensus 388 ~~~ 390 (524)
T PF05977_consen 388 LIA 390 (524)
T ss_pred HHH
Confidence 543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=113.91 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL-YKSVYVIFFVRI 306 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~-a~s~~~l~i~r~ 306 (822)
...+++.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.++.+++.++... .++.+..++..+
T Consensus 218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 297 (382)
T PRK10091 218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF 297 (382)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445566777778999999999999999999999999999999999999998888877777655543 445555555666
Q ss_pred Hhhcccch-hhHHH-HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Q psy3157 307 LLGLFKHT-QVLCK-AYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 307 l~Gig~g~-~~~~~-~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~ 382 (822)
+.+++.+. .++.. ....+..+++.++.+..+....+|..+||.++|++.+...+|++.+.+.+++.++...+...+
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 298 ICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 66666543 33333 333444444555555556778999999999999999865589999998877766655544333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-08 Score=110.86 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.....+++...+.....+++.+++++..|++...++++..++.++..+|..++|+++|| +.|+.+....++.++..+..
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l 293 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLAL 293 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence 34455666666677777888888999999999999999999999999999999999999 88888888877766666666
Q ss_pred Hh-hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GL-YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~-a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
.+ ..+.+..++.-++.|+..+. .......+++..|+ +..+.++....+++|..+|..+||.+.+.. |+....++.+
T Consensus 294 ~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~~~~~~a 372 (394)
T COG2814 294 TFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAATGWVGA 372 (394)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHH
Confidence 55 45566666667776766654 44555555664444 455799999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHhhhcc
Q psy3157 370 ALFVVNFVYTYWVVT 384 (822)
Q Consensus 370 ~~~li~~ll~~~~~~ 384 (822)
++.++++++.++..+
T Consensus 373 ~l~~~a~~~~~~~~~ 387 (394)
T COG2814 373 ALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888877655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-09 Score=115.91 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH-HHHhhchHHHHHH
Q psy3157 225 ASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYL-LLGLYKSVYVIFF 303 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~l-l~~~a~s~~~l~i 303 (822)
......++|.|+.+++|++..+.+++.+...++.+++.++.|+++||+|||+.+.++.++.++..+ +....++.+.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (405)
T TIGR00891 254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGL 333 (405)
T ss_pred HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 334456677888888999999999999999999999999999999999999998887766533333 3334456666666
Q ss_pred HHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
..++.|++.+. .+...+++.|.+|++ ++++|+.+....+|..+||+++|.+.+..+.|+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 66777766553 677788999999874 55689989999999999999999999987238776654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=113.52 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy3157 225 ASLIVPLVNNYLRTQV---LLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~---g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l 301 (822)
........+.|+.+.+ +.+....|++.++..+...++.++.|++.||+|+|+.+.++.++.++..++...+++.+.+
T Consensus 231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~ 310 (396)
T TIGR00882 231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEV 310 (396)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 3334445666666544 5566778999999999999999999999999999999999998888888887888899988
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFV 377 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~l 377 (822)
++..++.|++.+. ......+..+..++|.++ .+. ++....+|.+++|+++|++.+.. ||+.+|++.+++.++..+
T Consensus 311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 8889999988764 445566677777776554 333 56788999999999999999987 999999999998887776
Q ss_pred HHhh
Q psy3157 378 YTYW 381 (822)
Q Consensus 378 l~~~ 381 (822)
+..+
T Consensus 390 ~~~~ 393 (396)
T TIGR00882 390 ISVF 393 (396)
T ss_pred HHHH
Confidence 6543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.5e-09 Score=112.11 Aligned_cols=170 Identities=23% Similarity=0.261 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q psy3157 212 HKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll 291 (822)
|.+++.++....+...+..++|.|++++|+.+..+.|.+...+.+...+..+.+|+|+||+|.++++.+....++++..+
T Consensus 221 W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~ 300 (417)
T COG2223 221 WLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL 300 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHH
Confidence 35666777777777778888999999999999999999999999999999999999999999999999888888887777
Q ss_pred HHhhc-------hHHH----HHHHHHHhhcccchhhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy3157 292 LGLYK-------SVYV----IFFVRILLGLFKHTQVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYEN 359 (822)
Q Consensus 292 ~~~a~-------s~~~----l~i~r~l~Gig~g~~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~ 359 (822)
..+.. +... ++...+..|+|.|. ...++..++|++ +-..|+.....++|+.+-|..-|...+..+
T Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg 377 (417)
T COG2223 301 LSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG 377 (417)
T ss_pred HHccccccccCcchHHHHHHHHHHHHHhccCcch---heeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence 76643 3333 33345555666653 344555666654 445899999999999999999999988875
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcc
Q psy3157 360 GFFYICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 360 gw~~~f~i~~~~~li~~ll~~~~~~ 384 (822)
.+...|++...+.+++.++.+....
T Consensus 378 ~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 378 SYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999888887655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-08 Score=110.38 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..++...........++.|+.+ .|.+..+.|++.++..++..+..++.|++.||+|+|+++.++.++.+++.++.++++
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T PRK11128 213 CVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT 291 (382)
T ss_pred HHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444455666777764 899999999999999999999999999999999999999999999888888888889
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLM-MVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~-~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
+++.+++..++.|++.+. .+....++.+..+. +++..++++ ...++|..+||.++|.+.+.. |+ ..++..+++.+
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~ 369 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVAL 369 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHH
Confidence 999999999999999885 67777777776443 344567665 556778899999999999987 66 46666666655
Q ss_pred HHHH
Q psy3157 374 VNFV 377 (822)
Q Consensus 374 i~~l 377 (822)
+.++
T Consensus 370 ~~~~ 373 (382)
T PRK11128 370 PALF 373 (382)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-08 Score=110.50 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----chHHH
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-----KSVYV 300 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-----~s~~~ 300 (822)
.......|.++.+.+|++..+.++......++..++.+++|+++||+|+|+.+.++.++.+++.++..+. .+++.
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW 311 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 3344456667777789999999998888888899999999999999999999988888777776666543 35666
Q ss_pred HHHHHHHhhcccch-hhHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 301 IFFVRILLGLFKHT-QVLCKAYISDICV-DSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 301 l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
+++..++.|++.+. .+..........+ .++|..+.++....+|..+|+.+++.+.+.. ++....+..++..++.+++
T Consensus 312 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 312 LTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG-GNGLFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC-chHHHHHHHHHHHHHHHHH
Confidence 77778888888875 5544444433333 3677899999999999999999999998876 6655555555444444444
Q ss_pred Hhhhccc
Q psy3157 379 TYWVVTD 385 (822)
Q Consensus 379 ~~~~~~e 385 (822)
..++.++
T Consensus 391 ~~~~~~~ 397 (406)
T PRK15402 391 VRIFLKD 397 (406)
T ss_pred HHHHhcc
Confidence 4444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-09 Score=112.44 Aligned_cols=176 Identities=15% Similarity=0.071 Sum_probs=138.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHH-HHHH
Q psy3157 207 GSLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GRKTILL-TCLF 283 (822)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Grr~~l~-~~~l 283 (822)
.....+.+++.+.+....-..+..+.|.|+.|..|+|....++..+.+-++.+.|.+++|+++||+ |||..+. +.++
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 344455788888888888888999999999999999999999999999999999999999999996 6776554 4444
Q ss_pred HHHHHHHHHHhhc--hHHHHHHHHHHhhcccc-hhhHHHHHHHHhcccc--chHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3157 284 TCIVSYLLLGLYK--SVYVIFFVRILLGLFKH-TQVLCKAYISDICVDS--TKAFSQLMMVTFL-GFFIGPAIGGHVIHY 357 (822)
Q Consensus 284 l~~i~~ll~~~a~--s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~--~ra~g~~~~~~~i-G~~igp~l~g~l~~~ 357 (822)
...++.+...+++ |++...++.++.|+..- ..........|..|++ +.+.|+.+.+..+ |.+.+....|++.+.
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 4444444455554 56888888899999884 4767777888999985 4568888887777 888888888888888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhc
Q psy3157 358 ENGFFYICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 358 ~~gw~~~f~i~~~~~li~~ll~~~~~ 383 (822)
+ ||...|++..+.++++.++.....
T Consensus 410 ~-gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 410 W-GWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred C-CCcchHHHHHHHHHHHHHHHHHHH
Confidence 6 999999988887777766544433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-08 Score=111.88 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hhh
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIAS-TFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL---GLY 295 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s-~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~---~~a 295 (822)
+..........+.+.|+.+.+|++..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..++. +..
T Consensus 233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~ 312 (491)
T PRK11010 233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT 312 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444455666776679999999999874 6668999999999999999999888776655544443322 232
Q ss_pred -chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 296 -KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 296 -~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
++.+.+.+..++..++.|. .+...++..+..+++ ++.+|+.+...++|..++++++|.+.+.. ||+..|.+.+++
T Consensus 313 ~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~ 391 (491)
T PRK11010 313 DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAA 391 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence 3555555555665555553 555678888888874 44588888889999999999999999987 999999988888
Q ss_pred HHHHHHHHhhh
Q psy3157 372 FVVNFVYTYWV 382 (822)
Q Consensus 372 ~li~~ll~~~~ 382 (822)
.++++++..+.
T Consensus 392 ~l~~l~~~~~~ 402 (491)
T PRK11010 392 AVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHH
Confidence 87776664443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-08 Score=108.16 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
..++..-+...+...-..|...++|++..++.++.....+..++|++++|+|.||+|.|+++.++.++..+.++...+..
T Consensus 260 A~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~ 339 (438)
T COG2270 260 ARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE 339 (438)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc
Confidence 34444444555555666677878999999999999999999999999999999999999999999999988888887877
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
.-..++++..+.|++.|. ++..-++.++.+|+ ++|.+|++++....+..+||.+.+.+.+.++.-|..+....++.+
T Consensus 340 ~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~ 419 (438)
T COG2270 340 GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL 419 (438)
T ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 777778888899999986 89999999999997 467899999999999999999999999988778888877777766
Q ss_pred HHHHHHhhhcccC
Q psy3157 374 VNFVYTYWVVTDV 386 (822)
Q Consensus 374 i~~ll~~~~~~e~ 386 (822)
+.+++ .+.+|.+
T Consensus 420 iGl~~-L~~v~~~ 431 (438)
T COG2270 420 IGLLL-LLRVKVP 431 (438)
T ss_pred hhHhh-EEeecCC
Confidence 66554 4445544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-08 Score=111.47 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
...++...+........|.|++..+|.+..+.+++.....++..++.+++|++.||+|||+++.++.++.++..++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 347 (471)
T PRK10504 268 AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV 347 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444445556667776789999999999999999988999999999999999999998888777776665553
Q ss_pred ---chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 296 ---KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 296 ---~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
.+.+.+.+..++.|++.+. .+....++.+.+|++ ++++|+.++...+|..+|+.++|.+.+..
T Consensus 348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 348 ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445566777888775 777788888888864 55689999999999999999999998765
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=114.38 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH---HHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCI---VSYLLL 292 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~---i~~ll~ 292 (822)
+..++..........++|.|+++..|.+..+.++..+++.++.+++.+++|+++||+|+++....+..+.. ++.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 337 (438)
T TIGR00712 258 IANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVY 337 (438)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHH
Confidence 33344444445566788889988789999999999999999999999999999999964332222222211 122222
Q ss_pred Hh--hchHHHHHHHHHHhhcccc-hhhHHHHHHHHhcccc--chHHHHHHHHHHHH-HHHHHHHHHHHHhcccchHHHHH
Q psy3157 293 GL--YKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDS--TKAFSQLMMVTFLG-FFIGPAIGGHVIHYENGFFYICC 366 (822)
Q Consensus 293 ~~--a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG-~~igp~l~g~l~~~~~gw~~~f~ 366 (822)
.. ..+.+..++..++.|++.. ..........|.+|++ ++++|+.+....+| .++||.+.|.+.+.. ||.+.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-g~~~~~~ 416 (438)
T TIGR00712 338 WMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFM 416 (438)
T ss_pred HhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-cchHHHH
Confidence 22 2244444444455555432 2223335677888874 45688888777776 578999999999987 8999999
Q ss_pred HHHHHHHHHHHHHhhhcccCC
Q psy3157 367 MTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 367 i~~~~~li~~ll~~~~~~e~~ 387 (822)
+.+++.+++.+..++..+|.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 417 VMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 888888777777777777654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-08 Score=111.63 Aligned_cols=141 Identities=20% Similarity=0.189 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH-H-H--hh
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL-L-G--LY 295 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll-~-~--~a 295 (822)
...........+.|.|+++.+|++..+.++....+.++..++.+++|+++||+|||++++++.++..+..++ . . ..
T Consensus 249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455566778888998878999999999999999999999999999999999999888765443332211 1 1 12
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHH-HHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQL-MMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~-~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
+++..+.+..++.|++.+. .+....++.|.+|++.| +.|+. +.+..++..++|.+.|++.+.. |+
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~ 397 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GD 397 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CC
Confidence 3444444445555666664 45566788999998655 45654 3344456778999999999886 64
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=116.59 Aligned_cols=153 Identities=18% Similarity=0.112 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh-------HHHHHHHHHHHHHHHHHHhhchH
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK-------TILLTCLFTCIVSYLLLGLYKSV 298 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr-------~~l~~~~ll~~i~~ll~~~a~s~ 298 (822)
.....++|.|+.+.+|++..+.+++.+++.++..++.+++|+++||+||| ....+..++.++..++.+..++.
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~ 348 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSL 348 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchH
Confidence 34455677888878899999999999999999999999999999999865 23333444444444444555666
Q ss_pred HHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy3157 299 YVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNF 376 (822)
Q Consensus 299 ~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ 376 (822)
+..++..++.+++.+. .+...+++.++.|+ ++.+.|+.+.+..+|..++|.+.+ .....+|+..|++.+++.+++.
T Consensus 349 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~ 426 (476)
T PLN00028 349 GAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACT 426 (476)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHH
Confidence 6555555666665543 34445555565553 344567665555555555554432 1122369999999988887776
Q ss_pred HHHh
Q psy3157 377 VYTY 380 (822)
Q Consensus 377 ll~~ 380 (822)
++.+
T Consensus 427 ~~~~ 430 (476)
T PLN00028 427 LPVA 430 (476)
T ss_pred HHHH
Confidence 6643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-08 Score=107.69 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHh
Q psy3157 230 PLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS-VYVIFFVRILL 308 (822)
Q Consensus 230 ~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s-~~~l~i~r~l~ 308 (822)
...|.+.++.+|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.+++.++..+.++ ++.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 56676777668999999999999999999999999999999999999999888888888777777764 88888889999
Q ss_pred hcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 309 GLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 309 Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
|++.+. .+...+++.|.+|++ +++.|+.+....+|..+||.++|.+.+..
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999886 778889999999875 45689999999999999999999998764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=108.57 Aligned_cols=158 Identities=14% Similarity=0.073 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH--h--hch
Q psy3157 222 LFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG--L--YKS 297 (822)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~--~--a~s 297 (822)
....+....++|.|+.+.+|.+..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+... . ..+
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS 335 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 444555677889999888899999999988888888889999999999999999988776554433332221 1 223
Q ss_pred HHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHH-HHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 298 VYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTF-LGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 298 ~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~-iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
....++...+.+++.+. .+....+++|++|++.| ++|+.+.... ++....|.+.+.+ +..+.|...+++.++..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~ 414 (432)
T PRK10406 336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV 414 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence 33222222223333333 45567888999998655 4677554444 3344577877855 444246666666665555
Q ss_pred HHHHHHh
Q psy3157 374 VNFVYTY 380 (822)
Q Consensus 374 i~~ll~~ 380 (822)
+.++..+
T Consensus 415 i~~~~~~ 421 (432)
T PRK10406 415 VAFLVSL 421 (432)
T ss_pred HHHHHHH
Confidence 5555433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=106.76 Aligned_cols=160 Identities=14% Similarity=0.042 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSL-LQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL- 294 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~- 294 (822)
..++..........+.+.|+.+ .|++..++|++.....+ ...++.+++|++.||+|+|+++.++.++.++..+....
T Consensus 216 ~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 294 (390)
T TIGR02718 216 LALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQ 294 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556677778876 79999999999888764 66677899999999999999988777665333322221
Q ss_pred -----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-c--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 295 -----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-S--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 295 -----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
..+...++...++.+++.|. .+...+.+.+..++ + ++.+++.+...++|..+||.++|.+.+.. ||+..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f 373 (390)
T TIGR02718 295 AAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGF 373 (390)
T ss_pred HHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHH
Confidence 12333344444555666665 56667777677654 4 45689999999999999999999999987 899999
Q ss_pred HHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVY 378 (822)
Q Consensus 366 ~i~~~~~li~~ll 378 (822)
++.+++.++..++
T Consensus 374 ~~~~~~~l~a~~~ 386 (390)
T TIGR02718 374 LSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-10 Score=133.11 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
++..++.....++....+. -+++.|+++.++.|++.+.+-++..+..++..++..|..|-+.+-+|.++.+++.+++++
T Consensus 9 ~~~~~~q~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 3344444344444444444 466779999999999999999999999999999999977777777899999999888755
Q ss_pred hc--------------------------------------------------hHHHHHHHHHHhhcccch-hhHHHHHHH
Q psy3157 295 YK--------------------------------------------------SVYVIFFVRILLGLFKHT-QVLCKAYIS 323 (822)
Q Consensus 295 a~--------------------------------------------------s~~~l~i~r~l~Gig~g~-~~~~~~~i~ 323 (822)
.+ -++.++++.++.|+|... ++...+|+=
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 034566788999999986 999999999
Q ss_pred Hhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHHHHh
Q psy3157 324 DICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE---------------------NGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 324 e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~---------------------~gw~~~f~i~~~~~li~~ll~~ 380 (822)
|.++++.- .+|++.....+|.++|-++++.++..+ +.|..-|.+.+++.++..+. +
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip-l 246 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP-L 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99987644 489999999999999999998876532 12444455666665555554 3
Q ss_pred hhcccCCC
Q psy3157 381 WVVTDVKK 388 (822)
Q Consensus 381 ~~~~e~~~ 388 (822)
+.+|+.-+
T Consensus 247 ~~FPk~lp 254 (539)
T PF03137_consen 247 FFFPKKLP 254 (539)
T ss_dssp --------
T ss_pred HcCCccCC
Confidence 44555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=103.66 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQ--VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~--~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+..++.......+..+++.|+.+. +|++..+.++..+.+..++++|.++.+++.||+|+|+++.++.++..++.++.
T Consensus 146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~ 225 (310)
T TIGR01272 146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA 225 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3444444445666777888899753 69999999999999999999999999999999999999888888877777666
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSA 370 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~ 370 (822)
...++...+ .+-++.|++.+. +|...+...+.+|+ .+++.++. ....+|.+++|++.|.+.+.. |.++.|++..+
T Consensus 226 ~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~ 302 (310)
T TIGR01272 226 ALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVP 302 (310)
T ss_pred HHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 555544333 345578888886 88888888888876 35666765 566789999999999999986 78888875444
Q ss_pred H
Q psy3157 371 L 371 (822)
Q Consensus 371 ~ 371 (822)
+
T Consensus 303 ~ 303 (310)
T TIGR01272 303 C 303 (310)
T ss_pred H
Confidence 3
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-08 Score=111.38 Aligned_cols=157 Identities=10% Similarity=0.050 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc--hH-H-HHHHHH
Q psy3157 230 PLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK--SV-Y-VIFFVR 305 (822)
Q Consensus 230 ~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~--s~-~-~l~i~r 305 (822)
.+.|.+.. ..|.+....++......++.+++.+++|+++||+|||++++.+.++.+++.++.+... +. . ...++.
T Consensus 292 ~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 292 YYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 34454444 5788877677777778888899999999999999999999999998888877765431 21 1 222233
Q ss_pred HHhhcccch--hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH------hcccchHHHHHHHHHHHHHH
Q psy3157 306 ILLGLFKHT--QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI------HYENGFFYICCMTSALFVVN 375 (822)
Q Consensus 306 ~l~Gig~g~--~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~------~~~~gw~~~f~i~~~~~li~ 375 (822)
++.+++.+. .+...++++|.+|++.| ++|+......+|.++++.+.+.+. +.. +|++.|++.+++.++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHH
Confidence 344444432 46678999999997555 578888888888888766655443 444 7888898888887777
Q ss_pred HHHHhhhcccCCC
Q psy3157 376 FVYTYWVVTDVKK 388 (822)
Q Consensus 376 ~ll~~~~~~e~~~ 388 (822)
+++.+++.||++.
T Consensus 450 ~~~~~~~~~e~~~ 462 (479)
T PRK10077 450 ALFMWKFVPETKG 462 (479)
T ss_pred HHHHHhccccCCC
Confidence 7776666776553
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-08 Score=124.57 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNF-TIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~-~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
.++...........++.|+.+.+|++.. ..|++.++..++.+++.+++|+++||+++++++.++.++.+++.++..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 241 LSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 3333344455566778888888999998 999999999999999999999999999999998888888888888888888
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFV 373 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~l 373 (822)
+++.++++.++.|++.+. .++..+++.+.+|++ ++++|+.++...+|.++++.+++.+.....++...|++.+.+.+
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 888888888999999886 677788999998874 55688889899999988888887775532255666666555544
Q ss_pred HHH
Q psy3157 374 VNF 376 (822)
Q Consensus 374 i~~ 376 (822)
+..
T Consensus 401 ~~~ 403 (1146)
T PRK08633 401 IGT 403 (1146)
T ss_pred HHH
Confidence 433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=107.66 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL- 294 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~- 294 (822)
+..++..........++|.|++..+|.+..+.|+......++..++.++.|++.||+|+|+++..+.++.+++.++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~ 345 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT 345 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555667788999889999999999999999999999999999999999999998888888777665543
Q ss_pred --hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3157 295 --YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIH 356 (822)
Q Consensus 295 --a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~ 356 (822)
.++.+..++..++.|+|.|. .++....+.+..|++ +++.++++....+|..+|+.++|.+.+
T Consensus 346 ~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 346 DFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566667778899999986 677777777878764 556888999999999999999888764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=107.26 Aligned_cols=138 Identities=12% Similarity=0.039 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l 307 (822)
+..++|.|+.+ .|.+..+.+.+.+...++..++.+++|+++||+|||+.+..+.++.++..++....++.....+..++
T Consensus 250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 45567777776 69999999999999999999999999999999999999988887766665544433221112222233
Q ss_pred hhc--cc-chhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 308 LGL--FK-HTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 308 ~Gi--g~-g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
.|+ +. +..+..+.++.|.+|++ ++++|+......+|..+||+++|++.+.. |+....++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~-g~~~~~~~ 392 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM-GLGAALTF 392 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc-cHHHHHHH
Confidence 333 22 22455667889999974 55688888888999999999999999887 66554333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-08 Score=110.41 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY- 295 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a- 295 (822)
..++............+.|.+..++ +....+++.++..++.+++.+++|+++||+|+|+++.++.++.+++.++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG 308 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444333333434443344 56677788888899999999999999999999999999988888877776664
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhcc-------cc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICV-------DS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-------~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
++.+.+++..++.|++.+. .+...++++|..+ +| ++.+|+++....+|..+|+.+.|.+.+..
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777778888888885 7777888888764 22 34588899999999999999999998764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-07 Score=103.74 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHh
Q psy3157 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILL 308 (822)
Q Consensus 229 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~ 308 (822)
..+++.++.+++|++..+.+++...+.++..++.++.|++.||.+++..+....+...+..++....++.+.+.+..++.
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 315 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW 315 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34443334446899999999999999999999999999999996544434433333444444445566777778888889
Q ss_pred hcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 309 GLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 309 Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
|++.+. .+...+++.+..|++ ++..++.....++|..+||.++|.+.+.. |++..++..+++.++..+.
T Consensus 316 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 316 GLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNI-GLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHH
Confidence 988876 666777888877753 56677777888999999999999999986 8888888877665554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=111.05 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH-HHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRT-QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTI-LLTCLFTCIVSYL 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~-l~~~~ll~~i~~l 290 (822)
......++.......+..++|.++++ ..+.+..+.++..+...++..++.+++|+++||++||+. +....++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 325 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL 325 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence 34445555555666777889999976 246788889999999999999999999999999997774 3344444444333
Q ss_pred HHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 291 LLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 291 l~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
+.....+....+++..+.++|... .+.......|.+|++.| ++|+.+....+|.+++|.+.|.+.+..++|++.+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 326 LASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 322232322222222223333322 33334445667777555 589999999999999999999999987569999887
Q ss_pred HHHHH
Q psy3157 368 TSALF 372 (822)
Q Consensus 368 ~~~~~ 372 (822)
.+++.
T Consensus 406 ~~~~~ 410 (412)
T TIGR02332 406 VAALL 410 (412)
T ss_pred HHHHH
Confidence 76644
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=123.75 Aligned_cols=165 Identities=8% Similarity=-0.083 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
+.+..++..+..+.+..++|.|+.+.+|.+....|++.+.+.++.+++.++.|+++++.++++.+.++.++.+++.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (1140)
T PRK06814 230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA 309 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH
Confidence 33444444455556667888899988999999999999999999999999999999988877766666555555554443
Q ss_pred hh--------------------chHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHH
Q psy3157 294 LY--------------------KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAI 350 (822)
Q Consensus 294 ~a--------------------~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l 350 (822)
+. .+.+.++++.++.|++.+. .++..+++.+.+|+ ++|++|+.++...+|..+|+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 310 FASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred hcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 32 6677778888889998886 77789999999987 5677999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 351 GGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 351 ~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
++.+.....++...+++.+++.++..++
T Consensus 390 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 390 LALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 9998754336777766666554444433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=102.80 Aligned_cols=145 Identities=16% Similarity=0.105 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hhh-chHHHHHHHHH
Q psy3157 232 VNNYLRTQVLLSNFTIGAIASTF-SLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL---GLY-KSVYVIFFVRI 306 (822)
Q Consensus 232 l~~~l~~~~g~s~~~~g~~~s~~-~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~---~~a-~s~~~l~i~r~ 306 (822)
.+.++.+++|++..+.+++.+.. .++.+++.+++|++.||+|+|+.+.++.++.++..+.. ++. ++.+.+++.-+
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 311 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG 311 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33456667899999999988665 45688999999999999999998877666655544333 333 45565555544
Q ss_pred H----hhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 307 L----LGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 307 l----~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+ .|++.+. .+....++.+.+|.+. .++++...++|..++++++|.+.+.. ||++.|.+.+++.++.+++.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQ--YALLSALASVGRVYVGPTSGYLVEAY-GWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence 4 3444443 4555666666666544 45666666788887778999999998 99999999888887765553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-08 Score=108.81 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHH-HHHHH-HHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-RKTI-LLTCL-FTCIVSY 289 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G-rr~~-l~~~~-ll~~i~~ 289 (822)
.+.+..++..........++|.|+.+.+|.+..+.+++.+...++..++.++.|+++||.+ +|+. +.... ....++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 299 (379)
T TIGR00881 220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL 299 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 3444555555555666778888888889999999999999999999999999999999864 3332 22221 1122222
Q ss_pred HHHHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy3157 290 LLLGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYI 364 (822)
Q Consensus 290 ll~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~ 364 (822)
..... ..+...+++..++.|++.+. .+....++.|.+|++ +++.|+++....+|..++|.+.|.+.+.. ||++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~ 378 (379)
T TIGR00881 300 LVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GWAGA 378 (379)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-ccccc
Confidence 22222 23455555666777765543 556677889999875 45689999999999999999999999987 88875
Q ss_pred H
Q psy3157 365 C 365 (822)
Q Consensus 365 f 365 (822)
|
T Consensus 379 f 379 (379)
T TIGR00881 379 F 379 (379)
T ss_pred C
Confidence 4
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-07 Score=104.66 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
++++.+++...++..+..++|.|.++.++ .........+..+...++.|++|+++||+|+|+++.++.++..++....
T Consensus 256 llslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~ 333 (462)
T PRK15034 256 LLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL 333 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 45555555554455455567777776553 2223333444567788899999999999999999998887766665432
Q ss_pred Hh-h-----chHHHHHHHHHH----hhcccchhhHHHHHHHHhccc----------------------c-chHHHHHHHH
Q psy3157 293 GL-Y-----KSVYVIFFVRIL----LGLFKHTQVLCKAYISDICVD----------------------S-TKAFSQLMMV 339 (822)
Q Consensus 293 ~~-a-----~s~~~l~i~r~l----~Gig~g~~~~~~~~i~e~~p~----------------------~-~ra~g~~~~~ 339 (822)
.. . .+++.+.+..+. .|+|.| ....++.+++|+ + +-..|+....
T Consensus 334 ~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng---svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~ 410 (462)
T PRK15034 334 FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG---STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI 410 (462)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcccch---HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence 22 1 245554444333 344444 334444454542 0 1137788888
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcc
Q psy3157 340 TFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 340 ~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~ 384 (822)
..+|+.+-|.+-|...+..+++...|++..+..+++.++.++..-
T Consensus 411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888889888888877768999999999998888887666543
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=113.20 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG--RKTILLTCLFTCIVSYL 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G--rr~~l~~~~ll~~i~~l 290 (822)
..++...+...+.....-.++.|.. ..+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 4555666666677777777888777 58999999999999999999999999999999988 56677789999999999
Q ss_pred HHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 291 LLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 291 l~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
.++++++++.+++..++.|++.|. ......++.|+++.+ .+++|+..++.+++.++||+++|.+.+..++|...|+.
T Consensus 381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 999999999999999999999997 555556888998753 67899999999999999999999999988669999999
Q ss_pred HHHHHHHHHHHH
Q psy3157 368 TSALFVVNFVYT 379 (822)
Q Consensus 368 ~~~~~li~~ll~ 379 (822)
+++..+++.++.
T Consensus 461 ~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 461 CGLCFLLSAVLL 472 (509)
T ss_pred cChHHHHHHHHH
Confidence 999988887663
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=107.85 Aligned_cols=168 Identities=12% Similarity=0.173 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH--------HHHHH--
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTI--------LLTCL-- 282 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~--------l~~~~-- 282 (822)
.+.+..+...........++|.|+.+.+|.+..+.|++.++..++..++.+++|+++||+++|+. +..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 344 (465)
T TIGR00894 265 AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG 344 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45556666666677777889999998899999999999999999999999999999999864421 11111
Q ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q psy3157 283 FTCIVSYLLLGL-YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYE- 358 (822)
Q Consensus 283 ll~~i~~ll~~~-a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~- 358 (822)
++.++..+.... ..+.+..+++.++.+.+.+. .+.......|..|+ .+.+.|+.+....+|+.++|.+.|.+.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~ 424 (465)
T TIGR00894 345 LGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS 424 (465)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC
Confidence 111111111222 23444444444555554443 44444555566665 344588889999999999999999887643
Q ss_pred -cchHHHHHHHHHHHHHHHHHHh
Q psy3157 359 -NGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 359 -~gw~~~f~i~~~~~li~~ll~~ 380 (822)
++|..+|++.+++.++..++..
T Consensus 425 ~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 425 KNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred chHHHHHHHHHHHHHHHHHHHee
Confidence 3589999998888877766543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=105.63 Aligned_cols=140 Identities=9% Similarity=0.084 Sum_probs=110.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHhhcccch-hhH
Q psy3157 240 VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-KSVYVIFFVRILLGLFKHT-QVL 317 (822)
Q Consensus 240 ~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-~s~~~l~i~r~l~Gig~g~-~~~ 317 (822)
.+.+....+++.+...+.....+++.|++.||+++|+.+.+++++.+++.+...++ ++++.+++..++.|+|.+. .+.
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~ 318 (395)
T PRK10054 239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG 318 (395)
T ss_pred cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777888888888878888999999999999999999988888887777664 5777777788899998876 677
Q ss_pred HHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Q psy3157 318 CKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYW 381 (822)
Q Consensus 318 ~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~ 381 (822)
..+++.+..|++ +++++..+ ...+|..+||.++|.+.+.. |....|++.+....+..++...
T Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-ChhhHHHHHHHHHHHHHHHHHh
Confidence 788899998874 44566544 55689999999999999998 8888888876666655555443
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.3e-08 Score=113.94 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
++++..+...+..+++...+.. +++.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++++++.+++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~Itt-iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITT-IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence 4556666666666665555554 677899999999999999999999999999999999888888889999999999988
Q ss_pred Hhhc-------------------h--------------------------------HH-HHHHHHHHhhcccch-hhHHH
Q psy3157 293 GLYK-------------------S--------------------------------VY-VIFFVRILLGLFKHT-QVLCK 319 (822)
Q Consensus 293 ~~a~-------------------s--------------------------------~~-~l~i~r~l~Gig~g~-~~~~~ 319 (822)
++.+ . ++ .++++.++.|+|... ++...
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 6620 0 22 455678999999986 89999
Q ss_pred HHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHHHHHH
Q psy3157 320 AYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE------------------NGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 320 ~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~------------------~gw~~~f~i~~~~~li~~ll~ 379 (822)
+|+=|...++ ...+|++.....+|.++|-++|+++...+ +-|..-|++.+++.++..+.
T Consensus 260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p- 338 (735)
T KOG3626|consen 260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP- 338 (735)
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-
Confidence 9999988764 34589999999999999999999987632 12555577777777766665
Q ss_pred hhhcccCCCC
Q psy3157 380 YWVVTDVKKY 389 (822)
Q Consensus 380 ~~~~~e~~~~ 389 (822)
++++|+..++
T Consensus 339 ~f~fPk~lp~ 348 (735)
T KOG3626|consen 339 LFFFPKELPK 348 (735)
T ss_pred HHhCcccCcc
Confidence 4556665543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=104.62 Aligned_cols=134 Identities=17% Similarity=0.223 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHH
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVY 299 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~ 299 (822)
+..........++| ++.+++|.+..+.+++.+...++..++.+++|+++||+|||+.+....+...+..++.....+.+
T Consensus 261 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
T TIGR00895 261 MLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPT 339 (398)
T ss_pred HHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 33344444555666 45556899999999999999999999999999999999999554444433333333333356777
Q ss_pred HHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 300 VIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHV 354 (822)
Q Consensus 300 ~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l 354 (822)
.+++..++.|++.+. .+...+++.|.+|++. +++|+......+|..+||+++|++
T Consensus 340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 777888899998885 7888999999999754 568889999999999999999876
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=93.68 Aligned_cols=169 Identities=17% Similarity=0.091 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
.+.+...+-....|++-...+ ++|++..+++.+....+...++.+++.|.++||+|||+..++.+++.+++++ +-..+
T Consensus 42 vY~La~~aDWLQGpY~Y~LY~-~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~ 119 (354)
T PF05631_consen 42 VYLLAMAADWLQGPYLYALYE-SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSS 119 (354)
T ss_pred HHHHHHHHHHhhcchhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhcc
Confidence 344444555566666654444 5999999999999999999999999999999999999999988888888875 44568
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHH-HHHhcccc---ch-H--HHHHH-HHHHHHHHHHHHHHHHHHhccc-chHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAY-ISDICVDS---TK-A--FSQLM-MVTFLGFFIGPAIGGHVIHYEN-GFFYICC 366 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~-i~e~~p~~---~r-a--~g~~~-~~~~iG~~igp~l~g~l~~~~~-gw~~~f~ 366 (822)
+++.++++|++.|++... +++.-++ +.|.-... .. . ++... ...++-.+++.+++.++.+..+ |-.++|.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~ 199 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFD 199 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHH
Confidence 899999999999999986 6666554 44543221 11 1 22222 1222333444455555555441 3467787
Q ss_pred HHHHHHHHHHHHHhhhcccCC
Q psy3157 367 MTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 367 i~~~~~li~~ll~~~~~~e~~ 387 (822)
...++.+++.+++...-+|+.
T Consensus 200 ~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 200 AAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHHHhcccccC
Confidence 777777766666544444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-07 Score=102.07 Aligned_cols=143 Identities=15% Similarity=0.044 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhc
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTCIVSYLLLGLYK 296 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~~i~~ll~~~a~ 296 (822)
.++..........++|.|+++ .|.+..+.+++.+...++.+++++++|+++||+ +||+++.++.++.+++.++..+..
T Consensus 206 ~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (355)
T TIGR00896 206 FGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445556778888875 799999999999999999999999999999999 566677777777777776666654
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-c--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-S--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFF 362 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~ 362 (822)
+...+. ..++.|++.|. .+...+.+.+..++ + ++..++.+....+|..+||.++|++.+..++|.
T Consensus 285 ~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 285 MHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred hhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 433222 45678888876 67666776665543 3 334777777788889999999999998874454
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-07 Score=103.87 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy3157 223 FAASLIVPLVNNYL-RTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301 (822)
Q Consensus 223 ~~~~~~~~~l~~~l-~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l 301 (822)
........+++.|+ ++.+|.++.+.++....+.++..++.+++|++.||+|+|+++..+.++.+++.++..+.++.+ .
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 350 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-G 350 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-H
Confidence 33333445666675 456899999999999999999999999999999999999999888877777666666655543 2
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHH
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG-FFYICCMTSALFVVNFV 377 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w~~~f~i~~~~~li~~l 377 (822)
++..++.|++.+. +|...+...+.++++ +.+.++..+ ..+|..++|++.|.+.+.. | -+..|++..+..++..+
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~-g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA-GNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHH
Confidence 4556778999986 899999999988764 455666653 4478888999999998876 6 78888765555544443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-08 Score=106.47 Aligned_cols=140 Identities=24% Similarity=0.329 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChHHHH-HHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRKTILL-TCLFTCIV 287 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr~~l~-~~~ll~~i 287 (822)
.++...+...+++..-..++++|+++ .|++....+.+..+.-+...+.+|+.|..+|| ||||+.++ .+.+..++
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence 34556666677788888888888886 89999888888888888889999999999995 89877666 55666677
Q ss_pred HHHHHHhhchHHHH------------HHHHHHhhc-----ccch-hhHHHHHHHHhccc--c-chHHHHHHHHHHHHHHH
Q psy3157 288 SYLLLGLYKSVYVI------------FFVRILLGL-----FKHT-QVLCKAYISDICVD--S-TKAFSQLMMVTFLGFFI 346 (822)
Q Consensus 288 ~~ll~~~a~s~~~l------------~i~r~l~Gi-----g~g~-~~~~~~~i~e~~p~--~-~ra~g~~~~~~~iG~~i 346 (822)
+.++.+++.++..+ .+..++.|+ +.-. ..++-++++|.... + .|+++.+..+.++|.++
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL 194 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee
Confidence 77777776544322 233344444 3333 77889999999843 3 34899999999999999
Q ss_pred HHHHHHH
Q psy3157 347 GPAIGGH 353 (822)
Q Consensus 347 gp~l~g~ 353 (822)
|..++++
T Consensus 195 GY~~g~y 201 (498)
T KOG0637|consen 195 GYALGSY 201 (498)
T ss_pred eeecccc
Confidence 9888874
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.9e-07 Score=100.42 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHh
Q psy3157 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILL 308 (822)
Q Consensus 229 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~ 308 (822)
...++.|+++.+|.+..+.|++.+...++.++++++.+++.||+++|+++..+.+ .++..++.++.++++..++..++.
T Consensus 225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344557777899999999999999999999999999999999999988877753 344444556667777777778889
Q ss_pred hcccch-hhHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 309 GLFKHT-QVLCKAYISDICVDS---TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 309 Gig~g~-~~~~~~~i~e~~p~~---~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
|++.+. .++..+.+.+..|++ +++.++.+....+|..++..+.+.+... |-+..+++.+...++.+.+.
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 998885 666777777776553 5578899999999999999999976444 66666665555544444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-07 Score=106.06 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=104.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHhhcccch-hh
Q psy3157 240 VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV--YVIFFVRILLGLFKHT-QV 316 (822)
Q Consensus 240 ~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~--~~l~i~r~l~Gig~g~-~~ 316 (822)
++.+.. +...+..+..+++.++.++++||+|||+++.++.++.+++.++..+.++. +..++..++.+++.+. ++
T Consensus 353 ~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (505)
T TIGR00898 353 LGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ 429 (505)
T ss_pred cCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 454433 33344556677888999999999999999999999888888877776543 4444555566666654 77
Q ss_pred HHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 317 LCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 317 ~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
....+.+|.+|++. +++|+.+....+|.+++|.+.+ +.+. ++...+++.+++.++..++ .+++||++.
T Consensus 430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~-~~~lpet~~ 499 (505)
T TIGR00898 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGIL-TLFLPETKG 499 (505)
T ss_pred HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHH-HHcCcCCCC
Confidence 78899999999754 5688899999999999999998 4443 5667777777777666555 456677654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-07 Score=99.09 Aligned_cols=141 Identities=14% Similarity=0.086 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----chH
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-----KSV 298 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-----~s~ 298 (822)
.........|.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.++..++.++..+. .+.
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSW 300 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 334445556777777899999999999999999999999999999999999999888877777766655543 234
Q ss_pred HHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHH-HHHHHHHHHHHHHhcccchHHHHH
Q psy3157 299 YVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFL-GFFIGPAIGGHVIHYENGFFYICC 366 (822)
Q Consensus 299 ~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~~~f~ 366 (822)
..+++..++.|++.+. .+.......|..|+ ++++.++.+..... |.+.+|.++ .+.+.. +|...++
T Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~-~~~~~~~ 369 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS-LIHGNT-AWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH-hccccC-hHHHHHH
Confidence 4455566778888775 67777888887775 46678887766544 566666554 443332 4444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-07 Score=105.22 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
....++..........++|.|+++.+|.+..+.|+......++..++.+++|++.||+|||+++.++.++.+++.++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455555667788888889999999999999999999999999999999999999999998888888777663
Q ss_pred ----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 295 ----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 295 ----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
..+++.+++..++.|+|.+. .++......+.+|++ +++.|+.+....+|..+|+.+.+.+.+.
T Consensus 341 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 341 TFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566677778889999886 666666777777864 4568999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=6e-07 Score=102.56 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=113.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----ChHHHHHHHHHHHHHHHHHHhh----chHHHHHH
Q psy3157 233 NNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-----RKTILLTCLFTCIVSYLLLGLY----KSVYVIFF 303 (822)
Q Consensus 233 ~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G-----rr~~l~~~~ll~~i~~ll~~~a----~s~~~l~i 303 (822)
..++++++|+++.+...+.+...++.. .-+++|.++|-+. ||+-++++.++.+++.+..+.. .+.....+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 346778899999999999888888875 4689999999763 5666667777776655555542 34566666
Q ss_pred HHHHhhcccch-hhHHHHHHHHhccc--cch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 304 VRILLGLFKHT-QVLCKAYISDICVD--STK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~~~i~e~~p~--~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
..++..+|... -.++-+++.|...+ +.+ ..+....+..+|.++|..++|.+.+.. ++++.|.+.+++.++..+.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHH
Confidence 66777777765 67778888888743 223 366677788899999999999999887 8999999888887777666
Q ss_pred Hhhhccc
Q psy3157 379 TYWVVTD 385 (822)
Q Consensus 379 ~~~~~~e 385 (822)
..++.+|
T Consensus 171 ~~~~~~e 177 (433)
T PF03092_consen 171 ALFLLEE 177 (433)
T ss_pred HHHhhhh
Confidence 5666655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=93.33 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~~i~~ll 291 (822)
-+.+...+....++....++|.++.+ .|+|..+.|++.+...+.....++....+++|. .+|+..+...+++.++.+.
T Consensus 212 ~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 212 QVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 45556777788888999999998886 799999999999999999999999999999975 4777777777788888777
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA---FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCM 367 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra---~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i 367 (822)
+.+.+....+.- .++.|+|.|. ++.+...+.+-.+.-+.+ .|+.+....+=..+||.+.|++-|..++|+...+.
T Consensus 291 ~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 291 LLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred HHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 777654322222 4899999885 999999999988654343 55555555555778999999999999899999988
Q ss_pred HHHHHHHHHHHHhhh
Q psy3157 368 TSALFVVNFVYTYWV 382 (822)
Q Consensus 368 ~~~~~li~~ll~~~~ 382 (822)
.+...+++.+..+..
T Consensus 370 l~~~~i~m~i~Gl~a 384 (395)
T COG2807 370 LALATLLMLIFGLRA 384 (395)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888777776665443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-07 Score=104.40 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
+..++...+........+.|+++.+|.+....++......++.+++.+++++++||+|+|+++.++.++.+++.++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444555556666678776655555555567788899999999999999999999998888877777664
Q ss_pred c--hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 296 K--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS---------TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 296 ~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~---------~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+ +++.+++..++.|+|.+. .+...++.+|..|.. +..+|++++...+|..+|+.+.+.+++..
T Consensus 315 ~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 315 SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 566677778888999885 777788888887632 33478889999999999999999887653
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-06 Score=98.36 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l 307 (822)
.....|.++.+++|.+..+.+++.+...++.+++.++.|++.||+|||+++.++.++..++.++..+.++.+..++..++
T Consensus 222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (392)
T PRK10473 222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITL 301 (392)
T ss_pred HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777789999999999999999999999999999999999999999988888888877776655544444444
Q ss_pred hhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy3157 308 LGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALF 372 (822)
Q Consensus 308 ~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~ 372 (822)
.++|.+. .+. ....+..|.+.| .|......+++..+|+.+++++.+.. |+.....+.+.+.
T Consensus 302 ~~~g~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~ 363 (392)
T PRK10473 302 ICAGFSVGFGV--AMSQALGPFSLR-AGVASSTLGIAQVCGSSLWIWLAAVL-GISAWNMLIGILI 363 (392)
T ss_pred HHHHHHHHhHH--HHHHHhccCccc-ccHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence 4444432 222 222334443333 24445556677788888888887766 6665444444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-07 Score=100.76 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy3157 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD-LYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307 (822)
Q Consensus 229 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD-r~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l 307 (822)
...+|.|+++..+ +..+.+++.++..++..++..+.+++.| |++.++.+..+.++.+++.++.+++++++.+++..++
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4456777776444 6788888888887777666666666665 5666677778888888888777788888777777788
Q ss_pred hhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-hHHHHHHHHHHHHHHHHH
Q psy3157 308 LGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYEN--G-FFYICCMTSALFVVNFVY 378 (822)
Q Consensus 308 ~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~--g-w~~~f~i~~~~~li~~ll 378 (822)
.|++.+. .+...+++.+..|++ ++++|+.+....+|..+||.++|++.+..+ + ....+++.+++.++..+.
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 8888775 677789999999864 566899999999999999999999998742 2 344555555555544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=106.31 Aligned_cols=135 Identities=12% Similarity=0.029 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHhhc-ccchhhHHHHHHHHhcc
Q psy3157 253 TFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK----SVYVIFFVRILLGL-FKHTQVLCKAYISDICV 327 (822)
Q Consensus 253 ~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~----s~~~l~i~r~l~Gi-g~g~~~~~~~~i~e~~p 327 (822)
+..++.+++.+++++++||+|||++++++.++.+++.++.++.. +...+.+..+...+ +.+..+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 34456667888999999999999999888877776665555432 11111211111122 22335566778899999
Q ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 328 DSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE---------NGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 328 ~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~---------~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
.+.| ++|+.+....+|.+++|.+.+.+.+.. .++...|++.+++.++..+. .+++||++.
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~ 493 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKG 493 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence 8655 588899999999999999999988742 13456777777777766554 466788664
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-07 Score=101.20 Aligned_cols=152 Identities=15% Similarity=0.167 Sum_probs=108.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc---hHH------HHHHHHHHh
Q psy3157 238 TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK---SVY------VIFFVRILL 308 (822)
Q Consensus 238 ~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~---s~~------~l~i~r~l~ 308 (822)
..-|++..+.-++.....+...+..+.+.++.||+|||+.++++..++.+..+++.... +.. ..+++.++.
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999998888887766532 111 122333333
Q ss_pred --hcccchhhHHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcc
Q psy3157 309 --GLFKHTQVLCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 309 --Gig~g~~~~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~ 384 (822)
+++.|.-|..+-+.+|.+|+..|. +++..+...++..+-...--.+.+.. |- +.|....+.+++..+..+..+|
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-GP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 334455788899999999987774 44444444444443333333333444 32 6777778888888888899999
Q ss_pred cCCCCcc
Q psy3157 385 DVKKYPT 391 (822)
Q Consensus 385 e~~~~~~ 391 (822)
|++.+..
T Consensus 456 ETkgr~~ 462 (485)
T KOG0569|consen 456 ETKGRTP 462 (485)
T ss_pred ccCCCCH
Confidence 9986543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-06 Score=95.07 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy3157 225 ASLIVPLVNNYLRTQVL---LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g---~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l 301 (822)
+..+-..++.|....++ .+....|.+.++..+.-++.-.+..++.+|+|.|+.++++..+.++=.+.++++++.+.+
T Consensus 236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i 315 (412)
T PF01306_consen 236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVI 315 (412)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34444456667765443 234568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFV 377 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~l 377 (822)
.+.+.+.|+-.+. .....-++++.+|+|-.+ ..+ .+.+.++|.++.+.++|.+.+.. |.+.+|++.+.+.++..+
T Consensus 316 ~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 316 SLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHH
Confidence 9999999999986 788899999999988654 444 45778999999999999999998 999999999999888888
Q ss_pred HHhhhcccCCCC
Q psy3157 378 YTYWVVTDVKKY 389 (822)
Q Consensus 378 l~~~~~~e~~~~ 389 (822)
+..+.+++.++.
T Consensus 395 i~~f~l~~~~~~ 406 (412)
T PF01306_consen 395 ISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHS--SSST
T ss_pred HheeeecCCCcc
Confidence 877777765543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-06 Score=95.60 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---hHHHH-HHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR---KTILL-TCLFTCIVS 288 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr---r~~l~-~~~ll~~i~ 288 (822)
.+....++.......+..++|.|+++ .|.+.. .+...++..+...++ .++++||..| |+... ...++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 196 IIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 45556666666677778899999975 678764 566555555554444 4677777654 34333 234444444
Q ss_pred HHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy3157 289 YLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 289 ~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f 365 (822)
.++.++..+....++..++.|++... ++...++.+|.+|++ ++++|+.+....+|.+++|++.+.+.. +....|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f 347 (368)
T TIGR00903 271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYF 347 (368)
T ss_pred HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHH
Confidence 44445555554555555666776654 677889999999985 456899999999999999999988773 666778
Q ss_pred HHHHHHHHHHHHHH
Q psy3157 366 CMTSALFVVNFVYT 379 (822)
Q Consensus 366 ~i~~~~~li~~ll~ 379 (822)
.+.+++.++..+..
T Consensus 348 ~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 348 TFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=100.14 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+....++...+........+.|.+..+|.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++.
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 3444555555666666666666777667766 567788888999999999999999999999999999999999999988
Q ss_pred Hhhc--hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-------c--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 293 GLYK--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-------S--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 293 ~~a~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-------~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
.+.. +.+.+++..++.|++.+. .....++++|..+. | +..+|+.+....+|..+++.+.+.+++..
T Consensus 308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 8875 999999999999999986 77888999998863 1 12378888888999999999999887653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-06 Score=92.78 Aligned_cols=170 Identities=21% Similarity=0.187 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVL-LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g-~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
.+..++..........+.+.|+++ .| .+....+.+.++..++-++.-.+.+++..|+|.|+++.++.+.+++=..+.+
T Consensus 213 ll~~~l~~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 213 LLAAFLIGISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777778888887 55 7777888888888888889989999999999999999999999988887877
Q ss_pred hh-chHHHHHHH----HHHhhcccch-hhHHHHHHHHhccccch--HHHHHHH-HHHHHHHHHHHHHHHHHhccc-----
Q psy3157 294 LY-KSVYVIFFV----RILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMM-VTFLGFFIGPAIGGHVIHYEN----- 359 (822)
Q Consensus 294 ~a-~s~~~l~i~----r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~-~~~iG~~igp~l~g~l~~~~~----- 359 (822)
.. ++.+..++. ..+.|+..|. ......++.+.+|++.| +.+++.. ..++|.++|..++|++.+..+
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 76 555444333 3468988886 78889999999998654 5787665 568999999999999999761
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 360 GFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 360 gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
.|...+.+.+++.++..++.+++.++
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 24455666666666666555555544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=90.06 Aligned_cols=134 Identities=10% Similarity=-0.053 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hh-h
Q psy3157 220 LDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL---GL-Y 295 (822)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~---~~-a 295 (822)
+...+.....+..|.++.+.+|.+..+.|++.+...++..++.++.|++.||+|||+++.++.++..+..+.. .. .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD 284 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344445555666777789999999999999999999999999999999999999888776544433222 22 2
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHH-HHHHHHHHHHHHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMM-VTFLGFFIGPAIGGH 353 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~-~~~iG~~igp~l~g~ 353 (822)
.+.+.+.++.++.+.+.+. ......++.|..|+ ++++.++.+. ...+|..+|+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2444444444444444443 44555667777664 4566666544 345677777766543
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-06 Score=86.59 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFT-CIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll-~~i~~ll 291 (822)
++..++++......-+...-|.++++.+|+|+...+.+.+......++..++.|.++|++|++...+.+..+ ..++-..
T Consensus 268 ~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~ 347 (459)
T KOG4686|consen 268 VLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG 347 (459)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh
Confidence 555566666666666666777788999999999999999999898999999999999999999877755433 3333333
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
..+ +++.=++...+.|+.... ....+..++-+.|++ +.++|..+...++|..+-|+++|++.+..+++-+
T Consensus 348 l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 348 LFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred HHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 333 223334455667776654 334566677777775 5578999999999999999999999987644444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=86.99 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHh-cCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy3157 228 IVPLVNNYLRTQ-VLLSNFTIG-AIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVR 305 (822)
Q Consensus 228 ~~~~l~~~l~~~-~g~s~~~~g-~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r 305 (822)
.-|++..|+.+. .|++..++. -+.-+..-.+++..++...+.|..|.|++++++.+...+..++..+.++...+-+.-
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 457777788775 899988875 445556666777888999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhh
Q psy3157 306 ILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE-NGFFYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 306 ~l~Gig~g~~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~-~gw~~~f~i~~~~~li~~ll~~~~ 382 (822)
++.|++.++-.+..+++--..|++ +|+.+....+.-+|-.+|.++|..+.... .+++...++......+++++ .++
T Consensus 102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~f 180 (412)
T PF01770_consen 102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-ALF 180 (412)
T ss_pred HHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHH
Confidence 999999988777778887777763 67888888899999999999998887743 24555656555444444444 466
Q ss_pred cccCCC
Q psy3157 383 VTDVKK 388 (822)
Q Consensus 383 ~~e~~~ 388 (822)
+|..++
T Consensus 181 LP~~~~ 186 (412)
T PF01770_consen 181 LPMPKR 186 (412)
T ss_pred cCCCCc
Confidence 676543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=100.82 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG--RKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G--rr~~l~~~~ll~~i~~ll 291 (822)
+.+.....+.+.++.-|.++.++.+.+..+..++|....-..+.+.++..+.|.++||++ |-.....+++..++....
T Consensus 275 ~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~ 354 (464)
T KOG3764|consen 275 IAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGP 354 (464)
T ss_pred hhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhch
Confidence 344445556777888899999888888877779999998999999999999999999999 644555777778888888
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc---c-----chHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD---S-----TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFF 362 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~---~-----~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~ 362 (822)
..+++++..+++-++..|++.+. .......+...++. . +-.+++...++.+|..+||.++|.+.+.. |++
T Consensus 355 iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-GF~ 433 (464)
T KOG3764|consen 355 IPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-GFE 433 (464)
T ss_pred hHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh-hHH
Confidence 88999999999988888888763 33333344444433 2 22478899999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3157 363 YICCMTSALFVVNFVYT 379 (822)
Q Consensus 363 ~~f~i~~~~~li~~ll~ 379 (822)
|...+.++..++...+.
T Consensus 434 wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 434 WLMTIIGILNLIYAPVL 450 (464)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888887776553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-06 Score=93.09 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFS-LLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~-l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~ 294 (822)
+..++...........++.|+.+ +|++..+.+.+.++.. ++.+++.+++|+++||+|||+.+.++.++.++...+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566667788888877 8999999998887665 577899999999999999999988888877776665544
Q ss_pred h-----------chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHH
Q psy3157 295 Y-----------KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVT 340 (822)
Q Consensus 295 a-----------~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~ 340 (822)
. ++.+.++.+.++.+++.+. .+...+++.|.+|++.| .+|+++...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 295 LASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 2 3456677778888999885 88999999999998655 577766554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=89.49 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hh--hchHHHH
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL---GL--YKSVYVI 301 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~---~~--a~s~~~l 301 (822)
....+.|.++++ +|.+..+.|+......++..++..+.+++.||+|+|+.+....+..+++.+.. .. .++++.+
T Consensus 221 ~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (401)
T PRK11043 221 AWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPL 299 (401)
T ss_pred HHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 334456666654 89999999998888888999999999999999999887655544444433322 12 3455555
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
++...+.|++.+. ++...+...+..|+ ++++.|+++.....+..+++.+.|.+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 300 LIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5666777777775 77777777777765 67889999988888888888888888764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.3e-06 Score=92.29 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQ-VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~-~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
..++..........+++.|..+. .+.+....+...+.+..+..+|.+++|+++||+++|+++.++.++.++..++..+.
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~ 319 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA 319 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444567777777652 24455555556666778889999999999999999999999888888888888887
Q ss_pred chHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHH
Q psy3157 296 KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYE-----NGFFYICCMTS 369 (822)
Q Consensus 296 ~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~-----~gw~~~f~i~~ 369 (822)
++... .++.++.|++.+. +|...+...+..+++.+..+.......+|++++|++.|++.|.. ++.+..|++..
T Consensus 320 ~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 320 GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 77554 4555677777765 89999999999988655322222333499999999999999943 24677777654
Q ss_pred HHHHH
Q psy3157 370 ALFVV 374 (822)
Q Consensus 370 ~~~li 374 (822)
++.+.
T Consensus 399 ~~~~~ 403 (410)
T TIGR00885 399 LCFAV 403 (410)
T ss_pred HHHHH
Confidence 44433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=98.83 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--------hHHHH-HH
Q psy3157 211 PHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR--------KTILL-TC 281 (822)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr--------r~~l~-~~ 281 (822)
.+.+.+..+....+...+..++|.|+++.+|++..+.|++.++..+.+.+..+++|.++||.-+ |+++. ++
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 3467778888999999999999999999999999999999999999999999999999998754 23333 55
Q ss_pred HHHHHHHHHHHHhhch--H-HHHHHHHHHhhcccchhhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 282 LFTCIVSYLLLGLYKS--V-YVIFFVRILLGLFKHTQVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 282 ~ll~~i~~ll~~~a~s--~-~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
....+++.+..++.++ . ..+++.-+..++.....+....-..|..|+. +-.+|+.+....+.+.++|.+.|.+...
T Consensus 340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~ 419 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD 419 (466)
T ss_pred HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC
Confidence 6666666666666542 2 2222221212221111222233333334543 4468999999999999999999999842
Q ss_pred --ccchHHHHHHHHHHHHHHHHHHhhh
Q psy3157 358 --ENGFFYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 358 --~~gw~~~f~i~~~~~li~~ll~~~~ 382 (822)
...|+++|++.+++.++..++..++
T Consensus 420 ~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 420 NTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 2489999999999988887653333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-05 Score=84.24 Aligned_cols=151 Identities=25% Similarity=0.357 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhch--H
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSN--FTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS--V 298 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~--~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s--~ 298 (822)
.......+..+.+..+ ++.+. ...++..+.+.++..++.+++|.++||+|||+.+..+.....++.++..+..+ .
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 4444455555554444 45454 57899999999999999999999999999998888887765666666666665 8
Q ss_pred HHHHHHHHHhhcccch-hhHHHHHHHHhccc---cchHHHHHHH-HHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Q psy3157 299 YVIFFVRILLGLFKHT-QVLCKAYISDICVD---STKAFSQLMM-VTFLGFFIGPAIGGHVIHY-ENGFFYICCMTSALF 372 (822)
Q Consensus 299 ~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~---~~ra~g~~~~-~~~iG~~igp~l~g~l~~~-~~gw~~~f~i~~~~~ 372 (822)
+.+++.|++.|++.+. .+...+++.+++|+ +....+.... ...+|.+++|.+++.+... ..+|++.|.+.....
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8899999999999986 88899999999986 3334666666 5778888998888777654 237888666655554
Q ss_pred HH
Q psy3157 373 VV 374 (822)
Q Consensus 373 li 374 (822)
..
T Consensus 175 ~~ 176 (338)
T COG0477 175 LL 176 (338)
T ss_pred HH
Confidence 43
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-06 Score=91.36 Aligned_cols=130 Identities=27% Similarity=0.321 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--
Q psy3157 219 FLDLFAASLIVPLVNNYLRTQVLLS-NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-- 295 (822)
Q Consensus 219 ~~~~~~~~~~~~~l~~~l~~~~g~s-~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-- 295 (822)
+...........++|.|+.+.+|.+ ..+.+++.++..++..++.++.|+++||+|+|+...+......+..+...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF 295 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455557777887777789999 8999999999999999999999999999999888777776666666665543
Q ss_pred -chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHH
Q psy3157 296 -KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGP 348 (822)
Q Consensus 296 -~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp 348 (822)
.+....++..++.|++.+. .+...+++.+.+|++ +++.|+.+...++|..+||
T Consensus 296 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3557777788889998886 888899999999875 4568999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-05 Score=79.47 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-------chH
Q psy3157 226 SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-------KSV 298 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-------~s~ 298 (822)
.+..+.....+++.+|+|.++...+.....+|..+ +++.|.+.|++|++.++.+|.+...++..+...+ .++
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 33444444567778999999999999999999876 5889999999999999999999999988887663 367
Q ss_pred HHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 299 YVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 299 ~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
|.+++..++.|.+.+. .........+.||. |+.+.|+.-...++++.+-..+...+...
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 7887777877777664 45555556677885 66678988888888776665555555444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=91.45 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 244 NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 244 ~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
....+.+.....++.+++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+. .+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677888889999999999999999998887766554433222 35677778888899999886 788889
Q ss_pred HHHHhccc----cc-h----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 321 YISDICVD----ST-K----AFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 321 ~i~e~~p~----~~-r----a~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+++|..+. .+ | .+|....+..+|..+|+.++|.+++..
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998752 11 1 367788888999999999999998754
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.1e-06 Score=94.18 Aligned_cols=141 Identities=17% Similarity=0.089 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh--
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL-- 294 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~-- 294 (822)
..++............+.|.+. ..-+....+++.++..++.+++.+++++++||+|+|+++.++.++.+++.+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~y-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 317 (473)
T PRK10429 239 MALAYNIASNIINGFAIYYFTY-VIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG 317 (473)
T ss_pred HHHHHHHHHHHHhhheeeEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444433332 3335566777777777889999999999999999999998888776655554432
Q ss_pred ---hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-----cch----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 295 ---YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-----STK----AFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 295 ---a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-----~~r----a~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
..+.+.+++..++.|++.+. .+...++++|..+. ..| .+|...+..-+|..+|+.+.|++++..
T Consensus 318 ~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 318 LAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777888888875 77778899988652 122 477788888899999999999988643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-05 Score=85.67 Aligned_cols=133 Identities=9% Similarity=-0.047 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH-HHHHHHHHHHh--hchHHHH
Q psy3157 225 ASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLF-TCIVSYLLLGL--YKSVYVI 301 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~l-l~~i~~ll~~~--a~s~~~l 301 (822)
........+.++++.+|.+..+.+++.....++..++.++.+++.||++++........ +..+....... ..+.+.+
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTL 302 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444455667777789999999999999999999999999999999984333322222 22222222222 2355667
Q ss_pred HHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 302 FFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 302 ~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
++..++.|++.+. .+...++..+.+|+ ++.+.++.+....+|..+|+.+++.+...
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 303 LVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7778888888886 78888888888875 45568888888899999999999988655
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-05 Score=89.50 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHHHHHH----HHhh-hCChHHH--HHHHHHHHHHHH
Q psy3157 222 LFAASLIVPLVNNYLRTQVLLSNFT----IGAIASTFSLLQIISAPTVGY----LSDL-YGRKTIL--LTCLFTCIVSYL 290 (822)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~~g~s~~~----~g~~~s~~~l~~~ig~~~~G~----LsDr-~Grr~~l--~~~~ll~~i~~l 290 (822)
...+....+.++.+..+..+.+... .+++.++..+..++.+++..+ +.+| .+.+... .+|+++.+++.+
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~ 364 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFL 364 (475)
T ss_pred HHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3444444555666665544443222 568888888888888877554 4444 2333433 678888888877
Q ss_pred HHHh---------hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 291 LLGL---------YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 291 l~~~---------a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
..++ ..|++++++..++.|+|+.. .|...+++.+..|+ |++.+|++.....+|..+|+.++.......
T Consensus 365 ~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~ 444 (475)
T TIGR00924 365 TFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ 444 (475)
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7664 46899999999999999986 89999999999997 456699999999999999998888776654
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhcc
Q psy3157 359 NGFFYICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 359 ~gw~~~f~i~~~~~li~~ll~~~~~~ 384 (822)
+|.+.|...+++.++..++.++..|
T Consensus 445 -~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 445 -GVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888777776666544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=89.92 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccc-hhhHHHHHHHHhccccchH
Q psy3157 254 FSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDSTKA 332 (822)
Q Consensus 254 ~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g-~~~~~~~~i~e~~p~~~ra 332 (822)
..+..+-|.++.+++.||+|||+.+..++++++++.++...+.+-....+..+..-++.. ++.+++.|..|++|...|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 345556788899999999999999999999999999988876543333222233333332 3556677888999987665
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Q psy3157 333 --FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 333 --~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~ 382 (822)
.|....+.-+|+++.|+++ ...+. +-.....+.+.+++++.++..++
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheee
Confidence 6778888899999999999 44333 23334455566666666654333
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=92.54 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
..+..++.+.+.+.+..++--++++ .+-.....|........+-++.-++.+++..++|+-+++.+++.+..+=.+...
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 4455666666677777776555654 677777778778888888888999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH--HHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQLM-MVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~~~-~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+.+|+|+.+..-+++|+..+. +....+|++...||+.|+ .+++. ...++|-.+|.+|||.+..++ |-|..|.+.+
T Consensus 455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~g 533 (618)
T KOG3762|consen 455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFG 533 (618)
T ss_pred HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHH
Confidence 999999999999999999996 999999999999997664 55544 456889999999999999998 8888888888
Q ss_pred HHHHHHHHH
Q psy3157 370 ALFVVNFVY 378 (822)
Q Consensus 370 ~~~li~~ll 378 (822)
+.+++.+++
T Consensus 534 iAcl~~l~~ 542 (618)
T KOG3762|consen 534 IACLVTLAL 542 (618)
T ss_pred HHHHHHHHH
Confidence 877766655
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=92.00 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhhch--------HH
Q psy3157 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCIVSYLLLGLYKS--------VY 299 (822)
Q Consensus 229 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~i~~ll~~~a~s--------~~ 299 (822)
...+..|+.+.+|++......+...+....-+.++++|+++|+ +||++++.++.++..++.++.++... ..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 4445567777799999988888888888888899999999996 69999999999998888888776421 23
Q ss_pred HHHHHHHHhhcccch-hhHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHH
Q psy3157 300 VIFFVRILLGLFKHT-QVLCKAYISDICVDS-----TKAFSQLMMVTFLGFFIGPAIGGHVIHYE------NGFFYICCM 367 (822)
Q Consensus 300 ~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-----~ra~g~~~~~~~iG~~igp~l~g~l~~~~------~gw~~~f~i 367 (822)
..+++.++.++|.|. -+...+...|.++++ .+.+.++..+.++|..+++++.+++.+.. .+|.+.|.+
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 355666777777775 678888999988642 22478888899999999999998887432 269999999
Q ss_pred HHHHHHHHHHHHhh
Q psy3157 368 TSALFVVNFVYTYW 381 (822)
Q Consensus 368 ~~~~~li~~ll~~~ 381 (822)
.+++.++++++...
T Consensus 167 ~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 167 PAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877766433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.1e-05 Score=81.81 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.-.+..|+....-..+..+++.|+.+..|.+..+.+...+.+..+.++|..++.++..|+...+.+.+..++..+.++..
T Consensus 240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~ 319 (422)
T COG0738 240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV 319 (422)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777788889999988789999999999999999999999999999999999999998888888888888
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
+++++...++. -++.|++.+. +|...+...+..|++....|..-....+|+++-|.+.|++.|.. |-...+.....+
T Consensus 320 ~l~~g~v~~~~-l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGAiiP~l~G~i~d~~-g~~~~~~~~pll 397 (422)
T COG0738 320 ALIGGVVALYA-LFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQGVIADMF-GIQLTFLIVPLL 397 (422)
T ss_pred HHhcChHHHHH-HHHHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecchHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 88888665554 4667888886 99999999999996555555555667789999999999999987 766666644444
Q ss_pred HHHH
Q psy3157 372 FVVN 375 (822)
Q Consensus 372 ~li~ 375 (822)
+.+.
T Consensus 398 c~ly 401 (422)
T COG0738 398 CYLY 401 (422)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=87.57 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh--h
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL--Y 295 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~--a 295 (822)
.++..........+++.|+++.+|.+..+.+++.++..++.+++.+++|+++||+|+|+.+..+.....++..+..+ .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 313 (366)
T TIGR00886 234 YSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC
Confidence 33333344455667778888889999999999999999999999999999999999988877776665555554443 2
Q ss_pred c--hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHH
Q psy3157 296 K--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLG 343 (822)
Q Consensus 296 ~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG 343 (822)
. +.+.+++...+.+++.|. .....+++.+.+|+ +++++|+.+...++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred CcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence 2 555544444445455453 45556667777774 455678777665554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.1e-05 Score=85.08 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
.+...++...+..+.......|.+..+|.+.....+.......+.+++.+++.++++|+|+|+++.++.++.+++.++..
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~ 320 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY 320 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556566666566555677777777788888888888899999999999999999999999999999888
Q ss_pred hhc--hHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-----cch----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 294 LYK--SVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-----STK----AFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 294 ~a~--s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-----~~r----a~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+.+ +.+.+++..++.++|.+. .+..+++++|..+- ..| ..|.+.+..=+|.+++..+.|+++...
T Consensus 321 f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 321 FTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred hhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 865 788888889999999986 77888888888752 123 266677777788888888888877643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=81.52 Aligned_cols=155 Identities=10% Similarity=-0.080 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH-----
Q psy3157 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG----- 293 (822)
Q Consensus 219 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~----- 293 (822)
++............|.++++.+|.+..+.++.......+..++..+.+++.++.++++.+.....+..++.++..
T Consensus 228 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~ 307 (413)
T PRK15403 228 SLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL 307 (413)
T ss_pred HHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555667788888899999999998888888888888888876554443433222222222222221
Q ss_pred hhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy3157 294 LYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICV-DSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSAL 371 (822)
Q Consensus 294 ~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~ 371 (822)
..++++.+++..++.|+|.+. .+......-.-.+ +++++.++++.....+..+++.+++++... +-++.|...+++
T Consensus 308 ~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 385 (413)
T PRK15403 308 WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVV 385 (413)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHH
Confidence 123444456677888888875 5555432221111 367888888888888899999999988776 445555555544
Q ss_pred HHHH
Q psy3157 372 FVVN 375 (822)
Q Consensus 372 ~li~ 375 (822)
..+.
T Consensus 386 ~~~~ 389 (413)
T PRK15403 386 AGVI 389 (413)
T ss_pred HHHH
Confidence 4433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=64.88 Aligned_cols=70 Identities=23% Similarity=0.478 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFT 284 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll 284 (822)
+...+++...+.+...|+++.|+++ .|++..++|.+.++..+...++++++|+++||+|+++.++....+
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 4456777777888999999999986 899999999999999999999999999999999999887765544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0004 Score=80.24 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 244 NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK--SVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 244 ~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~--s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
....+++.+.+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+ +.+.+++.-++.|++.+. .+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999999999999999987755554444333333322 233445555667777664 555567
Q ss_pred HHHHhccc-----cch--H--HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 321 YISDICVD-----STK--A--FSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 321 ~i~e~~p~-----~~r--a--~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
+++|..+. ..| + ++.......+|..+|+.++|.+++.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776651 122 2 4556677888999999999988765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00031 Score=80.71 Aligned_cols=177 Identities=11% Similarity=-0.048 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH------HH----HHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHH
Q psy3157 212 HKISFICFLDLFAASLIVPLVNNYLRT-QVLLSN------FT----IGAIASTFSLLQIISAPTVGYLSDLYGR-KTILL 279 (822)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~s~------~~----~g~~~s~~~l~~~ig~~~~G~LsDr~Gr-r~~l~ 279 (822)
+.++...++.-++...+.-+...|+.+ .|+-++ .+ ..|....+.+...+.+++.-++++++|+ |.+..
T Consensus 261 ~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~ 340 (477)
T TIGR01301 261 WILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWG 340 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 356677777777776666666666654 344221 11 2244555666666777888899999995 77778
Q ss_pred HHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHhhcccch-hhHHHHHHHHhccccc----hHH
Q psy3157 280 TCLFTCIVSYLLLGLYKS---------------------VYVIFFVRILLGLFKHT-QVLCKAYISDICVDST----KAF 333 (822)
Q Consensus 280 ~~~ll~~i~~ll~~~a~s---------------------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~----ra~ 333 (822)
++.++.+++.+...+.++ .+..++...+.|+..+. ...-++++++..++++ -.+
T Consensus 341 ~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~m 420 (477)
T TIGR01301 341 IVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSM 420 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchh
Confidence 898888888777765443 36666777888888876 7888999999988532 248
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 334 SQLMMVTFLGFFIGPAIGGHVIHYEN-GFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 334 g~~~~~~~iG~~igp~l~g~l~~~~~-gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
|+++.+..+.+++..+..|.+.+..+ +-.+++.+.++..+++.++.++.+|++++
T Consensus 421 gilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 421 GVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999988888665542 46778888888899999988888987664
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=92.75 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--eccc-CccchhHHHHHHHHHHH
Q psy3157 587 YWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSR-NSYSSLYYSFILLTVSI 663 (822)
Q Consensus 587 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~-~~~~~l~~~~~l~~~~~ 663 (822)
++..+...+.-.++.+.+..+++.|+++.+|++..+++.+.+...+...++.++.| .|+. ++++.+..+.++..++.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ 90 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 35556666667777778888899999998999999999888888888888888888 5555 77777777777777776
Q ss_pred HHHHhhhH-HHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchh
Q psy3157 664 LALYVSVN-LYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQ 742 (822)
Q Consensus 664 ~~l~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (822)
+++..... .....+.+.... ++.+..+|.- .. . +++
T Consensus 91 lll~~~~~~~~~~~l~l~li~-iG~G~~~~~~-------------~a-----------------l------------v~e 127 (493)
T PRK15462 91 VVLGASEIHPSFLYLSLAIIV-CGYGLFKSNV-------------SC-----------------L------------LGE 127 (493)
T ss_pred HHHHHhhcchhHHHHHHHHHH-HhcccccccH-------------HH-----------------H------------HHH
Confidence 55543221 111111111110 1111000000 00 0 011
Q ss_pred hhhhhcccCc-cccchhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 743 IFAIQKCQGD-VFGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 743 ~~~~~~~~g~-~~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
.+. ..+ ++. +++|+.+...++|+.++|.++|++.+..| |...|.++++..+++++.
T Consensus 128 lfp----~~~~~R~-sgf~i~Y~~~nlG~~iap~l~g~L~~~~G--w~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 128 LYE----PTDPRRD-GGFSLMYAAGNVGSIIAPIACGYAQEEYS--WAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HCC----CCCcccc-ceehHHHHHHHHHHHHHHHHHHHHHhhhC--hHHHHHHHHHHHHHHHHH
Confidence 110 011 233 48999999999999999999999988765 666788877666666554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00025 Score=82.74 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhhhCChHHHHHHHHHHHHHHHHHHhhch---------HHHHHHHHHHhhcccc
Q psy3157 247 IGAIASTFSLLQIISAPTV----GYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS---------VYVIFFVRILLGLFKH 313 (822)
Q Consensus 247 ~g~~~s~~~l~~~ig~~~~----G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s---------~~~l~i~r~l~Gig~g 313 (822)
.+++.++..+...+..++. +++.+|++....+.+|+++.+++.++.+++.+ .+++++..++.|+|++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4566666666666666665 56666666667888999999999888776644 5678889999999999
Q ss_pred h-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHHHHHHhh
Q psy3157 314 T-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIH---------YENGFFYICCMTSALFVVNFVYTYW 381 (822)
Q Consensus 314 ~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~---------~~~gw~~~f~i~~~~~li~~ll~~~ 381 (822)
. .|...+++.+..|++ +|.+|.+.+...+|..++..+.+.... ...+..+.|...+++.++..++.++
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999985 455776665555555555444432210 0113667787777766655544333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.7e-05 Score=86.29 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=100.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHH
Q psy3157 238 TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY----------KSVYVIFFVRIL 307 (822)
Q Consensus 238 ~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a----------~s~~~l~i~r~l 307 (822)
+.+|.++...|.+.....++.+++..+.+++.+|++.|+++.++.++.+++.+...+. ++.+.++...++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 3589999999999999999999999999999999999999999999888877554321 233344455677
Q ss_pred hhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 308 LGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 308 ~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
.+++.+. ..+...++.+..|++ +..+|++....++|..+|+.+++.+.+..
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888875 777899999999974 55689999999999999999999998875
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0014 Score=72.34 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD-LYGRKTILLTCLFTCIVSYLLLG 293 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD-r~Grr~~l~~~~ll~~i~~ll~~ 293 (822)
....++...++...-..+-+|-.+.||++..+...+......|..++-...|++.. |.++++...+++.+..++..+..
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33455556667777788888888999999999999999999999999999998887 67777777788877777666544
Q ss_pred h---hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Q psy3157 294 L---YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYE--------- 358 (822)
Q Consensus 294 ~---a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~--------- 358 (822)
+ ..+.+.+...-++.|++.|. .....+.+.++..++ +-.+|.+.....++..+|-+++|.+.|..
T Consensus 294 ~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~ 373 (403)
T PF03209_consen 294 LAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPA 373 (403)
T ss_pred HHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4 45788899999999999997 666678888888654 34589999999999999999999887742
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q psy3157 359 NGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 359 ~gw~~~f~i~~~~~li~~ll 378 (822)
.+|..+|.+-+++.+++.++
T Consensus 374 ~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 374 LAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 14556666666665555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.7e-05 Score=89.41 Aligned_cols=169 Identities=11% Similarity=0.007 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--ecc-cCccchhHHHHHHHHHHH
Q psy3157 587 YWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDS-RNSYSSLYYSFILLTVSI 663 (822)
Q Consensus 587 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~-~~~~~~l~~~~~l~~~~~ 663 (822)
+|.++...++-.++++.+...++.|+++.+|++..+++++.+.......+..++.| .|+ .++++.+..+.++.+++.
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 46666667777788888888899999999999999888777777766667667777 454 477777888888888877
Q ss_pred HHHHhhhHHHH-HHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchh
Q psy3157 664 LALYVSVNLYL-FVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQ 742 (822)
Q Consensus 664 ~~l~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (822)
+.+.+..+... +.+..+..+ .+.+...|.- +
T Consensus 96 ~~~~~~~~~~~ll~~~~~l~~-ig~g~~~~~~-----------------------------------------------~ 127 (489)
T PRK10207 96 FMTGMSLLKPDLIFIALGTIA-VGNGLFKANP-----------------------------------------------A 127 (489)
T ss_pred HHHHHhccchhHHHHHHHHHH-hccccccCCH-----------------------------------------------H
Confidence 76666543222 212222211 1111111100 0
Q ss_pred hhhhhcccCcc-ccchhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 743 IFAIQKCQGDV-FGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 743 ~~~~~~~~g~~-~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
.+..+....++ +...++++++...++|.++||.++|++.++.| |.+.|+++.+..+++++.
T Consensus 128 ~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 128 SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHHH
Confidence 01111111111 11248999999999999999999999999875 777788876655555443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=83.07 Aligned_cols=157 Identities=16% Similarity=0.116 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL----YGRKTILLTCLFTCIVS 288 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr----~Grr~~l~~~~ll~~i~ 288 (822)
..++..++.....+.+..++|.|+.+..|++..+.+.+...+.++.+++.+++|+++|| ..+|..+.....+..+.
T Consensus 277 ~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~ 356 (495)
T KOG2533|consen 277 PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII 356 (495)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56667777777777788888889987567999999999999999999999999999999 66777666655555444
Q ss_pred H-HHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchH---HHHHHHHHHH-HHHHHHHHHHHHHhcccchH
Q psy3157 289 Y-LLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKA---FSQLMMVTFL-GFFIGPAIGGHVIHYENGFF 362 (822)
Q Consensus 289 ~-ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra---~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~ 362 (822)
. +......+......+.+..+.+.+. .+.+.....+......|+ .+....+.+. |.+.+++..+.....+ +|.
T Consensus 357 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y-~~~ 435 (495)
T KOG2533|consen 357 GAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY-GWG 435 (495)
T ss_pred HHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch-hhh
Confidence 4 3333333233333322333333333 566666666666554443 2333333333 3333444444444444 777
Q ss_pred HHHHHHHH
Q psy3157 363 YICCMTSA 370 (822)
Q Consensus 363 ~~f~i~~~ 370 (822)
+.|+....
T Consensus 436 ~~f~~~~~ 443 (495)
T KOG2533|consen 436 AVFYMLVA 443 (495)
T ss_pred hHHHHHHH
Confidence 77744333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00041 Score=59.50 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy3157 225 ASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301 (822)
Q Consensus 225 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l 301 (822)
-..+.|.+|. ++++.++|..+.||+.+..++|+.+|++...++.++..+++.+..+++...+..+.+++.++++.+
T Consensus 8 RFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 8 RFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3445666775 555799999999999999999999999999999999888999999999999999999998887655
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.012 Score=66.65 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.++...++...+--..--..+.++.+-+.-+.--.+...-.-.+..++.++..|.+.||..|.+++..+.++--++..+.
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 45556666666655555556666666555454445555555667777888999999999999988776654432222221
Q ss_pred H------hh--c----hHHHHHHH---HHHhhcccch--hhHHHHHHHHhccc----c----chHHHHHHHHHHHHHHHH
Q psy3157 293 G------LY--K----SVYVIFFV---RILLGLFKHT--QVLCKAYISDICVD----S----TKAFSQLMMVTFLGFFIG 347 (822)
Q Consensus 293 ~------~a--~----s~~~l~i~---r~l~Gig~g~--~~~~~~~i~e~~p~----~----~ra~g~~~~~~~iG~~ig 347 (822)
. +. . +-+....+ -.+.|.-.-. .....++=-||... + .+..+.+.-.--+.-++|
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1 11222221 1222211111 12222333455432 1 123455555556789999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhc
Q psy3157 348 PAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 348 p~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~ 383 (822)
|++.|.+.+.. +......+.++..++..++-++++
T Consensus 166 Pl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 166 PLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 888888888888887776644443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0028 Score=61.47 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcc
Q psy3157 249 AIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICV 327 (822)
Q Consensus 249 ~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p 327 (822)
.-.++.+....+.+++.+.+.+++|.|+.+++|.+...+..+.. +-++.+.++.+-++.|++.+. ++....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34556666777888889999999999999999998887655543 456788889999999999997 8888889999887
Q ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3157 328 D--STKAFSQLMMVTFLGFFIGPAIGGHVIH 356 (822)
Q Consensus 328 ~--~~ra~g~~~~~~~iG~~igp~l~g~l~~ 356 (822)
+ ++|..+++-.....+.++|.++.-++..
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 4566888777777788888777665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=78.31 Aligned_cols=73 Identities=25% Similarity=0.491 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHHHHHHHhh
Q psy3157 222 LFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKT-ILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~-~l~~~~ll~~i~~ll~~~a 295 (822)
....+.+.|.++.|..+ +|+++.+.|.+++.--+..+++.|++|+++||+-+|+ .++.+++....+.++..+.
T Consensus 24 ~~~~g~l~pll~vy~kQ-LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 24 GARFGSLFPLLAVYFKQ-LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eecccccchHHHHHHHH-cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 34556678999999987 9999999999999999999999999999999998655 4555666666666666664
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0015 Score=76.57 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchH----
Q psy3157 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV---- 298 (822)
Q Consensus 223 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~---- 298 (822)
.+......+.+.+++. .|.+... .+...+..+...++..+..++.||+|||+.++.+.+.+.++.++.+.....
T Consensus 309 tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~ 386 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYY 386 (513)
T ss_pred hCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccC
Confidence 3334444445554443 5555332 455555666677777888999999999999999999999988887653211
Q ss_pred ----------HHHHHHHHHhhcccchhhHHHHHHHHhccccchH--HHHHHHHHHH-HHHHHHHHHHHHHhcccchHHHH
Q psy3157 299 ----------YVIFFVRILLGLFKHTQVLCKAYISDICVDSTKA--FSQLMMVTFL-GFFIGPAIGGHVIHYENGFFYIC 365 (822)
Q Consensus 299 ----------~~l~i~r~l~Gig~g~~~~~~~~i~e~~p~~~ra--~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~~~f 365 (822)
....++.++..+..|..++.+.+.+|.+|.+.|. .++......+ ...+ ....-.+.... ++...|
T Consensus 387 ~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~-~~~~~f 464 (513)
T KOG0254|consen 387 PNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEAL-GIGGTF 464 (513)
T ss_pred CCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhc-cccchH
Confidence 1112223333334444566668889999987664 3332222222 2222 11111122221 235566
Q ss_pred HHHHHHHHHHHH-HHhhhcccCCCCc
Q psy3157 366 CMTSALFVVNFV-YTYWVVTDVKKYP 390 (822)
Q Consensus 366 ~i~~~~~li~~l-l~~~~~~e~~~~~ 390 (822)
...++++.+..+ ..++++||++...
T Consensus 465 ~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 465 GYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHHHHHHHHHHHHHheEEcccCCCCc
Confidence 666666666666 5678889887643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.44 E-value=8.7e-07 Score=101.74 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=95.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH--h---hch----HHHHHHHHHHh-
Q psy3157 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG--L---YKS----VYVIFFVRILL- 308 (822)
Q Consensus 239 ~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~--~---a~s----~~~l~i~r~l~- 308 (822)
..+.+.. -+......+...++.++..++.||+|||++++.+.++.+++.+..+ . .++ -...+++-.+.
T Consensus 282 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 359 (451)
T PF00083_consen 282 NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFF 359 (451)
T ss_pred ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 3555544 1223334455556777778999999999999999888877777664 1 112 11112222222
Q ss_pred -hcccchhhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 309 -GLFKHTQVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 309 -Gig~g~~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
+++.|..+....+.+|.+|.+.| +.|+......++.+++|.+...+.+.. +-...+.+.+++.++..+..++++||
T Consensus 360 ~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 360 AFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL-GGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccchhhHHHHHHHHhheeEEEee
Confidence 22223356667888999998655 577777777788888888777776664 32445666666666777777888999
Q ss_pred CCCCc
Q psy3157 386 VKKYP 390 (822)
Q Consensus 386 ~~~~~ 390 (822)
++...
T Consensus 439 T~g~~ 443 (451)
T PF00083_consen 439 TKGKT 443 (451)
T ss_pred CCCCC
Confidence 87643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=73.79 Aligned_cols=139 Identities=17% Similarity=0.006 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHH
Q psy3157 216 FICFLDLFAASLIVPLVNNYLRTQVLLSN---FTIGAIASTFSLLQIISAPTVGYLSDLYGR-KTILLTCLFTCIVSYLL 291 (822)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~---~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr-r~~l~~~~ll~~i~~ll 291 (822)
++.++....+.....+.|......++-+. ...++....+.++..+++.+.|.+.-+++| |+.++++.+++.++..+
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga 396 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGA 396 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 34444444444444455555554555544 356788888899999999999999998886 55556776666654444
Q ss_pred HHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 292 LGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--KAFSQLMMVTFLGFFIGPAIGGHV 354 (822)
Q Consensus 292 ~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--ra~g~~~~~~~iG~~igp~l~g~l 354 (822)
++. .+|....+..-++.|+|.|. ..+......-..|++. -+.|+......+|+.+|..+-.-+
T Consensus 397 ma~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 397 MAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 433 34556666778899998886 4444444444445543 346777777777777776665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00018 Score=67.16 Aligned_cols=130 Identities=12% Similarity=0.161 Sum_probs=75.8
Q ss_pred eEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccCCCCccccccccccc
Q psy3157 625 YTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFY 702 (822)
Q Consensus 625 ~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 702 (822)
++.+..+++..++.++.| .++.++++.+..+..+..++.+......+.+...+.....+...+....
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------- 70 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALV----------- 70 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456677788888888888 4444555555656666666655555555555444433333311100000
Q ss_pred cccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhhhhhhhccchhhhHhh
Q psy3157 703 NDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSIAKVITPLLGGIISD 782 (822)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~lg~~igP~i~G~i~d 782 (822)
....+..+....++++ +++|+.++...+|..+||.++|++.+
T Consensus 71 -------------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 71 -------------------------------------AGAALIADIYPPEERG-VALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred -------------------------------------hHHHHHHHHCChhhhh-HHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 0000111111222233 69999999999999999999999988
Q ss_pred hccCcccchhhHHHHHHHHHHhh
Q psy3157 783 WVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 783 ~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
..+ |...|++..++.+++.++
T Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 113 FLG--WRAPFLFLAILALAAFIL 133 (141)
T ss_pred ccc--hHHHHHHHHHHHHHHHHH
Confidence 654 555566665555555444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=83.57 Aligned_cols=67 Identities=4% Similarity=0.057 Sum_probs=50.1
Q ss_pred hhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhh
Q psy3157 603 LFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVS 669 (822)
Q Consensus 603 ~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~ 669 (822)
.+.......+.+.+++++.+.|++.+...++..++.++++ .++.++.+.+.++.++.+++.++.+++
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 3334444556678899999999999999999999999999 444566666677777777776665543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=8.4e-05 Score=82.42 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=108.9
Q ss_pred hhcccCCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccCC
Q psy3157 612 LTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGE 689 (822)
Q Consensus 612 l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~ 689 (822)
.++.+|.+....|++.....++-+++.+++| .++.+|++.+.++..+-+++.++..++...|++++.-.+.+. +..
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGi-GeA- 136 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGI-GEA- 136 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-
Confidence 4556799999999999999999999999999 444467777777777777777777777777777765544431 100
Q ss_pred CCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHHHHHhhhh
Q psy3157 690 EKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSIA 769 (822)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~lg 769 (822)
.+. .+++.++.....+++++. ++|++|++..+|
T Consensus 137 ---------------------------------s~~-------------~ia~s~IaD~f~~~~Rs~-~~~ify~~ipvG 169 (493)
T KOG1330|consen 137 ---------------------------------SYS-------------PIAPSLIADSFPDDKRSR-VLGIFYFAIPVG 169 (493)
T ss_pred ---------------------------------hhc-------------ccchhHhhhcCcchhhhH-HHHHhhhhcccc
Confidence 000 112223333445666665 999999999999
Q ss_pred hhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhheehhhh
Q psy3157 770 KVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTRVVMMK 812 (822)
Q Consensus 770 ~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~ 812 (822)
..+|-+.++++.+.++ .|.+.|.+.+++.++..++..++...
T Consensus 170 sglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 170 SGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred cceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999987 48888999999888777775444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.043 Score=63.06 Aligned_cols=121 Identities=7% Similarity=0.112 Sum_probs=87.2
Q ss_pred HHHhcCC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh----ch--------
Q psy3157 236 LRTQVLL-----SNFTIGAIASTFSLLQIIS-APTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY----KS-------- 297 (822)
Q Consensus 236 l~~~~g~-----s~~~~g~~~s~~~l~~~ig-~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a----~s-------- 297 (822)
++|.+.+ +...+.|+-+...+...+. .++.+++++|++|++++-+....+.+..+++++. .+
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~ 108 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALA 108 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence 4555544 4467889988888887776 8999999999999999887777776666665553 11
Q ss_pred -------------------HHHHHHHHHHhhcccch-hh-HHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 298 -------------------VYVIFFVRILLGLFKHT-QV-LCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHV 354 (822)
Q Consensus 298 -------------------~~~l~i~r~l~Gig~g~-~~-~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l 354 (822)
.|...+..+...+.... .+ ..++++.|.+.. ..|-++++..+.++|.++|+.+..++
T Consensus 109 ~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 109 DKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333444443 44 678999999975 35789999999999999999998887
Q ss_pred Hh
Q psy3157 355 IH 356 (822)
Q Consensus 355 ~~ 356 (822)
.+
T Consensus 189 ~~ 190 (472)
T TIGR00769 189 SK 190 (472)
T ss_pred HH
Confidence 73
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00013 Score=80.65 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhch----HHHHHHHHHHhhcccc--hhhHHHHHHHHhccccchH
Q psy3157 259 IISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS----VYVIFFVRILLGLFKH--TQVLCKAYISDICVDSTKA 332 (822)
Q Consensus 259 ~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s----~~~l~i~r~l~Gig~g--~~~~~~~~i~e~~p~~~ra 332 (822)
+.|-.+..++.|++|||++.+.|.+++++..+..+...| -..++++..+..++.. .-.....+.+|.+|.|.|+
T Consensus 362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~ 441 (538)
T KOG0252|consen 362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS 441 (538)
T ss_pred CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence 335666778999999999999999999999999888765 2334444444444432 2344456678999998775
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q psy3157 333 --FSQLMMVTFLGFFIGPAIGGHVIH-----YENGFFYICCMTSALFVVNFVYTYWVVTDVKKYP 390 (822)
Q Consensus 333 --~g~~~~~~~iG~~igp~l~g~l~~-----~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~ 390 (822)
.|+.....-+|.++|...-.++.+ .. +.+++|++.+.+.++..+. -+++||++.+.
T Consensus 442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~ 504 (538)
T KOG0252|consen 442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILF-TLLIPETKGKS 504 (538)
T ss_pred hhhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHhe-eEEeecccccC
Confidence 677788888899999888888887 44 8899999999988877666 45667776543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00044 Score=78.17 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=102.5
Q ss_pred hhhHHhhhcccCCCccc-eeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy3157 606 SNYISVLTHNFHANSQV-TGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSC 682 (822)
Q Consensus 606 ~~~~~~l~~~~g~s~~~-~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 682 (822)
+...+++.+.+|++..+ .|.+.++...+..+..+..| .|+.+.++.+..+.+.-++..++++++.+.+.+.+.-++.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777888999999 99999999999999999999 4444556556666666666666666766666666655555
Q ss_pred hccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccchhhhHH
Q psy3157 683 KKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIY 762 (822)
Q Consensus 683 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gi~ 762 (822)
+.+-+ +.|+ .. .++..-.+..+++ ++.|+.
T Consensus 126 GvaEA----~~~A-----------------------------~~----------------syI~~WfP~kER~-ratsi~ 155 (511)
T TIGR00806 126 SVTMA----ARIA-----------------------------YS----------------SYIFSLVPPSRYQ-RAAAYS 155 (511)
T ss_pred HHHHH----HHHH-----------------------------HH----------------HHHHHHCCHHHHH-HHHHHH
Confidence 43221 1111 00 0111111233444 599999
Q ss_pred HHHhhhhhhhccchhhhHhhhccC-cccchhhHHHHHHHHHHhhheehh
Q psy3157 763 NSLTSIAKVITPLLGGIISDWVQD-NYKVTFLVAFLFGAVGVVTTRVVM 810 (822)
Q Consensus 763 ~~~~~lg~~igP~i~G~i~d~~~~-~~~~~f~~~~~~~l~~~~~~~~~~ 810 (822)
++...+|.+++|++++++.. +|. .|....+++.....+++++..++.
T Consensus 156 ~sg~~vG~~Ia~~L~qll~s-~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 156 RAAVLLGVFLSSVLGQLLVT-LGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999554 332 456567777777777777654444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.031 Score=65.33 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHH-HHHHHHHh
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-TCLFTCI-VSYLLLGL 294 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-~~~ll~~-i~~ll~~~ 294 (822)
..++.+++....--.....+...+|-+....+.+.+++.+|..+|+.++|++.++.-++...+ ++..+.+ ++..+...
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~ 101 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYA 101 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333333333455568889999999999999999999999998874433332222 1111111 11111111
Q ss_pred hch----H-HHHHHHHHHhhcccch-hhHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHH
Q psy3157 295 YKS----V-YVIFFVRILLGLFKHT-QVLCKAYISDICV-DSTKAFSQLMMVTFLGFFIGPAIGGHVIH-YENGFFYICC 366 (822)
Q Consensus 295 a~s----~-~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p-~~~ra~g~~~~~~~iG~~igp~l~g~l~~-~~~gw~~~f~ 366 (822)
... . ..++...++.|+..|+ .|....+..+... .-++..|.......+|.++|.++.++++- .. |-....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l-G~~~t~~ 180 (521)
T PRK03612 102 AFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL-GLIRTAA 180 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc-chHHHHH
Confidence 111 1 1223334556666675 6666555555433 23456788888899999999999888764 55 5555555
Q ss_pred HHHHHHHHHHHH
Q psy3157 367 MTSALFVVNFVY 378 (822)
Q Consensus 367 i~~~~~li~~ll 378 (822)
+.+.+.++..++
T Consensus 181 ~~a~l~~~~a~~ 192 (521)
T PRK03612 181 LTGSLNLLAALV 192 (521)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.026 Score=66.22 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHH---HHHHHHHhhcccch-hhHHHHHHHHhccc--c
Q psy3157 256 LLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYV---IFFVRILLGLFKHT-QVLCKAYISDICVD--S 329 (822)
Q Consensus 256 l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~---l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~ 329 (822)
.....+....+.+.|++|||.....+.++..++.++.++...... ..+...+..++.+. +.....+.+|++|. |
T Consensus 361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r 440 (521)
T KOG0255|consen 361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR 440 (521)
T ss_pred HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 344555566689999999999999999999999999988654332 44444444455553 66669999999997 5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q psy3157 330 TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPT 391 (822)
Q Consensus 330 ~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~~~~ 391 (822)
..+.+.......+|.+++|.+..........+.... .+.+..+..++..+++||+....-
T Consensus 441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcCcccCCCCC
Confidence 556888888999999999988766554322222222 455555555555678888775443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=68.24 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHHH
Q psy3157 215 SFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG--RKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~G--rr~~l~~~~ll~~i~~ll~ 292 (822)
.+..++....+....-....+..+.+|.++.+.|-+.+...+++.+.+....+..+|.. -+-.+..++.+..-..++.
T Consensus 267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll 346 (451)
T KOG2615|consen 267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL 346 (451)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 33444444444443333333334568999999999999999999999999999999987 6667777777777777777
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+.+.....++++..+-.+..+. .+....++....|..+| .+|+......++-++||+++|.+..+..+=+.++...+
T Consensus 347 s~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~ 426 (451)
T KOG2615|consen 347 SLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWG 426 (451)
T ss_pred hccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehH
Confidence 8888888888888888887775 66777788888887655 48999999999999999999988766533333333333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.046 Score=61.11 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhc
Q psy3157 248 GAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDIC 326 (822)
Q Consensus 248 g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~ 326 (822)
+.+.-+-.+...+..+.+.++.+|+..+.=+.++.++++++.++.+++++.+.-+++-++.+++.|. -....++ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 4466666677778888888999998755445556667888888889999999888899999998885 5555554 4455
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 327 VDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 327 p~~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
++ +..+-+..+.+.++++|+..-..+....-+.|..+.+...+.++..+..++.+|.++
T Consensus 141 ~~--~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~ 199 (402)
T PF02487_consen 141 GK--SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP 199 (402)
T ss_pred Cc--cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 54 446667778888888888776655552113466777777666655555455565443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0011 Score=74.70 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHhhhcccC----CCccceeeEEehhhhhccccceeee-eccc--CccchhHHHHHHHH
Q psy3157 588 WGIFLIKFLYALAMSLFYSNYISVLTHNFH----ANSQVTGYTVSFQGLVGSFSNVLIH-IDSR--NSYSSLYYSFILLT 660 (822)
Q Consensus 588 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g----~s~~~~g~l~si~gi~~~v~~i~~G-~~~~--~~~~~l~~~~~l~~ 660 (822)
+.++..-+.==++++++...+..|+....+ ++.+++.-+.+..+..--+..++.| +.++ ++++++..+.+++.
T Consensus 24 ~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~ 103 (498)
T COG3104 24 YLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMA 103 (498)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 555555555566777777777778877766 9988886666666555555566666 4444 78888999999999
Q ss_pred HHHHHHHhhh--HHHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccc
Q psy3157 661 VSILALYVSV--NLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNL 738 (822)
Q Consensus 661 ~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (822)
++.+++.... ....+.+.+++.. .+.|--+|.- +.++
T Consensus 104 iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~K~Ni-------------S~ll--------------------------- 142 (498)
T COG3104 104 IGHLVLAISSVSGPGGLYIGLALII-VGTGLFKPNI-------------SSLL--------------------------- 142 (498)
T ss_pred HHHHHHhccccccccHHHHHHHHHH-hccccccccH-------------HHHH---------------------------
Confidence 9988887663 2333333222222 1222222211 1111
Q ss_pred cchhhhhhhcccCccccchhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 739 DLGQIFAIQKCQGDVFGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 739 ~~~~~~~~~~~~g~~~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
++.+. .++-+....++++++..++|++++|++.|++.++.| |...|..+++..++|++.
T Consensus 143 --g~ly~----~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g--~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 143 --GELYP----KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG--WHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred --HHhcC----CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHH
Confidence 11110 111112237888888899999999999999999886 777799988888888776
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.024 Score=63.55 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---------hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-----chHHHHHHHHH
Q psy3157 276 TILLTCLFTCIVSYLLLGLYK---------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-----TKAFSQLMMVT 340 (822)
Q Consensus 276 ~~l~~~~ll~~i~~ll~~~a~---------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-----~ra~g~~~~~~ 340 (822)
+++.++.++..+|.++..++. +.+.++++.++.++|.|. =+...++.+|.++++ .+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567778888888888844431 236788888999999987 688899999999753 23578899999
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 341 FLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 341 ~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
++|..+++.+.+++-+.. ||.+.|.+.++..+++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHH
Confidence 999999999999998887 99999999988887776653
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.045 Score=62.83 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=108.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcc
Q psy3157 233 NNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVG-YLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF 311 (822)
Q Consensus 233 ~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G-~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig 311 (822)
+.|+...++++..+.+.+.+...+...+++.+.. .+...+|-|+++..|++.-.+..++.+++++.|+++...++.++.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA 344 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence 3456667999999999999998888888888776 788889999999999999999999999999999999999988887
Q ss_pred cchhhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 312 KHTQVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 312 ~g~~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
....+...++++.+..+ ++++.++......+..+++|.+-+.+...+
T Consensus 345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77788888999998875 466799999999999999999888776544
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=60.70 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhh
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTCIVSYLLLGLY 295 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~~i~~ll~~~a 295 (822)
...+...+...+..-+-.|+...++.+...+.-....+.-......+++++++|-| ||-+++.++.++..++.++..++
T Consensus 45 ~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 45 NEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred HHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444544455566688888998887777778888777888889999999975 88888888888887776554432
Q ss_pred ch-------------------------HHHHHHHHHHhhcccch-hhHHHHHHHHhccc---cc-----hHHHHHHHHHH
Q psy3157 296 KS-------------------------VYVIFFVRILLGLFKHT-QVLCKAYISDICVD---ST-----KAFSQLMMVTF 341 (822)
Q Consensus 296 ~s-------------------------~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~---~~-----ra~g~~~~~~~ 341 (822)
.. ...++.+.-+..+|.|. -+...++-+|-++. +. +.+.++....+
T Consensus 125 a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~ 204 (571)
T KOG1237|consen 125 AMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQN 204 (571)
T ss_pred HHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHH
Confidence 11 12455556666677776 67778888898873 22 23677788888
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q psy3157 342 LGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 342 iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~ 379 (822)
+|..++-.+.-++-+.. ||.+.|.+..++.+++.++.
T Consensus 205 ~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 205 GGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHH
Confidence 88888877777776665 99999998888877766553
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.061 Score=63.53 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC--------ChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 250 IASTFSLLQIISAPTVGYLSDLYG--------RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 250 ~~s~~~l~~~ig~~~~G~LsDr~G--------rr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
++++..++..+|.+..|.+....- +|++.+....++.++.++..+.-....+++..++.|++.|+ ++....
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~ 475 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIAL 475 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHH
Confidence 788899999999999998872211 22333333333666666666654446899999999999997 899999
Q ss_pred HHHHhccccch--HHHHHHHHHHHHHHHH-HHHHHHHHhcc------------cchHHHHHHHHHHHHHHHHHHhhhc
Q psy3157 321 YISDICVDSTK--AFSQLMMVTFLGFFIG-PAIGGHVIHYE------------NGFFYICCMTSALFVVNFVYTYWVV 383 (822)
Q Consensus 321 ~i~e~~p~~~r--a~g~~~~~~~iG~~ig-p~l~g~l~~~~------------~gw~~~f~i~~~~~li~~ll~~~~~ 383 (822)
+++|+|. +.- -+.+......+|..+- -.+.|.+.+.- .=++..|.+.++++++++++..++.
T Consensus 476 i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 476 VTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 9999998 433 2455555566665553 45666666532 1168889999988888887755444
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.024 Score=64.72 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=67.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcc-cCCCccceeeEEehhhhhccccceeee-ecccCc--cchhHHHHHH
Q psy3157 583 DWSAYWGIFLIKFLYALAMSLFYSNYISVLTHN-FHANSQVTGYTVSFQGLVGSFSNVLIH-IDSRNS--YSSLYYSFIL 658 (822)
Q Consensus 583 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~~~--~~~l~~~~~l 658 (822)
+|+..|...+..++.+.-++.+.+..-+|+++. .+.+.+..|++.+...++.++.++..| ...+.. +++++.++++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 466678888888999988888888888888774 377888889999999999999999999 444433 6778888888
Q ss_pred HHHHHHHH
Q psy3157 659 LTVSILAL 666 (822)
Q Consensus 659 ~~~~~~~l 666 (822)
++++.++.
T Consensus 112 ~~~g~llY 119 (488)
T KOG2325|consen 112 AIIGNLLY 119 (488)
T ss_pred HHHHHHHH
Confidence 88887765
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.21 Score=56.87 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc
Q psy3157 251 ASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS 329 (822)
Q Consensus 251 ~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~ 329 (822)
.++.+....+.+++.+.+.|+.|.|+.+.++.....+..+.+.+. |-+.+++..++.|+|.+. +.....++++..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677778888999999999999999999999998887776655544 566778889999999997 888889999988764
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHH
Q psy3157 330 --TKAFSQLMMVTFLGFFIGPAIGG 352 (822)
Q Consensus 330 --~ra~g~~~~~~~iG~~igp~l~g 352 (822)
+|..++.-.....+.++|..+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 56677766666666666655443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.052 Score=60.63 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=90.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHhhcccch
Q psy3157 240 VLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR-KTILLTCLFTCIVSYLLLGLYK----SVYVIFFVRILLGLFKHT 314 (822)
Q Consensus 240 ~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Gr-r~~l~~~~ll~~i~~ll~~~a~----s~~~l~i~r~l~Gig~g~ 314 (822)
-|.+....|++.....++.++++.+.|.+.||... |.++++......++.+.....+ ..+.++....+.|++...
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG 375 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence 46666788999999999999999999999999874 4555555555555532222221 234445555666666644
Q ss_pred -hhHHHHHHHHhc-cc-cchHHHHHHHHHHHHHHHHHHHHHHHHhccc--chHH-HHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 315 -QVLCKAYISDIC-VD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYEN--GFFY-ICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 315 -~~~~~~~i~e~~-p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~--gw~~-~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+|....+-.|.. |. ++-..|+.++...+-+++-.++-+...+..+ +|.+ .-+..+...++.+++..++.|+.+
T Consensus 376 ~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 376 YLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 777777777754 54 4445777777666666666666676666542 2333 233333334444444445544433
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.9 Score=47.49 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCChHHHHH-HHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD-----LYGRKTILLT-CLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD-----r~Grr~~l~~-~~ll~~ 286 (822)
.+.+.+.+.+.-.+.+. .+|..++. -|.|.++.+....+ +..+ .--++|.++.| |+|||+..++ +..+.+
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~a-y~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG 110 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFA-YWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLG 110 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhh-hhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHH
Confidence 45556666655555555 67766663 68888777654332 2332 34578999999 9999987653 333333
Q ss_pred HHHHHHHhh-----------chHHHHHHHHHHhhcccchh-hHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 287 VSYLLLGLY-----------KSVYVIFFVRILLGLFKHTQ-VLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHV 354 (822)
Q Consensus 287 i~~ll~~~a-----------~s~~~l~i~r~l~Gig~g~~-~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l~g~l 354 (822)
...++.+.. ++...+....++.-+..+.. .+.-.+.-.+..++. .|..+.+..+|.-.|.++++.+
T Consensus 111 ~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 111 LFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--LGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--cCchhHHHHHHHhhhHHhhcce
Confidence 333333221 22222222233333333331 222333333443332 3444566677777777666543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.03 Score=58.04 Aligned_cols=104 Identities=22% Similarity=0.165 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy3157 224 AASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFF 303 (822)
Q Consensus 224 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i 303 (822)
+-....|++- |+.+.+++...++|.+..+.+...++.+.+.|-++|+-|||+.-+.-++...+++ +.-.++.+-.+++
T Consensus 52 gDWLQgPYvY-yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmV 129 (454)
T KOG4332|consen 52 GDWLQGPYVY-YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMV 129 (454)
T ss_pred hhhhcCceee-eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEee
Confidence 3334445443 4455688888899988877777788888999999999999996554443333322 2334678889999
Q ss_pred HHHHhhcccch-hhHHH-HHHHHhcccc
Q psy3157 304 VRILLGLFKHT-QVLCK-AYISDICVDS 329 (822)
Q Consensus 304 ~r~l~Gig~g~-~~~~~-~~i~e~~p~~ 329 (822)
+|++.|+..+. ++..- -++.|..++|
T Consensus 130 GR~LGGiaTsLLFSaFEsWliaEHnekr 157 (454)
T KOG4332|consen 130 GRVLGGIATSLLFSAFESWLIAEHNEKR 157 (454)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999885 55553 4566766554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.02 Score=68.59 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=87.7
Q ss_pred hhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--eccc-CccchhHHHHHHHHHHHHHHHhhhH--------
Q psy3157 603 LFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSR-NSYSSLYYSFILLTVSILALYVSVN-------- 671 (822)
Q Consensus 603 ~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~-~~~~~l~~~~~l~~~~~~~l~~~~~-------- 671 (822)
++...+..|+.+.+|++...+..+........-+..++.| .|++ ++++.+.++.++..++.+++.+...
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~ 84 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLH 84 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchH
Confidence 3345556677777788887776555555555556666666 3333 6666667777776666665554311
Q ss_pred HHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccC
Q psy3157 672 LYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQG 751 (822)
Q Consensus 672 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 751 (822)
....++. +.....+.|.-+|.. .....++- + + ..
T Consensus 85 ~~~~l~g-LaLia~G~GgiKp~v---------------------------------saf~gdqf---~--------~-~~ 118 (654)
T TIGR00926 85 DLLDLLG-LALIALGTGGIKPCV---------------------------------SAFGGDQF---E--------E-RQ 118 (654)
T ss_pred HHHHHHH-HHHHHhhccccccCc---------------------------------hhhhHhhc---C--------c-cc
Confidence 0111111 111112222222221 11111111 0 0 01
Q ss_pred ccccchhhhHHHHHhhhhhhhccchhhhHhhhcc-----CcccchhhHHHHHHHHHHhh
Q psy3157 752 DVFGSNISGIYNSLTSIAKVITPLLGGIISDWVQ-----DNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 752 ~~~~~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~-----~~~~~~f~~~~~~~l~~~~~ 805 (822)
.+...+.+-++.++.++|+++++++.+++.+..+ ..|...|.+++++.++++++
T Consensus 119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 1223358899999999999999999999986542 13666688888777777665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.42 Score=54.71 Aligned_cols=145 Identities=10% Similarity=0.165 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-hc---------hHHHHHHHHHHhhcc
Q psy3157 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL-YK---------SVYVIFFVRILLGLF 311 (822)
Q Consensus 242 ~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~-a~---------s~~~l~i~r~l~Gig 311 (822)
++....|.+..+..++.++|..+..+..-++.-|+++.++.++.++..+.-.. .+ +.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 88888888888888888888888888777778888888777766655544222 11 112222223444444
Q ss_pred cch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHhh
Q psy3157 312 KHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYEN-------GFFYICCMTSALFVVNFVYTYW 381 (822)
Q Consensus 312 ~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~-------gw~~~f~i~~~~~li~~ll~~~ 381 (822)
.+. +.+...+++++.|+. +..+|++....++|..++..++..+.+..+ +..+..++..++.++.+.+ ..
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l-l~ 410 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL-LF 410 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH-HH
Confidence 444 667788899999984 555888888889999888888888876541 2344455555555444444 34
Q ss_pred hcccCC
Q psy3157 382 VVTDVK 387 (822)
Q Consensus 382 ~~~e~~ 387 (822)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 455533
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.26 Score=55.18 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH--HH---HHHHHHHhhchHHHHHHHHHHhhcccch-hhH
Q psy3157 244 NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFT--CI---VSYLLLGLYKSVYVIFFVRILLGLFKHT-QVL 317 (822)
Q Consensus 244 ~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll--~~---i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~ 317 (822)
..+..+...++.+|.+++.--...+ |+ |++.+.+.+- .. +...+.-+.++.|.+++..+.-|+..|+ +..
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566677777777766664332221 33 3333333222 22 2222233467888888889999999986 888
Q ss_pred HHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 318 CKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 318 ~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
....+.+-.+++.| ++|....+-++|..++.+++-.+-
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888887776544 788888888888888887776553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.5 Score=51.21 Aligned_cols=128 Identities=13% Similarity=0.218 Sum_probs=86.5
Q ss_pred HHHHHHHH-HhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy3157 230 PLVNNYLR-TQVLLSNFTIG-AIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307 (822)
Q Consensus 230 ~~l~~~l~-~~~g~s~~~~g-~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l 307 (822)
|++..|+. .+.+++..++. -+.-...-.+.+.-.+.=.+.|..--|+++++-.+...+..++..+.++.+.+=+.-+.
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~F 104 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFF 104 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhh
Confidence 44444443 34456655543 11222233344445555568898888998887776667777777788888888777777
Q ss_pred hhcccchhhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3157 308 LGLFKHTQVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHY 357 (822)
Q Consensus 308 ~Gig~g~~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~ 357 (822)
.|...+.-.+-++++-..+++ ..|+.|....+.-.|-..|..++..++..
T Consensus 105 yG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 105 YGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred cChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 777776655666777666665 36788888888888888888888887765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.041 Score=64.67 Aligned_cols=145 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHH
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSL-LQIISAPTVGYLSDLYG--RKTILLTCLFTCIVSYL 290 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~ig~~~~G~LsDr~G--rr~~l~~~~ll~~i~~l 290 (822)
+.+...........+.+++|.|++.+|++++++++++.++..+ +.++|.+++|++..|+. .|.++.+..+...+..+
T Consensus 310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 4455666677777888999999999999999999998877666 46678899999999875 34444433333333322
Q ss_pred H---HHh--hc---------h----------------------------------------HHHHHHHHHHhhcccch-h
Q psy3157 291 L---LGL--YK---------S----------------------------------------VYVIFFVRILLGLFKHT-Q 315 (822)
Q Consensus 291 l---~~~--a~---------s----------------------------------------~~~l~i~r~l~Gig~g~-~ 315 (822)
+ ..+ ++ . +..+++..++.-+..+. .
T Consensus 390 ~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~ 469 (539)
T PF03137_consen 390 LYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcc
Confidence 2 000 00 0 11222222222222232 4
Q ss_pred hHHHHHHHHhccccchH--HHHHHH-HHHHHHHHHHHHHHHHHhcc
Q psy3157 316 VLCKAYISDICVDSTKA--FSQLMM-VTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 316 ~~~~~~i~e~~p~~~ra--~g~~~~-~~~iG~~igp~l~g~l~~~~ 358 (822)
.+...++-+.++++.|+ +|+..+ ..-+|.+-||++-|.++|..
T Consensus 470 ~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 470 VPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ----------------------------------------------
T ss_pred cchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 45555556777776664 555443 34558888999999888864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.19 Score=52.78 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=85.0
Q ss_pred hhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhh-------HHHHH
Q psy3157 605 YSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSV-------NLYLF 675 (822)
Q Consensus 605 ~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~-------~~~~~ 675 (822)
++.+..-+++.+|++.++...+.....++..+ +++.| .|..+.+..+.++.++..++..+++... +.|..
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 45566778889999999987666555555554 46667 5556666666778777777776665432 22333
Q ss_pred HHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCcccc
Q psy3157 676 VLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFG 755 (822)
Q Consensus 676 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 755 (822)
.+.... +..+ ..| +..+.+ ...-++..+.+|
T Consensus 100 ~~~~~l-~~~s-----~~~-------~~ta~l------------------------------------vt~~~NFP~~RG 130 (250)
T PF06813_consen 100 CLFLFL-GGNS-----SCW-------FNTASL------------------------------------VTCVRNFPRSRG 130 (250)
T ss_pred HHHHHH-Hccc-----HHH-------hhhHHH------------------------------------HHHHHhCccccC
Confidence 222221 1111 111 111111 111122344555
Q ss_pred chhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhh
Q psy3157 756 SNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTT 806 (822)
Q Consensus 756 ~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~ 806 (822)
+ +.|+.-.+.++++.+-..+.-.+++. +...+.+..+....+++++.+
T Consensus 131 ~-vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fll~la~~~~~v~l~~~ 178 (250)
T PF06813_consen 131 T-VVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFLLFLAVLPAVVCLVAM 178 (250)
T ss_pred c-eehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHh
Confidence 4 99999999999988877777666543 223333445544455555543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.71 E-value=11 Score=43.28 Aligned_cols=51 Identities=8% Similarity=-0.141 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Q psy3157 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAI 350 (822)
Q Consensus 297 s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra~g~~~~~~~iG~~igp~l 350 (822)
.++..++.-++.|++.|. .....++.+ .+|++ .++.+..+.+++++++.++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~--~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST--YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH--HHHHHHhcchhHHHHHHHH
Confidence 355556667777887775 555566655 45543 3444455555655555444
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=89.94 E-value=18 Score=41.56 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhh---hCChHHHHHHHHHHHHHHH
Q psy3157 217 ICFLDLFAASLIVPLVNNYLRTQ--VLLSN-FTIGAIASTFSLLQIISAPTVGYLSDL---YGRKTILLTCLFTCIVSYL 290 (822)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~--~g~s~-~~~g~~~s~~~l~~~ig~~~~G~LsDr---~Grr~~l~~~~ll~~i~~l 290 (822)
..+..+...+......|..+.-. .+.+. .-.+.......++..+++.+++.+++| +||++++.++.++..++.+
T Consensus 248 ~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~ 327 (461)
T KOG3098|consen 248 FFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFL 327 (461)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHH
Confidence 33444445555555555433221 22222 223333444555666666777777754 7899999988888877777
Q ss_pred HHHhh------------------chHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHH
Q psy3157 291 LLGLY------------------KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAI 350 (822)
Q Consensus 291 l~~~a------------------~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l 350 (822)
+.... +++...++..++.|++-++ ....+.+++..+|. +..+.+++..-..++..++-..
T Consensus 328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 76542 1355667778899999887 77888999999965 4556666666666665554433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.8 Score=46.88 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCChHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRT-QVLLSNFTIGAIASTFSLLQIISAPTVGYLSD-----LYGRKTILLT 280 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsD-----r~Grr~~l~~ 280 (822)
++.+.+++.+.-.+.....+|..+++ .-+.|.++.|... .....+. .-++|.++.| |+|||+..++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhh
Confidence 45566666666555555556655543 1477888877432 2222222 3467777777 7999997664
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.35 E-value=16 Score=42.51 Aligned_cols=114 Identities=10% Similarity=0.118 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh---------ch---------------
Q psy3157 243 SNFTIGAIASTFSLLQ-IISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY---------KS--------------- 297 (822)
Q Consensus 243 s~~~~g~~~s~~~l~~-~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a---------~s--------------- 297 (822)
.++.+.++=....+.. ++...+..+++++++|.+++-+....+.....++++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 4566666655555543 4456788999999999998887766666665555541 11
Q ss_pred -------HHHHHHHHHHhhcccch-hh-HHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3157 298 -------VYVIFFVRILLGLFKHT-QV-LCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIH 356 (822)
Q Consensus 298 -------~~~l~i~r~l~Gig~g~-~~-~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~ 356 (822)
.|.+.+..++.-+.... .+ ..+.+..|.++.+ .|-++++..+.++|.+++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222222 22 3477888888653 577999999999999998888888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=88.66 E-value=16 Score=41.68 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---hch-H-HHHH
Q psy3157 228 IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL---YKS-V-YVIF 302 (822)
Q Consensus 228 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~---a~s-~-~~l~ 302 (822)
+.+.+..|+.. .|++...+|..-+...+..+.+.....++.+|+|..+.=+++...-.++..++.. ++. . ...-
T Consensus 277 f~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s 355 (432)
T PF06963_consen 277 FGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS 355 (432)
T ss_pred CcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence 45566668877 4999999999999999999999999999999999887766665544433333222 111 1 1222
Q ss_pred HHHHHhhcccc------hhhHHHHHHHHhccccchH--HHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKH------TQVLCKAYISDICVDSTKA--FSQLMMVTFLGFFIGPAI 350 (822)
Q Consensus 303 i~r~l~Gig~g------~~~~~~~~i~e~~p~~~ra--~g~~~~~~~iG~~igp~l 350 (822)
+..++.|+..+ .=....-++.|..|++.|+ .|.-+...++--.+-..+
T Consensus 356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22333343332 2234466777888876664 566555555555444333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.23 Score=42.01 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-eccc-Cccch
Q psy3157 592 LIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSR-NSYSS 651 (822)
Q Consensus 592 l~~~l~~~~~~~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~-~~~~~ 651 (822)
+..++...+...++++++.|+.+ .|+++.++|.+.++.-+...++.++.| +.++ ++.+.
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 44566666777788889999976 799999999999999999999999999 4444 44443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.65 E-value=2.2 Score=46.83 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=46.1
Q ss_pred hhhhHHhhhcccCCCccceeeEEehhhhhccccceeee--ecccCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q psy3157 605 YSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH--IDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVS 681 (822)
Q Consensus 605 ~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G--~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 681 (822)
+..+...+-+.+|+++.+++.+.......+.+.+.+.| .|+.++++..+...++.+++++. -..++.+..++.-++
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVL 130 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHH
Confidence 33344444467899999999888777777777777788 55556665554444555555442 233455555444333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.62 E-value=47 Score=38.23 Aligned_cols=122 Identities=10% Similarity=0.129 Sum_probs=79.0
Q ss_pred HHHhcCC---CHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh---------chH----
Q psy3157 236 LRTQVLL---SNFTIGAIASTFSL-LQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY---------KSV---- 298 (822)
Q Consensus 236 l~~~~g~---s~~~~g~~~s~~~l-~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a---------~s~---- 298 (822)
+++.+.+ .+..+.++-+...+ +.++..++.+++++++.+.+++-+.+..+....+++++. +++
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~ 128 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSR 128 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHH
Confidence 4444443 45667777777777 567788899999999999999887777777766666652 110
Q ss_pred -------------------HHHHHHHHHhhcccch-hh-HHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3157 299 -------------------YVIFFVRILLGLFKHT-QV-LCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVI 355 (822)
Q Consensus 299 -------------------~~l~i~r~l~Gig~g~-~~-~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~ 355 (822)
|...+..++.=+.... .+ .......|.+.. ..|-+++++.+.+++..++..+..++.
T Consensus 129 ~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 129 DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111121221 22 345666777764 367899999999999988888887776
Q ss_pred hc
Q psy3157 356 HY 357 (822)
Q Consensus 356 ~~ 357 (822)
..
T Consensus 209 k~ 210 (509)
T COG3202 209 KH 210 (509)
T ss_pred hc
Confidence 53
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=83.70 E-value=3.9 Score=49.24 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=49.8
Q ss_pred hhhhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-ecccCccchh-HHHHHHHHHHHHHHHhh
Q psy3157 603 LFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-IDSRNSYSSL-YYSFILLTVSILALYVS 669 (822)
Q Consensus 603 ~~~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~~~~~~~~l-~~~~~l~~~~~~~l~~~ 669 (822)
.++.....-+.++++++..+.|++.+..-+++.+.-+++. ...++.++++ -.+.++++++.++..+.
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alP 182 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALP 182 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhCh
Confidence 4444445566778999999999999999999999998888 6666555554 56677777776665543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.46 E-value=47 Score=36.45 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH----HHHHH---HHHHHH
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL----TCLFT---CIVSYL 290 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~----~~~ll---~~i~~l 290 (822)
+..++..+-.....+..|+ .|-..-+.+.+.+.+...+.+|+...-++.|.--.-+.+. +|++. ..+..+
T Consensus 19 ~aa~GlvyElal~tLatyL---lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~ 95 (508)
T COG4262 19 CAACGLVYELALGTLATYL---LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYL 95 (508)
T ss_pred HHHhHHHHHHHHHHHHHHh---cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3333444444444444444 4556677788899998888888888877766432221111 22221 111111
Q ss_pred HHHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHH
Q psy3157 291 LLGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISD 324 (822)
Q Consensus 291 l~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e 324 (822)
.+++ .++-+.+++..++.|.-.|. .|..+.++..
T Consensus 96 ~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 96 LFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 2222 24667788888888888888 7887777766
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=82.37 E-value=14 Score=40.21 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhc
Q psy3157 253 TFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDIC 326 (822)
Q Consensus 253 ~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~ 326 (822)
...+..+..+++.+.+..++|.|+++.++........ ..-+-+.+..++......|++.+. +..--++++++-
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3445556777777899999999999988776654332 222335677888888999999885 544444444443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=81.61 E-value=3.8 Score=46.33 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhc-
Q psy3157 249 AIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDIC- 326 (822)
Q Consensus 249 ~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~- 326 (822)
|-..++.+...+.+....++++|+|-|+.+..+...+.++..+.++..+.+.....+...|+-.+. ..+-+..++++.
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~ 415 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI 415 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence 556667777788899999999999977777777777888888888888888888888888854442 322222222221
Q ss_pred -----------c---------c--cchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy3157 327 -----------V---------D--STKA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFV 377 (822)
Q Consensus 327 -----------p---------~--~~ra--~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~l 377 (822)
| . ++++ .|+.+....+.+++..+..|.+.+..++-+.+-++.+++.+....
T Consensus 416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~ 490 (498)
T KOG0637|consen 416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG 490 (498)
T ss_pred hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence 1 0 1122 566777777888887777777777765555555555555444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 822 | ||||
| 3ofe_A | 91 | Structured Domain Of Drosophila Melanogaster Boca P | 1e-36 | ||
| 3off_A | 90 | Structured Domain Of Drosophila Melanogaster Boca P | 2e-36 | ||
| 2kgl_A | 195 | Nmr Solution Structure Of Mesd Length = 195 | 1e-29 | ||
| 2i9s_A | 97 | The Solution Structure Of The Core Of Mesoderm Deve | 2e-28 | ||
| 2rqk_A | 141 | Nmr Solution Structure Of Mesoderm Development (Mes | 7e-28 | ||
| 2kmi_A | 145 | Mesd(12-155), The Core Structural Domain Of Mesd Th | 8e-28 | ||
| 3ofh_A | 89 | Structured Domain Of Mus Musculus Mesd Length = 89 | 7e-25 | ||
| 3ofg_A | 95 | Structured Domain Of Caenorhabditis Elegans Bmy-1 L | 3e-14 |
| >pdb|3OFE|A Chain A, Structured Domain Of Drosophila Melanogaster Boca P41 2 2 Crystal Form Length = 91 | Back alignment and structure |
|
| >pdb|3OFF|A Chain A, Structured Domain Of Drosophila Melanogaster Boca P65 2 2 Crystal Form Length = 90 | Back alignment and structure |
|
| >pdb|2KGL|A Chain A, Nmr Solution Structure Of Mesd Length = 195 | Back alignment and structure |
|
| >pdb|2I9S|A Chain A, The Solution Structure Of The Core Of Mesoderm Development (Mesd) Length = 97 | Back alignment and structure |
|
| >pdb|2RQK|A Chain A, Nmr Solution Structure Of Mesoderm Development (Mesd) - Closed Conformation Length = 141 | Back alignment and structure |
|
| >pdb|2KMI|A Chain A, Mesd(12-155), The Core Structural Domain Of Mesd That Is Essential For Proper Folding Of Lrp56 Length = 145 | Back alignment and structure |
|
| >pdb|3OFH|A Chain A, Structured Domain Of Mus Musculus Mesd Length = 89 | Back alignment and structure |
|
| >pdb|3OFG|A Chain A, Structured Domain Of Caenorhabditis Elegans Bmy-1 Length = 95 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus} Length = 97 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 5e-48
Identities = 53/94 (56%), Positives = 73/94 (77%)
Query: 68 DPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIF 127
PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V RAIF
Sbjct: 4 KPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIF 63
Query: 128 LFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 64 MLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGK 97
|
| >2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A Length = 195 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 9e-45
Identities = 54/101 (53%), Positives = 74/101 (73%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 59 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 118
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 119 AIFMLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGKGGGS 159
|
| >2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A Length = 195 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 6e-07
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 686 KEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQI 743
P KKD+ YNDAD+ RL +QWE D +HK P+ +D ++
Sbjct: 4 PGEATPPPRKKKDIRDYNDADMARLLEQWEKD---DDIEEGDLPEHKRPSAPIDFSKL 58
|
| >2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A Length = 195 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 450 KEGEEKPKWAKKDLSFYNDADLERLFDQWE 479
P KKD+ YNDAD+ RL +QWE
Sbjct: 4 PGEATPPPRKKKDIRDYNDADMARLLEQWE 33
|
| >3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A* Length = 90 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 1e-44
Identities = 68/90 (75%), Positives = 81/90 (90%)
Query: 71 SLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFK 130
K KKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERYMV+D+RAIFLFK
Sbjct: 1 GSQKHMKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFK 60
Query: 131 DGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
DG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 61 DGTQAWDAKDFLIEQERCKGVTIENKEYPG 90
|
| >3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus} Length = 89 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 1e-43
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 74 KLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGS 133
++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V RAIF+ +DGS
Sbjct: 3 HMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGS 62
Query: 134 QAWDAKDYLVQQERCKSVTIENKVYPG 160
AW+ KD+LV Q+RC VT+E ++YPG
Sbjct: 63 YAWEIKDFLVSQDRCAEVTLEGQMYPG 89
|
| >3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular chaperone, protein folding, YWTD propeller, LDLR; HET: MSE; 1.37A {Caenorhabditis elegans} Length = 95 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-39
Identities = 38/93 (40%), Positives = 63/93 (67%), Gaps = 6/93 (6%)
Query: 74 KLSKKGRTLMVFVSVDGDPTRDEA------ESITKLWQTSLFNSHIQAERYMVEDSRAIF 127
+SKKG+TLM+FV V D + E T++WQ+ L+N+H+ + ++++D+RAIF
Sbjct: 3 HMSKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIF 62
Query: 128 LFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
+FK+G QA++AK +L++QE VTIE + + G
Sbjct: 63 MFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 95
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-11
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV 298
Q ++ + + + + Q+ G +SD GR+ ++L + +++ L+ S+
Sbjct: 38 QSVMGAYLLT-----YGVSQLF----YGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88
Query: 299 YVIFFVRILLGLFK-HTQVLCKAYISDIC--VDSTKAFSQLMMVTFLGFFIGPAIGGHVI 355
V+ + G+ V+ + D+ A S L M + + P IGG +
Sbjct: 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148
Query: 356 HY 357
Sbjct: 149 TM 150
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 10/207 (4%)
Query: 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
F F P +L +S G I + SL ++ P G LSD
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 273 GRKTILLT----CLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV-----LCKAYIS 323
G + LL L ++ + Y I I+ G++ +A+I
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 324 DICVDSTKAFSQLMMVTFLGFFIGPAIGGHVI-HYENGFFYICCMTSALFVVNFVYTYWV 382
+ S F + M +G+ +G +I G + F++ + + V +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 383 VTDVKKYPTRTSLSPNGLESSDVNPLL 409
+ + L
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELF 217
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 7/143 (4%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301
G + + LL + + G K LL V + S +
Sbjct: 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV 315
Query: 302 FFVRILLGL-FKHTQVLCKAYISDICVDSTKAFSQLMMVTF---LGFFIGPAIGGHVIH- 356
++ L V C YI+ A L+ F L + G++
Sbjct: 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375
Query: 357 --YENGFFYICCMTSALFVVNFV 377
++ + + + +++
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVF 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 90/635 (14%), Positives = 193/635 (30%), Gaps = 166/635 (26%)
Query: 56 LSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGD---PTRDEAESITKLWQTSLFNSH 112
LS F DN D + + + K + + D ++D +L+ T L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 113 IQAERYMVEDSRAIFLF-------KDGSQAWDAKDYLVQQER-CKSVTIENK--VYPGKL 162
++++ E R + F + + + Y+ Q++R + K V +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 163 TKEIKSLLGQQERCKSVTIENKVYPGK--LTKEVSVGLTIIPTFTMGSLTPHKISFICFL 220
+++ L + K+V I+ + GK + +V + + KI ++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLK 190
Query: 221 DLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLT 280
+ + ++ ++ L Q + N+T + S+ L+I S L L K
Sbjct: 191 NCNSPETVLEMLQK-LLYQ-IDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKP-YEN 245
Query: 281 CL----------------FTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISD 324
CL +C + LL +K V T L A +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQV---------------TDFLSAATTTH 288
Query: 325 ICVD-STKAFSQLMMVTFLGFFIG------P--AIGGHVIHYENGFFYICCMTSALFVVN 375
I +D + + + + L ++ P + + + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--------LSIIAESIRDG 340
Query: 376 FV-YTYWVVTDVKKYPTRTSLSPNGLESS--------------DVN-P--LLQ------- 410
+ W + K T S N LE + + P LL
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 411 EEIDMDMGND--RPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYND 468
+ M + N + ++++ I + +L L + E + + + YN
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYN- 454
Query: 469 ADLERLFDQWEVSFQVP----FWQL--HLVSRVYAFCFPHETKHKDPNLNLDLEHI---V 519
+ + FD ++ + + HL + E + LD + +
Sbjct: 455 --IPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFLEQKI 507
Query: 520 KPPAFSLE-SSDVNPLLQEEIDMDMGNDRPRDIKE-ERHVEKDSRARVSLSQSSFLTYCR 577
+ + + S + LQ +K + ++ + L +
Sbjct: 508 RHDSTAWNASGSILNTLQ-------------QLKFYKPYICDNDPKYERLVNA------- 547
Query: 578 ETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVL 612
++ FL + +L S Y +L
Sbjct: 548 --------------ILDFLPKIEENLICSKYTDLL 568
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ + FL A +L L + L+NF G I S F I G L
Sbjct: 31 LCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS 89
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT------QVLCKAYISDICV 327
K ++T LF + L + + ++ + L+GLF + +++ +
Sbjct: 90 YKAGIITGLFLYALGAAL--FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147
Query: 328 DSTKAFSQLMMVTF--LGFFIGPAIGGHVI 355
+S+ F + TF G I G +I
Sbjct: 148 ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 242 LSNFTIGAIASTFS----LLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK- 296
S +G S S + I G +SD + L L L +G
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIM----GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114
Query: 297 ---SVYVIFFVRILLGLF 311
S+ V+F + L G F
Sbjct: 115 ATSSIAVMFVLLFLCGWF 132
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 822 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.85 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.84 | |
| 2i9s_A | 97 | MESD, mesoderm development candidate 2; ferredoxin | 99.73 | |
| 3ofg_A | 95 | BOCA/MESD chaperone for YWTD beta-propeller-EGF P; | 99.57 | |
| 3ofh_A | 89 | LDLR chaperone MESD; molecular chaperone, protein | 99.57 | |
| 3off_A | 90 | LDLR chaperone BOCA; MESD, molecular chaperone, pr | 99.56 | |
| 2kgl_A | 195 | Mesoderm development candidate 2; MESD, LRP5/6, ch | 99.55 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.28 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.21 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.18 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.84 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.46 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.23 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=270.20 Aligned_cols=383 Identities=13% Similarity=0.096 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.........+.+|.+.+ ++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777776554 47 999999999999999999999999999999999999999999999999999
Q ss_pred Hh----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHH
Q psy3157 293 GL----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG-FFYI 364 (822)
Q Consensus 293 ~~----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w~~~ 364 (822)
++ +++++.++++|++.|++.+. .+...+++.|++|++ ++++|+...+..+|.++||++++++.+.. | ||+.
T Consensus 110 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~ 188 (451)
T 1pw4_A 110 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAA 188 (451)
T ss_dssp HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTC
T ss_pred HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 99 99999999999999999986 888999999999865 45689999999999999999999988876 7 9999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy3157 365 CCMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLV 444 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 444 (822)
|++.+++.++..++.++++||+++.......+..... ..
T Consensus 189 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------------------- 227 (451)
T 1pw4_A 189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------YP---------------------------------- 227 (451)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-------cc----------------------------------
Confidence 9999998888777767777776543221110000000 00
Q ss_pred HHHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCc
Q psy3157 445 SCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAF 524 (822)
Q Consensus 445 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (822)
.+.++ +.
T Consensus 228 ------------------------~~~~~-------------------------------~~------------------ 234 (451)
T 1pw4_A 228 ------------------------DDYNE-------------------------------KA------------------ 234 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------ccchh-------------------------------hh------------------
Confidence 00000 00
Q ss_pred ccCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhh
Q psy3157 525 SLESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLF 604 (822)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 604 (822)
+++. +..+...... ...+.++.+.+..++..+....+
T Consensus 235 ----------------------------~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
T 1pw4_A 235 ----------------------------EQEL---------TAKQIFMQYV------LPNKLLWYIAIANVFVYLLRYGI 271 (451)
T ss_dssp -----------------------------------------CCTHHHHHHT------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hccc---------ccccchHHHH------HcCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000000000 01123466667777777777788
Q ss_pred hhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-ec-cc--CccchhHHHHHHHH-HHHHHHHhhh--HHHHHHH
Q psy3157 605 YSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-ID-SR--NSYSSLYYSFILLT-VSILALYVSV--NLYLFVL 677 (822)
Q Consensus 605 ~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~-~~--~~~~~l~~~~~l~~-~~~~~l~~~~--~~~~~~~ 677 (822)
..++|.|+++.+|+++.++|++.++.+++++++.++.| +. +. ++++.+..+.++.. ++++++.+.+ +.+...+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 88999999998999999999999999999999999999 43 33 44444444444443 4555444432 3333333
Q ss_pred HHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccch
Q psy3157 678 LLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSN 757 (822)
Q Consensus 678 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 757 (822)
...+.+.+..+. + + ....+ ..+..+.+...+
T Consensus 352 ~~~~~g~~~~~~----~-------------------------------~-------------~~~~~-~~~~~~~~~~g~ 382 (451)
T 1pw4_A 352 CMIVIGFLIYGP----V-------------------------------M-------------LIGLH-ALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHTHH----H-------------------------------H-------------HHHHH-HHHTSCTTHHHH
T ss_pred HHHHHHHHHhch----H-------------------------------H-------------HHHHH-HHHHhchhhhhh
Confidence 333322111000 0 0 00001 111223232226
Q ss_pred hhhHHHHHhhh-hhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhh
Q psy3157 758 ISGIYNSLTSI-AKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTT 806 (822)
Q Consensus 758 ~~Gi~~~~~~l-g~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~ 806 (822)
++|+.+++..+ |.++||.++|++.|.+| |...|++.+++.++++++.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999875 6667888777777776663
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=257.31 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++..+......+.+|. +.+++|++..+.|++.+++.++.+++++++|+++||+|||++++++.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777776 556799999999999999999999999999999999999999999999999999999
Q ss_pred ---HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH-hcccc-----
Q psy3157 293 ---GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI-HYENG----- 360 (822)
Q Consensus 293 ---~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~-~~~~g----- 360 (822)
+++++++.++++|++.|++.|. .+...++++|++|++.| ++++.+.+.++|.++||++++.+. +....
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 8889999999999999999986 88899999999997655 589999999999999999999998 55422
Q ss_pred -------------------hHHHHHHHHHHHHHHHHHH
Q psy3157 361 -------------------FFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 361 -------------------w~~~f~i~~~~~li~~ll~ 379 (822)
||+.|++.+++.++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999988887766665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=241.36 Aligned_cols=172 Identities=14% Similarity=0.209 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQ-----VLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~ 286 (822)
.+.+..++..+......+.++.|+.+. +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 455667777777777888888899887 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--h--HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 287 VSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--K--AFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 287 i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
++.++++++++++.++++|++.|++.|. .+...++++|++|++. | ++++++.+.++|.++||++++.+.+.. ||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~ 175 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GY 175 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hH
Confidence 9999999999999999999999999986 8899999999998754 5 467788999999999999999999886 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 362 FYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
|+.|++.+++.++..++..+..++
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999888777666654444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=238.47 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.........|.+|.+. +++|.+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 455667777777888888888754 5699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.+++.|++.|++.+. .+...+++.|++|+ |.+++++.+.+..+|.++||.+++++.+.. +||+.|++.+
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~ 161 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHH
Confidence 9999999999999999999986 88889999999975 456799999999999999999999998876 9999999988
Q ss_pred HHHHHHHHHHhhhcccCC
Q psy3157 370 ALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~ 387 (822)
++.++..++..+.+||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHCcccC
Confidence 888777665555566544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=218.52 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH------------------hhchHHHHHHHH
Q psy3157 244 NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG------------------LYKSVYVIFFVR 305 (822)
Q Consensus 244 ~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~------------------~a~s~~~l~i~r 305 (822)
..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.++.++++ +++|++.++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999988 478999999999
Q ss_pred HHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHH
Q psy3157 306 ILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-------NGFFYICCMTSALFVVN 375 (822)
Q Consensus 306 ~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-------~gw~~~f~i~~~~~li~ 375 (822)
+++|+|.|. .+...++++|+.|++.| ..++.+.+..+|.++++.++..+.... .+||+.+.+.++..++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 999999997 89999999999998665 478888888999999988888776432 25777777666655554
Q ss_pred HHHHhhhcccCCC
Q psy3157 376 FVYTYWVVTDVKK 388 (822)
Q Consensus 376 ~ll~~~~~~e~~~ 388 (822)
.+ ..++.||+++
T Consensus 214 ~~-~~~~~peSp~ 225 (491)
T 4gc0_A 214 LM-LLYTVPESPR 225 (491)
T ss_dssp HH-HGGGSCCCHH
T ss_pred hh-hhhcCCCChH
Confidence 44 3567788764
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=218.85 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVL------LSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTC 285 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g------~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~ 285 (822)
.+.+..++..++.+...+.++.|+.+++| ++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45667777777888888899999988899 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhc-hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--H---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 286 IVSYLLLGLYK-SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--A---FSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 286 ~i~~ll~~~a~-s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a---~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+++.++.++++ +++.++++|++.|++.+. .+...+++.|++|++.| + ++++..+.++|.++||.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998 999999999999999986 88999999999997655 3 44488899999999999999998876
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q psy3157 359 NGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 359 ~gw~~~f~i~~~~~li~~ll~~ 380 (822)
||++.|++.+++.++..++.+
T Consensus 176 -g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 176 -GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888766655533
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-22 Score=224.46 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH-
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL- 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll- 291 (822)
.+....++...+.+...|++|.|+++++|++..+.|++.+++.+++.++++++|+++||+|||++++++.++++++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~ 90 (417)
T 2cfq_A 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4555556666677778899999998889999999999999999999999999999999999999999888776553221
Q ss_pred --HHhhchHH-HHHHHHHHhhcccch-hhHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 292 --LGLYKSVY-VIFFVRILLGLFKHT-QVLCKAYISDICVD----STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 292 --~~~a~s~~-~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~----~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
..++.... .++..+++.|++.|. .+.....+.++.++ +++++|....+..+|.+++|.+++++.+. +|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~ 168 (417)
T 2cfq_A 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQF 168 (417)
T ss_dssp HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhH
Confidence 12222211 234456666666553 33333334444432 23346777777889999999999999874 7999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3157 364 ICCMTSALFVVNFVY 378 (822)
Q Consensus 364 ~f~i~~~~~li~~ll 378 (822)
.|++.+++.++..++
T Consensus 169 ~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 169 VFWLGSGCALILAVL 183 (417)
T ss_dssp HHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998877665444333
|
| >2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=145.39 Aligned_cols=96 Identities=54% Similarity=1.030 Sum_probs=92.8
Q ss_pred CCCChhHHHhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccc
Q psy3157 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQ 144 (822)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (822)
|+.|||+++++||||+++|+||..+++|+++|.+.++..||.+|.|||.+.++|..+++|++|++++|+++++.++.+.+
T Consensus 1 d~~~pe~llk~sKkGkt~M~FV~v~g~~s~~e~d~it~~WqtsL~Nnhi~~~ry~Id~~r~ifm~~DG~~a~E~kdFL~~ 80 (97)
T 2i9s_A 1 GPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVS 80 (97)
T ss_dssp CTTSCHHHHHHHCSCCCEEEEEECCSSSSHHHHHHHHHHHHHHHHHTTCSEECCEEETTEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhcCCCceEEEEEecCCCCHHHHHHHHHHHHHHHhhCCeeEEEEEEcCCEEEEEEcChHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCC
Q psy3157 145 QERCKSVTIENKVYPG 160 (822)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (822)
++++.+.+.+.+.+++
T Consensus 81 Q~e~~~vtie~q~y~g 96 (97)
T 2i9s_A 81 QDRCAEVTLEGQMYPG 96 (97)
T ss_dssp HSSSCEEECSSSCCSC
T ss_pred CcceeEEEEccEEcCC
Confidence 9999999999887765
|
| >3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular chaperone, protein folding, YWTD propeller, LDLR; HET: MSE; 1.37A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-16 Score=128.62 Aligned_cols=87 Identities=43% Similarity=0.822 Sum_probs=81.6
Q ss_pred hhhhcCceEEEEEeeCCCCChhhHH------HHHHHHhhhhcccccccccccccCcceeEeecCCCCccccccccccccc
Q psy3157 74 KLSKKGRTLMVFVSVDGDPTRDEAE------SITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQER 147 (822)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (822)
++||||+++|+|+.+.++|+++|++ .++..||.+|.|||.+.+||..+++|+++++++|+++|+.++.+.++++
T Consensus 3 ~~sKKGktlMmFV~v~g~~t~~e~d~~~~~e~it~lWq~sL~NnHi~~qrf~I~d~raiFmf~DGsqAweakdfL~~Qd~ 82 (95)
T 3ofg_A 3 HMSKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEF 82 (95)
T ss_dssp --CCSSCCCEEEEEECCTTSTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEESSGGGHHHHHHHHHTSTT
T ss_pred ccccCCCeEEEEEEecCCCChhhhcccchHHHHHHHHHHHHhhcceeEEEEEecCCEEEEEEcChHHHHHHHHHHhcCcc
Confidence 6899999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCC
Q psy3157 148 CKSVTIENKVYPG 160 (822)
Q Consensus 148 ~~~~~~~~~~~~~ 160 (822)
+.+++.|.+.+++
T Consensus 83 ~~~VtiEgq~y~G 95 (95)
T 3ofg_A 83 VSEVTIEGQSFDG 95 (95)
T ss_dssp EEEEEEECCSSCC
T ss_pred eeEEEEeccccCC
Confidence 9999998887653
|
| >3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-16 Score=127.28 Aligned_cols=88 Identities=53% Similarity=1.036 Sum_probs=82.6
Q ss_pred HhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccccccccccc
Q psy3157 73 LKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVT 152 (822)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (822)
.++||||+++|+|+.+.++|+++|.+.++..||.+|.|||.+.+||..+++|++|++++|+++++.++.+.+++++.+.+
T Consensus 2 ~k~sKkgkt~M~FV~v~g~~t~~e~e~it~~WqtsL~Nnhi~~~ry~I~~dr~ifm~~DGs~awe~kdFL~~Q~~v~~vt 81 (89)
T 3ofh_A 2 SHMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAEVT 81 (89)
T ss_dssp --CCCCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCEEEEECSTTEEEEEESCGGGHHHHHHHHHTSTTEEEEE
T ss_pred CccccCCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCceEEEEEecCCEEEEEEcChHHHHHHHHHHHcCcceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCC
Q psy3157 153 IENKVYPG 160 (822)
Q Consensus 153 ~~~~~~~~ 160 (822)
.+.+.+++
T Consensus 82 iegq~y~g 89 (89)
T 3ofh_A 82 LEGQMYPG 89 (89)
T ss_dssp ETTEEECC
T ss_pred EeccCcCC
Confidence 88876653
|
| >3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=127.11 Aligned_cols=87 Identities=77% Similarity=1.248 Sum_probs=80.9
Q ss_pred HhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccccccccccc
Q psy3157 73 LKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVT 152 (822)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (822)
.++|||||++|+|+...++|+++|.+.++..||.++.|||.+.++|..+++|+++++++|+++++.++.+.+++++.+.+
T Consensus 3 ~k~sKKGktlMmFV~v~~~~t~~e~d~lt~lWqtsL~Nnhi~~~ry~Id~dr~ifmf~DGs~a~e~kdfL~~Q~~~~~vt 82 (90)
T 3off_A 3 QKHMKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVT 82 (90)
T ss_dssp ---CCTTCCEEEEEEESSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEESSGGGHHHHHHHHTTSTTEEEEE
T ss_pred cccccCCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCCEEEEEEcChHHHHHHHHHHhcCcceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCC
Q psy3157 153 IENKVYP 159 (822)
Q Consensus 153 ~~~~~~~ 159 (822)
.+.+.++
T Consensus 83 iE~q~y~ 89 (90)
T 3off_A 83 IENKEYP 89 (90)
T ss_dssp ETTEEEE
T ss_pred EeccCcC
Confidence 8876654
|
| >2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-15 Score=143.45 Aligned_cols=109 Identities=50% Similarity=0.916 Sum_probs=103.7
Q ss_pred cccccccccccCCCChhHHHhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCC
Q psy3157 54 KKLSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGS 133 (822)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (822)
|+..++|++++|..||+++++++|||+++|+||.++++++++|.+.++..||.++.|||.+..+|.++++|++|++++|+
T Consensus 48 Rp~pp~D~skldp~~pe~~lk~sKKGk~lMmFV~v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id~dr~iFm~~DGs 127 (195)
T 2kgl_A 48 RPSAPIDFSKLDPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGS 127 (195)
T ss_dssp CCCCSCCCCCSSSSCCSHHHHHCCCCSCCEEEEESSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEETTEEEEEEESCSH
T ss_pred cCCCCCCcccCCccCHHHHHHHhhcCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCCeEEEEeCchH
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccCCCCc
Q psy3157 134 QAWDAKDYLVQQERCKSVTIENKVYPGKL 162 (822)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (822)
++++.++.+..++++.+++.+...+++..
T Consensus 128 ~a~E~KdFLl~Q~e~~eVtiE~q~y~G~~ 156 (195)
T 2kgl_A 128 YAWEIKDFLVSQDRCAEVTLEGQMYPGKG 156 (195)
T ss_dssp HHHHHHHHHHHHSSEEEEECCSSSCCSSS
T ss_pred HHHHHHHHHhcCcceeEEEEcCEeccCCC
Confidence 99999999999999999999999887664
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-11 Score=133.84 Aligned_cols=169 Identities=13% Similarity=0.095 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GRKTILLTCLFTCI-VSY 289 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Grr~~l~~~~ll~~-i~~ 289 (822)
.+.+..++..........++|.|+++.+|.+..+.+++.+...++.+++.+++|+++||+ |||+.+.++.++.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 444555666666677778888888877899999999999999999999999999999999 99999888777766 666
Q ss_pred HHHHhh--chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHH-HHHHHHHHHHHHHhcccchHH
Q psy3157 290 LLLGLY--KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFL-GFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 290 ll~~~a--~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~~ 363 (822)
++..+. .+.+.+++..++.|++.+. .+....++.|.+|++ ++++|+.+....+ |..++|.++|.+.+.. ||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 414 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 414 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH
Confidence 666555 3677788888888988775 777889999999975 5568999999999 9999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy3157 364 ICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~ 382 (822)
.|++.+++.++..++.++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888887777665443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=129.75 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 226 SLIVPLVNNYLRTQVLL---SNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~---s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
......+|.|+.+.++. +....+++.++..++.+++.++.|+++||+|||+++.++.++.+++.++.++.++.+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33344567777665542 234567888888888899999999999999999999988888888877777778888887
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
+..++.+++.+. .+....++.|.+|++.|+ .++ ++.+..+|.++||.++|++.+.. |+...|.+.+++.++..++
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHH
Confidence 777777877664 566788999999987664 566 46778899999999999999876 8999999888888877776
Q ss_pred HhhhcccCC
Q psy3157 379 TYWVVTDVK 387 (822)
Q Consensus 379 ~~~~~~e~~ 387 (822)
.++..++.+
T Consensus 396 ~~~~~~~~~ 404 (417)
T 2cfq_A 396 SVFTLSGPG 404 (417)
T ss_dssp HTTSSCCSC
T ss_pred HHhhhcCCC
Confidence 555555533
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-10 Score=124.81 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNY-LRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll 291 (822)
...+..++..........+++.| +++.+|.+..+.+++.+...++.+++.+++|+++||+|||+++.++.++.+++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34444555555566667888888 88777999999999999999999999999999999999999999999999999888
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG-FFYICCMT 368 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w~~~f~i~ 368 (822)
..+.++.+.++.. ++.|++.+. .+...++..|.+|++ .++.++.. ...+|..++|.+.|.+.+.. | ++..|++.
T Consensus 342 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~ 418 (438)
T 3o7q_A 342 SAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAA-GNIPTAELIP 418 (438)
T ss_dssp HHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHH-TSSGGGGHHH
T ss_pred HHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHh-cchHHHHHHH
Confidence 8888877665544 778888875 788888989988865 34456555 56699999999999999987 6 99888876
Q ss_pred HHHHHHHHH
Q psy3157 369 SALFVVNFV 377 (822)
Q Consensus 369 ~~~~li~~l 377 (822)
+++.++.++
T Consensus 419 ~~~~~~~~~ 427 (438)
T 3o7q_A 419 ALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-08 Score=109.54 Aligned_cols=162 Identities=9% Similarity=0.073 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----chHHHH
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-----KSVYVI 301 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-----~s~~~l 301 (822)
.+..+.+ ++.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.. .+...+
T Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 295 VVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 3333334 3444578888888888888888999999999999999999999998888877776665442 122222
Q ss_pred H-HHHHHhhcccchhhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHH
Q psy3157 302 F-FVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-----NGFFYICCMTSALFV 373 (822)
Q Consensus 302 ~-i~r~l~Gig~g~~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-----~gw~~~f~i~~~~~l 373 (822)
+ +..+..+++.+..+..+.+.+|.+|.+.| ++|+......+|.++++.+...+.+.. .++.+.|++.+++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 22223333334456778999999998766 477777778888888877766554321 145667888888888
Q ss_pred HHHHHHhhhcccCCCC
Q psy3157 374 VNFVYTYWVVTDVKKY 389 (822)
Q Consensus 374 i~~ll~~~~~~e~~~~ 389 (822)
+..++.++++||++.+
T Consensus 454 ~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 454 LAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHCCCCTTC
T ss_pred HHHHHHHheecCCCCC
Confidence 8888888999998754
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.2e-09 Score=120.20 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHHHHHHHH
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-----TCLFTCIVSYLLL 292 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-----~~~ll~~i~~ll~ 292 (822)
.++...........++.|..+.++.+....+++.+...++..++.++.|+++||+|||+... ++.++.+++.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM 371 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence 33334444445566777887777777667788888899999999999999999999986554 6666666666655
Q ss_pred Hhhc---------hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy3157 293 GLYK---------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG 360 (822)
Q Consensus 293 ~~a~---------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g 360 (822)
.+.. +.+.+++..++.|++.+. .+...+++.|.+|++ ++++|+.+....+|..+||.+++.+.+. +
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~ 449 (491)
T 4aps_A 372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--S 449 (491)
T ss_dssp HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--S
T ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 5532 667777888889999886 788899999999975 4568999999999999999999888765 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 361 FFYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 361 w~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
+.+.|++.+++.++..++.+++.++.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 450 EVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877777766655555543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-08 Score=107.65 Aligned_cols=153 Identities=9% Similarity=-0.054 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHH--
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFT-CIVSYL-- 290 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll-~~i~~l-- 290 (822)
..+..++..........++|.|+++.+|.+..+.+++.+...++..++.++.|++.||+|++. ..+..+ ..++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344455555566666777788888778999999999999999999999999999999998733 222222 222221
Q ss_pred HHHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy3157 291 LLGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICC 366 (822)
Q Consensus 291 l~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~ 366 (822)
.... .++.+.+++..++.|++.+. .+...+++.|.+|+ ++++.|+.+....+|..++|.+.+.+.+.. +|...++
T Consensus 282 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~ 360 (375)
T 2gfp_A 282 IPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHH
T ss_pred HHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHH
Confidence 2222 23677777788889998886 78888999999884 455689999999999999999999998765 7877776
Q ss_pred HHH
Q psy3157 367 MTS 369 (822)
Q Consensus 367 i~~ 369 (822)
+.+
T Consensus 361 ~~~ 363 (375)
T 2gfp_A 361 MTL 363 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.8e-07 Score=103.27 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHhhhcccC------CCccceeeEEehhhhhccccceeee--eccc-CccchhHHHHH
Q psy3157 587 YWGIFLIKFLYALAMSLFYSNYISVLTHNFH------ANSQVTGYTVSFQGLVGSFSNVLIH--IDSR-NSYSSLYYSFI 657 (822)
Q Consensus 587 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g------~s~~~~g~l~si~gi~~~v~~i~~G--~~~~-~~~~~l~~~~~ 657 (822)
+|.+++..++..++...+..+++.|+++.+| +++.+.|++.++..++..++.++.| .|+. ++++.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3667777778888888888889999998889 9999999999999999999999999 5555 66666677777
Q ss_pred HHHHHHHHHHhhh-HHHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCc
Q psy3157 658 LLTVSILALYVSV-NLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNL 736 (822)
Q Consensus 658 l~~~~~~~l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (822)
+.+++.+++.+.. +.+.+.+..++.+...+. ..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~-------------------------------------------- 128 (524)
T 2xut_A 94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGG-IKP-------------------------------------------- 128 (524)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHT-THH--------------------------------------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccc-cch--------------------------------------------
Confidence 7777777777766 666555544443321111 000
Q ss_pred cccchhhhhhhcccCcccc--chhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 737 NLDLGQIFAIQKCQGDVFG--SNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 737 ~~~~~~~~~~~~~~g~~~~--~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
....+..+....++.+ ...+|+.+...++|.++||+++|++.+..+ |...|++.+++.++++++
T Consensus 129 ---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 129 ---LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp ---HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHH
Confidence 0000111111222222 124555999999999999999999998754 666777777766666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 822 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-15 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-11 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 75.6 bits (184), Expect = 6e-15
Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 9/181 (4%)
Query: 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
F F P +L +S G I + SL ++ P G LSD
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF---------KHTQVLCKAYIS 323
G + LL + +V + ++ ++ + ++ + +A+I
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 324 DICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
+ S F + M +G+ +G +I G + N F + AL + ++
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 384 T 384
Sbjct: 191 A 191
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 63.9 bits (154), Expect = 3e-11
Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 12/186 (6%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
+L +L +P + + S +G S S+ S +G +SD +
Sbjct: 35 AAYYLVRKNFALAMPYL-----VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89
Query: 276 TILLTCLFTCIVSYLLLGLYK----SVYVIFFVRILLGLFKHTQVLCK-AYISDICVDST 330
L L L +G S+ V+F + L G F+ +
Sbjct: 90 VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE 149
Query: 331 KA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388
+ S +G I P + + + N + M + ++ ++ + ++ D +
Sbjct: 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209
Query: 389 YPTRTS 394
Sbjct: 210 SCGLPP 215
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 822 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.13 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.3e-27 Score=261.74 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=135.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHhhc
Q psy3157 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY----KSVYVIFFVRILLGL 310 (822)
Q Consensus 235 ~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a----~s~~~l~i~r~l~Gi 310 (822)
+++ ++|+|.+++|++.+++.++++++++++|+++||+|||+++.++.++.+++.++++++ ++++.++++|++.|+
T Consensus 50 ~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 50 YLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128 (447)
T ss_dssp HTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence 455 489999999999999999999999999999999999999999999999999988775 477889999999999
Q ss_pred ccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3157 311 FKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 311 g~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~ 387 (822)
+.|. .+...++++|++|++.| ++|+++.+..+|.+++|++++.+.....+||+.|++.+++.++..++.+++.++++
T Consensus 129 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence 9986 88999999999997554 68999999999999999999988877668999999999888887777777776665
Q ss_pred CC
Q psy3157 388 KY 389 (822)
Q Consensus 388 ~~ 389 (822)
+.
T Consensus 209 ~~ 210 (447)
T d1pw4a_ 209 QS 210 (447)
T ss_dssp TT
T ss_pred hh
Confidence 44
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.8e-22 Score=218.30 Aligned_cols=179 Identities=17% Similarity=0.243 Sum_probs=134.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy3157 208 SLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIV 287 (822)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i 287 (822)
..+.+.+.+..++..+..+...|.+|.|+++++|+|..++|++.+++.++..++++++|+++||+|||++++++.++..+
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44556777888888888999999999999998999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhchHHHH----HHHHHHhhcccch-hhHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 288 SYLLLGLYKSVYVI----FFVRILLGLFKHT-QVLCKAYISDICVD----STKAFSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 288 ~~ll~~~a~s~~~l----~i~r~l~Gig~g~-~~~~~~~i~e~~p~----~~ra~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+.++..+..+.... ++.+++.+.+.+. .........+..++ +.+..+........+..+||.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 164 (417)
T d1pv7a_ 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI- 164 (417)
T ss_dssp THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-
Confidence 88888877655443 3444555544443 33333333333322 33456777788889999999999999876
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 359 NGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 359 ~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
+|++.++.......+..++..+..++.+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 165 -NNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred -cccccccchhhHHHHHHHHHHHHhccccc
Confidence 56666666666666666655666655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=9.5e-11 Score=125.68 Aligned_cols=146 Identities=13% Similarity=0.063 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHH
Q psy3157 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKA 320 (822)
Q Consensus 242 ~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~ 320 (822)
.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+. .+...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888889999999999999999999999999999999999999999999999999999999986 888899
Q ss_pred HHHHhccccchH--HHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3157 321 YISDICVDSTKA--FSQL-MMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388 (822)
Q Consensus 321 ~i~e~~p~~~ra--~g~~-~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll~~~~~~e~~~ 388 (822)
++.|.+|++.|+ .|+. +....+|..+||+++|++.+.. ||+++|++.+++.++..++..+.++++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999986654 6654 4567899999999999999987 99999999998888887776777665443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.5e-10 Score=126.78 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH--
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYL-- 290 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~l-- 290 (822)
.+.+..++..........+.+.|+.+.++.+..+.++..+...++.+++.+++|+++||++|++......+...+..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (447)
T d1pw4a_ 253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 332 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHH
Confidence 344455555556666777888888888999999999999999999999999999999999987644433332222222
Q ss_pred -HHHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHH-HHHHHHHHHHHHHhcccchHH
Q psy3157 291 -LLGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFL-GFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 291 -l~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~~ 363 (822)
+... ..+.+..+++.++.|++.+. .+....+..|.+|++.| ++|+.+....+ |.+++|++.|++.+.. ||+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~ 411 (447)
T d1pw4a_ 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 411 (447)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH
Confidence 2222 35677777788888888765 77788899999998655 57887777666 5678999999999987 9999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy3157 364 ICCMTSALFVVNFVYTYWVVT 384 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~~~ 384 (822)
.|++.+++.++..++..++.+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 412 GFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998888877777666544443
|