Psyllid ID: psy317

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MNPDSLESSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHcccEEEEEcccHHHHHHHHccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHcHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
mnpdslessiwdsmdpkktpltrmqISNGMMVLAAMFNQSQAGSCFISEILDtlglqehkttmtsnlsggqKKRLSIALElvnnppimffdeptsplhkaeftpkyerkvdtkvdytgnrtqNLQQTIRNEVCLISD
Flexible Loop (DISEMBL)
mnpdslessiwdsmdpkkTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTtmtsnlsggqkKRLSIALELVNNPPIMFFDEPTsplhkaeftpkyerkvdtkvdytgnrtqnlqqtirnevclisd
Low Complexity Region (SEG)
MNPDSLESSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Disordered region (IsUnstruct)
*************************ISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE****************LSIALELVNNPPIMFFD**********************VDYT**********IRNEVCL***
Disordered Region (DISOPRED)
****SLESSIWDSMDPKKTPLTRMQISNGMMVLAA**********FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Disordered Region (DISEMBL)
*********IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Disordered Region (DISPRO)
**PDSLESSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPDSLESSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCLISD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q9H172	646	ATP-binding cassette sub-	yes	N/A	0.620	0.131	0.471	1e-14
P45844	678	ATP-binding cassette sub-	no	N/A	0.583	0.117	0.512	2e-14
Q64343	666	ATP-binding cassette sub-	no	N/A	0.583	0.120	0.512	2e-14
Q8RI39	376	Spermidine/putrescine imp	yes	N/A	0.372	0.135	0.470	7e-08
Q9MAG3	1109	ABC transporter G family	yes	N/A	0.394	0.048	0.406	1e-07
Q7PC81	1390	ABC transporter G family	no	N/A	0.605	0.059	0.343	2e-07
A0LM36	715	Macrolide export ATP-bind	yes	N/A	0.583	0.111	0.421	2e-07
O65934	865	ABC transporter ATP-bindi	no	N/A	0.445	0.070	0.409	2e-07
Q04F14	350	Methionine import ATP-bin	yes	N/A	0.357	0.14	0.530	2e-07
Q8G5P8	401	Methionine import ATP-bin	yes	N/A	0.372	0.127	0.490	2e-07

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 12  DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQ 71
           D + P  T L  M +S  +     +  + +     ++EIL  LGL     T T+ LSGGQ
Sbjct: 150 DMLLPHLTVLEAMMVSANL----KLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQ 205

Query: 72  KKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           +KRL+IALELVNNPP+MFFDEPTS L  A
Sbjct: 206 RKRLAIALELVNNPPVMFFDEPTSGLDSA 234

May be involved in macrophage lipid homeostasis.
Homo sapiens (taxid: 9606)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 21  LTRMQISNGMMVLAAMFNQS--QAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
           L  + +   MMV A +  Q   +     + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct: 169 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIA 228

Query: 79  LELVNNPPIMFFDEPTSPLHKA 100
           LELVNNPP+MFFDEPTS L  A
Sbjct: 229 LELVNNPPVMFFDEPTSGLDSA 250

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 21  LTRMQISNGMMVLAAMFNQS--QAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
           L  + +   MMV A +  Q   +     + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct: 169 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLPCANTRTGSLSGGQRKRLAIA 228

Query: 79  LELVNNPPIMFFDEPTSPLHKA 100
           LELVNNPP+MFFDEPTS L  A
Sbjct: 229 LELVNNPPVMFFDEPTSGLDSA 250

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Mus musculus (taxid: 10090)

>sp|Q8RI39|POTA_FUSNN Spermidine/putrescine import ATP-binding protein PotA OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=potA PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +++ L  +GL+EH T   S LSGGQ++R+SIA  L+N P ++  DEP S L
Sbjct: 116 VNKYLKLVGLEEHSTKKVSQLSGGQQQRISIARALINKPGVLLLDEPLSAL 166

Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: 1

>sp|Q9MAG3|AB24G_ARATH ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 47  ISEILDTLGLQEHKTTMTS-----NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           +  I+D+LGLQ  ++++        +SGGQ+KR+++ LE+V  P ++F DEPTS L  A
Sbjct: 623 VERIIDSLGLQAVRSSLVGTVEKRGISGGQRKRVNVGLEMVMEPSVLFLDEPTSGLDSA 681

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 19/102 (18%)

Query: 40  SQAGSCFISEILDTLGLQEHKTTMT-----SNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           S+  S  ++E+L+T+ L+E K ++      S ++  Q+KRL+IA+ELV+NP I+F DEPT
Sbjct: 910 SETKSAIVNEVLETIELEEIKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPT 969

Query: 95  SPLHKAEFTPKYERKVDTKVDYTGNR-TQNLQQTIRNEVCLI 135
           + L             D +      R  +N+ +T R  VC I
Sbjct: 970 TGL-------------DARAAAIVMRAVKNIAETGRTVVCTI 998

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A0LM36|MACB_SYNFM Macrolide export ATP-binding/permease protein MacB OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=macB PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 21  LTRMQ-ISNGMMVL--AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSI 77
           L RM  + N MM L  A      Q G      +L  +GL EH     S LSGGQ++R++I
Sbjct: 97  LPRMSAVENVMMPLSYAGGGVSDQNGRERAGALLTRMGLGEHLDNEPSQLSGGQQQRVAI 156

Query: 78  ALELVNNPPIMFFDEPTSPLHKA 100
           A  L+NNP ++F DEPT  L  A
Sbjct: 157 ARALINNPSLLFADEPTGNLDSA 179

Part of the ABC transporter complex MacAB involved in macrolide export. Transmembrane domains (TMD) form a pore in the membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|O65934|ABC1_MYCTU ABC transporter ATP-binding/permease protein Rv1747 OS=Mycobacterium tuberculosis GN=Rv1747 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106
           ++ +L+ L + +H  T    LSGGQ+KR S+ALEL+  P ++  DEPTS L      P  
Sbjct: 434 VARVLEELEMSKHIDTRVDKLSGGQRKRASVALELLTGPSLLILDEPTSGL-----DPAL 488

Query: 107 ERKVDT 112
           +R+V T
Sbjct: 489 DRQVMT 494

Involved in the translocation of an unknown substrate across the membrane. Transmembrane domains (TMD) form a pore in the membrane and the ATP-binding domain (NBD) is responsible for energy generation. Required for virulence.

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q04F14|METN1_OENOB Methionine import ATP-binding protein MetN 1 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=metN1 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +GLQE+ +   S LSGGQK+R++IA  L NNP I+  DE TS L
Sbjct: 133 ELLKLVGLQEYVSAYPSQLSGGQKQRVAIARALANNPEILISDESTSAL 181

Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.

Oenococcus oeni (strain ATCC BAA-331 / PSU-1) (taxid: 203123)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q8G5P8|METN_BIFLO Methionine import ATP-binding protein MetN OS=Bifidobacterium longum (strain NCC 2705) GN=metN PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+L+ +GL EH     S LSGGQK+R+ IA  L  NP I+  DE TS L
Sbjct: 128 VNELLEFVGLSEHANKYPSQLSGGQKQRVGIARALATNPEILLADEATSAL 178

Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.

Bifidobacterium longum (strain NCC 2705) (taxid: 206672)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
242025233	685	ABC transporter, putative [Pediculus hum	0.372	0.074	0.941	2e-19
328718019	684	PREDICTED: ATP-binding cassette sub-fami	0.372	0.074	0.901	2e-18
193636433	707	PREDICTED: ATP-binding cassette sub-fami	0.372	0.072	0.901	2e-18
156550522	698	PREDICTED: ATP-binding cassette sub-fami	0.372	0.073	0.882	8e-18
307197262	643	ATP-binding cassette sub-family G member	0.372	0.079	0.882	8e-18
332031082	619	ATP-binding cassette sub-family G member	0.372	0.082	0.882	1e-17
307184774	704	ATP-binding cassette sub-family G member	0.372	0.072	0.882	1e-17
383861366	704	PREDICTED: ATP-binding cassette sub-fami	0.372	0.072	0.882	1e-17
66506366	703	PREDICTED: ATP-binding cassette sub-fami	0.372	0.072	0.882	1e-17
340728249	703	PREDICTED: ATP-binding cassette sub-fami	0.372	0.072	0.882	1e-17

>gi|242025233|ref|XP_002433030.1| ABC transporter, putative [Pediculus humanus corporis] gi|212518546|gb|EEB20292.1| ABC transporter, putative [Pediculus humanus corporis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ISEILDTLGLQEH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 181 ISEILDTLGLQEHRKTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 231

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718019|ref|XP_003246360.1| PREDICTED: ATP-binding cassette sub-family G member 4-like isoform 2 [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGLQEH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 157 IQEILETLGLQEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 207

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193636433|ref|XP_001950956.1| PREDICTED: ATP-binding cassette sub-family G member 4-like isoform 1 [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGLQEH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 180 IQEILETLGLQEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 230

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550522|ref|XP_001602320.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Nasonia vitripennis]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 168 IQEILETLGLAEHRKTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197262|gb|EFN78567.1| ATP-binding cassette sub-family G member 1 [Harpegnathos saltator]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 102 IQEILETLGLSEHRHTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 152

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031082|gb|EGI70668.1| ATP-binding cassette sub-family G member 1 [Acromyrmex echinatior]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 83  IQEILETLGLSEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 133

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184774|gb|EFN71088.1| ATP-binding cassette sub-family G member 1 [Camponotus floridanus]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 167 IQEILETLGLSEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 217

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861366|ref|XP_003706157.1| PREDICTED: ATP-binding cassette sub-family G member 1-like [Megachile rotundata]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 168 IQEILETLGLSEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66506366|ref|XP_397486.2| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis mellifera]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 168 IQEILETLGLSEHRQTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728249|ref|XP_003402440.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Bombus terrestris]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 47/51 (92%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I EIL+TLGL EH+ TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS L
Sbjct: 168 IQEILETLGLSEHRRTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSGL 218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0025683	699	CG3164 [Drosophila melanogaste	0.467	0.091	0.676	1.9e-16
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.562	0.092	0.555	3e-15
ZFIN|ZDB-GENE-080215-10	644	abcg4b "ATP-binding cassette,	0.583	0.124	0.548	6.3e-14
ZFIN|ZDB-GENE-070424-84	673	abcg1 "ATP-binding cassette, s	0.562	0.114	0.544	6.7e-14
UNIPROTKB|C9JKD9	257	ABCG1 "ATP-binding cassette su	0.394	0.210	0.666	1e-13
ZFIN|ZDB-GENE-050517-39	656	abcg4a "ATP-binding cassette,	0.583	0.121	0.536	1.1e-13
UNIPROTKB|E1BDU6	665	ABCG1 "Uncharacterized protein	0.583	0.120	0.512	1.8e-13
UNIPROTKB|P45844	678	ABCG1 "ATP-binding cassette su	0.583	0.117	0.512	1.8e-13
UNIPROTKB|F1PPV0	689	ABCG1 "Uncharacterized protein	0.583	0.116	0.512	1.9e-13
UNIPROTKB|J9P4X7	717	ABCG1 "Uncharacterized protein	0.583	0.111	0.512	2e-13

FB|FBgn0025683 CG3164 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 44/65 (67%), Positives = 51/65 (78%)

Query:    33 LAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92
             L+  F++ +  S  I +IL TL L EH+ TMT NLSGGQKKRLSIALELV+NPPIMFFDE
Sbjct:   153 LSKKFSKPEKHS-MIDDILLTLSLSEHRYTMTRNLSGGQKKRLSIALELVSNPPIMFFDE 211

Query:    93 PTSPL 97
             PTS L
Sbjct:   212 PTSGL 216

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 45/81 (55%), Positives = 56/81 (69%)

Query:    21 LTRMQISNGMMVLAAMF---NQ-SQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLS 76
             +  + +   MMV A +    N  S A    + EIL+T+GL+E   T+T NLSGGQ+KRLS
Sbjct:   234 IANLTVREAMMVAANLKLGKNMISYAKVVVVEEILETIGLKESVNTLTCNLSGGQRKRLS 293

Query:    77 IALELVNNPPIMFFDEPTSPL 97
             IALELVNNPP+MFFDEPTS L
Sbjct:   294 IALELVNNPPVMFFDEPTSGL 314

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-080215-10 abcg4b "ATP-binding cassette, sub-family G (WHITE), member 4b" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 45/82 (54%), Positives = 53/82 (64%)

Query:    21 LTRMQISNGMMVLAAM-FNQS-QAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +  N+S +     I EIL  LGL E   T T +LSGGQ KRL+IA
Sbjct:   151 LPHLSVQEAMMVSANLKLNESSEVKKELIKEILTALGLHECVHTRTVSLSGGQCKRLAIA 210

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   211 LELVNNPPVMFFDEPTSGLDSA 232

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 43/79 (54%), Positives = 52/79 (65%)

Query:    21 LTRMQISNGMMVLAAM-FNQSQAGSC-FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +   +   G    + EIL  LGL E   T TS+LSGGQ+KRL+IA
Sbjct:   176 LPHLTVQEAMMVSANLKLQEKDEGRREMVREILTALGLLECAKTRTSHLSGGQRKRLAIA 235

Query:    79 LELVNNPPIMFFDEPTSPL 97
             LELVNNPP+MFFDEPTS L
Sbjct:   236 LELVNNPPVMFFDEPTSGL 254

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|C9JKD9 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query:    47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
             + EIL  LGL     T T +LSGGQ+KRL+IALELVNNPP+MFFDEPTS L  A
Sbjct:   180 VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 233

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-39 abcg4a "ATP-binding cassette, sub-family G (WHITE), member 4a" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 44/82 (53%), Positives = 54/82 (65%)

Query:    21 LTRMQISNGMMVLAAM-FNQS-QAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  +     MMV A +  N++ +     ++EIL  LGLQE   T T +LSGGQ KRL+IA
Sbjct:   162 LPHLTTREAMMVSANLKLNENMEVKKELVNEILTALGLQECAQTRTISLSGGQCKRLAIA 221

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   222 LELVNNPPVMFFDEPTSGLDSA 243

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BDU6 ABCG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 42/82 (51%), Positives = 51/82 (62%)

Query:    21 LTRMQISNGMMVLAAM-FNQSQAGSC-FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +   +   G    + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct:   168 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIA 227

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   228 LELVNNPPVMFFDEPTSGLDSA 249

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P45844 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 42/82 (51%), Positives = 51/82 (62%)

Query:    21 LTRMQISNGMMVLAAM-FNQSQAGSC-FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +   +   G    + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct:   169 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIA 228

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   229 LELVNNPPVMFFDEPTSGLDSA 250

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0010033 "response to organic substance" evidence=IDA

GO:0009720 "detection of hormone stimulus" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0046983 "protein dimerization activity" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0034041 "sterol-transporting ATPase activity" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0033993 "response to lipid" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010872 "regulation of cholesterol esterification" evidence=ISS

GO:0034374 "low-density lipoprotein particle remodeling" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 42/82 (51%), Positives = 51/82 (62%)

Query:    21 LTRMQISNGMMVLAAM-FNQSQAGSC-FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +   +   G    + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct:   180 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIA 239

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   240 LELVNNPPVMFFDEPTSGLDSA 261

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|J9P4X7 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 42/82 (51%), Positives = 51/82 (62%)

Query:    21 LTRMQISNGMMVLAAM-FNQSQAGSC-FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
             L  + +   MMV A +   +   G    + EIL  LGL     T T +LSGGQ+KRL+IA
Sbjct:   220 LPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIA 279

Query:    79 LELVNNPPIMFFDEPTSPLHKA 100
             LELVNNPP+MFFDEPTS L  A
Sbjct:   280 LELVNNPPVMFFDEPTSGLDSA 301

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-15
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-15
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-14
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-14
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-13
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-13
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	9e-13
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-12
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-12
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-12
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-11
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-11
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-10
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-10
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-10
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-10
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-10
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-10
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-10
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	7e-10
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	8e-10
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-09
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-09
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-09
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-09
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-09
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-09
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-09
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-09
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-09
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-09
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-09
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-09
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-09
COG4598	256	COG4598, HisP, ABC-type histidine transport system	3e-09
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-09
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-09
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	5e-09
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	5e-09
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-09
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	6e-09
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	7e-09
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-08
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-08
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-08
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-08
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-08
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-08
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	4e-08
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	4e-08
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-08
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	4e-08
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	5e-08
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-08
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	5e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	5e-08
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	5e-08
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-08
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	7e-08
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	7e-08
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	8e-08
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	9e-08
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	9e-08
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-07
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-07
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-07
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-07
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-07
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-07
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-07
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-07
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	4e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	4e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	4e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-07
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	4e-07
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-07
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	5e-07
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	5e-07
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-07
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-07
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	7e-07
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	8e-07
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	8e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	9e-07
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	9e-07
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	9e-07
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-06
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	1e-06
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-06
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	1e-06
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-06
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-06
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-06
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-06
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-06
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-06
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	2e-06
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-06
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-06
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	3e-06
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-06
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-06
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-06
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-06
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	4e-06
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	5e-06
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	5e-06
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	5e-06
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	6e-06
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-06
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	7e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-06
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-06
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	8e-06
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	9e-06
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	9e-06
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	9e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-05
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-05
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-05
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-05
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-05
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-05
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-05
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-05
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-05
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-05
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-05
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-05
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-05
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-05
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	3e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	3e-05
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	4e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	4e-05
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-05
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	4e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	4e-05
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	5e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	5e-05
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	6e-05
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-05
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	6e-05
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	7e-05
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	7e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	7e-05
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	7e-05
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	7e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	8e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	8e-05
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	8e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-05
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	9e-05
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	9e-05
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-04
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	1e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-04
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-04
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-04
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	1e-04
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-04
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-04
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-04
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	2e-04
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-04
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-04
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-04
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	3e-04
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-04
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	3e-04
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-04
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	4e-04
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	4e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	4e-04
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-04
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	4e-04
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	4e-04
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	5e-04
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	5e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	5e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-04
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	6e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	6e-04
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	7e-04
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	8e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	8e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	8e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	9e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	0.001
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	0.001
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	0.001
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	0.001
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	0.001
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	0.001
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	0.001
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	0.001
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	0.001
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	0.001
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	0.001
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	0.001
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.001
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.002
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	0.002
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	0.002
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	0.002
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	0.002
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.002
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.002
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	0.002
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	0.002
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.002
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	0.002
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	0.002
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	0.002
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.002
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	0.003
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	0.003
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	0.004
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.004
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.004
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.004

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             LSGG++KR+SIALELV+NP ++F DEPTS L
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           I E+L+  GL++        LSGG K+RLSIAL L+++P ++  DEPTS
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTS 165

Length = 293

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 66.4 bits (163), Expect = 3e-14
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +  +L  LGL +        LSGG K++LS+A+ L+  P ++  DEPTS
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 6/57 (10%)

Query: 47  ISEILDTLGLQEHKTTMT------SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L  LGL++   T          LSGG++KRL+ A EL+ +PP++F DEPTS L
Sbjct: 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---PLHKAEF 102
           + E L+ +GL+  +      LSGGQK+R++IA  L  +P I+  DEPT+   P  + E 
Sbjct: 115 VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL +      S LSGGQ++R++IA  L N+P I+  DEPT  L
Sbjct: 123 ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNL 171

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 21  LTRMQISNGMMV--LAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78
           LT  Q  N  M   L    +  +A       +L+ +GL +H      NLSGGQK+R++IA
Sbjct: 97  LTARQ--NVQMALELQPNLSYQEARERAR-AMLEAVGLGDHLDYYPHNLSGGQKQRVAIA 153

Query: 79  LELVNNPPIMFFDEPTSPLHK 99
             LV+ P ++  DEPT+ L  
Sbjct: 154 RALVHRPKLVLADEPTAALDS 174

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 46  FISEILDTLGLQEHKTTM-TSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
              E L+ +GL +         LSGGQK+R++IA  L+  P ++  DEPT+
Sbjct: 69  RAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
              +L  L L   K     +LSGGQK+RL+IA  L++   ++ FDEPTS L
Sbjct: 107 AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL +      + LSGGQ++R++IA  L  NP +M FDEPTS L
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL +      + LSGGQ++R++IA  L  +P +M FDEPTS L
Sbjct: 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167

Length = 240

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L+ +GL+  +    + LSGG KKR+++A  L  +P ++ +DEPT+ L
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGL 167

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           + E+L+ + L +       +LSGG ++R+ IA  LV +P I+  DEPT+ L   E
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+L+ +GL +      + LSGGQK+R++IA  L NNP I+  DE TS L
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172

Length = 339

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E L+ +GL+E       NLSGGQK+R++IA  L   P I+  DEPT+ L
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169

Length = 235

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L+ +GL++      + LSGGQK+R+ IA  L NNP ++  DE TS L
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
           LSGGQ++R+++A  L+ NP ++  DEPTS L 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             L+ +GL +        LSGGQ++R++IA  L+  P ++  DEP + L
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+L+ +GL +      + LSGGQK+R++IA  L +NP ++  DE TS L
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171

Length = 343

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+LD +GL +    M + LSGGQ++R++IA  L   P +M FDE TS L
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           E+L+ +GL +        LS GQ++RL IA  L  +P ++  DEP + L+  E
Sbjct: 126 ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 63  MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             +NLSGGQ++RL++A  L++ P I+  DE TS L
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640

Length = 709

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +GL E      S LSGGQ++R++IA  L   P +M FDEPTS L
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167

Length = 240

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +   L+ +GL      + + LSGG+++R++IA  +VN+P I+  DEPT  L
Sbjct: 117 VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 16/29 (55%), Positives = 23/29 (79%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           LSGGQ++R++IA  L+ +PPI+  DE TS
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATS 125

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           I E+LD +GL E    +    SGG ++RL IA  LV+ P ++F DEPT
Sbjct: 112 IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             LSGGQ++R++IA  L+ +PPI+  DE TS L
Sbjct: 137 VKLSGGQRQRIAIARALLKDPPILILDEATSAL 169

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 47  ISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
             E+L+ LGL++       S LSGGQ++R++IA  L+NNP I+  DEPT 
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTG 171

Length = 226

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           ++E LD + L+ +     S LSGGQ++R++IA  LVN P ++  DEP   L  
Sbjct: 111 VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER 108
           + L+ +G+ +      S LSGGQ++R++IA  LV  P I+  DEP + L      P+  +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL-----DPESAK 184

Query: 109 KV 110
           KV
Sbjct: 185 KV 186

Length = 258

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 17/71 (23%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNL 124
           +NLSGGQ++RL IA  LV NP I+  DE TS L      P+ E+ +D           NL
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSAL-----DPETEKIID----------DNL 658

Query: 125 QQTIRNEVCLI 135
           ++  R   C+I
Sbjct: 659 RR--RGCTCII 667

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 15/33 (45%), Positives = 26/33 (78%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             +SGG+++R+SIA++L+ +P ++  DEPTS L
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 45  CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            ++ + L+ LGL        + LSGG+++R+ +A  L   PPI+  DEPTS L
Sbjct: 76  AYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             LSGGQ++RL IA  LV  P I+ FDE TS L
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           E+L+ +GL E       NLS GQ++RL IA  L   P ++  DEP + L+  E
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184

Length = 250

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           + E L+ +G+++ +      LSGGQK+R+ +A  L  NP ++  DEP +
Sbjct: 120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFT 168

Length = 254

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 51  LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           L  +G+ E      ++LSGGQ++R++IA  L   P +M FDEPTS L
Sbjct: 137 LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183

Length = 256

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 51.6 bits (125), Expect = 3e-09
 Identities = 15/29 (51%), Positives = 23/29 (79%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           LSGG K+RL++A  L+++P ++  DEPTS
Sbjct: 96  LSGGMKQRLALAQALLHDPELLILDEPTS 124

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 21/48 (43%), Positives = 34/48 (70%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           +SE+LD +GL+     + S LSGG+++R++IA  +VN P ++  DEPT
Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165

Length = 223

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  DE TS L  A
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           + E L+ +GL+         LSGGQ++R+++A  LV  P ++  DEP S L  
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169

Length = 352

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+K+R++IA  ++ NPPI+  DE TS L
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSAL 168

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R+++A  L  +P ++  DEPTS L
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSAL 131

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 51.8 bits (125), Expect = 7e-09
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 40  SQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---P 96
           S+A    + E L+ +GL E        LSGGQ++R+ +A  LV +P ++  DEP +   P
Sbjct: 106 SKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165

Query: 97  LHKAEF 102
             + + 
Sbjct: 166 KTQEDI 171

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L+ +GL+         LSGGQ++R+++A  L   P ++  DEP S L
Sbjct: 111 VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I+E+   L L E+        S G K++++IA  LV++P I+  DEPTS L
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164

Length = 245

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E L  LG    +    S+LSGG ++R+++A  L+  P ++  DEPT+ L
Sbjct: 135 AEEALLGLGF-PDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184

Length = 530

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 46   FISEILDTLGLQEHKTTMT-----SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            F+ E+++ + L   K  +      + LS  Q+KRL+IA+ELV NP I+F DEPTS L
Sbjct: 994  FVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050

Length = 1470

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL   +      LSGG ++R+++A  L  +P ++  DEP S L
Sbjct: 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LS  Q+KRL+I +EL   P I+F DEPTS L
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           NLSGGQ++R++IA  LV NP I+ FDE TS L
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILIFDEATSAL 624

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+   LGL+         LSGGQ++R+++A  LV  P +   DEP S L
Sbjct: 114 VKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164

Length = 338

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           +   L  +GL+         LSGG+++R++IA  +VN+PP++  DEPT
Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I E+LD +GL++         S G K+RL IAL L+ NP ++  DEPT+ L
Sbjct: 107 IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 32  VLAAMFNQ-SQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90
           V A++F +        I E+L T+GL + +  + + LS GQK+ L I + L  +P ++  
Sbjct: 112 VFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLL 171

Query: 91  DEPTSPLHKAE 101
           DEP + +  AE
Sbjct: 172 DEPVAGMTDAE 182

Length = 249

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 32  VLAAMFNQ-SQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90
           V A++F + S      I E+L+T+GL +    +   LS GQK+ L I + L+ +P ++  
Sbjct: 108 VFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLL 167

Query: 91  DEPTSPLHKAE 101
           DEP + +   E
Sbjct: 168 DEPVAGMTDEE 178

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L+ LGL+         LSGG+++R+ IA  L    PI+  DEPTS L
Sbjct: 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169

Length = 258

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           FI+ + D  G          NLSGGQ++RL+IA  L+ NPPI+  DE TS
Sbjct: 447 FIANLPD--GYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494

Length = 567

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R++IA  L  NP ++  DEPTS L
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSAL 176

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E L+ +GL+  +      LSGG ++R+ +A  L  +P I+  DE  S L
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L  +G    +   T  LSGG+KKR++IA  +   P ++  DEPT+ L
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQ +RL++A  L++   ++  DEPT+ L
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHL 487

Length = 559

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD-YTGNRT 121
             LSGG+++RL+IA  L+ +PPI+  DE TS L         E KV   +D     RT
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVET-----EAKVKAALDELMKGRT 522

Length = 588

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 63  MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             S LSGG +KR+++A  +  +P ++F DEPTS L
Sbjct: 142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGL 176

Length = 263

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             L+ +GL +        LSGGQ++R++IA  L   P ++  DEP + L
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +S  L  LGL+E +  +  +LSGG+KKR++IA  +   P ++  DEPT+ L
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168

Length = 277

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +LSGGQ++ +++A  L+ +PPI+  DEPTS
Sbjct: 601 SLSGGQRQAVALARALLRDPPILLLDEPTS 630

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGLQEHKTTMTSN-LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I+E+LD +GL         + LSGGQ++R++IA  L+  P ++  DEPTS L
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172

Length = 252

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E L+ +GL+ +     + LSGG ++R+ +A  L N+P I+  DE  S L
Sbjct: 147 EALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL 195

Length = 386

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 25  QISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN 84
             S   +  AA   ++ A S FISE+    G         S LSGGQK+R++IA  L+ N
Sbjct: 114 SCSFECVKEAA--QKAHAHS-FISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168

Query: 85  PPIMFFDEPTSPL 97
           P ++  DE TS L
Sbjct: 169 PQVLILDEATSAL 181

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 51  LDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           L  +GL +E+ T    NLSGG+ +R+SIA  L NNP ++  DEPTS L
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162

Length = 241

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++RL +A  L N P ++  DEPTS L
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSAL 172

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           S LSGGQK+R++IA  L+ NP I+  DE TS L
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L+ +GL +E        LSGGQ++R+ IA  L  NP ++  DEP S L
Sbjct: 89  VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140

Length = 268

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQ++R++IA  L++NP I+ FDE TS L
Sbjct: 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           I + L  +GL   +    + LS GQ++RL++A   ++  P+   DEPT+ L KA
Sbjct: 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA 161

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +GL+       S LSGG+++R++IA  LVNNP ++  DEPT  L
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL 176

Length = 233

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL+       S LSGG+++R++IA  LVN P ++  DEPT  L
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNL 172

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 43  GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEF 102
            +    E+ D LG       +  NLSGGQ++RL IA  L  +P I+ FDEPTS L     
Sbjct: 144 NAALWDEVKDRLG------DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197

Query: 103 TPKYERKVDTKVDYT-GNRTQNLQQTIR 129
               E   D K   T    T N+QQ  R
Sbjct: 198 ASIEELISDLKNKVTILIVTHNMQQAAR 225

Length = 265

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 49  EILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L+ +GL             LSGG ++R+ IA+ L   P ++  DEPT+ L
Sbjct: 135 ELLEQVGL-PDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185

Length = 539

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            LSGGQ++ +++A  L+N+PPI+  DEPTS +
Sbjct: 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAM 171

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L  +G++  +     +LSGGQKKR++IA  L   P I+  DEPTS L
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168

Length = 275

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 16/77 (20%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL-----HKAEFTPKYERKVDTKVDYT-GNR 120
           LSGGQ++RL IA  L   P ++  DEPTS L      K E     E   + K  YT    
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE-----ELIQELKKKYTIVIV 199

Query: 121 TQNLQQTIRNEVCLISD 137
           T N+QQ  R     ISD
Sbjct: 200 THNMQQAAR-----ISD 211

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++L+ L L+ +      +LSGGQ++R++IA  L+  P ++ FDEPT+ L
Sbjct: 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172

Length = 242

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I  +L+   L+       S+LSGG K+RL++A  L+N+P ++  DEPT+ L
Sbjct: 153 IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203

Length = 340

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNL 124
           +LSGGQ++RL IA  +   P ++  DEP S L         E  V+ K DYT    T N+
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNM 208

Query: 125 QQTIR 129
           QQ IR
Sbjct: 209 QQAIR 213

Length = 261

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+L+ +GL   +      LSGG ++R++IA  L   P ++  DEP   L
Sbjct: 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161

Length = 248

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 32  VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91
            L  +  +S  G+    E+ D L     K+ +   LSGGQ++RL IA  L   P ++  D
Sbjct: 118 KLDEIVEKSLKGAALWDEVKDRL----KKSAL--GLSGGQQQRLCIARALAVEPEVLLMD 171

Query: 92  EPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNLQQTIRNEVCLISD 137
           EPTS L     T K E  +   K DYT    T N+QQ  R     ISD
Sbjct: 172 EPTSALDPIS-TLKIEELIQELKKDYTIVIVTHNMQQASR-----ISD 213

Length = 250

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 46  FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVNNPP-IMFFDEPTSPL 97
           ++ E++  L ++ +   +       L+  Q+KRL+I +ELV  P  ++F DEPTS L
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +GL   +T+    LSGGQ++R++IA  L   P ++ FDEPTS L
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175

Length = 250

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+ D LG++E         S G +++++IA  LV++PP++  DEPT+ L
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+L+   L E         SGG ++RL IA  L++ P ++F DEPT+ L
Sbjct: 105 AEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+K+R++IA  ++ NPPI+  DE TS L
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSAL 430

Length = 497

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 5/53 (9%)

Query: 50  ILDTLGLQEHKTTMTSN-----LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++  LGL + + T+  N     +SGG++KR+SIA E++ NP ++  DEPTS L
Sbjct: 185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237

Length = 659

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 34  AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           AA     +     I+  L+ +GL          LS GQK+R+++A  LV+N PI   DEP
Sbjct: 98  AAFLGGEELD---IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154

Query: 94  TSPLHKA 100
           T+ L  A
Sbjct: 155 TAALDAA 161

Length = 207

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 8/55 (14%)

Query: 46  FISEI---LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           FIS +    DT  L E   T    LSGGQ++R++IA  ++ + PI+  DE TS L
Sbjct: 458 FISALPEGYDTY-LGERGVT----LSGGQRQRIAIARAILKDAPILLLDEATSAL 507

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I ++   +G++++      NLSGGQK+R++IA  L  NP I+ FDE TS L
Sbjct: 123 IDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173

Length = 271

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 47  ISEILDTLGLQEHKTTMTS-----------NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +   L  +GL++   +               LSGG+++RL++A  L+++ P+   DEPT 
Sbjct: 444 LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503

Query: 96  PL 97
            L
Sbjct: 504 GL 505

Length = 573

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           + E L  + L+E        LSGGQ++R+++A  LV  P I+  DEP S L K
Sbjct: 81  VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDK 133

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 47  ISEILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
             E+L+ +G+ + +  + S    LSGG ++R+ IA+ L  NP ++  DEPT+ L 
Sbjct: 131 AIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185

Length = 316

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 45  CFISEILD-----TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           C I+EI D      LG Q   +   S++SGGQK+R+++A  L+ +  ++  DE TS L
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           +S  LD +GL +        LSGG+++R+ IA  +VN P ++  DEPT  L  A
Sbjct: 118 VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171

Length = 222

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNL 124
           +LSGGQ++RL IA  L   P I+ FDEPTS L         +  ++ K DYT    T N+
Sbjct: 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213

Query: 125 QQTIR 129
           QQ  R
Sbjct: 214 QQAAR 218

Length = 258

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 11  WDSMDPKKTPLTRMQISNGMMVLAAMFNQS-QAGSCFISEILDTLGLQEHKTTMTSNLSG 69
           +D++DP  T      +   ++V    F  S  A    +  +L+   L+         LSG
Sbjct: 88  FDNLDPDFT------VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSG 141

Query: 70  GQKKRLSIALELVNNPPIMFFDEPTSPL 97
           G K+RL++A  LVN+P ++  DEPT+ L
Sbjct: 142 GMKRRLTLARALVNDPDVLVLDEPTTGL 169

Length = 306

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQ 125
           LSGGQ++RL IA  L  NP ++  DEPTS L         E  +  K  YT    T N+Q
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215

Query: 126 QTIR 129
           Q  R
Sbjct: 216 QAAR 219

Length = 259

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I  +L+   L+       + LSGG K+RL++A  L+N+P ++  DEPT+ L
Sbjct: 116 IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ +RL++A   + + P++  DEPT+ L
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 16/77 (20%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL-----HKAEFTPKYERKVDTKVDYT-GNR 120
           LSGGQ++RL IA  L   P ++  DEPTS L      K E     E   + K  YT    
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-----ELITELKKKYTIVIV 204

Query: 121 TQNLQQTIRNEVCLISD 137
           T N+QQ  R     +SD
Sbjct: 205 THNMQQAAR-----VSD 216

Length = 253

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  LGL++      S LSGGQ++R+SIA  L+N   ++  DEPT  L
Sbjct: 127 ELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Length = 648

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           I+E+L  LGL E        L+GG ++R+ IA  L++ P ++  DEPT
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           I E L  +GL   +      LS GQ++R+++A   ++  P+   DEP + L K 
Sbjct: 111 IWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164

Length = 209

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             LSGGQ++RL+IA  L+ + PI+  DE TS L
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSAL 500

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I E+L+ + L           S G K+RL IA+ L+N+P ++  DEPT+ L
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++L  L L+ +      +LSGGQ++R++IA  L+  P ++ FDEPT+ L
Sbjct: 124 KLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172

Length = 242

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           GL        + LSGG+++RL++A  L+ + PI+  DEPT  L
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           + E L  +GL   +    + LS GQ++R+++A  L++  P+   DEPT+ L KA
Sbjct: 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            + E+LD LGL        + LSGG+K+R+++A  L   P ++  DEP S L
Sbjct: 111 SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           + E+L+   +   + +  S+LSGG+++R+ IA  L  NP  +  DEP
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 51  LDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           L  +G+ E  +     +LSGGQ++R+SIA  L   P ++ FDEPTS L
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183

Length = 257

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNL 124
           LSGGQ++RL IA  +   P ++  DEP S L     T + E  +   K DYT    T N+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS-TGRIEELITELKQDYTVVIVTHNM 215

Query: 125 QQTIR 129
           QQ  R
Sbjct: 216 QQAAR 220

Length = 260

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
            +L+   +   + +   +LSGG+++R+ IA  L  NP  +  DEP
Sbjct: 122 ALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166

Length = 243

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++RL +A  L  NP I+  DEP S L
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I   L  +GL   +  +   LSGG+++R+++A  LV + P++  DEP + L
Sbjct: 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL---HKAEFT 103
             +++  LG++         LSGG+K+R++I   L+  P ++  DEP + L    K E  
Sbjct: 109 FDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168

Query: 104 PKYER 108
           P  ER
Sbjct: 169 PYLER 173

Length = 352

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+L+ +GL  E        LSGGQ++R++IA  L   P ++  DEP S L
Sbjct: 409 VAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460

Length = 539

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL-HKAEF 102
           S LSGGQK+R+SIA  ++ NP I+  DE TS L +K+E+
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616

Length = 1466

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 29  GMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88
           G++   AM  +++       E+L  LGL     T+  +LS  Q++ + IA  L  +  ++
Sbjct: 115 GLIDRKAMRRRAR-------ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167

Query: 89  FFDEPTSPLHKAE 101
             DEPT+ L   E
Sbjct: 168 ILDEPTAALTVKE 180

Length = 500

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPT 94
          LSGG+K RL++A  L+ NP ++  DEPT
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPT 98

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+ + L ++         LSGGQ++R+++   +V  P +   DEP S L
Sbjct: 111 VREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 39  QSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
           +S  G+    E+ D L       T  + LSGGQ++RL IA  L   P I+  DEPTS L 
Sbjct: 127 RSLRGAALWDEVKDRL------KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180

Query: 99  KAEFTPKYE------RKVDTKVDYTGNRTQ 122
            A  T + E      +KV T +  T N  Q
Sbjct: 181 PAS-TARIEDLMTDLKKVTTIIIVTHNMHQ 209

Length = 252

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E L+ +G+Q+ K    + LSGGQK+R++IA  +   P I+  DE TS L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171

Length = 279

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT 117
           SNLSGGQ++RL IA  L   P I+  DEPT+ +         E   + K +YT
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYT 200

Length = 253

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           LSGG+++RL IA  L+++ P++  DEPT  L  
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508

Length = 574

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+++ LGL+       S LSGG+ +R++IA  L+ +  + FFDEP+S L
Sbjct: 196 EVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244

Length = 591

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+++R++IA  LV NP I+  DEP S L
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSAL 160

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 33  LAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92
           L  +  +S  G+    E+ D L    H + ++  LSGGQ++RL IA  L  NP ++  DE
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRL----HDSALS--LSGGQQQRLCIARTLAVNPEVILMDE 175

Query: 93  PTSPLHKAEFTPKYERKV-DTKVDYTGN-RTQNLQQTIR 129
           P S L     T K E  + D K +YT    T N+QQ  R
Sbjct: 176 PCSALDPIA-TAKIEDLIEDLKKEYTVIIVTHNMQQAAR 213

Length = 253

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           + L  +GL +      + LSGGQK+R+++A  L++ P ++  DEP
Sbjct: 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160

Length = 257

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 19  TPLTRM--QISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS---NLSGGQKK 73
            PL  M       +  L  +  Q++A    I E L+ +GL + +  +      LSGG  +
Sbjct: 76  NPLFTMGNHAIETLRSLGKLSKQARA---LILEALEAVGLPDPEEVLKKYPFQLSGGMLQ 132

Query: 74  RLSIALELVNNPPIMFFDEPTSPLHKA 100
           R+ IAL L+  PP +  DEPT+ L   
Sbjct: 133 RVMIALALLLEPPFLIADEPTTDLDVV 159

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 38  NQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            QS+ G+     +L+ LGL +    + + LSGG+++R+++A      P ++F DEPT  L
Sbjct: 121 RQSRNGA---KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNL 177

Length = 228

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYT-GNRTQNL 124
           LSGGQ++RL IA  +  +P ++  DEP S L     T K E  + + K DYT    T N+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS-TAKVEELIHELKKDYTIVIVTHNM 205

Query: 125 QQTIR 129
           QQ  R
Sbjct: 206 QQAAR 210

Length = 250

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +GL+E++      LSGG ++R+ +A  L   P I+  DE  S L
Sbjct: 112 ELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            LSGGQK+R+++A  L   P  + FDEPT+ L
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 196

Length = 305

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL---HKAEFTPK 105
            +++ LG+      +   LSGG+K+R++I   L+++P ++  DEP + L    K E  P 
Sbjct: 114 RVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173

Query: 106 YER 108
            ER
Sbjct: 174 LER 176

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPT 94
           +SGG++KR+SIA  LV+   ++ +D  T
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNST 146

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+LD +GL   +      LSGGQ++R+++A  L  +P ++  DEP S L
Sbjct: 115 VAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +      +GL      +   LSGGQ++R+++A  LV   PI+  DEP S L
Sbjct: 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL 160

Length = 231

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +++ L  +GL +    + + LSGG ++R++IA  +   P ++  DEP S L
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
            I   +G+++    +   LSGGQ++R+++A  LV   PI+  DEP S L  A
Sbjct: 112 AIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163

Length = 232

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++L  +GL+  +      LSGG ++R+ IA  L   P ++  DEP   L
Sbjct: 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163

Length = 259

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
            +L+ +GL +  T   + LSGG+++R+++A      P ++F DEPT  L +A
Sbjct: 129 ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180

Length = 228

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           S LSGGQK+R++IA  LV  P ++  DE TS L
Sbjct: 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 47  ISEILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+L+ +G+ E +  + +    LSGGQ++R+ IA+ L N P ++  DEPT+ L
Sbjct: 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188

Length = 534

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 57  QEHKTTMTSN---LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTK 113
           +E K  +  N    SGGQ++R+ IA  L   P ++  DEPTS L     +   E  ++ K
Sbjct: 135 KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194

Query: 114 VDYTGNR-TQNLQQTIR 129
             YT    T NLQQ  R
Sbjct: 195 HQYTFIMVTHNLQQAGR 211

Length = 251

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 51   LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
            + +LGL  +   +    SGG K++LS A+ L+  PP++  DEPT+
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 32  VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91
           VL  +  +S   +    E+ D L    H + ++  LSGGQ++RL IA  L   P ++  D
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRL----HSSALS--LSGGQQQRLCIARTLAMKPAVLLLD 189

Query: 92  EPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQQTIR 129
           EP S L         E   + K +Y+    T N+QQ +R
Sbjct: 190 EPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALR 228

Length = 268

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV-DYTGN-RTQN 123
           +LSGGQ++RL IA  +  +P ++  DEP S L     T K E  ++    +YT    T N
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA-TSKIEDLIEELAEEYTVVIVTHN 238

Query: 124 LQQTIRNEVCLISD 137
           +QQ  R     ISD
Sbjct: 239 MQQAAR-----ISD 247

Length = 285

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E L  + L+E        LSGGQ++R++IA  +VN P ++  DE  S L
Sbjct: 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175

Length = 375

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 59  HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTG 118
           HK+ +T  LSGGQ++RL IA  +   P I+  DEP S L         E   + K +YT 
Sbjct: 158 HKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTI 215

Query: 119 -NRTQNLQQTIRNEVCLISD 137
              T N+QQ  R      SD
Sbjct: 216 IIVTHNMQQAAR-----ASD 230

Length = 267

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R++IA  L+ + PI+  DE TS L
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSAL 511

Length = 582

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQ 125
           LSGGQ++R+ IA  L  +P I+  DEPTS L         E  +  K DYT    T+++Q
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208

Query: 126 QTIRNEVCLISD 137
           Q  R     ISD
Sbjct: 209 QASR-----ISD 215

Length = 252

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQ 125
           LSGGQ++RL IA  +   P ++  DEPTS L         +  V+ K +YT    T N+Q
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ 207

Query: 126 QTIR 129
           Q  R
Sbjct: 208 QASR 211

Length = 251

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 20/86 (23%)

Query: 25  QISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN 84
            +S+ + VL      +Q    F + + + LG +          SGG+++RL++A  L+ +
Sbjct: 72  ALSSLISVL------NQRPYLFDTTLRNNLGRR---------FSGGERQRLALARILLQD 116

Query: 85  PPIMFFDEPTSPLHKAEFTPKYERKV 110
            PI+  DEPT  L      P  ER++
Sbjct: 117 APIVLLDEPTVGL-----DPITERQL 137

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I+E+L  LGL        S+LSGG  ++ ++   LV+NP ++  DEPT+ L
Sbjct: 139 INEVLAQLGLDPD--AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHL 187

Length = 635

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 68  SGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           SGG ++RL IA  LV +P ++F DEPT  L
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182

Length = 258

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++++ + L    T +  +LSGG+K+R+ +A +L   P +   DEPT  L
Sbjct: 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTL 199

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +  SGG+++R++IA   + + PI+  DEPT+ L
Sbjct: 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           +LSGGQ+++L+IA  LV  P ++  DEPT
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPT 159

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E L+ +GL          LSGG+++R+++A  ++  PP++  DEPT  L
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSL 165

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 48  SEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
              L  +GL  ++ T+   LS GQKKRL++A   ++  P+   DEP + L
Sbjct: 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168

Length = 214

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNL 124
           LSGGQ++RL IA  L   P ++  DEP S L     T K E  +   K  YT    T N+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA-TQKIEELIHELKARYTIIIVTHNM 208

Query: 125 QQTIR 129
           QQ  R
Sbjct: 209 QQAAR 213

Length = 253

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 56  LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT---SPL 97
           L+E +  +   LSGG+++ L+IA  L++ P ++  DEP+   +P 
Sbjct: 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E++D L L+         LSGG+ +R++IA  L  +    FFDEP+S L
Sbjct: 122 ELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 47  ISEILDTLGL--QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+LD +GL   E+       LSGGQ++R+ +A  L  +PPI+  DEP   L
Sbjct: 114 ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL 166

Length = 309

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGN-RTQNL 124
           LSGGQ++RL IA  L  +P ++  DEP S L     T K E  + +   +YT    T N+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA-TSKIEDLIEELAEEYTVVVVTHNM 259

Query: 125 QQTIRNEVCLISD 137
           QQ  R     ISD
Sbjct: 260 QQAAR-----ISD 267

Length = 305

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 57  QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
            E +      LSGG+K RL +A  L+  P ++  DEPT
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467

Length = 530

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L  +G+ E++      LSGGQK+R++IA  L   P  + FDEPT+ L
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 175

Length = 280

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 51  LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           L+ +GL EH      NL+ GQ++RL IA  +V  P I+  DEP + L+  E
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE 188

Length = 255

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + + L  +G+++        LSGGQK+R++IA  L   P I+  DE TS L
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171

Length = 279

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR---- 120
           + LSGGQ++RL IA  L   P ++  DEPTS L      P   ++++  ++         
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSAL-----DPIATQRIEKLLEELSENYTIV 199

Query: 121 --TQNLQQTIR 129
             T N+ Q IR
Sbjct: 200 IVTHNIGQAIR 210

Length = 250

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + ++L  +G+ ++  +  +NLSGGQK+R++IA  L   P I+  DE TS L
Sbjct: 124 VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174

Length = 282

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER 108
           LSGGQK+R++IA  L   P I+ FDEPT+ L      PK E 
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGL-----DPKGEH 213

Length = 320

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD-----YT-GNR 120
           LSGGQ++RL +A  L   P I+  DEPTS L      PK   K++  +      YT    
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSAL-----DPKATAKIEDLIQELRGSYTIMIV 237

Query: 121 TQNLQQTIR 129
           T N+QQ  R
Sbjct: 238 THNMQQASR 246

Length = 286

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 3   PDSLESSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTT 62
           P+    SI+D++        RM  +     L  +  +S   +    E+ D L    HK+ 
Sbjct: 94  PNPFPKSIFDNVAFGP----RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL----HKSG 145

Query: 63  MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRT 121
           +   LSGGQ++RL IA  L   P ++  DEP S L         E   + K +YT    T
Sbjct: 146 LA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203

Query: 122 QNLQQTIR 129
            N+QQ  R
Sbjct: 204 HNMQQAAR 211

Length = 251

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGG+++RL+IA  ++ N PI+  DE TS L
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSAL 502

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 56  LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           L+E +      LSGG+++ L+IA  L++ P ++  DEP+  L
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167

Length = 237

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
            NLS G+++ L+IA  ++ +P I+  DE TS
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATS 168

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 32  VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91
           VL  +  +S  G+    E+ D L       +    LSGGQ++RL IA  +   P ++  D
Sbjct: 117 VLDEVVERSLRGAALWDEVKDRL------KSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170

Query: 92  EPTSPL-----HKAE 101
           EPTS L     HK E
Sbjct: 171 EPTSALDPIATHKIE 185

Length = 249

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 48  SEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           + +L  +GL+       +NLS   K+ L IA  L+ +  ++  DEPTS L   E
Sbjct: 127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180

Length = 510

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 33  LAAMFNQSQAGSCFISEILDTLGL-QEHKTTMTSN---LSGGQKKRLSIALELVNNPPIM 88
           L  M          + + L  +GL +E K  +  N   LSGGQ++RL IA  L   P ++
Sbjct: 105 LHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL 164

Query: 89  FFDEPTSPL 97
             DEPTS L
Sbjct: 165 LLDEPTSAL 173

Length = 246

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
              +L+ LG +        +LS G+++R+ IA  LV +P ++  DEP   L
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202

Length = 257

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 68  SGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           SGGQ++R++IA  L+  P ++  DEPTS L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSAL 457

Length = 534

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNL 124
           LSGGQ++RL IA  +   P ++  DEPTS L     T K E  +   K  YT    T N+
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS-TLKIEELITELKSKYTIVIVTHNM 227

Query: 125 QQTIR 129
           QQ  R
Sbjct: 228 QQAAR 232

Length = 272

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           + E+ + L L+E   T    LS GQ+ R  IA  L++ P I+F DEPT
Sbjct: 134 LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +   L   G++  K   T  LS GQKKR++IA  LV  P ++  DEPT+ L
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172

Length = 283

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           NLSGGQK+R+S+A  + ++  I   D+P S
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLS 156

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           L  +GL E        LSGGQ++R+ +A  L   P ++  DEP
Sbjct: 98  LRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEP 140

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           +  SGGQ++R++IA  L+  P ++  DEPTS L K
Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458

Length = 529

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 41  QAGSCFISE------ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           +AG  ++ E      ++  L + E+   ++S LSGG ++++ +A  L  +P ++  DEPT
Sbjct: 74  RAGIAYVPEDRKREGLVLDLSVAEN-IALSSLLSGGNQQKVVLARWLARDPRVLILDEPT 132

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           + +    +G+ ++   +   LSGGQ++R+++A  LV   PI+  DEP S L   
Sbjct: 109 VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
           ++E+L  + +QE        LSGGQ++R+++A  L   P ++  DEP   L K
Sbjct: 130 VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDK 182

Length = 377

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYT-GNRTQNL 124
           LSGGQ++RL IA  L   P ++  DEPTS L     T K E  V + K DY+    T N+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIS-TLKVEELVQELKKDYSIIIVTHNM 226

Query: 125 QQTIR 129
           QQ  R
Sbjct: 227 QQAAR 231

Length = 271

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           ++E+L    L + K      LSGGQ++R++I   LV  P +   DEP S L  A
Sbjct: 117 VAEVLQLAHLLDRKP---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167

Length = 369

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 33  LAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92
           L  +  QS   S   +E+ D L       T   +LSGGQ++RL IA  L   P ++  DE
Sbjct: 123 LDEIVEQSLKKSALWNEVKDKL------NTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176

Query: 93  PTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQQTIR 129
           PTS L         E  ++ K  YT    T N+QQ  R
Sbjct: 177 PTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGR 214

Length = 254

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQK+R++IA  +   P I+  DEPT+ L
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175

Length = 287

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L  + + + +     +LS GQKKR++IA  L  +P ++  DEP + L
Sbjct: 119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169

Length = 274

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQ++R+++A  L  +P ++  DEP S L
Sbjct: 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNL 124
           LSGGQ++RL IA  +  +P ++  DEP S L     T K E  +   K DYT    T N+
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIS-TTKIEDLIHKLKEDYTIVIVTHNM 205

Query: 125 QQTIR 129
           QQ  R
Sbjct: 206 QQATR 210

Length = 250

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           ++L  +GL+  +      LSGGQ++R+ IA  L  NP ++  DEP
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155

Length = 255

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
              SGG ++RL IA  LV  P ++F DEPT  L
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 50   ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK 109
            +L+  GL   +     +LSGG +++LS+A+  V +  ++  DEPTS +      P   R 
Sbjct: 1045 MLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV-----DPYSRRS 1099

Query: 110  V-DTKVDYTGNRTQNLQQTIRNEVCLISD 137
            + D  + Y   RT  +     +E  L+ D
Sbjct: 1100 IWDLLLKYRSGRTIIMSTHHMDEADLLGD 1128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
              ++  +GL+ EH        SGGQ++R++IA  L+ +P ++  DEP S L
Sbjct: 134 ALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185

Length = 327

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           S LSGGQ++RL+IA  L   P ++  DEPTS
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTS 182

Length = 257

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 68  SGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           SGG ++RL IA  LV  P ++F DEPT  L
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182

Length = 258

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL---HKAE 101
           ++LSGGQ++R  +A+ L  + P++  DEPT+ L   H+ E
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176

Length = 255

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYT-GNRTQNL 124
           LSGGQ++RL IA  +   P ++  DEP S L     T K E  + + K ++T    T N+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS-TLKIEETMHELKKNFTIVIVTHNM 213

Query: 125 QQTIR 129
           QQ +R
Sbjct: 214 QQAVR 218

Length = 269

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 39  QSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             +A +  ++ +L+ +GL  EH        SGGQ++R+ IA  L  NP ++  DE  S L
Sbjct: 435 PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494

Length = 623

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 51  LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           L+  GL        + LSGGQ+ R+++   L+  P  +  DEP S L  A
Sbjct: 119 LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168

Length = 213

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +SE L  + + E      + LSGGQK+R++IA  L  NP ++  DE TS L
Sbjct: 123 VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173

Length = 269

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L+ + L+       + LSGGQ++R+++A  L   P ++  DEP   L
Sbjct: 111 VEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+++ LGL+       S LSGG+ +R++IA  L+ +    FFDEPTS L
Sbjct: 195 EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243

Length = 590

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR------ 120
           LSGGQ++ L +A  L  NP ++  DEPTS L      P    K++  +    +R      
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSAL-----DPTTTEKIEEFIRSLADRLTVIIV 218

Query: 121 TQNLQQTIR 129
           T NL Q  R
Sbjct: 219 THNLAQAAR 227

Length = 276

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           LS G+++ + IA  L  N  ++  DEPT+ L  AE
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAE 117

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 50  ILDTLGLQEHKTTMTSN-----LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
            + T GL   + T   N     +SGG++KR+SIA   +    I  +D  T  L  A
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 66   NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            +LSGGQK+R++IA  L+  P I+  DE TS L
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSL 1389

Length = 1466

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQNLQ 125
           LSGGQ++RL IA  +   P ++  DEP S L         E  ++ K  YT    T N+Q
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQ 221

Query: 126 QTIR 129
           Q  R
Sbjct: 222 QASR 225

Length = 274

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           NLSGGQ++R+ +A  L  N  I+F D+P S L
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQ++R+++A  L  +P ++  DEP S L
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503

Length = 580

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGG+K+R+++   L   P I+  DE TS L
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164

Length = 223

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE 107
           LSGGQ++RL IA  L   P ++  DEPT+ L   E T K E
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANL-DPENTAKIE 186

Length = 250

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           N+SGGQK+R+S+A  + +N  +  FD+P S L
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771

Length = 1622

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           + E +  +GL E        LSGG K+R++IA  L   P ++  DEP
Sbjct: 95  VEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEP 141

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 49  EILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             L+ +GL+     +      +SGG  +R+ IAL L+   P +  DEPT+ L
Sbjct: 120 AALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL 171

Length = 254

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 19/77 (24%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV 114
           GL         NLS GQ++ L +A  L+    I+  DE T+                  V
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATA-----------------SV 170

Query: 115 DYTGNRTQNLQQTIRNE 131
           D   +    +Q+TIR  
Sbjct: 171 DPETDAL--IQKTIREA 185

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           E+++   ++  + +M  +LSGG+++R+ IA  L  NP  +  DEP
Sbjct: 120 ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164

Length = 241

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 48  SEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           +++ D +  + HK+ +  +LSGGQ++RL IA  L   P ++  DEP   L   
Sbjct: 134 ADLWDEIKHKIHKSAL--DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184

Length = 261

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNL 124
           LSGGQ++RL IA  +   P ++  DEP S L     T + E  +   K  YT    T N+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIS-TLRIEELMHELKEQYTIIIVTHNM 210

Query: 125 QQTIR 129
           QQ  R
Sbjct: 211 QQAAR 215

Length = 264

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           F++EILD   L+         LS GQ+ R  +A  L++ P ++F DEPT
Sbjct: 139 FLTEILD---LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184

Length = 325

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           N+SGGQK+R+S+A  + +N  I  FD+P S L
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771

Length = 1495

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           NLSGGQK+R+S+A  + +N  I  FD+P S
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLS 789

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 47  ISEILDTLGL--QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+L  +GL   E        LSGGQ++R+ +A  L  +PP++  DEP   L
Sbjct: 114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I+E+LD +GL+ E    +   LSGGQ +R++IA  L   P ++  DE  S L
Sbjct: 130 IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 17  KKTPLTRMQISNGMMV---LAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN---LSGG 70
           K  P   M I + ++    L    N+S+A     S +       E K  + SN   LSGG
Sbjct: 93  KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152

Query: 71  QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYT-GNRTQNLQQTI 128
           Q++RL IA  +   P ++  DEP S L     T K E  ++  K  YT    T N+QQ  
Sbjct: 153 QQQRLCIARTIAVKPEVILMDEPASALDPIS-TLKIEELIEELKEKYTIIIVTHNMQQAA 211

Query: 129 R 129
           R
Sbjct: 212 R 212

Length = 252

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            LSGGQ++RL IA  +   P ++  DEP S L
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180

Length = 251

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 59  HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           H++ ++  LSGGQ++R+ IA  L   P ++  DEPTS L
Sbjct: 143 HESALS--LSGGQQQRVCIARVLAVKPDVILLDEPTSAL 179

Length = 252

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 49  EILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +G+++HK  M S    L+ G+ +++ IA+ L N P ++  DEPT+ +
Sbjct: 138 ELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189

Length = 330

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQK+R+++A  L   P I+  DEP   L
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167

Length = 353

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 1   MNPDSLESSIWD---SMDPKK-TPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL 56
           + PD  E S  D   S  P+  +P     +     +L +    +   S F +EI+  L L
Sbjct: 391 IKPD--EGSEEDLKVSYKPQYISPDYDGTVE---DLLRSAIRSAFGSSYFKTEIVKPLNL 445

Query: 57  QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++        LSGG+ +R++IA  L     +   DEP++ L
Sbjct: 446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486

Length = 591

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 49  EILDTLGLQEHKTTMTS---NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+L  +G+++HK  M S    L+ G+ +++ IA+ L N P ++  DEPT+ +
Sbjct: 138 ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189

Length = 330

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 54  LGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LGL+   +     LSGGQ++ LS+ +  ++ P I+  DE T+ L
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL 179

Length = 263

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +LSGG+ +R++IA  L+ N     FDEP++ L
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I E L+ L L E+       LS G ++++     ++++P ++  DEP S L
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +SGGQ++R+++A  L+  P ++ FDEP S L
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNL 167

Length = 351

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYT-GNRTQN 123
             LSGGQ++RL IA  +   P ++  DEP S L         +   + K DYT    T N
Sbjct: 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206

Query: 124 LQQTIR 129
           +QQ  R
Sbjct: 207 MQQAAR 212

Length = 258

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +++ +   G+          LSGGQ++R  IA+ L     IM  DEPT+ L
Sbjct: 124 VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174

Length = 265

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +  SGG+++R++IA   + + PI+  DEPT+ L
Sbjct: 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183

Length = 235

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++RL IA  +  +P ++  DEP S L
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194

Length = 267

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 50  ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL---HKAEFTPKY 106
           I+  LG++        +LSGG+K+R++I   L+  P ++  DEP + L    K E  P  
Sbjct: 112 IVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171

Query: 107 ER---KVDTKVDYTGNRTQNLQQTIR 129
           ER   +++  + Y    + +L + +R
Sbjct: 172 ERLAREINIPILYV---SHSLDEILR 194

Length = 352

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I E+ +  GL        ++LS G+++R+ I   L     ++  DEPT+ L
Sbjct: 121 IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171

Length = 501

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 3   PDSLESSIWDSM--DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK 60
           P   E SI+D++   P+   +      N   +L  +  +S   +    E+ D L      
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGI------NDRKILEKIVEKSLKSAALWDEVKDDL------ 219

Query: 61  TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
               + LSGGQ++RL IA  +   P ++  DEPTS L
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSAL 256

Length = 329

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 51  LDTLGLQEHKTT------MTSNLSGGQKKRLSIALELVNNPPIMFFDE 92
           L+ L +  HK            LS GQKKRL++ L L     I+  DE
Sbjct: 429 LERLKMA-HKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475

Length = 547

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           ++  L  + + E +      LSGGQKKR+ +A  +     ++  DEP
Sbjct: 123 VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP 169

Length = 272

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 64  TSNLSGGQKKRLSIALEL-VNNPPIMF-FDEPTSPLH 98
            S LSGG+ +R+ +A EL    P  +F  DEP++ LH
Sbjct: 85  LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           S LSGG+++R+ +A  L   P ++  DEPT+ L
Sbjct: 136 STLSGGERQRVHVARALAQEPKLLLLDEPTNHL 168

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E L  + + + KT   + LSGGQK+R+++A  +   P I+  DE TS L
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171

Length = 277

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++RL IA  L   P ++  DEP S L
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181

Length = 259

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 28  NGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI 87
            G+M   AM+ ++Q       ++L  L L  +  T   NL  GQ++ + IA  L     +
Sbjct: 112 GGIMDYDAMYLRAQ-------KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164

Query: 88  MFFDEPTSPLHKAE 101
           +  DEPT+ L ++E
Sbjct: 165 LILDEPTASLTESE 178

Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.95
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.95
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.95
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.94
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.94
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.94
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.94
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.94
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.94
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.94
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.94
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.94
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.93
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.93
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.93
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.93
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.93
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.93
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.93
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.92
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.92
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.92
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.92
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.92
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.92
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.92
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.92
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.92
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.92
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.92
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.92
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.92
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.92
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.92
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.92
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.92
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.92
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.92
PRK10908	222	cell division protein FtsE; Provisional	99.92
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.92
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.92
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.91
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.91
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.91
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.91
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.91
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.91
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.91
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.91
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.91
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.91
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.91
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.91
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.91
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.91
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.91
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.91
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.91
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.91
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.91
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.91
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.91
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.91
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.91
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.91
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.91
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.9
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.9
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.9
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.9
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.9
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.9
COG1123	539	ATPase components of various ABC-type transport sy	99.9
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.9
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.9
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.9
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.9
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.9
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.9
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.9
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.9
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.9
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.9
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.9
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.9
COG4181	228	Predicted ABC-type transport system involved in ly	99.9
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.9
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.9
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.9
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.9
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
COG1123	539	ATPase components of various ABC-type transport sy	99.9
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.89
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.89
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.89
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.89
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.89
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.89
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.89
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.89
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.89
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.89
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.89
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.89
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.89
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.89
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.89
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.89
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.89
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.89
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.89
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.89
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.89
COG4172	534	ABC-type uncharacterized transport system, duplica	99.89
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.89
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.89
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.89
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.89
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.89
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.89
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.89
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.89
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.89
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.89
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.88
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.88
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.88
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.88
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.88
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.88
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.88
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.88
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.88
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.88
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.88
PLN03211	659	ABC transporter G-25; Provisional	99.88
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.88
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.88
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.87
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.87
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.87
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.87
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.87
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.87
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13409	590	putative ATPase RIL; Provisional	99.87
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.87
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.87
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.87
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.87
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.87
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.86
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.86
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.86
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.86
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK10938	490	putative molybdenum transport ATP-binding protein	99.86
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.86
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.86
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.86
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.86
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.86
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.85
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.85
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.85
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.85
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.85
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.85
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.84
KOG0061|consensus	613		99.84
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.84
PRK10938	490	putative molybdenum transport ATP-binding protein	99.84
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.84
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.83
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.83
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.83
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.83
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.83
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.83
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.83
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.83
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.83
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.82
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.82
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.82
PRK11147	635	ABC transporter ATPase component; Reviewed	99.82
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.82
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.82
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.82
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.82
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.82
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.82
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.82
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.82
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.82
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.81
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.81
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.81
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.81
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.81
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.81
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.81
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.81
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.81
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.81
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.81
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.81
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.81
PRK13409	590	putative ATPase RIL; Provisional	99.81
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.81
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.81
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.8
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.8
PRK11147	635	ABC transporter ATPase component; Reviewed	99.8
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.8
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.79
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.79
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.79
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.79
COG4988	559	CydD ABC-type transport system involved in cytochr	99.79
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.79
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.79
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.79
PLN03073	718	ABC transporter F family; Provisional	99.78
COG4987	573	CydC ABC-type transport system involved in cytochr	99.78
PLN03073	718	ABC transporter F family; Provisional	99.78
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.78
cd03246	173	ABCC_Protease_Secretion This family represents the	99.77
KOG0057|consensus	591		99.77
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.77
PLN03140	1470	ABC transporter G family member; Provisional	99.77
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.76
KOG0059|consensus	885		99.76
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.76
COG4559	259	ABC-type hemin transport system, ATPase component	99.76
PLN03232	1495	ABC transporter C family member; Provisional	99.76
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.76
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.75
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.75
KOG0055|consensus	1228		99.75
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.75
PTZ00243	1560	ABC transporter; Provisional	99.75
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.75
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.75
PLN03130	1622	ABC transporter C family member; Provisional	99.74
PLN03232	1495	ABC transporter C family member; Provisional	99.74
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.74
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.73
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.73
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.73
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.73
KOG0058|consensus	716		99.72
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.72
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.72
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.72
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.71
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.71
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.71
PTZ00243	1560	ABC transporter; Provisional	99.71
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.7
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.69
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.69
COG0488	530	Uup ATPase components of ABC transporters with dup	99.69
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.69
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.68
KOG0055|consensus	1228		99.68
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.68
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.66
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.63
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.63
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.62
KOG0054|consensus	1381		99.62
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.62
KOG0065|consensus	1391		99.6
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.58
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.58
COG0488	530	Uup ATPase components of ABC transporters with dup	99.58
KOG0062|consensus	582		99.54
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.53
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.53
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.52
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.52
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.52
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.47
KOG0927|consensus	614		99.46
PHA02562	562	46 endonuclease subunit; Provisional	99.45
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.45
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.45
COG4178	604	ABC-type uncharacterized transport system, permeas	99.45
KOG0062|consensus	582		99.44
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.42
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.42
KOG0927|consensus	614		99.42
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.38
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.37
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.37
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.35
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.35
PRK10869	553	recombination and repair protein; Provisional	99.31
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.29
KOG0056|consensus	790		99.28
PRK03918	880	chromosome segregation protein; Provisional	99.27
PRK01156	895	chromosome segregation protein; Provisional	99.27
KOG0054|consensus	1381		99.25
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.25
KOG0066|consensus	807		99.23
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.23
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.23
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.21
KOG0065|consensus	1391		99.19
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.18
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.18
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.12
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.09
PRK00064	361	recF recombination protein F; Reviewed	99.08
KOG0066|consensus	807		99.07
TIGR00611	365	recf recF protein. All proteins in this family for	99.06
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.93
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.93
KOG0060|consensus	659		98.93
PRK02224	880	chromosome segregation protein; Provisional	98.92
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.78
PRK14079	349	recF recombination protein F; Provisional	98.76
KOG2355|consensus	291		98.71
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.71
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.66
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.66
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.64
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.6
KOG0064|consensus	728		98.59
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.59
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.57
KOG0063|consensus	592		98.52
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.49
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.47
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.45
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.34
KOG0063|consensus	592		98.33
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.32
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.23
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.22
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.06
PRK13695	174	putative NTPase; Provisional	97.83
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.68
PF13175	415	AAA_15: AAA ATPase domain	97.41
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.38
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.25
PRK13830	818	conjugal transfer protein TrbE; Provisional	97.16
cd01128	249	rho_factor Transcription termination factor rho is	97.09
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.09
PF13166	712	AAA_13: AAA domain	96.85
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.81
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.79
PRK13891	852	conjugal transfer protein TrbE; Provisional	96.62
PRK06067	234	flagellar accessory protein FlaH; Validated	96.47
KOG0933|consensus	1174		96.45
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.24
COG4637	373	Predicted ATPase [General function prediction only	95.93
PRK05399	854	DNA mismatch repair protein MutS; Provisional	95.92
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	95.86
KOG0964|consensus	1200		95.62
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.19
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	94.98
KOG0962|consensus	1294		94.84
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	94.7
COG3910	233	Predicted ATPase [General function prediction only	94.62
KOG0996|consensus	1293		94.24
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	94.13
PF13514	1111	AAA_27: AAA domain	93.72
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	93.63
PRK08699	325	DNA polymerase III subunit delta'; Validated	93.58
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	92.22
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	92.2
smart00382	148	AAA ATPases associated with a variety of cellular	92.15
PRK04863	1486	mukB cell division protein MukB; Provisional	91.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	91.05
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	89.84
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	89.43
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	89.22
KOG0018|consensus	1141		88.94
KOG0250|consensus	1074		88.81
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	86.09
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	86.07
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	85.87
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	85.17
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	84.57
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	83.0

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-33  Score=216.00  Aligned_cols=120  Identities=23%  Similarity=0.321  Sum_probs=104.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+++||++||.+|+.++.- ... ..++.+  .++++.++|+.+||.++++.+|++|||||||||+|||||+.+|+++|+
T Consensus        85 ~fnLFPHlTvleNv~lap~-~v~-~~~k~e--A~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF  160 (240)
T COG1126          85 QFNLFPHLTVLENVTLAPV-KVK-KLSKAE--AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF  160 (240)
T ss_pred             cccccccchHHHHHHhhhH-HHc-CCCHHH--HHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence            4689999999999998752 221 223334  678899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||.-..++++-+.     |-|.++   +||+|.+|..  |||+++.+
T Consensus       161 DEPTSALDPElv~EVL~vm~~LA~eGmTMiv---VTHEM~FAr~VadrviFmd~  211 (240)
T COG1126         161 DEPTSALDPELVGEVLDVMKDLAEEGMTMII---VTHEMGFAREVADRVIFMDQ  211 (240)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCeEEE---EechhHHHHHhhheEEEeeC
Confidence            99999999999998888544     669999   9999999999  99999753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.7e-31  Score=209.63  Aligned_cols=119  Identities=21%  Similarity=0.319  Sum_probs=103.2

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.++|++||++|+.++.....   .++.+  ..+++.++|+.+||.+..+++|++|||||||||+|||||+.+|++|+|
T Consensus        80 ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e--~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl  154 (248)
T COG1116          80 EDALLPWLTVLDNVALGLELRG---KSKAE--ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL  154 (248)
T ss_pred             cCcccchhhHHhhheehhhccc---cchHh--HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence            3568999999999999854322   11223  456899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||++||..++..+-+.+.      +.||++   .|||+++|..  |||+++++
T Consensus       155 DEPFgALDalTR~~lq~~l~~lw~~~~~Tvll---VTHdi~EAv~LsdRivvl~~  206 (248)
T COG1116         155 DEPFGALDALTREELQDELLRLWEETRKTVLL---VTHDVDEAVYLADRVVVLSN  206 (248)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE---EeCCHHHHHhhhCEEEEecC
Confidence            99999999999987776443      679999   9999999999  99999974

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.3e-31  Score=211.18  Aligned_cols=118  Identities=24%  Similarity=0.325  Sum_probs=105.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .++++.+.||++|++|+..+..   .++.+  .++++.++|+.+||.++.+++|.+|||||||||+|||||+.+|+|||+
T Consensus        91 hFnLLssrTV~~NvA~PLeiag---~~k~e--i~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~  165 (339)
T COG1135          91 HFNLLSSRTVFENVAFPLELAG---VPKAE--IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC  165 (339)
T ss_pred             cccccccchHHhhhhhhHhhcC---CCHHH--HHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence            4678889999999999865432   23344  788999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||+|||.+.+.+++.+.      |.||.+   .||.|+...+  |||.+++
T Consensus       166 DEaTSALDP~TT~sIL~LL~~In~~lglTIvl---ITHEm~Vvk~ic~rVavm~  216 (339)
T COG1135         166 DEATSALDPETTQSILELLKDINRELGLTIVL---ITHEMEVVKRICDRVAVLD  216 (339)
T ss_pred             cCccccCChHHHHHHHHHHHHHHHHcCCEEEE---EechHHHHHHHhhhheEee
Confidence            99999999999999998665      779999   9999999999  9999986

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=3.3e-30  Score=203.74  Aligned_cols=118  Identities=21%  Similarity=0.368  Sum_probs=101.9

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      +..+||++||.+|+.+...+..   +.+.+  .+++++++|+.+||+  ++++++|++|||||||||.+||||+.+|++|
T Consensus        83 qigLFPh~Tv~eNIa~VP~L~~---w~k~~--i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il  157 (309)
T COG1125          83 QIGLFPHLTVAENIATVPKLLG---WDKER--IKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL  157 (309)
T ss_pred             hcccCCCccHHHHHHhhhhhcC---CCHHH--HHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence            3568999999999998755432   23334  778999999999997  4889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHh------hccceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYER------KVDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~------~~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |+||||++|||.++.++=+.      ..+.||.+   +||||++|..  ||+|++.
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf---VTHDidEA~kLadri~vm~  210 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVF---VTHDIDEALKLADRIAVMD  210 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEE---EecCHHHHHhhhceEEEec
Confidence            99999999999999866553      23789999   9999999999  9999875

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=5.9e-29  Score=193.79  Aligned_cols=119  Identities=26%  Similarity=0.298  Sum_probs=101.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-ccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-TMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      ..++++.+||.||+.++..+...   ....  ..+++.++++.+|+.+..+ ++|.+|||||||||+|||||+.+|++||
T Consensus        91 ~~nLl~~ltv~ENv~lpl~~~~~---~~~~--~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil  165 (226)
T COG1136          91 NFNLLPDLTVLENVELPLLIAGK---SAGR--RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIIL  165 (226)
T ss_pred             cCCCCCCCCHHHHHHhHHHHcCC---ChhH--HHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE
Confidence            56789999999999986432211   1112  4667889999999997776 8899999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      +||||++||..+.+.+++.+.      |.||++   .|||...|.. ||+|.|.|
T Consensus       166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~---VTHd~~lA~~~dr~i~l~d  217 (226)
T COG1136         166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIM---VTHDPELAKYADRVIELKD  217 (226)
T ss_pred             eeCccccCChHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHhCCEEEEEeC
Confidence            999999999999999988544      669999   8999999999 99999876

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.9e-29  Score=191.70  Aligned_cols=115  Identities=23%  Similarity=0.233  Sum_probs=93.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      .|+.|| +|+++|+.++..++...  . .+  .++.++..|+...|++    .+++.+..||||||||+||||||+.+|+
T Consensus        96 kPnPFp-~SIydNVayG~r~~g~~--~-~~--ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe  169 (253)
T COG1117          96 KPNPFP-MSIYDNVAYGLRLHGIK--D-KE--LDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE  169 (253)
T ss_pred             CCCCCC-chHHHHHHHhHHhhccc--h-HH--HHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence            456777 99999999986554221  1 22  6778899999998864    4567789999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEE
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCL  134 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~  134 (137)
                      +||||||||+|||.+..+|-+.+.    +-||.+   +||||+||.|  |...+
T Consensus       170 VlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIvi---VTHnmqQAaRvSD~taF  220 (253)
T COG1117         170 VLLMDEPTSALDPISTLKIEELITELKKKYTIVI---VTHNMQQAARVSDYTAF  220 (253)
T ss_pred             EEEecCcccccCchhHHHHHHHHHHHHhccEEEE---EeCCHHHHHHHhHhhhh
Confidence            999999999999999987766443    558888   9999999999  65443

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=4.6e-28  Score=189.73  Aligned_cols=120  Identities=22%  Similarity=0.266  Sum_probs=100.1

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      +.++|.++||+||+.|...-  ...+++..  .++.+..-|+.+||... .+++|++|||||+||+++|||++.+|++|+
T Consensus        93 ~gALFssltV~eNVafplre--~~~lp~~~--i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~  168 (263)
T COG1127          93 QGALFSSLTVFENVAFPLRE--HTKLPESL--IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF  168 (263)
T ss_pred             ccccccccchhHhhheehHh--hccCCHHH--HHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence            46789999999999987421  11223333  66778888999999887 899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +||||+||||.+...|-+...      |.|+++   .|||+..+..  |||++|.|
T Consensus       169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~---VTHDl~s~~~i~Drv~~L~~  221 (263)
T COG1127         169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIM---VTHDLDSLLTIADRVAVLAD  221 (263)
T ss_pred             ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE---EECChHHHHhhhceEEEEeC
Confidence            999999999999876655322      779999   8999998888  99999875

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=183.71  Aligned_cols=120  Identities=19%  Similarity=0.260  Sum_probs=100.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +++|..+||.+|+...........   ...+.+.+++++|+.|++.+..+++..+||||||+|++|||||+.+|+.++||
T Consensus        88 ~SIFr~LtV~dNi~~vlE~~~~d~---~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD  164 (243)
T COG1137          88 ASIFRKLTVEDNIMAVLEIREKDL---KKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD  164 (243)
T ss_pred             chHhhcCcHHHHHHHHHhhhhcch---hHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence            357889999999987654432111   11113446889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|+||.+...|-+.     -+|.+|++   |+||+++++.  ||+|+|++
T Consensus       165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLI---TDHNVREtL~i~dRaYIi~~  214 (243)
T COG1137         165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLI---TDHNVRETLDICDRAYIISD  214 (243)
T ss_pred             CCccCCCchhHHHHHHHHHHHHhCCceEEE---ccccHHHHHhhhheEEEEec
Confidence            99999999998877663     33889999   9999999999  99999975

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.1e-27  Score=186.75  Aligned_cols=116  Identities=21%  Similarity=0.257  Sum_probs=97.3

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP   96 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg   96 (137)
                      .+||+|.+.++...+.. .+.+-.+...++++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||||+|
T Consensus        91 P~tV~d~V~~g~~~~~g-~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~g  169 (254)
T COG1121          91 PITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG  169 (254)
T ss_pred             CcCHHHHHHccCccccc-ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCccc
Confidence            38999999988533211 11111111457899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           97 LHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        97 LD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +|+.++..|++.+.     |.||++   .+||+..+..  |+|+.|.
T Consensus       170 vD~~~~~~i~~lL~~l~~eg~tIl~---vtHDL~~v~~~~D~vi~Ln  213 (254)
T COG1121         170 VDVAGQKEIYDLLKELRQEGKTVLM---VTHDLGLVMAYFDRVICLN  213 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEE---EeCCcHHhHhhCCEEEEEc
Confidence            99999999998543     779999   8999999999  9998874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=4.1e-27  Score=189.37  Aligned_cols=120  Identities=26%  Similarity=0.404  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|++||+.+...++...   ...  ..++++++++.+||.+..++++++||+|||||+.||+||+++|+++|||
T Consensus        87 ~~~~~~lT~~e~l~~~~~l~~~~---~~~--~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD  161 (293)
T COG1131          87 PSLYPELTVRENLEFFARLYGLS---KEE--AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD  161 (293)
T ss_pred             CCCCccccHHHHHHHHHHHhCCC---hhH--HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            44799999999999876554221   112  4568999999999998778899999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----c-ceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----D-TKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~-~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+||||.++..+++.++     + .||+++||...++.+. -|+|++|.+
T Consensus       162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~-~d~v~il~~  212 (293)
T COG1131         162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILND  212 (293)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh-CCEEEEEeC
Confidence            9999999999999999655     4 6999966666666655 489998864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=1.3e-27  Score=193.51  Aligned_cols=118  Identities=22%  Similarity=0.350  Sum_probs=101.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.++|+.||.+|..|+..+..   .++.+  .++++.++|+.+||..+.+++|.+|||||||||.+||||+.+|+|||+|
T Consensus       115 FaLlPhrtVl~Nv~fGLev~G---v~~~e--r~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD  189 (386)
T COG4175         115 FALLPHRTVLENVAFGLEVQG---VPKAE--REERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD  189 (386)
T ss_pred             hccccchhHhhhhhcceeecC---CCHHH--HHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence            568999999999999865432   22234  6778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||--+.+.-+.+.      .+||.+   .|||+.+|+|  ||+.++.|
T Consensus       190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF---itHDLdEAlriG~rIaimkd  240 (386)
T COG4175         190 EAFSALDPLIRTEMQDELLELQAKLKKTIVF---ITHDLDEALRIGDRIAIMKD  240 (386)
T ss_pred             CchhhcChHHHHHHHHHHHHHHHHhCCeEEE---EecCHHHHHhccceEEEecC
Confidence            9999999988875544322      669999   8999999999  88888754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2e-27  Score=194.42  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=101.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .++||+|||++|+.|+.....   .++.+  .++++++.++.++|++.++++|.+|||||||||+|||||+++|+++|||
T Consensus        84 yALyPhmtV~~Niaf~Lk~~~---~~k~e--i~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D  158 (338)
T COG3839          84 YALYPHMTVYENIAFGLKLRG---VPKAE--IDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD  158 (338)
T ss_pred             ccccCCCcHHHHhhhhhhhCC---CchHH--HHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence            568999999999999854321   12234  7889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|+||..-+..+...+.      +.|++|   .|||-.+|+-  ||+.++.
T Consensus       159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IY---VTHDq~EAmtladri~Vm~  208 (338)
T COG3839         159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIY---VTHDQVEAMTLADRIVVMN  208 (338)
T ss_pred             CchhHhhHHHHHHHHHHHHHHHHhcCCcEEE---EcCCHHHHHhhCCEEEEEe
Confidence            9999999999886665433      679999   8999999988  9998875

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.94  E-value=4e-27  Score=179.45  Aligned_cols=121  Identities=24%  Similarity=0.299  Sum_probs=99.0

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +..+++++||+||++++.....   .+..+  ..+++.+.|+.+||.+.++..|.+||||||||++||||++.+|++||.
T Consensus        87 D~rLL~~~tvyeNVA~pL~v~G---~~~~~--i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA  161 (223)
T COG2884          87 DFRLLPDRTVYENVALPLRVIG---KPPRE--IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA  161 (223)
T ss_pred             eccccccchHhhhhhhhhhccC---CCHHH--HHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence            4568899999999998854321   11223  678999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||.+|||.....+++.+.     |.||++.||..+=|.+. +-|++.|++
T Consensus       162 DEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~-~~rvl~l~~  212 (223)
T COG2884         162 DEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM-RHRVLALED  212 (223)
T ss_pred             cCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc-cCcEEEEeC
Confidence            99999999999998888654     88999955554444333 367777653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.9e-27  Score=190.63  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=102.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +..+|+.|||.+|+.|+...+. ...+..+  .+.++.++|+.+.|++..+++|.+|||||||||++||||+..|++|||
T Consensus        85 ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~--~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL  161 (345)
T COG1118          85 HYALFPHMTVADNIAFGLKVRK-ERPSEAE--IRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL  161 (345)
T ss_pred             chhhcccchHHhhhhhcccccc-cCCChhh--HHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence            3468999999999999964431 1111223  677899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+++||..-+..+-.-++      |.+..+   +|||..+|.+  |||.++++
T Consensus       162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf---VTHD~eea~~ladrvvvl~~  213 (345)
T COG1118         162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVF---VTHDQEEALELADRVVVLNQ  213 (345)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHhhCceEEE---EeCCHHHHHhhcceEEEecC
Confidence            99999999999987766444      556677   7999999999  99999975

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=2.2e-27  Score=195.06  Aligned_cols=120  Identities=20%  Similarity=0.309  Sum_probs=102.2

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ..++||+|||++|+.|+....  ....+.+  +.+++.++|+.++++++.+++|++|||||||||+|||||+.+|++|||
T Consensus        85 ~YALFPHltV~~NVafGLk~~--~~~~~~~--i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL  160 (352)
T COG3842          85 SYALFPHMTVEENVAFGLKVR--KKLKKAE--IKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL  160 (352)
T ss_pred             CcccCCCCcHHHHhhhhhhhc--CCCCHHH--HHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence            357999999999999985421  1111122  667999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|+||..-+.++-..++      |.|.+|   .|||=.+|+.  ||+.++++
T Consensus       161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~---VTHDqeEAl~msDrI~Vm~~  212 (352)
T COG3842         161 DEPLSALDAKLREQMRKELKELQRELGITFVY---VTHDQEEALAMSDRIAVMND  212 (352)
T ss_pred             cCcccchhHHHHHHHHHHHHHHHHhcCCeEEE---EECCHHHHhhhccceEEccC
Confidence            99999999999987665433      778888   8999999998  99998864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1e-26  Score=191.58  Aligned_cols=119  Identities=20%  Similarity=0.243  Sum_probs=99.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||++|+.++.....   ....+  ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        84 ~~~lfp~~tv~eNi~~~~~~~~---~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL  158 (356)
T PRK11650         84 NYALYPHMSVRENMAYGLKIRG---MPKAE--IEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF  158 (356)
T ss_pred             CccccCCCCHHHHHHhHHhhcC---CCHHH--HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3568899999999998743211   11122  456788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||++||+..+..+.+.+.      +.|+++   .|||..+|..  |+++++.+
T Consensus       159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~l~D~i~vl~~  210 (356)
T PRK11650        159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY---VTHDQVEAMTLADRVVVMNG  210 (356)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            99999999999998877443      679999   7888888876  99998864

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.94  E-value=1e-26  Score=191.96  Aligned_cols=119  Identities=18%  Similarity=0.265  Sum_probs=99.9

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+.+||++|+.++.....   ....+  ..+++.++++.+||++..++++.+|||||||||+|||||+.+|++|||
T Consensus        87 ~~~l~p~~tv~enl~~~l~~~~---~~~~~--~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        87 NYALFPHLKVEDNVAFGLRAQK---MPKAD--IAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             CcccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3468999999999998743211   11112  456789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+.++.+.+.       |.|++|   .|||+.+|..  ||++++.+
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~---vTHd~~ea~~l~dri~vl~~  214 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAALHEELPELTILC---VTHDQDDALTLADKAGIMKD  214 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998888443       579999   8888888876  99999864

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.4e-26  Score=190.11  Aligned_cols=118  Identities=26%  Similarity=0.333  Sum_probs=98.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+++|+.++....   .....+  ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        91 ~~l~~~~tv~eni~~~~~~~---~~~~~~--~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD  165 (343)
T TIGR02314        91 FNLLSSRTVFGNVALPLELD---NTPKDE--IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD  165 (343)
T ss_pred             ccccccCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            46788899999998764321   111122  4567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||++||+.++..+++.+.      +.||++   .|||+..+..  |++++|.+
T Consensus       166 EPts~LD~~t~~~i~~lL~~l~~~~g~tiil---iTH~~~~v~~~~d~v~vl~~  216 (343)
T TIGR02314       166 EATSALDPATTQSILELLKEINRRLGLTILL---ITHEMDVVKRICDCVAVISN  216 (343)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543      569999   7888888876  99998864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.94  E-value=1.5e-26  Score=191.20  Aligned_cols=119  Identities=22%  Similarity=0.333  Sum_probs=100.5

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||++|+.++....   .+...+  ..+++.++++.+||+.+.++++.+|||||||||+|||||+.+|++|||
T Consensus        79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~--~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl  153 (363)
T TIGR01186        79 QFALFPHMTILQNTSLGPELL---GWPEQE--RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM  153 (363)
T ss_pred             CCcCCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            456889999999998864321   111122  456788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+.+.+.      +.||++   .|||+.++..  |+++++.+
T Consensus       154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~---vTHd~~ea~~~~drI~vl~~  205 (363)
T TIGR01186       154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVF---ITHDLDEAIRIGDRIVIMKA  205 (363)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            99999999999998888543      679999   8899998877  99998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=189.64  Aligned_cols=119  Identities=19%  Similarity=0.285  Sum_probs=100.5

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||++|+.++...+.   ....+  ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        86 ~~~lfp~~tv~eNi~~~l~~~~---~~~~~--~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL  160 (351)
T PRK11432         86 SYALFPHMSLGENVGYGLKMLG---VPKEE--RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF  160 (351)
T ss_pred             CcccCCCCCHHHHHHHHHhHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            3468999999999998743211   11122  456889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+.++.+.+.      +.|+++   .|||..++..  |+++++.+
T Consensus       161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~e~~~laD~i~vm~~  212 (351)
T PRK11432        161 DEPLSNLDANLRRSMREKIRELQQQFNITSLY---VTHDQSEAFAVSDTVIVMNK  212 (351)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            99999999999998887543      679999   8899998877  99999864

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.4e-26  Score=189.08  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=100.4

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||++|+.++....   ...+.+  ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        84 ~~~lfp~~tv~eNi~~~~~~~---~~~~~~--~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL  158 (353)
T TIGR03265        84 SYALFPNLTVADNIAYGLKNR---GMGRAE--VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL  158 (353)
T ss_pred             CcccCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            356899999999999874321   111122  456889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||++||+..+..+.+.+.      +.|+++   .|||..+|..  |++++|.+
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~---vTHd~~ea~~l~d~i~vl~~  210 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIM---VTHDQEEALSMADRIVVMNH  210 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            99999999999998887543      679999   7888888877  99999864

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.94  E-value=1.3e-26  Score=183.77  Aligned_cols=124  Identities=25%  Similarity=0.268  Sum_probs=103.5

Q ss_pred             cCC-CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           10 IWD-SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        10 ~~~-~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      |+. ...+.+||+|.+.+|+..+.. .+....+++++.+.+.|+.+|+.+++++++.+||||||||+.|||||+++|++|
T Consensus        82 pQ~~~~~~~~tV~d~V~~GR~p~~~-~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL  160 (258)
T COG1120          82 PQSPSAPFGLTVYELVLLGRYPHLG-LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL  160 (258)
T ss_pred             ccCCCCCCCcEEeehHhhcCCcccc-cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence            444 345679999999998653321 111112224567899999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||++||...+.++++.++      |.||++   +.||+.+|.+  |+++++.+
T Consensus       161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~---vlHDlN~A~ryad~~i~lk~  214 (258)
T COG1120         161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVM---VLHDLNLAARYADHLILLKD  214 (258)
T ss_pred             EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999999998544      678999   9999999999  99999864

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.8e-26  Score=188.87  Aligned_cols=119  Identities=18%  Similarity=0.265  Sum_probs=98.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||.+|+.++.....   ....+  ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        99 ~~~lfp~ltv~eNi~~~l~~~~---~~~~~--~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL  173 (377)
T PRK11607         99 SYALFPHMTVEQNIAFGLKQDK---LPKAE--IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL  173 (377)
T ss_pred             CCccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3568999999999998743211   11122  456788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||++||+..+..+.+.+      .+.|+++   .|||..+|..  |++++|.+
T Consensus       174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~laDri~vl~~  225 (377)
T PRK11607        174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVM---VTHDQEEAMTMAGRIAIMNR  225 (377)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEeC
Confidence            9999999999998776422      2679999   7888888776  99999864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-26  Score=180.68  Aligned_cols=122  Identities=19%  Similarity=0.285  Sum_probs=103.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhH--Hh---hhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVL--AA---MFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNP   85 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~--~~---~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P   85 (137)
                      ++++.+.++|++|+..+..-+..  ..   ++..+  .+..+-+.|+++|+.+++..+.++|||||||||+|||||+++|
T Consensus        89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~--dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~p  166 (258)
T COG3638          89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE--DKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQP  166 (258)
T ss_pred             cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH--HHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCC
Confidence            57889999999999987532111  11   11122  4567889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++||.|||+|+|||.+.+++++.++      |.||++   +.|++..|+.  +|+|-|.+
T Consensus       167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~---nLH~vdlA~~Y~~Riigl~~  223 (258)
T COG3638         167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIV---NLHQVDLAKKYADRIIGLKA  223 (258)
T ss_pred             CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE---EechHHHHHHHHhhheEecC
Confidence            9999999999999999999999766      679999   9999999999  99887753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.93  E-value=6.2e-26  Score=173.40  Aligned_cols=118  Identities=20%  Similarity=0.308  Sum_probs=94.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        89 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  163 (216)
T TIGR00960        89 HRLLSDRTVYDNVAFPLRII---GVPPRD--ANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD  163 (216)
T ss_pred             ccccccccHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            45677899999998763211   101111  3457888999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+..+..  |+++++.+
T Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~  213 (216)
T TIGR00960       164 EPTGNLDPELSRDIMRLFEEFNRRGTTVLV---ATHDINLVETYRHRTLTLSR  213 (216)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            9999999999998888544     678999   5566665544  89998864

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.3e-26  Score=180.34  Aligned_cols=115  Identities=25%  Similarity=0.282  Sum_probs=99.2

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +..-||.+.+.|+....   ..+.++  .++++.++++.+|+.+..++.|.+|||||||||+||.+|+.+|++|||||||
T Consensus        92 ~~~~tV~~evafg~~n~---g~~~~e--~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt  166 (235)
T COG1122          92 LFGPTVEDEVAFGLENL---GLPREE--IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT  166 (235)
T ss_pred             cccCcHHHHHhhchhhc---CCCHHH--HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence            44689999999985322   112233  6789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+..+..+++.+.      +.||++   .|||+..+..  |+|+++++
T Consensus       167 a~LD~~~~~~l~~~l~~L~~~~~~tii~---~tHd~~~~~~~ad~v~vl~~  214 (235)
T COG1122         167 AGLDPKGRRELLELLKKLKEEGGKTIII---VTHDLELVLEYADRVVVLDD  214 (235)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCeEEE---EeCcHHHHHhhCCEEEEEEC
Confidence            9999999999998655      468999   8889988888  99999875

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.93  E-value=6.2e-26  Score=188.13  Aligned_cols=119  Identities=20%  Similarity=0.270  Sum_probs=99.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+.+||++|+.++....   ..+..+  ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        94 ~~~lfp~ltv~eNi~~~l~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL  168 (375)
T PRK09452         94 SYALFPHMTVFENVAFGLRMQ---KTPAAE--ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL  168 (375)
T ss_pred             CcccCCCCCHHHHHHHHHhhc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            456899999999999874321   111112  456788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+..+.+.++      +.|++|   .|||..+|..  |+++++.+
T Consensus       169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~---vTHd~~ea~~laDri~vl~~  220 (375)
T PRK09452        169 DESLSALDYKLRKQMQNELKALQRKLGITFVF---VTHDQEEALTMSDRIVVMRD  220 (375)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998887543      679999   8888888876  99998864

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.6e-26  Score=175.74  Aligned_cols=117  Identities=21%  Similarity=0.236  Sum_probs=98.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      ..+|..||++||+.++..++.   +.+.+  .+++++++.+.+++.++.|++++++|.||||||.|||||+++|++++||
T Consensus        84 ~glY~RlT~rEnl~~Fa~L~~---l~~~~--~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD  158 (245)
T COG4555          84 RGLYARLTARENLKYFARLNG---LSRKE--IKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD  158 (245)
T ss_pred             cChhhhhhHHHHHHHHHHHhh---hhhhH--HHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence            457889999999998765442   23344  6789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||..++..+.+.+.     |..|+|   -+|.|+++..  |||++|.
T Consensus       159 EP~sGLDi~~~r~~~dfi~q~k~egr~viF---SSH~m~EvealCDrvivlh  207 (245)
T COG4555         159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIF---SSHIMQEVEALCDRVIVLH  207 (245)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhcCCcEEEE---ecccHHHHHHhhheEEEEe
Confidence            9999999999987776433     678999   4566666665  9999874

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.93  E-value=1.1e-25  Score=181.71  Aligned_cols=118  Identities=25%  Similarity=0.443  Sum_probs=94.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+++|+.+....+.   ....+  ..+++.++++.+++.+..++++++||||||||++||+||+++|++||||
T Consensus        89 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD  163 (306)
T PRK13537         89 DNLDPDFTVRENLLVFGRYFG---LSAAA--ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD  163 (306)
T ss_pred             CcCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            356778999999986532221   11112  3457788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+|++.++..  ||+++|.+
T Consensus       164 EPt~gLD~~~~~~l~~~l~~l~~~g~till---~sH~l~e~~~~~d~i~il~~  213 (306)
T PRK13537        164 EPTTGLDPQARHLMWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVIEE  213 (306)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888544     679999   5666666554  88888753

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.93  E-value=1e-25  Score=185.47  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=99.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+|+.+|+++|+.++...... ......+  ..+++.++++.+||.+..++++.+||||||||++|||||+.+|++|||
T Consensus        83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL  160 (353)
T PRK10851         83 YALFRHMTVFDNIAFGLTVLPRRERPNAAA--IKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL  160 (353)
T ss_pred             cccCCCCcHHHHHHhhhhhcccccCCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4688999999999987432100 0111112  456888999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+..+.+.+.      +.|+++   .|||+.+|..  |++++|.+
T Consensus       161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~---vTHd~~ea~~~~Dri~vl~~  212 (353)
T PRK10851        161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVF---VTHDQEEAMEVADRVVVMSQ  212 (353)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998877543      579999   8889998887  99999864

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.93  E-value=1.4e-25  Score=180.29  Aligned_cols=118  Identities=20%  Similarity=0.352  Sum_probs=94.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+....+.   .....  ..+++.++++.+|+.+..++++++||||||||++||+||+++|++||||
T Consensus        75 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  149 (302)
T TIGR01188        75 ASVDEDLTGRENLEMMGRLYG---LPKDE--AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD  149 (302)
T ss_pred             CCCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            356788999999987532211   11111  3457889999999999899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+|++.++..  |++++|.+
T Consensus       150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~---~sH~~~~~~~~~d~v~~l~~  199 (302)
T TIGR01188       150 EPTTGLDPRTRRAIWDYIRALKEEGVTILL---TTHYMEEADKLCDRIAIIDH  199 (302)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543     679999   5666666654  88888753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=6.7e-26  Score=172.48  Aligned_cols=119  Identities=23%  Similarity=0.282  Sum_probs=100.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+++++.||+.||+.-.. .+... .++.+  ..++++.+|..+|+.+..+.+|..||||||||++|||||+.+|+++++
T Consensus       101 ~FNLWsHmtvLeNViEaP-vhVLg-~~k~e--a~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLF  176 (256)
T COG4598         101 HFNLWSHMTVLENVIEAP-VHVLG-VSKAE--AIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLF  176 (256)
T ss_pred             hcchhHHHHHHHHHHhcc-hHhhc-CCHHH--HHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEee
Confidence            367889999999987654 22221 12233  567899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||+|||.-..+++.-++     |.|..+   .||.|.+|..  .+|++|.
T Consensus       177 DEPTSALDPElVgEVLkv~~~LAeEgrTMv~---VTHEM~FAR~Vss~v~fLh  226 (256)
T COG4598         177 DEPTSALDPELVGEVLKVMQDLAEEGRTMVV---VTHEMGFARDVSSHVIFLH  226 (256)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhCCeEEE---EeeehhHHHhhhhheEEee
Confidence            99999999998887776443     779998   8999999999  9999884

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=185.00  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=97.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+|+++|+.++.....   ....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        84 ~~l~~~~tv~eni~~~~~~~~---~~~~~--~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD  158 (369)
T PRK11000         84 YALYPHLSVAENMSFGLKLAG---AKKEE--INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (369)
T ss_pred             cccCCCCCHHHHHHhHHhhcC---CCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            457889999999987642211   11112  4467889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      +.|+++   .|||+.++..  |++++|.+
T Consensus       159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~---vTHd~~~~~~~~d~i~vl~~  209 (369)
T PRK11000        159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIY---VTHDQVEAMTLADKIVVLDA  209 (369)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHhCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998876432      679999   7788887766  99998864

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.7e-25  Score=174.18  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=103.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhh--HH-----hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc
Q psy317           11 WDSMDPKKTPLTRMQISNGMMV--LA-----AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN   83 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~--~~-----~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~   83 (137)
                      ...+|++|||.||+..+...+.  ..     .+.+.+++..+++.++|+.+||.+.++++.++||+|||||++|||||+.
T Consensus        87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~  166 (250)
T COG0411          87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT  166 (250)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence            3568999999999998743210  00     0111233356789999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +|++|+||||++||.+.+...+.+.++      |.||++   ..|||..+++  |||+++.
T Consensus       167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till---IEHdM~~Vm~l~dri~Vl~  224 (250)
T COG0411         167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL---IEHDMKLVMGLADRIVVLN  224 (250)
T ss_pred             CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE---EEeccHHHhhhccEEEecc
Confidence            999999999999999999999888654      468998   9999999999  9999974

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.93  E-value=3e-25  Score=169.61  Aligned_cols=119  Identities=24%  Similarity=0.304  Sum_probs=95.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   .....  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus        91 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD  165 (218)
T cd03255          91 FNLLPDLTALENVELPLLLAG---VPKKE--RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD  165 (218)
T ss_pred             cccCCCCcHHHHHHHHHhhcC---CCHHH--HHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence            356778999999987642211   01111  3457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||+++||..+.+.  ..|++++|.+
T Consensus       166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~v~~l~~  215 (218)
T cd03255         166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE--YADRIIELRD  215 (218)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh--hhcEEEEeeC
Confidence            9999999999998887433      579999777766653  4599998864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.93  E-value=2.5e-25  Score=169.71  Aligned_cols=117  Identities=20%  Similarity=0.326  Sum_probs=92.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE  156 (213)
T cd03259          82 ALFPHLTVAENIAFGLKLRG---VPKAE--IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE  156 (213)
T ss_pred             hhccCCcHHHHHHhHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            46678999999987532110   01111  34567889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.+|++   .+||+.++..  |++++|.+
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~  206 (213)
T cd03259         157 PLSALDAKLREELREELKELQRELGITTIY---VTHDQEEALALADRIAVMNE  206 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EecCHHHHHHhcCEEEEEEC
Confidence            999999999998888543      679999   5555555444  88888753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=3.3e-25  Score=171.50  Aligned_cols=119  Identities=19%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....  ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        86 ~~~~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD  161 (235)
T cd03261          86 GALFDSLTVFENVAFPLREHT--RLSEEE--IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD  161 (235)
T ss_pred             cccCCCCcHHHHHHHHHhhcc--CCCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            346778999999987532110  011112  3457788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---vsH~~~~~~~~~d~v~~l~~  212 (235)
T cd03261         162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIM---VTHDLDTAFAIADRIAVLYD  212 (235)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhcCEEEEEEC
Confidence            9999999999998887543      679999   6667776655  89988853

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.93  E-value=4.4e-25  Score=169.00  Aligned_cols=118  Identities=23%  Similarity=0.323  Sum_probs=92.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++.....   ....+  ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||
T Consensus        93 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE  167 (221)
T TIGR02211        93 HLLPDFTALENVAMPLLIGK---KSVKE--AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE  167 (221)
T ss_pred             ccCCCCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            46778999999987532110   11111  34567889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.+|+++||..+.+.. . |++++|.+
T Consensus       168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~-d~v~~l~~  216 (221)
T TIGR02211       168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-L-DRVLEMKD  216 (221)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-c-CEEEEEeC
Confidence            999999999998888553      6799996655544433 1 99998863

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.92  E-value=4.2e-25  Score=179.65  Aligned_cols=118  Identities=21%  Similarity=0.268  Sum_probs=97.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        51 ~~l~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD  125 (325)
T TIGR01187        51 YALFPHMTVEENVAFGLKMR---KVPRAE--IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD  125 (325)
T ss_pred             ccccCCCcHHHHHHHHHhhc---CCCHHH--HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            35788899999999864221   111112  3457888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      +.||++   .|||+.++..  |++++|.+
T Consensus       126 EP~s~LD~~~~~~l~~~l~~l~~~~g~tiii---vTHd~~e~~~~~d~i~vl~~  176 (325)
T TIGR01187       126 EPLSALDKKLRDQMQLELKTIQEQLGITFVF---VTHDQEEAMTMSDRIAIMRK  176 (325)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887443      679999   7778887766  99998864

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.92  E-value=5.9e-25  Score=167.44  Aligned_cols=118  Identities=23%  Similarity=0.297  Sum_probs=94.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+.....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        81 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  155 (211)
T cd03264          81 FGVYPNFTVREFLDYIAWLK---GIPSKE--VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD  155 (211)
T ss_pred             CcccccCCHHHHHHHHHHHh---CCCHHH--HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            44677889999998753221   111112  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.    +.||++   .+||+.++..  |+++++.+
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~  204 (211)
T cd03264         156 EPTAGLDPEERIRFRNLLSELGEDRIVIL---STHIVEDVESLCNQVAVLNK  204 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888655    568999   5666666544  88888754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.92  E-value=5.5e-25  Score=167.76  Aligned_cols=118  Identities=24%  Similarity=0.343  Sum_probs=94.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        88 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD  162 (214)
T TIGR02673        88 FRLLPDRTVYENVALPLEVR---GKKERE--IQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD  162 (214)
T ss_pred             hhhccCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            35677899999998753211   001111  3457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+.++..  |+++++.+
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~i~~l~~  212 (214)
T TIGR02673       163 EPTGNLDPDLSERILDLLKRLNKRGTTVIV---ATHDLSLVDRVAHRVIILDD  212 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEecC
Confidence            9999999999998888543     679999   5566666654  99998864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.92  E-value=5e-25  Score=168.40  Aligned_cols=117  Identities=21%  Similarity=0.355  Sum_probs=94.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.+.....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        88 ~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE  162 (218)
T cd03266          88 GLYDRLTARENLEYFAGLY---GLKGDE--LTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE  162 (218)
T ss_pred             ccCcCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            5677799999998653221   111112  34678889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     +.||++   .+||+..+..  |++++|.+
T Consensus       163 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~i~~l~~  211 (218)
T cd03266         163 PTTGLDVMATRALREFIRQLRALGKCILF---STHIMQEVERLCDRVVVLHR  211 (218)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            999999999998887543     679999   5666665554  88888864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=6e-25  Score=183.65  Aligned_cols=118  Identities=19%  Similarity=0.326  Sum_probs=97.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+++|+.+|+.++....   .+...+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus       115 ~~l~~~~Tv~enl~~~~~~~---~~~~~~--~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD  189 (400)
T PRK10070        115 FALMPHMTVLDNTAFGMELA---GINAEE--RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD  189 (400)
T ss_pred             CcCCCCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            45788899999998764221   111112  3457888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+.+.+      .+.||++   .+||+.++..  |++++|.+
T Consensus       190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIi---vTHd~~~~~~~~Dri~vL~~  240 (400)
T PRK10070        190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVF---ISHDLDEAMRIGDRIAIMQN  240 (400)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHCCCeEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999999888754      2679999   7788888766  99998864

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.6e-25  Score=180.14  Aligned_cols=118  Identities=24%  Similarity=0.343  Sum_probs=95.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+++|++||||
T Consensus        91 ~~l~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD  165 (343)
T PRK11153         91 FNLLSSRTVFDNVALPLELA---GTPKAE--IKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD  165 (343)
T ss_pred             CccCCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            45777899999998764221   111112  3457889999999999899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .+||+..+..  |++++|.+
T Consensus       166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiil---vtH~~~~i~~~~d~v~~l~~  216 (343)
T PRK11153        166 EATSALDPATTRSILELLKDINRELGLTIVL---ITHEMDVVKRICDRVAVIDA  216 (343)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543      679999   6667776655  89988853

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.8e-25  Score=174.06  Aligned_cols=117  Identities=22%  Similarity=0.366  Sum_probs=98.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      |..++.|..||.+.+.-+...+   +.  .+  ..+++.++|+.|||. .+++++|.+|||||+||++|||||+.+|++|
T Consensus        91 p~~SLnP~~tv~~~l~Epl~~~---~~--~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklL  163 (252)
T COG1124          91 PYSSLNPRRTVGRILSEPLRPH---GL--SK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL  163 (252)
T ss_pred             CccccCcchhHHHHHhhhhccC---Cc--cH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEE
Confidence            6677889999999998764331   11  12  345688999999996 5789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||||+||+..+.++++.+.      +.|.++   .+||++.+..  ||+.++.
T Consensus       164 IlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~---IsHdl~~v~~~cdRi~Vm~  216 (252)
T COG1124         164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLF---ISHDLALVEHMCDRIAVMD  216 (252)
T ss_pred             EecCchhhhcHHHHHHHHHHHHHHHHhcCceEEE---EeCcHHHHHHHhhheeeee
Confidence            9999999999999999999654      679999   8999998887  8888764

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.92  E-value=6.2e-25  Score=167.35  Aligned_cols=117  Identities=18%  Similarity=0.299  Sum_probs=93.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++..|+++|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE  156 (213)
T cd03301          82 ALYPHMTVYDNIAFGLKLR---KVPKDE--IDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE  156 (213)
T ss_pred             hhccCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            4667899999998753211   111112  34577889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~  206 (213)
T cd03301         157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIY---VTHDQVEAMTMADRIAVMND  206 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence            999999999998888542      679999   5556655544  88888754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.92  E-value=5.9e-25  Score=182.75  Aligned_cols=119  Identities=19%  Similarity=0.301  Sum_probs=99.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++++|+++|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+++|++|||
T Consensus       114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~--~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl  188 (382)
T TIGR03415       114 KFALMPWLTVEENVAFGLEMQ---GMPEAE--RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM  188 (382)
T ss_pred             CCcCCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            356788899999999874221   111112  446788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+.+.+.      +.||++   .+||+.++.+  ||++++.|
T Consensus       189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~---iTHdl~e~~~l~DrI~vl~~  240 (382)
T TIGR03415       189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIF---VSHDLDEALKIGNRIAIMEG  240 (382)
T ss_pred             ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998888543      679999   8889998877  99998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.2e-25  Score=168.97  Aligned_cols=119  Identities=24%  Similarity=0.270  Sum_probs=92.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        96 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD  170 (233)
T PRK11629         96 HHLLPDFTALENVAMPLLIGK---KKPAE--INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD  170 (233)
T ss_pred             cccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            356778899999987532111   01112  3457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.+|+++||..+.+..+  +++++|.+
T Consensus       171 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~--~~~~~l~~  220 (233)
T PRK11629        171 EPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM--SRQLEMRD  220 (233)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--CEEEEEEC
Confidence            9999999999998887432      67999955554444332  68877753

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.92  E-value=8.1e-25  Score=179.29  Aligned_cols=118  Identities=25%  Similarity=0.405  Sum_probs=94.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+....+.   ....+  ..+++.++++.+|+.+..++++++||||||||++||+||+++|++||||
T Consensus       123 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        123 DNLDLEFTVRENLLVFGRYFG---MSTRE--IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             ccCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            346688999999986432221   11111  3456778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+|++.++..  |+|++|.+
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~g~tili---sSH~l~e~~~~~d~i~il~~  247 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVLEA  247 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999999988543     679999   5566666655  88888764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=9.6e-25  Score=166.10  Aligned_cols=115  Identities=24%  Similarity=0.277  Sum_probs=91.2

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ++.+|+.+|+.++....   ......  ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||||
T Consensus        88 ~~~~t~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  162 (211)
T cd03225          88 FFGPTVEEEVAFGLENL---GLPEEE--IEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT  162 (211)
T ss_pred             cCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            56789999998653211   001111  3456788999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.     +.+|++   .+||+.++..  |+++++.+
T Consensus       163 ~~LD~~~~~~~~~~l~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~  209 (211)
T cd03225         163 AGLDPAGRRELLELLKKLKAEGKTIII---VTHDLDLLLELADRVIVLED  209 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            9999999998888543     569999   5556665544  89988853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.92  E-value=9.1e-25  Score=167.54  Aligned_cols=117  Identities=26%  Similarity=0.384  Sum_probs=93.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++.....   ....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE  157 (220)
T cd03265          83 SVDDELTGWENLYIHARLYG---VPGAE--RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE  157 (220)
T ss_pred             cccccCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            46777999999987532211   11111  34578899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.+|++   .+||+..+..  |++++|.+
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---~tH~~~~~~~~~d~i~~l~~  207 (220)
T cd03265         158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILL---TTHYMEEAEQLCDRVAIIDH  207 (220)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            999999999998888543      679999   5666666654  88888754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.92  E-value=9.8e-25  Score=167.35  Aligned_cols=116  Identities=22%  Similarity=0.335  Sum_probs=92.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        83 ~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE  157 (220)
T cd03293          83 ALLPWLTVLDNVALGLELQG---VPKAE--ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE  157 (220)
T ss_pred             ccccCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            46677999999987532211   11111  34578889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||+.++..+++.+.      +.+|++   .+||+..+..  |++++|.
T Consensus       158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~  206 (220)
T cd03293         158 PFSALDALTREQLQEELLDIWRETGKTVLL---VTHDIDEAVFLADRVVVLS  206 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EecCHHHHHHhCCEEEEEE
Confidence            999999999998888542      679999   5556655444  8988886

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.92  E-value=2.7e-25  Score=168.89  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .++|..+||.+|+.++.....  ... ..  ..++++.++..+||.++.++.|.+|||||||||++||||+++-+||+||
T Consensus        80 nNLFaHLtV~qNigLGl~P~L--kL~-a~--~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD  154 (231)
T COG3840          80 NNLFAHLTVAQNIGLGLSPGL--KLN-AE--QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD  154 (231)
T ss_pred             cccchhhhhhhhhcccCCccc--ccC-HH--HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence            568999999999998853221  111 22  4578899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||.-+.+.+...      ++.|++|.||   ....|.+  ++++++.+
T Consensus       155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH---~~~Da~~ia~~~~fl~~  205 (231)
T COG3840         155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTH---HPEDAARIADRVVFLDN  205 (231)
T ss_pred             CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeC---CHHHHHHhhhceEEEeC
Confidence            999999999998777643      3779999554   4555555  88887753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.92  E-value=1e-24  Score=166.11  Aligned_cols=118  Identities=20%  Similarity=0.256  Sum_probs=93.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   ....+  ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++|||
T Consensus        87 ~~~~~~~t~~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  161 (214)
T cd03292          87 FRLLPDRNVYENVAFALEVTG---VPPRE--IRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD  161 (214)
T ss_pred             chhccCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            357788999999987532111   01111  3457788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.++     +.||+++   +||...+..  |++++|.+
T Consensus       162 EPt~~LD~~~~~~~~~~l~~~~~~~~tiiiv---tH~~~~~~~~~d~i~~l~~  211 (214)
T cd03292         162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVA---THAKELVDTTRHRVIALER  211 (214)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEE---eCCHHHHHHhCCEEEEEeC
Confidence            9999999999998888543     6789994   455555443  88888753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.92  E-value=8.1e-25  Score=178.66  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=96.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+.++..... ......+  ..+++.++++.+|+. ...++++++||||||||++|||||+.+|++||+|
T Consensus       110 ~l~p~~tv~~~i~~~l~~~~-~~~~~~~--~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD  186 (331)
T PRK15079        110 SLNPRMTIGEIIAEPLRTYH-PKLSRQE--VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD  186 (331)
T ss_pred             hcCCCCCHHHHHHHHHHHhc-cCCCHHH--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            47888999999987532211 0111122  456788999999995 5679999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.      +.||++   .|||+.++..  |+++++.+
T Consensus       187 EPts~LD~~~~~~i~~lL~~l~~~~~~til~---iTHdl~~~~~~~dri~vl~~  237 (331)
T PRK15079        187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIF---IAHDLAVVKHISDRVLVMYL  237 (331)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887543      679999   8899999886  99998853

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.92  E-value=1.1e-24  Score=175.28  Aligned_cols=118  Identities=20%  Similarity=0.314  Sum_probs=94.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++++|+.+|+.+......   ....+  ..+++.++++.+|+.+..+++++.||||||||++||+||+++|++||||
T Consensus        84 ~~l~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD  158 (301)
T TIGR03522        84 NPLYLDMYVREYLQFIAGIYG---MKGQL--LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD  158 (301)
T ss_pred             CCCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            457888999999987542211   11112  3457888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.    +.||++   .+|++.++..  ||+++|.+
T Consensus       159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii---~sH~l~~~~~~~d~i~~l~~  207 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKNIGKDKTIIL---STHIMQEVEAICDRVIIINK  207 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888554    569999   5555655544  88888753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.92  E-value=1.1e-24  Score=175.34  Aligned_cols=118  Identities=25%  Similarity=0.426  Sum_probs=93.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+.....   ......  ..+++.++++.+|+.+..++++++||||||||++|||||+++|++||||
T Consensus        86 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  160 (303)
T TIGR01288        86 DNLDPEFTVRENLLVFGRYF---GMSTRE--IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD  160 (303)
T ss_pred             ccCCcCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34677899999998643211   111111  3456778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       161 EPt~gLD~~~~~~l~~~l~~~~~~g~til~---~sH~~~~~~~~~d~i~~l~~  210 (303)
T TIGR01288       161 EPTTGLDPHARHLIWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVLES  210 (303)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888553     679999   5666666654  88888753

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.92  E-value=1.4e-24  Score=167.39  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=93.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+++|+.++.....   .....  ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  158 (232)
T cd03218          84 ASIFRKLTVEENILAVLEIRG---LSKKE--REEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD  158 (232)
T ss_pred             ccccccCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            456778999999987532111   01111  3456788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.||++   .+||+..+..  |++++|.+
T Consensus       159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  208 (232)
T cd03218         159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLI---TDHNVRETLSITDRAYIIYE  208 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887443     679999   5666665555  88888764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.92  E-value=1.4e-24  Score=172.00  Aligned_cols=118  Identities=20%  Similarity=0.351  Sum_probs=94.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus       111 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD  185 (269)
T cd03294         111 FALLPHRTVLENVAFGLEVQ---GVPRAE--REERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD  185 (269)
T ss_pred             cccCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            35677899999998753211   001111  3456788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .+||+.++..  |++++|.+
T Consensus       186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii---~tH~~~~~~~~~d~v~~l~~  236 (269)
T cd03294         186 EAFSALDPLIRREMQDELLRLQAELQKTIVF---ITHDLDEALRLGDRIAIMKD  236 (269)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999998888432      679999   5666666554  88888753

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.7e-24  Score=177.91  Aligned_cols=116  Identities=19%  Similarity=0.341  Sum_probs=95.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+|+++|+.++....  .   ..+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        84 ~~l~~~~tv~enl~~~~~~~--~---~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD  156 (354)
T TIGR02142        84 ARLFPHLSVRGNLRYGMKRA--R---PSE--RRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD  156 (354)
T ss_pred             CccCCCCcHHHHHHHHhhcc--C---hhH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            45788899999998753211  1   112  3456889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .|||+.++..  |++++|.+
T Consensus       157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiii---vtH~~~~~~~~~d~i~~l~~  207 (354)
T TIGR02142       157 EPLAALDDPRKYEILPYLERLHAEFGIPILY---VSHSLQEVLRLADRVVVLED  207 (354)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence            9999999999998887543      568999   6777777765  89988864

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.92  E-value=1.4e-24  Score=165.04  Aligned_cols=114  Identities=25%  Similarity=0.380  Sum_probs=93.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....       ..  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        81 ~~~~~~~tv~e~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  151 (208)
T cd03268          81 PGFYPNLTARENLRLLARLL-------GI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD  151 (208)
T ss_pred             CccCccCcHHHHHHHHHHhc-------CC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            35677899999998753211       11  2346778999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+..+..  |++++|.+
T Consensus       152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~v~~l~~  201 (208)
T cd03268         152 EPTNGLDPDGIKELRELILSLRDQGITVLI---SSHLLSEIQKVADRIGIINK  201 (208)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHHhcCEEEEEEC
Confidence            9999999999998887543     679999   6677776654  89988864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.92  E-value=1.6e-24  Score=167.33  Aligned_cols=121  Identities=21%  Similarity=0.305  Sum_probs=94.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhh-------hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAM-------FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN   84 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~-------~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~   84 (137)
                      +.+++.+|+.+|+.++.........       ....  ..+++.++++.+|+....++++.+||||||||++|||||+.+
T Consensus        84 ~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  161 (236)
T cd03219          84 PRLFPELTVLENVMVAAQARTGSGLLLARARREERE--ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD  161 (236)
T ss_pred             cccccCCCHHHHHHHHHhhccccccccccccccHHH--HHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            4577889999999876422110000       0011  345688899999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |++|||||||+|||+.++..+++.+.     +.||++   .+||+..+..  |+++++.+
T Consensus       162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~  218 (236)
T cd03219         162 PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL---VEHDMDVVMSLADRVTVLDQ  218 (236)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence            99999999999999999998888553     679999   5566666544  88888753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=2e-24  Score=164.06  Aligned_cols=111  Identities=25%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +..+|+.+|+.++...    .   ..  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        84 ~~~~tv~e~l~~~~~~----~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  154 (205)
T cd03226          84 LFTDSVREELLLGLKE----L---DA--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT  154 (205)
T ss_pred             hhhccHHHHHhhhhhh----c---Cc--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            3467999999764311    0   11  2356788999999999899999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+.+.+.     +.+|++   .+||+.++..  |++++|.+
T Consensus       155 ~~LD~~~~~~l~~~l~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  201 (205)
T cd03226         155 SGLDYKNMERVGELIRELAAQGKAVIV---ITHDYEFLAKVCDRVLLLAN  201 (205)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999998888543     669999   5566666554  89998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.7e-24  Score=173.02  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      ...|+++|+.++....   .....+  ..+++.++++.+|+.  +..++++..||||||||++|||||+.+|++||||||
T Consensus        97 ~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEP  171 (287)
T PRK13637         97 FEETIEKDIAFGPINL---GLSEEE--IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP  171 (287)
T ss_pred             ccccHHHHHHhHHHHC---CCCHHH--HHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            4579999998754221   111112  445788999999997  678999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      |.||++   .|||+.++..  |||++|++
T Consensus       172 t~gLD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~drv~~l~~  220 (287)
T PRK13637        172 TAGLDPKGRDEILNKIKELHKEYNMTIIL---VSHSMEDVAKLADRIIVMNK  220 (287)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999888542      679999   7777777755  99999864

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.92  E-value=2.1e-24  Score=167.19  Aligned_cols=120  Identities=21%  Similarity=0.319  Sum_probs=93.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++..... .......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        63 ~~l~~~~tv~e~l~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  139 (230)
T TIGR01184        63 YSLLPWLTVRENIALAVDRVL-PDLSKSE--RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD  139 (230)
T ss_pred             cccCCCCCHHHHHHHHHHhcc-cCCCHHH--HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            346777999999987521100 0111111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       140 EPt~gLD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~  190 (230)
T TIGR01184       140 EPFGALDALTRGNLQEELMQIWEEHRVTVLM---VTHDVDEALLLSDRVVMLTN  190 (230)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEeC
Confidence            9999999999998888543      569999   5666666554  89988863

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.92  E-value=3.1e-24  Score=163.98  Aligned_cols=116  Identities=22%  Similarity=0.343  Sum_probs=92.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.... ..    ..  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus        84 ~~~~~~~t~~~~l~~~~~~~-~~----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  156 (214)
T cd03297          84 YALFPHLNVRENLAFGLKRK-RN----RE--DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD  156 (214)
T ss_pred             CccCCCCCHHHHHHHHHhhC-CH----HH--HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            35677899999998653211 00    11  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.+++.+++.+.      +.||++   .+||+.+...  |++++|.+
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  207 (214)
T cd03297         157 EPFSALDRALRLQLLPELKQIKKNLNIPVIF---VTHDLSEAEYLADRIVVMED  207 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EecCHHHHHHhcCEEEEEEC
Confidence            9999999999998887543      678999   5566666544  88888753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.92  E-value=2.2e-24  Score=165.65  Aligned_cols=118  Identities=24%  Similarity=0.283  Sum_probs=92.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        88 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (222)
T PRK10908         88 HHLLMDRTVYDNVAIPLIIA---GASGDD--IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD  162 (222)
T ss_pred             ccccccccHHHHHHhHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            34567899999998753211   101111  3446778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+..+..  |++++|.+
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  212 (222)
T PRK10908        163 EPTGNLDDALSEGILRLFEEFNRVGVTVLM---ATHDIGLISRRSYRMLTLSD  212 (222)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999988877544     579999   5555555544  88888753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.92  E-value=1.9e-24  Score=164.66  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=94.1

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++.+|+.+|+.++...... .  ...  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus        78 ~~~~~~~~tv~enl~~~~~~~~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll  152 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLSPGLK-L--TAE--DRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL  152 (211)
T ss_pred             ccccCCCCcHHHHHhcccccccC-c--cHH--HHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            34567789999999865321100 0  011  345678899999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      +.+|++   .+||+.++..  |++++|.+
T Consensus       153 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  204 (211)
T cd03298         153 DEPFAALDPALRAEMLDLVLDLHAETKMTVLM---VTHQPEDAKRLAQRVVFLDN  204 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHhhhCEEEEEEC
Confidence            99999999999998888543      679999   5566665544  88888753

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.92  E-value=2.1e-24  Score=167.58  Aligned_cols=121  Identities=16%  Similarity=0.212  Sum_probs=93.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+.+|+.++...... .......  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||
T Consensus        83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  160 (239)
T cd03296          83 YALFRHMTVFDNVAFGLRVKPRSERPPEAE--IRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL  160 (239)
T ss_pred             CcccCCCCHHHHHhhhhhhccccccCCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3467789999999875322110 0000011  345678899999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      +.||++   .+||+..+..  |++++|.+
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii---~sH~~~~~~~~~d~i~~l~~  212 (239)
T cd03296         161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVF---VTHDQEEALEVADRVVVMNK  212 (239)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998887543      679999   5556655544  88888753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.91  E-value=2.4e-24  Score=163.98  Aligned_cols=118  Identities=17%  Similarity=0.266  Sum_probs=92.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+......   .....  ..+++.++++.+|+....++++.+||||||||++||+||+.+|+++|||
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD  153 (210)
T cd03269          79 RGLYPKMKVIDQLVYLAQLKG---LKKEE--ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD  153 (210)
T ss_pred             CcCCcCCcHHHHHHHHHHHcC---CChHH--HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            356778999999986532211   11112  3457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|+++||   |...+..  |+++++.+
T Consensus       154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH---~~~~~~~~~d~i~~l~~  203 (210)
T cd03269         154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTH---QMELVEELCDRVLLLNK  203 (210)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CHHHHHHhhhEEEEEeC
Confidence            9999999999998887554     569999554   5554433  88887754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.91  E-value=2.3e-24  Score=164.91  Aligned_cols=118  Identities=22%  Similarity=0.372  Sum_probs=93.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  158 (220)
T cd03263          84 DALFDELTVREHLRFYARLKG---LPKSE--IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD  158 (220)
T ss_pred             CCccccCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            346678999999987532211   11111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  207 (220)
T cd03263         159 EPTSGLDPASRRAIWDLILEVRKGRSIIL---TTHSMDEAEALCDRIAIMSD  207 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhcCEEEEEEC
Confidence            9999999999998888654    468999   5666666654  88888754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.91  E-value=2.7e-24  Score=165.99  Aligned_cols=118  Identities=22%  Similarity=0.317  Sum_probs=92.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   .....  ..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        91 ~~~~~~~t~~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD  165 (233)
T cd03258          91 FNLLSSRTVFENVALPLEIAG---VPKAE--IEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD  165 (233)
T ss_pred             cccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            456778999999987532111   11111  3456788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||+++   +||...+..  |++++|.+
T Consensus       166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~---sH~~~~~~~~~d~i~~l~~  216 (233)
T cd03258         166 EATSALDPETTQSILALLRDINRELGLTIVLI---THEMEVVKRICDRVAVMEK  216 (233)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE---eCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887543      6799994   555555543  88888753

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.91  E-value=3.2e-24  Score=165.98  Aligned_cols=122  Identities=17%  Similarity=0.187  Sum_probs=93.9

Q ss_pred             CCCCCCCHHHHHHhhhhhh---hHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMM---VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~---~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+++.+|+.+|+.++....   .............+++.++++.+|+....++++.+||||||||++|||||+.+|++||
T Consensus        88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  167 (241)
T cd03256          88 NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL  167 (241)
T ss_pred             cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4677899999998653110   0000000011134567889999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.      |.+|++   .+||+..+..  |++++|.+
T Consensus       168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~tH~~~~~~~~~d~v~~l~~  220 (241)
T cd03256         168 ADEPVASLDPASSRQVMDLLKRINREEGITVIV---SLHQVDLAREYADRIVGLKD  220 (241)
T ss_pred             EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999998887543      679999   6667777664  99988864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.91  E-value=3.6e-24  Score=162.92  Aligned_cols=119  Identities=25%  Similarity=0.351  Sum_probs=93.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....  .....+  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus        85 ~~~~~~~t~~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  160 (213)
T cd03262          85 FNLFPHLTVLENITLAPIKVK--GMSKAE--AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD  160 (213)
T ss_pred             cccCCCCcHHHHHHhHHHHhc--CCCHHH--HHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            446778999999987532110  111111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+.++..  |+++++.+
T Consensus       161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~---~sh~~~~~~~~~d~i~~l~~  210 (213)
T cd03262         161 EPTSALDPELVGEVLDVMKDLAEEGMTMVV---VTHEMGFAREVADRVIFMDD  210 (213)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            9999999999998887554     679999   5566666544  89988864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.4e-24  Score=176.04  Aligned_cols=112  Identities=20%  Similarity=0.342  Sum_probs=94.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+|+++|+.++..    .     .  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        85 ~~l~~~~tv~enl~~~~~----~-----~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD  153 (352)
T PRK11144         85 ARLFPHYKVRGNLRYGMA----K-----S--MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             cccCCCCcHHHHHHhhhh----h-----h--hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            457889999999986521    1     1  2346788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      +.||++   .|||+.++..  |++++|.+
T Consensus       154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~---vTHd~~~~~~~~d~i~~l~~  204 (352)
T PRK11144        154 EPLASLDLPRKRELLPYLERLAREINIPILY---VSHSLDEILRLADRVVVLEQ  204 (352)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEE---EecCHHHHHHhCCEEEEEeC
Confidence            9999999999998887543      568999   7778877766  99988864

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.5e-24  Score=171.02  Aligned_cols=116  Identities=20%  Similarity=0.203  Sum_probs=94.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++..|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        91 ~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP  165 (274)
T PRK13647         91 QVFSSTVWDDVAFGPVNM---GLDKDE--VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP  165 (274)
T ss_pred             hhccCcHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            345689999998753211   111112  345688899999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.     |.||++   .+||+.++..  ||+++|++
T Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tili---~tH~~~~~~~~~d~i~~l~~  213 (274)
T PRK13647        166 MAYLDPRGQETLMEILDRLHNQGKTVIV---ATHDVDLAAEWADQVIVLKE  213 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999998888543     679999   7777877755  99998864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.91  E-value=4.1e-24  Score=164.52  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=93.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....   .....  ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++||||
T Consensus        97 ~~l~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD  171 (228)
T PRK10584         97 FMLIPTLNALENVELPALLRG---ESSRQ--SRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD  171 (228)
T ss_pred             cccCCCcCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            356777899999986532110   01112  3457889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.+|+++||..+.+..  .|+++++++
T Consensus       172 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~--~d~i~~l~~  221 (228)
T PRK10584        172 EPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR--CDRRLRLVN  221 (228)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence            9999999999998888552      6799996666554422  389988864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.8e-24  Score=173.66  Aligned_cols=115  Identities=21%  Similarity=0.256  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      +...||++|+.++....   .....+  ..+++.++++.+||. +..++++.+||||||||++||+||+.+|++||||||
T Consensus       118 l~~~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEP  192 (305)
T PRK13651        118 LFEQTIEKDIIFGPVSM---GVSKEE--AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEP  192 (305)
T ss_pred             cccccHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            34579999998764211   111112  456788999999996 678999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.     |.||++   .+||+..+..  ||++++.+
T Consensus       193 t~~LD~~~~~~l~~~l~~l~~~g~tiii---vtHd~~~~~~~adrv~vl~~  240 (305)
T PRK13651        193 TAGLDPQGVKEILEIFDNLNKQGKTIIL---VTHDLDNVLEWTKRTIFFKD  240 (305)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeeCHHHHHHhCCEEEEEEC
Confidence            99999999998888543     679999   7788877665  99998864

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.1e-24  Score=167.30  Aligned_cols=117  Identities=18%  Similarity=0.292  Sum_probs=101.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.++|++|+.+|+.|+..+..   ..+..  ..+++.+.+..+|+++..++++.+||||||||+.|||||+-+|++|+||
T Consensus        83 ~~LlPWl~~~dNvafgL~l~G---i~k~~--R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD  157 (259)
T COG4525          83 EALLPWLNVIDNVAFGLQLRG---IEKAQ--RREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD  157 (259)
T ss_pred             CccchhhHHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence            568999999999999865432   12223  4568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHh------hccceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYER------KVDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~------~~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+++||.-.++++-+.      ..|+.+++   .|||+++|.-  .|++++|
T Consensus       158 EPfgAlDa~tRe~mQelLldlw~~tgk~~ll---iTH~ieEAlflatrLvvls  207 (259)
T COG4525         158 EPFGALDALTREQMQELLLDLWQETGKQVLL---ITHDIEEALFLATRLVVLS  207 (259)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhCCeEEE---EeccHHHHHhhhheeEEec
Confidence            99999999999877653      44889999   8999999987  8998887

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.91  E-value=5.2e-24  Score=165.97  Aligned_cols=119  Identities=22%  Similarity=0.318  Sum_probs=93.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....  ......  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus        94 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLD  169 (250)
T PRK11264         94 FNLFPHRTVLENIIEGPVIVK--GEPKEE--ATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD  169 (250)
T ss_pred             cccCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEe
Confidence            356778999999987531110  101111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+.++..  |++++|.+
T Consensus       170 EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~---~tH~~~~~~~~~d~i~~l~~  219 (250)
T PRK11264        170 EPTSALDPELVGEVLNTIRQLAQEKRTMVI---VTHEMSFARDVADRAIFMDQ  219 (250)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999998887543     679999   5666666544  88888753

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=4.2e-24  Score=165.66  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             CCCCCCCHHHHHHhhhhhh---hHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMM---VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~---~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+++.+|+.+|+.++....   .............+++.++++.+|+....++++.+||||||||++|||||+.+|++||
T Consensus        89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  168 (243)
T TIGR02315        89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL  168 (243)
T ss_pred             cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4677899999998653110   0000000011134578889999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.      +.+|++   .+||+..+..  |++++|.+
T Consensus       169 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~tH~~~~~~~~~d~v~~l~~  221 (243)
T TIGR02315       169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVII---NLHQVDLAKKYADRIVGLKA  221 (243)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence            999999999999998877443      578999   6666666654  89988864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.8e-24  Score=170.96  Aligned_cols=113  Identities=20%  Similarity=0.276  Sum_probs=91.9

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      .+|+.+|+.++....   .....+  ..+++.++++.+|++ ...++++++||||||||++|||||+.+|++|||||||+
T Consensus       100 ~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~  174 (287)
T PRK13641        100 ENTVLKDVEFGPKNF---GFSEDE--AKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA  174 (287)
T ss_pred             cchHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            589999998653211   111112  345788999999997 67899999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+.+.+.     |.||++   .+||+..+..  |++++|++
T Consensus       175 gLD~~~~~~l~~~l~~l~~~g~tvli---vsH~~~~~~~~~d~v~~l~~  220 (287)
T PRK13641        175 GLDPEGRKEMMQLFKDYQKAGHTVIL---VTHNMDDVAEYADDVLVLEH  220 (287)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999998887544     679999   6777877765  99999864

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.4e-24  Score=168.07  Aligned_cols=117  Identities=21%  Similarity=0.324  Sum_probs=93.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD  153 (255)
T PRK11248         79 EGLLPWRNVQDNVAFGLQLA---GVEKMQ--RLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD  153 (255)
T ss_pred             CccCCCCcHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34677799999998753211   101111  3456889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+++.+.      |.+|++   .+||+.++..  |++++|.
T Consensus       154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii---vsH~~~~~~~~~d~i~~l~  203 (255)
T PRK11248        154 EPFGALDAFTREQMQTLLLKLWQETGKQVLL---ITHDIEEAVFMATELVLLS  203 (255)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence            9999999999998887432      679999   5566666655  8998885

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.6e-24  Score=173.90  Aligned_cols=118  Identities=20%  Similarity=0.278  Sum_probs=96.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+.+.+|+.+++........  .....+  ..+++.++++.+||. ...++++++||||||||++|||||+.+|++||+|
T Consensus       104 ~l~p~~~v~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD  179 (327)
T PRK11308        104 SLNPRKKVGQILEEPLLINT--SLSAAE--RREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD  179 (327)
T ss_pred             hcCCccCHHHHHHHHHHHcc--CCCHHH--HHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            57788999999875432211  111112  456788999999996 4679999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+.++++.+.      |.||++   .|||+..+..  |+|+++.+
T Consensus       180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~---iTHdl~~~~~~adrv~vm~~  230 (327)
T PRK11308        180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVF---ISHDLSVVEHIADEVMVMYL  230 (327)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543      679999   8889998876  99998863

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.8e-24  Score=173.65  Aligned_cols=118  Identities=18%  Similarity=0.252  Sum_probs=94.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+.+.+|+.+++........  .....+  ..+++.++|+.+||.+   ..++++++|||||||||+|||||+.+|++||
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~--~~~~~~--~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli  176 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQ--GGNKKT--RRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI  176 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            57788999888765432111  111112  4567889999999964   4688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +||||+|||+.++.++++.+.      |.++++   .|||+..+..  |+|+++.+
T Consensus       177 lDEPts~LD~~~~~~il~lL~~l~~~~g~til~---iTHdl~~~~~~adri~vm~~  229 (326)
T PRK11022        177 ADEPTTALDVTIQAQIIELLLELQQKENMALVL---ITHDLALVAEAAHKIIVMYA  229 (326)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999998888543      679999   8889988865  99998853

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.8e-24  Score=169.77  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++..|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        93 ~~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP  167 (279)
T PRK13650         93 QFVGATVEDDVAFGLENK---GIPHEE--MKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA  167 (279)
T ss_pred             hcccccHHHHHHhhHHhC---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            466789999998753211   111112  345788999999999989999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      |.||+++||..+.+.  ..|++++|.+
T Consensus       168 t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~--~~dri~~l~~  215 (279)
T PRK13650        168 TSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA--LSDRVLVMKN  215 (279)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence            99999999998887532      679999555544442  2489988864

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.91  E-value=6e-24  Score=165.27  Aligned_cols=118  Identities=19%  Similarity=0.350  Sum_probs=91.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc--ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE--HKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~--~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      +.+++.+|+++|+.++....   ......  ..+++.++++.+|+..  ..++++.+||||||||++|||||+.+|++||
T Consensus        84 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  158 (242)
T cd03295          84 IGLFPHMTVEENIALVPKLL---KWPKEK--IRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL  158 (242)
T ss_pred             ccccCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            35677899999998753221   111111  3456788999999985  7899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.      +.+|+++||   +...+..  |++++|.+
T Consensus       159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH---~~~~~~~~~d~i~~l~~  211 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH---DIDEAFRLADRIAIMKN  211 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec---CHHHHHHhCCEEEEEEC
Confidence            999999999999998877433      678999555   5554433  88888753

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=5.8e-24  Score=170.09  Aligned_cols=113  Identities=23%  Similarity=0.283  Sum_probs=92.0

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ..|+.+|+.++....   ..+..+  ...++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||||+
T Consensus        99 ~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~  173 (288)
T PRK13643         99 EETVLKDVAFGPQNF---GIPKEK--AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA  173 (288)
T ss_pred             cchHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence            469999998764211   111122  456788999999996 57799999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+++.+.     |.||++   .|||+.++..  ||++++.+
T Consensus       174 gLD~~~~~~l~~~l~~l~~~g~til~---vtHd~~~~~~~~dri~~l~~  219 (288)
T PRK13643        174 GLDPKARIEMMQLFESIHQSGQTVVL---VTHLMDDVADYADYVYLLEK  219 (288)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            999999998887543     679999   7788887765  99998864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.91  E-value=7e-24  Score=167.77  Aligned_cols=119  Identities=14%  Similarity=0.213  Sum_probs=93.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....  .......  ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        93 ~~~~~~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  168 (269)
T PRK11831         93 GALFTDMNVFDNVAYPLREH--TQLPAPL--LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD  168 (269)
T ss_pred             cccCCCCCHHHHHHHHHHHc--cCCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            35677899999998753211  0001111  3356778999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.+|++   .+||+..+..  |++++|.+
T Consensus       169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii---vsH~~~~~~~~~d~v~~l~~  219 (269)
T PRK11831        169 EPFVGQDPITMGVLVKLISELNSALGVTCVV---VSHDVPEVLSIADHAYIVAD  219 (269)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhhCEEEEEEC
Confidence            9999999999998877433      579999   5566666655  88888753

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.8e-24  Score=170.70  Aligned_cols=113  Identities=20%  Similarity=0.279  Sum_probs=91.0

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ..|+.+|+.++....   .....+  ..+++.++++.+||. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus       100 ~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~  174 (290)
T PRK13634        100 EETVEKDICFGPMNF---GVSEED--AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA  174 (290)
T ss_pred             hhhHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            579999998763211   111112  345788999999997 56799999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+++.+.      |.||++   .+||+.++..  |||++|.+
T Consensus       175 ~LD~~~~~~l~~~L~~l~~~~g~tvii---itHd~~~~~~~~drv~~l~~  221 (290)
T PRK13634        175 GLDPKGRKEMMEMFYKLHKEKGLTTVL---VTHSMEDAARYADQIVVMHK  221 (290)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999998887542      679999   6777777655  99998864

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.6e-24  Score=173.23  Aligned_cols=121  Identities=21%  Similarity=0.270  Sum_probs=100.0

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      |..++-|-+|+.+.+.-....+... ..+.+  ..+++.++|+.+||.+   ..+.+|++|||||+|||+||.||+.+|+
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~-~~~~e--a~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~  173 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKG-LSKKE--AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK  173 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcc-hhhHH--HHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC
Confidence            4566788889988887654332111 01122  5678999999999975   5689999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +||.||||++||+..+.++++.+.      |.++++   .|||+..+..  |||+++.
T Consensus       174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil---ITHDl~vva~~aDri~VMY  228 (316)
T COG0444         174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALIL---ITHDLGVVAEIADRVAVMY  228 (316)
T ss_pred             EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcceEEEEE
Confidence            999999999999999999998654      679999   9999999998  9999874

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.91  E-value=8.9e-24  Score=161.15  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           16 PKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ..+|+.+|+.++...... .......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  160 (213)
T cd03235          83 FPISVRDVVLMGLYGHKGLFRRLSKA--DKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF  160 (213)
T ss_pred             CCCcHHHHHHhccccccccccCCCHH--HHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            347999999875321100 0000011  3456888999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.     +.+|++   .+||+.++..  |+++++.+
T Consensus       161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~  207 (213)
T cd03235         161 AGVDPKTQEDIYELLRELRREGMTILV---VTHDLGLVLEYFDRVLLLNR  207 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEcC
Confidence            9999999998888543     578999   6666666654  89988864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.91  E-value=7.5e-24  Score=177.15  Aligned_cols=121  Identities=17%  Similarity=0.278  Sum_probs=96.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++...+.. .+........+++.++++.+|+.+..++++.+||||||||++|||||+++|++|||||
T Consensus        87 ~l~~~~tv~e~v~~~~~~~~~-~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE  165 (402)
T PRK09536         87 SLSFEFDVRQVVEMGRTPHRS-RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE  165 (402)
T ss_pred             CCCCCCCHHHHHHhccchhcc-cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            456789999999886422110 0110011145678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.++     +.||++   .+||+..+.+  ||+++|.+
T Consensus       166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIi---vsHdl~~~~~~adrii~l~~  214 (402)
T PRK09536        166 PTASLDINHQVRTLELVRRLVDDGKTAVA---AIHDLDLAARYCDELVLLAD  214 (402)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999998877433     679999   7788888876  89988864

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.91  E-value=8.5e-24  Score=163.87  Aligned_cols=118  Identities=19%  Similarity=0.345  Sum_probs=93.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++....   ......  ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++||||
T Consensus        84 ~~~~~~t~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  158 (236)
T TIGR03864        84 TLDLDLSVRQNLRYHAALH---GLSRAE--ARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE  158 (236)
T ss_pred             CCcccCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            4567899999998653221   111111  34567889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.+|+++||....+. . .|++++|.+
T Consensus       159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~~  207 (236)
T TIGR03864       159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLHR  207 (236)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEeC
Confidence            999999999998887432      679999776666654 2 488888753

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.91  E-value=8.2e-24  Score=160.26  Aligned_cols=118  Identities=16%  Similarity=0.235  Sum_probs=92.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++.+|+++|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus        84 ~~~~~~~~t~~e~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll  158 (206)
T TIGR03608        84 NFALIENETVEENLDLGLKYK---KLSKKE--KREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA  158 (206)
T ss_pred             chhhccCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            345677899999998753211   111112  345788899999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      ||||+|||+.++..+++.++     +.+|+++||..+.+.  ..|++++|
T Consensus       159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~i~~l  206 (206)
T TIGR03608       159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK--QADRVIEL  206 (206)
T ss_pred             eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh--hcCEEEeC
Confidence            99999999999999888554     679999666655332  23887764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=9.7e-24  Score=164.88  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=94.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhh-----HHh-----hhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317           12 DSMDPKKTPLTRMQISNGMMV-----LAA-----MFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~-----~~~-----~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      +.+++.+|+.+|+.++.....     ...     ......+..+.+.++++.+|+.+..++++.+||||||||++|||||
T Consensus        89 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al  168 (255)
T PRK11300         89 VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCM  168 (255)
T ss_pred             cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHH
Confidence            557788999999987532100     000     0000111234678899999999889999999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +.+|++|||||||+|||+.++..+++.+.      +.||++   .+|++.++..  |++++|.+
T Consensus       169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  229 (255)
T PRK11300        169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL---IEHDMKLVMGISDRIYVVNQ  229 (255)
T ss_pred             hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999999998888553      679999   6667777655  88888754

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=1e-23  Score=163.62  Aligned_cols=119  Identities=25%  Similarity=0.304  Sum_probs=93.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++... .. .....+  ..+++.++++.+|++...++++..||||||||++|||||+.+|++||||
T Consensus        86 ~~~~~~~tv~~~l~~~~~~-~~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  161 (240)
T PRK09493         86 FYLFPHLTALENVMFGPLR-VR-GASKEE--AEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD  161 (240)
T ss_pred             cccCCCCcHHHHHHhHHHH-hc-CCCHHH--HHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            3467789999999865311 00 111111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+.++..  |++++|.+
T Consensus       162 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  211 (240)
T PRK09493        162 EPTSALDPELRHEVLKVMQDLAEEGMTMVI---VTHEIGFAEKVASRLIFIDK  211 (240)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888553     679999   5556666544  88888753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.91  E-value=9.8e-24  Score=161.47  Aligned_cols=116  Identities=17%  Similarity=0.298  Sum_probs=91.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc-CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+++|+.++.....  .   ..  ..+++.++++.+ ++....++++.+||||||||++|||||+.+|++|||
T Consensus        84 ~~~~~~~t~~~~l~~~~~~~~--~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  156 (222)
T cd03224          84 RRIFPELTVEENLLLGAYARR--R---AK--RKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL  156 (222)
T ss_pred             cccCCCCcHHHHHHHHhhhcC--c---hh--HHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            346788999999987542211  0   11  334566788888 577788999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     +.||++   .+||+..+..  |+++++.+
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  207 (222)
T cd03224         157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILL---VEQNARFALEIADRAYVLER  207 (222)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhccEEEEeeC
Confidence            99999999999998888653     679999   5566665554  88888753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.91  E-value=1.2e-23  Score=162.41  Aligned_cols=118  Identities=17%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      ..+++.+|+.+|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        93 ~~~~~~~tv~enl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  167 (224)
T cd03220          93 GGFNPELTGRENIYLNGRLLG---LSRKE--IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID  167 (224)
T ss_pred             ccCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            345678999999987532110   01111  3456778999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||..++..  |++++|.+
T Consensus       168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  217 (224)
T cd03220         168 EVLAVGDAAFQEKCQRRLRELLKQGKTVIL---VSHDPSSIKRLCDRALVLEK  217 (224)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999988877543     579999   5566666544  88888754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.91  E-value=8.5e-24  Score=162.67  Aligned_cols=117  Identities=22%  Similarity=0.270  Sum_probs=91.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc--CCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM--TSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .++ .+|+++|+.++.....  ......  ..+++.++++.+|+.+..+++  +.+||||||||++|||||+.+|++|||
T Consensus        91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll  165 (227)
T cd03260          91 NPF-PGSIYDNVAYGLRLHG--IKLKEE--LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLL  165 (227)
T ss_pred             hhc-cccHHHHHHhHHHhcC--CCcHHH--HHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            345 7899999987532210  000011  345778899999998877766  599999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.    ..+|++   .+||+.++..  |++++|.+
T Consensus       166 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  215 (227)
T cd03260         166 DEPTSALDPISTAKIEELIAELKKEYTIVI---VTHNMQQAARVADRTAFLLN  215 (227)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHhhCcEEEE---EeccHHHHHHhCCEEEEEeC
Confidence            99999999999999988654    248889   6677776655  89988864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.90  E-value=8.4e-24  Score=180.47  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=94.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++.....   ....+  ..+++.++++.+|+++..++++.+|||||||||+|||||+.+|++|||||
T Consensus       120 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDE  194 (520)
T TIGR03269       120 ALYGDDTVLDNVLEALEEIG---YEGKE--AVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADE  194 (520)
T ss_pred             ccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeC
Confidence            56778999999987532111   11112  34678899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      |.||++   .+||+.++..  |++++|.+
T Consensus       195 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvii---vtHd~~~~~~~~d~i~~l~~  244 (520)
T TIGR03269       195 PTGTLDPQTAKLVHNALEEAVKASGISMVL---TSHWPEVIEDLSDKAIWLEN  244 (520)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEeC
Confidence            999999999999866332      679999   6667776655  89988854

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.90  E-value=1.3e-23  Score=160.52  Aligned_cols=118  Identities=19%  Similarity=0.261  Sum_probs=91.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....  . ....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        79 ~~~~~~~t~~en~~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  153 (213)
T TIGR01277        79 NNLFAHLTVRQNIGLGLHPGL--K-LNAE--QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD  153 (213)
T ss_pred             CccCCCCcHHHHHHhHhhccC--C-ccHH--HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            457778999999976421110  0 0011  3456788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+|+..+...  |+++++.+
T Consensus       154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~---vsh~~~~~~~~~d~v~~l~~  204 (213)
T TIGR01277       154 EPFSALDPLLREEMLALVKQLCSERQRTLLM---VTHHLSDARAIASQIAVVSQ  204 (213)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhcCeEEEEEC
Confidence            9999999999998877432      569999   4555555433  88888753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=171.28  Aligned_cols=115  Identities=23%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++ .|+++|+.++....   .....+  ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||
T Consensus       129 l~~-~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDE  202 (320)
T PRK13631        129 LFK-DTIEKDIMFGPVAL---GVKKSE--AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDE  202 (320)
T ss_pred             ccc-chHHHHHHhhHHhc---CCCHHH--HHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            454 59999998763211   111112  345788899999997 67899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     +.||++   .+||+..+..  |++++|.+
T Consensus       203 PtsgLD~~~~~~l~~~L~~l~~~g~Tiii---vtHd~~~~~~~adri~vl~~  251 (320)
T PRK13631        203 PTAGLDPKGEHEMMQLILDAKANNKTVFV---ITHTMEHVLEVADEVIVMDK  251 (320)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            999999999998888553     679999   7777776654  99998864

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.2e-23  Score=162.73  Aligned_cols=119  Identities=20%  Similarity=0.289  Sum_probs=93.0

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++.+|+.+|+.++.....  . ....  ..+++.++++.+|+....++++..||||||||++||||++.+|+++||
T Consensus        79 ~~~~~~~~tv~e~l~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  153 (232)
T PRK10771         79 ENNLFSHLTVAQNIGLGLNPGL--K-LNAA--QREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL  153 (232)
T ss_pred             ccccccCCcHHHHHhccccccc--C-CCHH--HHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3457778999999986521110  0 0011  345688899999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+.+.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  205 (232)
T PRK10771        154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLM---VSHSLEDAARIAPRSLVVAD  205 (232)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            99999999999988877432      569999   5566665544  88888753

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.90  E-value=1.9e-23  Score=162.06  Aligned_cols=123  Identities=21%  Similarity=0.314  Sum_probs=93.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhH--Hhh-hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVL--AAM-FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~--~~~-~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      +.+++.+|+.+|+.++......  ... ........+++.++++.+|+....+++++.||||||||++|||||+.+|++|
T Consensus        86 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~l  165 (242)
T TIGR03411        86 PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLL  165 (242)
T ss_pred             cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4577889999999875321100  000 0000113457888999999998889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.++    +.+|++   .+|++..+..  |++++|.+
T Consensus       166 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  217 (242)
T TIGR03411       166 LLDEPVAGMTDEETEKTAELLKSLAGKHSVVV---VEHDMEFVRSIADKVTVLHQ  217 (242)
T ss_pred             EecCCccCCCHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999999988654    569999   5555655543  88888753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=9.1e-24  Score=179.88  Aligned_cols=120  Identities=21%  Similarity=0.267  Sum_probs=95.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++.............  ..+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||||
T Consensus        92 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE  169 (506)
T PRK13549         92 ALVKELSVLENIFLGNEITPGGIMDYDA--MYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE  169 (506)
T ss_pred             ccCCCCcHHHHhhhcccccccCCcCHHH--HHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            4677899999998764221000000111  34578899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     |.+|++   .+||+..+..  |++++|.+
T Consensus       170 Pt~~LD~~~~~~l~~~l~~l~~~~~tvi~---~tH~~~~~~~~~d~v~~l~~  218 (506)
T PRK13549        170 PTASLTESETAVLLDIIRDLKAHGIACIY---ISHKLNEVKAISDTICVIRD  218 (506)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHHhcCEEEEEEC
Confidence            999999999998888543     568999   6677777765  89998864

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.90  E-value=1.5e-23  Score=171.08  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=94.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+.+.+|+.+++........  .....+  ..+++.++++.+|+.+   ..++++++|||||+||++|||||+.+|++||
T Consensus       109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~--~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli  184 (330)
T PRK09473        109 SLNPYMRVGEQLMEVLMLHK--GMSKAE--AFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI  184 (330)
T ss_pred             hcCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            57788999999876532211  111112  4467888999999974   3478999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +||||+|||+.++.++++.+.      +.+|++   .|||+..+..  |+++++.+
T Consensus       185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~---iTHdl~~~~~~~Dri~vm~~  237 (330)
T PRK09473        185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIM---ITHDLGVVAGICDKVLVMYA  237 (330)
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999999998888433      679999   8888888865  99999863

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.90  E-value=8.2e-24  Score=181.22  Aligned_cols=121  Identities=20%  Similarity=0.271  Sum_probs=103.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      .|+.++.|.+||.+++......+...  ...+  ..+++.++++.+|+.. .++++|++||||||||++|||||+.+|++
T Consensus       375 dp~~SLnPr~tV~~~i~epL~~~~~~--~~~~--~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l  450 (539)
T COG1123         375 DPYSSLNPRMTVGDILAEPLRIHGGG--SGAE--RRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL  450 (539)
T ss_pred             CcccccCccccHHHHHHhHHhhhccc--chHH--HHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE
Confidence            57888999999999998765433211  1122  4567999999999986 68999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||||+||+..+.++++.+.      |.|.+|   .+|||..+..  |||.++.
T Consensus       451 li~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf---ISHDl~vV~~i~drv~vm~  504 (539)
T COG1123         451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF---ISHDLAVVRYIADRVAVMY  504 (539)
T ss_pred             EEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEE---EeCCHHHHHhhCceEEEEE
Confidence            99999999999999999999655      679999   8999999988  9998875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.90  E-value=2.4e-23  Score=163.29  Aligned_cols=119  Identities=23%  Similarity=0.267  Sum_probs=91.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+++|+.++.... ... ....  ..+++.++++.+|+.+.. ++++.+||||||||++|||||+.+|++|||
T Consensus       101 ~~l~~~~sv~enl~~~~~~~-~~~-~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  176 (257)
T PRK10619        101 FNLWSHMTVLENVMEAPIQV-LGL-SKQE--ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF  176 (257)
T ss_pred             cccCCCCcHHHHHHHHHHHh-CCC-CHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            34677799999997643111 000 1112  345788899999998764 889999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     |.+|+++   +||...+..  ||+++|.+
T Consensus       177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv---sH~~~~~~~~~d~i~~l~~  227 (257)
T PRK10619        177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVV---THEMGFARHVSSHVIFLHQ  227 (257)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE---eCCHHHHHHhcCEEEEEEC
Confidence            99999999999998888432     6799994   555555544  88888753

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.1e-23  Score=162.64  Aligned_cols=117  Identities=24%  Similarity=0.265  Sum_probs=91.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++.....  ......  ..+++.++++.+|+.    +..++++.+||||||||++|||||+.+|++|
T Consensus        92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  166 (247)
T TIGR00972        92 NPFP-MSIYDNIAYGPRLHG--IKDKKE--LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVL  166 (247)
T ss_pred             ccCC-CCHHHHHHhHHHhcC--CCCHHH--HHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4566 999999987532210  001111  345778899999998    6788999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       167 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  218 (247)
T TIGR00972       167 LLDEPTSALDPIATGKIEELIQELKKKYTIVI---VTHNMQQAARISDRTAFFYD  218 (247)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCeEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888554    468999   6666666554  88888754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.90  E-value=1.8e-23  Score=162.20  Aligned_cols=119  Identities=23%  Similarity=0.270  Sum_probs=95.4

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++.+|+.+|+.+.....   .....+  ..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++++|
T Consensus        79 ~~~~~~~~t~~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll  153 (235)
T cd03299          79 NYALFPHMTVYKNIAYGLKKR---KVDKKE--IERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLL  153 (235)
T ss_pred             cCccCCCccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            345677899999998653211   000112  345677899999999989999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.++      +.||++   .+|++.++..  |+++++++
T Consensus       154 DEPt~gLD~~~~~~l~~~l~~~~~~~~~tili---~tH~~~~~~~~~d~i~~l~~  205 (235)
T cd03299         154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLH---VTHDFEEAWALADKVAIMLN  205 (235)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            99999999999998888543      679999   6677777654  88888753

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.2e-23  Score=167.97  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=90.7

Q ss_pred             CCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317           18 KTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP   96 (137)
Q Consensus        18 lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg   96 (137)
                      .|+.+|+.++....   .....+  ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+|
T Consensus       101 ~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~  175 (286)
T PRK13646        101 DTVEREIIFGPKNF---KMNLDE--VKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG  175 (286)
T ss_pred             hhHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            59999998763211   111112  445788999999997 678899999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           97 LHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        97 LD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+.++..+.+.+.      |.||++   .+||+.++..  ||++++++
T Consensus       176 LD~~~~~~l~~~l~~l~~~~g~tvl~---vtH~~~~~~~~~dri~~l~~  221 (286)
T PRK13646        176 LDPQSKRQVMRLLKSLQTDENKTIIL---VSHDMNEVARYADEVIVMKE  221 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            99999998877543      679999   7777777654  99988864

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.90  E-value=2.1e-23  Score=160.03  Aligned_cols=117  Identities=22%  Similarity=0.285  Sum_probs=89.4

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-HHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-ISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +++.+|+++|+.++...... .  .... .... +.++++.+++. ...++++.+||||||||++|||||+.+|++||||
T Consensus        95 ~~~~~tv~~nl~~~~~~~~~-~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  170 (228)
T cd03257          95 LNPRMTIGEQIAEPLRIHGK-L--SKKE-ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD  170 (228)
T ss_pred             cCCcCCHHHHHHHHHHhccC-C--cHHH-HHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence            55679999999865321110 0  0110 1122 35789999995 5789999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  221 (228)
T cd03257         171 EPTSALDVSVQAQILDLLKKLQEELGLTLLF---ITHDLGVVAKIADRVAVMYA  221 (228)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEeC
Confidence            9999999999998888542      679999   5666666654  89988864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.1e-23  Score=162.01  Aligned_cols=119  Identities=21%  Similarity=0.282  Sum_probs=92.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+... ... ......  ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++|||
T Consensus        91 ~~~~~~~tv~e~i~~~~~-~~~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD  166 (242)
T PRK11124         91 YNLWPHLTVQQNLIEAPC-RVL-GLSKDQ--ALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD  166 (242)
T ss_pred             ccccCCCcHHHHHHHHHH-HHc-CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            456778999999975321 100 001111  3456888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.||++   .+||..+...  |++++|.+
T Consensus       167 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~sh~~~~~~~~~d~i~~l~~  216 (242)
T PRK11124        167 EPTAALDPEITAQIVSIIRELAETGITQVI---VTHEVEVARKTASRVVYMEN  216 (242)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999998887544     679999   5555555543  88888754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=170.33  Aligned_cols=121  Identities=16%  Similarity=0.274  Sum_probs=93.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHh-hhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAA-MFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+.+.+|+.+++........... +........+++.++|+.+||.+   ..++++.+|||||||||+|||||+.+|++|
T Consensus       101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll  180 (330)
T PRK15093        101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence            35778899999975321110000 00000113457889999999974   458999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++.++++.+.      |.||++   .|||+..+..  |+++++.
T Consensus       181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~---itHdl~~v~~~~dri~vm~  233 (330)
T PRK15093        181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL---ISHDLQMLSQWADKINVLY  233 (330)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEE
Confidence            9999999999999998888544      679999   8888888876  9998875

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.6e-23  Score=166.81  Aligned_cols=117  Identities=21%  Similarity=0.194  Sum_probs=93.6

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      +++..|+.+|+.++....   .....+  ..+++.++++.+|+....++++..||||||||++|||||+.+|++||||||
T Consensus        93 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP  167 (279)
T PRK13635         93 QFVGATVQDDVAFGLENI---GVPREE--MVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA  167 (279)
T ss_pred             hcccccHHHHHhhhHhhC---CCCHHH--HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            566789999998753221   111112  345788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.++      +.||+++||..+.+..  .|++++|.+
T Consensus       168 t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~--~d~i~~l~~  215 (279)
T PRK13635        168 TSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ--ADRVIVMNK  215 (279)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc--CCEEEEEEC
Confidence            99999999999988554      6799996666555531  489888764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.90  E-value=3.3e-23  Score=159.62  Aligned_cols=124  Identities=20%  Similarity=0.256  Sum_probs=91.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHH-HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISE-ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+.+|+.++.............  ...++.+ +++.+++....++.+..|||||+||++|||||+.+|++|||
T Consensus        90 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illl  167 (226)
T cd03234          90 DILLPGLTVRETLTYTAILRLPRKSSDAI--RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL  167 (226)
T ss_pred             CccCcCCcHHHHHHHHHHhhcccccchHH--HHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEE
Confidence            45678899999998754221111000011  2234555 89999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     +.||+++||..++.-....|+++++.+
T Consensus       168 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~  219 (226)
T cd03234         168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS  219 (226)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence            99999999999998888553     579999555443222233488888753

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.90  E-value=2.5e-23  Score=164.35  Aligned_cols=112  Identities=21%  Similarity=0.321  Sum_probs=91.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.  .  .     .  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        90 ~~l~~~~tv~enl~~~~--~--~-----~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD  158 (257)
T PRK11247         90 ARLLPWKKVIDNVGLGL--K--G-----Q--WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD  158 (257)
T ss_pred             ccCCCCCcHHHHHHhcc--c--c-----h--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34677799999998642  1  0     1  2346778999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tvii---vsHd~~~~~~~~d~i~~l~~  209 (257)
T PRK11247        159 EPLGALDALTRIEMQDLIESLWQQHGFTVLL---VTHDVSEAVAMADRVLLIEE  209 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998877542      679999   5566665443  88888753

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=2.6e-23  Score=158.16  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=93.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++...+   .   ..  ..+++.++++.+|+.+..++++..||||||||++|||||+++|+++|||
T Consensus        83 ~~~~~~~tv~e~l~~~~~~~---~---~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  154 (204)
T PRK13538         83 PGIKTELTALENLRFYQRLH---G---PG--DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD  154 (204)
T ss_pred             cccCcCCcHHHHHHHHHHhc---C---cc--HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            45677899999998753211   1   12  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      |||+|||+.++..+++.+.     +.||+++||....+.+ -.+|+|.+
T Consensus       155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~~~~~  202 (204)
T PRK13538        155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS-DKVRKLRL  202 (204)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc-CCceEEec
Confidence            9999999999998888543     6799997777777665 33677765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.90  E-value=2.1e-23  Score=162.12  Aligned_cols=118  Identities=21%  Similarity=0.194  Sum_probs=93.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+......   ....+  ..+++.++++.+|+.+..++++..||||||||++||+||+.+|++||||
T Consensus       104 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  178 (236)
T cd03267         104 TQLWWDLPVIDSFYLLAAIYD---LPPAR--FKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD  178 (236)
T ss_pred             cccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            356778999999986532211   11111  3456778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.+|++   .+||..++..  |++++|.+
T Consensus       179 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  229 (236)
T cd03267         179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLL---TSHYMKDIEALARRVLVIDK  229 (236)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence            9999999999998888543      569999   5666665544  88888753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.90  E-value=2.6e-23  Score=159.72  Aligned_cols=115  Identities=22%  Similarity=0.323  Sum_probs=93.0

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ++.+++.+|+++|+.++....       ..  ...++.++++.+|+.+..++++.+|||||+||++||||++.+|++|||
T Consensus        78 ~~~~~~~~t~~~~~~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll  148 (223)
T TIGR03740        78 SPPLYENLTARENLKVHTTLL-------GL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL  148 (223)
T ss_pred             CCCccccCCHHHHHHHHHHHc-------CC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            345677899999997653211       11  134677899999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     +.+|++   .+||..++..  |++++|++
T Consensus       149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  199 (223)
T TIGR03740       149 DEPTNGLDPIGIQELRELIRSFPEQGITVIL---SSHILSEVQQLADHIGIISE  199 (223)
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHHhcCEEEEEeC
Confidence            99999999999998888543     568999   6666666654  88888753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.1e-23  Score=165.75  Aligned_cols=116  Identities=19%  Similarity=0.215  Sum_probs=91.5

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +...|+.+|+.++....   .....+  ..+++.++++.+|+....++++..||||||||++|||||+.+|++|||||||
T Consensus        90 ~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  164 (274)
T PRK13644         90 FVGRTVEEDLAFGPENL---CLPPIE--IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT  164 (274)
T ss_pred             cccchHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            55689999998653211   011112  3456888999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||+.++..+++.+.     |.||+++||..+.+.  ..|++++|.+
T Consensus       165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~--~~d~v~~l~~  210 (274)
T PRK13644        165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH--DADRIIVMDR  210 (274)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh--hCCEEEEEEC
Confidence            9999999998888553     679999666555542  1489888753

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.1e-23  Score=166.37  Aligned_cols=115  Identities=21%  Similarity=0.227  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +...|+++|+.++....   ..+...  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||||
T Consensus        95 ~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt  169 (283)
T PRK13636         95 LFSASVYQDVSFGAVNL---KLPEDE--VRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT  169 (283)
T ss_pred             hccccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            34579999998753211   111112  3457888999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.      |.||++   .+||+..+..  ||+++|++
T Consensus       170 ~gLD~~~~~~l~~~l~~l~~~~g~till---vsH~~~~~~~~~dri~~l~~  217 (283)
T PRK13636        170 AGLDPMGVSEIMKLLVEMQKELGLTIII---ATHDIDIVPLYCDNVFVMKE  217 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999998777432      679999   6777777664  99998864

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=182.29  Aligned_cols=118  Identities=20%  Similarity=0.264  Sum_probs=95.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+++.+||.+|+.++...+.  .....+  ..+++.++++.+||.+   ..++++.+|||||||||+|||||+.+|++||
T Consensus       116 ~l~~~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLl  191 (623)
T PRK10261        116 SLNPVFTVGEQIAESIRLHQ--GASREE--AMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI  191 (623)
T ss_pred             hcCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence            46778999999987642210  111112  4567889999999963   5789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+..+.++++.+.      |.+|++   .|||+.++..  |||++|.+
T Consensus       192 lDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~---itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        192 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF---ITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             EeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEeeC
Confidence            999999999999888777432      679999   7888888766  99999864

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.9e-23  Score=162.28  Aligned_cols=119  Identities=28%  Similarity=0.381  Sum_probs=93.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++..|+.+|+.++.... . ......  ...++.++++.+|+.+..++.+.+|||||+||++|||||+.+|++||||
T Consensus        96 ~~~~~~~tv~~nl~~~~~~~-~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  171 (252)
T TIGR03005        96 FNLFPHKTVLDNVTEAPVLV-L-GMARAE--AEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD  171 (252)
T ss_pred             cccCCCCcHHHHHHHHHHHh-c-CCCHHH--HHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            35677899999998752110 0 001111  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.+|++   .+||+.++..  |++++|.+
T Consensus       172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  222 (252)
T TIGR03005       172 EVTSALDPELVGEVLNVIRRLASEHDLTMLL---VTHEMGFAREFADRVCFFDK  222 (252)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999998877443      679999   6666766644  89888864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.3e-23  Score=158.74  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=98.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.++|+||..||+.++..+..-   ...+  ....+.++|+.+|+....+.+|++||||+||||+||||++..|++||.|
T Consensus        97 F~Lip~ltAlENV~lPleL~ge---~~~~--~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD  171 (228)
T COG4181          97 FHLIPNLTALENVALPLELRGE---SSAD--SRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD  171 (228)
T ss_pred             eeccccchhhhhccchhhhcCC---cccc--HHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc
Confidence            4578999999999988654321   1122  3456889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEe
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      |||.+||..+-.++.+.+.      |.|..+   +|||-+.|.| +|.+-+
T Consensus       172 EPTGNLD~~Tg~~iaDLlF~lnre~G~TlVl---VTHD~~LA~Rc~R~~r~  219 (228)
T COG4181         172 EPTGNLDRATGDKIADLLFALNRERGTTLVL---VTHDPQLAARCDRQLRL  219 (228)
T ss_pred             CCCCCcchhHHHHHHHHHHHHhhhcCceEEE---EeCCHHHHHhhhheeee
Confidence            9999999999998887543      778889   8999999999 776654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.7e-23  Score=161.36  Aligned_cols=119  Identities=22%  Similarity=0.228  Sum_probs=92.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++.+|+.+|+.++...... .....+  ..+++.++++.+|+.+    ..++++.+||||||||++|||||+.+|++|
T Consensus        92 ~~~~~~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  168 (250)
T PRK14247         92 NPIPNLSIFENVALGLKLNRL-VKSKKE--LQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL  168 (250)
T ss_pred             ccCCCCcHHHHHHHHHHhccc-cCCHHH--HHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            367789999999875321110 000111  3456788999999853    568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++++|++
T Consensus       169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  220 (250)
T PRK14247        169 LADEPTANLDPENTAKIESLFLELKKDMTIVL---VTHFPQQAARISDYVAFLYK  220 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999999998888554    568999   6666666544  88888753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=2e-23  Score=156.87  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ...|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus        82 ~~~tv~~nl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  156 (190)
T TIGR01166        82 FAADVDQDVAFGPLNL---GLSEAE--VERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA  156 (190)
T ss_pred             ccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            3579999998753211   001111  34567889999999988999999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317           96 PLHKAEFTPKYERKV-----DTKVDYTGNR  120 (137)
Q Consensus        96 gLD~~~~~~i~~~~~-----~~~v~~~~~~  120 (137)
                      |||+.++..+++.+.     +.+|+++||.
T Consensus       157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~  186 (190)
T TIGR01166       157 GLDPAGREQMLAILRRLRAEGMTVVISTHD  186 (190)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence            999999998888544     6799994443

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.7e-23  Score=161.33  Aligned_cols=119  Identities=17%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++.....  ......  ...++.++++.+|+.+..++++..||||||||++|||||+.+|++||||
T Consensus        87 ~~~~~~~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (241)
T PRK10895         87 ASIFRRLSVYDNLMAVLQIRD--DLSAEQ--REDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD  162 (241)
T ss_pred             CcccccCcHHHHHhhhhhccc--ccCHHH--HHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            346777999999986532110  001111  3457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+.+.+.     +.+|++   .+|++..+..  |++++|.+
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii---~sH~~~~~~~~~d~v~~l~~  212 (241)
T PRK10895        163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLI---TDHNVRETLAVCERAYIVSQ  212 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhcCEEEEEeC
Confidence            9999999999987776432     679999   5566655544  88888753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=177.68  Aligned_cols=120  Identities=18%  Similarity=0.251  Sum_probs=94.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+++|+.++...... .......  ..+++.++++.+|+.+..++++++||||||||++|||||+.+|++||||
T Consensus        89 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  166 (501)
T PRK10762         89 NLIPQLTIAENIFLGREFVNRFGRIDWKK--MYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD  166 (501)
T ss_pred             hccCCCcHHHHhhhccccccccCccCHHH--HHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            567889999999876321100 0000011  3456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     +.+|++   .+||+.++..  |++++|.+
T Consensus       167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii---~sHd~~~~~~~~d~i~~l~~  216 (501)
T PRK10762        167 EPTDALTDTETESLFRVIRELKSQGRGIVY---ISHRLKEIFEICDDVTVFRD  216 (501)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            9999999999998876443     569999   6677776655  89998864

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1.8e-23  Score=157.14  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +..++|.+||.+|+.-.. .+.. +.++.+  ...++.++|+++.+.+++|+.|-.|||||+|||+||||||.+|++|++
T Consensus        90 qy~lwphltv~enlieap-~kv~-gl~~~q--a~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf  165 (242)
T COG4161          90 QYNLWPHLTVQENLIEAP-CRVL-GLSKDQ--ALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF  165 (242)
T ss_pred             hhccCchhHHHHHHHhhh-HHHh-CCCHHH--HHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence            456899999999987543 1211 223333  567889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEE
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCL  134 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~  134 (137)
                      ||||++|||.-..++....+     |+|-.+   .||.+..|..  .+|..
T Consensus       166 deptaaldpeitaqvv~iikel~~tgitqvi---vthev~va~k~as~vvy  213 (242)
T COG4161         166 DEPTAALDPEITAQIVSIIKELAETGITQVI---VTHEVEVARKTASRVVY  213 (242)
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhcCceEEE---EEeehhHHHhhhhheEe
Confidence            99999999999888777544     455556   7899998877  55543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.9e-23  Score=162.36  Aligned_cols=116  Identities=24%  Similarity=0.285  Sum_probs=90.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ +|+++|+.++....   ......  ..+++.++++.+|+.    ...++++..||||||||++|||||+.+|++|
T Consensus       103 ~~~~-~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  176 (258)
T PRK14268        103 NPFP-MSIYDNVAYGPRIH---GANKKD--LDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKII  176 (258)
T ss_pred             ccCc-ccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            3555 89999998753211   111111  345678899999984    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.+
T Consensus       177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiii---vsH~~~~~~~~~d~i~~l~~  228 (258)
T PRK14268        177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVI---VTHNMQQAARISDYTGFFLM  228 (258)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888554    578999   6667776655  99988753

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.5e-23  Score=164.35  Aligned_cols=115  Identities=23%  Similarity=0.263  Sum_probs=91.9

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +...|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|++|||||||
T Consensus        91 ~~~~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  165 (275)
T PRK13639         91 LFAPTVEEDVAFGPLNL---GLSKEE--VEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT  165 (275)
T ss_pred             hccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            34579999998653211   111112  3456888999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.     +.||++   .+||+..+..  |+++++++
T Consensus       166 ~gLD~~~~~~l~~~l~~l~~~~~til~---vtH~~~~~~~~~d~i~~l~~  212 (275)
T PRK13639        166 SGLDPMGASQIMKLLYDLNKEGITIII---STHDVDLVPVYADKVYVMSD  212 (275)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999998888543     679999   6666666654  89988864

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.6e-23  Score=164.43  Aligned_cols=115  Identities=22%  Similarity=0.287  Sum_probs=91.9

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      +...|+.+|+.++....   ......  ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||||
T Consensus        91 ~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt  165 (277)
T PRK13652         91 IFSPTVEQDIAFGPINL---GLDEET--VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT  165 (277)
T ss_pred             cccccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            34689999998653211   111111  3456789999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.      +.||++   .+||+..+..  |++++|.+
T Consensus       166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli---~tH~~~~~~~~~drv~~l~~  213 (277)
T PRK13652        166 AGLDPQGVKELIDFLNDLPETYGMTVIF---STHQLDLVPEMADYIYVMDK  213 (277)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999888543      679999   6667766644  88888753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.2e-23  Score=180.92  Aligned_cols=118  Identities=21%  Similarity=0.283  Sum_probs=96.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+.++.....  .....+  ..+++.++|+.+||. ...++++++|||||||||+|||||+.+|++||||
T Consensus       413 ~l~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD  488 (623)
T PRK10261        413 SLDPRQTVGDSIMEPLRVHG--LLPGKA--AAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD  488 (623)
T ss_pred             hcCCCCCHHHHHHHHHHHcC--CCCHHH--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            47888999999986532211  000112  346788999999996 5789999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.      |.+|++   .+||+.++..  |+|++|.+
T Consensus       489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~---isHdl~~v~~~~dri~vl~~  539 (623)
T PRK10261        489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLF---ISHDMAVVERISHRVAVMYL  539 (623)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999988652      679999   7888888876  99998864

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.2e-23  Score=160.54  Aligned_cols=116  Identities=16%  Similarity=0.254  Sum_probs=90.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc-CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+.+|+.++....  ..   ..  ..+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        89 ~~~~~~~tv~~~l~~~~~~~--~~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl  161 (237)
T PRK11614         89 RRVFSRMTVEENLAMGGFFA--ER---DQ--FQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL  161 (237)
T ss_pred             cccCCCCcHHHHHHHhhhcc--Ch---hH--HHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            34677799999998753111  10   11  234566778888 577778889999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     +.||++   .+||+.++..  |++++|.+
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  212 (237)
T PRK11614        162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFL---VEQNANQALKLADRGYVLEN  212 (237)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHhhCCEEEEEeC
Confidence            99999999999998877543     679999   5667766655  89988853

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.3e-23  Score=164.11  Aligned_cols=117  Identities=22%  Similarity=0.227  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++.+|+++|+.++....   .+...+  ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        95 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP  169 (271)
T PRK13632         95 QFIGATVEDDIAFGLENK---KVPPKK--MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES  169 (271)
T ss_pred             hcCcccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            466789999998753211   111111  345678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      +.+|+++||..+.+.  ..|++++|.+
T Consensus       170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~v~~l~~  217 (271)
T PRK13632        170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSE  217 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh--hCCEEEEEEC
Confidence            99999999998888553      369999777666553  2488888864

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.90  E-value=2.3e-23  Score=178.48  Aligned_cols=121  Identities=21%  Similarity=0.280  Sum_probs=101.0

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC--ccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT--TMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~--~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      .|+.++-|-+|+.+.+.-....+...  ...+  ..+++.++|+.+||.+...  ++|++||||||||+.||+||+.+|+
T Consensus        99 ~p~~slnP~~tIg~Qi~E~~~~h~~~--~~~e--a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~  174 (539)
T COG1123          99 DPMTSLNPVMTIGDQIREALRLHGKG--SRAE--ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK  174 (539)
T ss_pred             CchhhcCchhhHHHHHHHHHHHhccc--cHHH--HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCC
Confidence            46667778899988887654443211  1223  6678999999999987654  4999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +||+||||++||+..+.+|++.++      |.++++   .|||+..+..  |||+++.
T Consensus       175 LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~---ITHDl~Vva~~aDrv~Vm~  229 (539)
T COG1123         175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLF---ITHDLGVVAELADRVVVMY  229 (539)
T ss_pred             EEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEE---EcCCHHHHHHhcCeEEEEE
Confidence            999999999999999999999665      669999   8999999988  9999874

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.90  E-value=3.7e-23  Score=162.63  Aligned_cols=121  Identities=17%  Similarity=0.234  Sum_probs=94.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhh---HH--hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           12 DSMDPKKTPLTRMQISNGMMV---LA--AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~---~~--~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      +.+++.+|+++|+.++.....   ..  ......  ...++.++++.+|+.+..++++..||||||||++|||||+.+|+
T Consensus        95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  172 (262)
T PRK09984         95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE--QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK  172 (262)
T ss_pred             cccccCCcHHHHHHhhhcccccchhhhcccccHH--HHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence            356778999999986531000   00  000111  34578899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||||||+|||+.++..+.+.+.      |.+|++   .+||+.++..  |++++|.+
T Consensus       173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii---~tH~~~~~~~~~d~i~~l~~  228 (262)
T PRK09984        173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVV---TLHQVDYALRYCERIVALRQ  228 (262)
T ss_pred             EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999999998887543      679999   6777776655  88888753

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2e-23  Score=162.60  Aligned_cols=116  Identities=18%  Similarity=0.275  Sum_probs=95.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ..+|+.+||.||+.++.......    ..  .....+++.+.|- |.+..+++.++|||||||.++||||||.+|++|+|
T Consensus        87 R~iF~~LTVeENL~~g~~~~~~~----~~--~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL  160 (237)
T COG0410          87 RRIFPRLTVEENLLLGAYARRDK----EA--QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL  160 (237)
T ss_pred             ccchhhCcHHHHHhhhhhccccc----cc--ccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence            45899999999999875322110    11  1222677888884 77889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||.||-|.-.++|++.+.      +.||++   ..||..+|..  ||+|++.
T Consensus       161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL---VEQn~~~Al~iaDr~yvle  211 (237)
T COG0410         161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILL---VEQNARFALEIADRGYVLE  211 (237)
T ss_pred             cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE---EeccHHHHHHhhCEEEEEe
Confidence            99999999999999988544      448998   9999999998  9999974

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.8e-23  Score=164.79  Aligned_cols=117  Identities=22%  Similarity=0.216  Sum_probs=92.6

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++..|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++..|||||+||++|||||+.+|++||||||
T Consensus        96 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEP  170 (282)
T PRK13640         96 QFVGATVGDDVAFGLENR---AVPRPE--MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDES  170 (282)
T ss_pred             hhccCCHHHHHHhhHHhC---CCCHHH--HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            466789999998653111   111112  345788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      |.+|+++||..+.+.  ..|++++|.+
T Consensus       171 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~--~~d~i~~l~~  218 (282)
T PRK13640        171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN--MADQVLVLDD  218 (282)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence            99999999998887543      679999666655542  2499998864

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=6.3e-23  Score=160.76  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++..... ..+.........++.++++.+|+....++++..|||||+||++|||||+.+|++|||||
T Consensus        86 ~~~~~~tv~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  164 (255)
T PRK11231         86 LTPEGITVRELVAYGRSPWL-SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE  164 (255)
T ss_pred             CCCCCccHHHHHHhccchhh-hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            45667899999987521110 00000011134567889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     +.||++   .+||+..+..  |++++|.+
T Consensus       165 P~~~LD~~~~~~l~~~l~~l~~~~~tiii---~tH~~~~~~~~~d~i~~l~~  213 (255)
T PRK11231        165 PTTYLDINHQVELMRLMRELNTQGKTVVT---VLHDLNQASRYCDHLVVLAN  213 (255)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEE---EECCHHHHHHhcCEEEEEEC
Confidence            999999999998888543     679999   6777777665  88888864

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.89  E-value=4.8e-23  Score=159.24  Aligned_cols=116  Identities=27%  Similarity=0.342  Sum_probs=89.8

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC---cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ---EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~---~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +++.+|+.+|+.+......  . ....  ..+++.++++.+|+.   ...++++.+||||||||++|||||+.+|++|||
T Consensus        75 ~~~~~t~~~~~~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL  149 (230)
T TIGR02770        75 FNPLFTMGNHAIETLRSLG--K-LSKQ--ARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA  149 (230)
T ss_pred             cCcccCHHHHHHHHHHHcC--c-cHHH--HHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4456899999875432110  0 0111  345688899999998   567899999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      +.||++   .+|++.++..  |++++|.+
T Consensus       150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  201 (230)
T TIGR02770       150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILL---ITHDLGVVARIADEVAVMDD  201 (230)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999988777433      568999   5666666544  89988863

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.89  E-value=3.9e-23  Score=176.86  Aligned_cols=119  Identities=20%  Similarity=0.347  Sum_probs=95.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+.++...... .....+  ..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|++||||
T Consensus       374 ~l~~~~tv~e~l~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD  450 (529)
T PRK15134        374 SLNPRLNVLQIIEEGLRVHQP-TLSAAQ--REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD  450 (529)
T ss_pred             hcCCcccHHHHHHHHHHhccc-cCChHH--HHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence            367789999999875321100 001111  345788999999997 5789999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .+||+.++..  |++++|.+
T Consensus       451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---vsHd~~~~~~~~d~i~~l~~  501 (529)
T PRK15134        451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLF---ISHDLHVVRALCHQVIVLRQ  501 (529)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhhCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence            9999999999998888653      679999   7788887776  99998864

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.89  E-value=5.8e-23  Score=162.07  Aligned_cols=117  Identities=24%  Similarity=0.327  Sum_probs=91.6

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++.+|+.+|+.+.....  .......  ..+++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||
T Consensus       101 ~~~~~tv~~~l~~~~~~~--~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE  176 (265)
T TIGR02769       101 VNPRMTVRQIIGEPLRHL--TSLDESE--QKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE  176 (265)
T ss_pred             cCCCCCHHHHHHHHHHHh--cCCCHHH--HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            556799999997643111  0111111  345788899999996 67899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.||++   .+||+..+..  |++++|.+
T Consensus       177 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii---vsH~~~~~~~~~d~i~~l~~  226 (265)
T TIGR02769       177 AVSNLDMVLQAVILELLRKLQQAFGTAYLF---ITHDLRLVQSFCQRVAVMDK  226 (265)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHHhcEEEEEeC
Confidence            999999999887777442      679999   6677777654  88888753

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.3e-23  Score=176.25  Aligned_cols=120  Identities=21%  Similarity=0.252  Sum_probs=95.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++............+  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||
T Consensus        89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE  166 (501)
T PRK11288         89 HLVPEMTVAENLYLGQLPHKGGIVNRRL--LNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE  166 (501)
T ss_pred             hccCCCCHHHHHHhcccccccCCCCHHH--HHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            4677899999998753211000000111  34578889999999888899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii---itHd~~~~~~~~d~i~~l~~  215 (501)
T PRK11288        167 PTSSLSAREIEQLFRVIRELRAEGRVILY---VSHRMEEIFALCDAITVFKD  215 (501)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999887554     679999   7777777765  89988863

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.7e-23  Score=176.17  Aligned_cols=122  Identities=22%  Similarity=0.245  Sum_probs=95.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhh-HHhhh-hcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMV-LAAMF-NQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~-~~~~~-~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+++.+|+++|+.++..... ..... .......+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||
T Consensus        90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllL  169 (510)
T PRK09700         90 SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIM  169 (510)
T ss_pred             cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            46778999999986532100 00000 00111345788899999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       170 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiii---vsHd~~~~~~~~d~v~~l~~  220 (510)
T PRK09700        170 DEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY---ISHKLAEIRRICDRYTVMKD  220 (510)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999887543     679999   6777777765  89988853

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.89  E-value=5.8e-23  Score=161.64  Aligned_cols=117  Identities=20%  Similarity=0.235  Sum_probs=92.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh------cCCC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV------NNPP   86 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~------~~P~   86 (137)
                      .+++.+|+++|+.++.....   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+      .+|+
T Consensus        86 ~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         86 SLSFPFTVEEVVAMGRAPHG---LSRAE--DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             cCCCCCCHHHHHHhhhcccC---CCcHH--HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            45577899999987532110   00111  3456788999999998889999999999999999999999      5999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||||||+|||+.++..+.+.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  216 (258)
T PRK13548        161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV---VLHDLNLAARYADRIVLLHQ  216 (258)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhcCEEEEEEC
Confidence            999999999999999987777432      679999   6677777654  89988753

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=5.3e-23  Score=163.29  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=88.9

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ..|+++|+.++....   .....+  ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus       100 ~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  174 (280)
T PRK13649        100 EETVLKDVAFGPQNF---GVSQEE--AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA  174 (280)
T ss_pred             cccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            479999998653211   011112  345678899999997 46799999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+++.+.     +.||++   .+||+.++..  |++++|.+
T Consensus       175 ~LD~~~~~~l~~~l~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  220 (280)
T PRK13649        175 GLDPKGRKELMTLFKKLHQSGMTIVL---VTHLMDDVANYADFVYVLEK  220 (280)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEE---EeccHHHHHHhCCEEEEEEC
Confidence            999999998888543     679999   5666666644  88888753

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.9e-23  Score=162.99  Aligned_cols=114  Identities=21%  Similarity=0.187  Sum_probs=89.3

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ...|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus        91 ~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~  165 (271)
T PRK13638         91 FYTDIDSDIAFSLRNL---GVPEAE--ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTA  165 (271)
T ss_pred             ccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            3457888887642111   111111  34567889999999988899999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+++.+.     +.||++   .+||+.++..  |++++|.+
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~g~tii~---vtH~~~~~~~~~d~i~~l~~  211 (271)
T PRK13638        166 GLDPAGRTQMIAIIRRIVAQGNHVII---SSHDIDLIYEISDAVYVLRQ  211 (271)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999998887543     568999   5666666654  88888753

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=6.1e-23  Score=160.36  Aligned_cols=120  Identities=24%  Similarity=0.237  Sum_probs=91.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      +.+++.+|+.+|+.++...... ......  ..+++.++++.+|+.    ...++++.+||||||||++|||||+.+|++
T Consensus        94 ~~~~~~~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  170 (253)
T PRK14267         94 PNPFPHLTIYDNVAIGVKLNGL-VKSKKE--LDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI  170 (253)
T ss_pred             CccCCCCcHHHHHHHHHHhcCc-cCCHHH--HHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            4567789999999875321110 000111  335677889999984    356889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  223 (253)
T PRK14267        171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVL---VTHSPAQAARVSDYVAFLYL  223 (253)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEE---EECCHHHHHhhCCEEEEEEC
Confidence            99999999999999998888554    468999   6666666554  89988853

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.8e-23  Score=175.46  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=94.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHH-h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLA-A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~-~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+++++|+.+|+.++....... . .....  ..+++.++++.+|+. ...++++++||||||||++|||||+.+|++||
T Consensus       351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lll  428 (506)
T PRK13549        351 GIVPVMGVGKNITLAALDRFTGGSRIDDAA--ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILI  428 (506)
T ss_pred             CCcCCCCHHHHhhhhhhhhhccCcccChHH--HHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEE
Confidence            3677899999998753111100 0 00111  345688999999996 57899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~---~sHd~~~~~~~~d~v~~l~~  480 (506)
T PRK13549        429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV---ISSELPEVLGLSDRVLVMHE  480 (506)
T ss_pred             EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            999999999999998877533     679999   7778887766  99998864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.89  E-value=5.5e-23  Score=175.47  Aligned_cols=113  Identities=18%  Similarity=0.264  Sum_probs=94.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++...  .     ..  ..+++.++++.+|+....++++++||||||||++|||||+.+|++|||||
T Consensus        96 ~~~~~~tv~e~l~~~~~~--~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE  166 (510)
T PRK15439         96 LLFPNLSVKENILFGLPK--R-----QA--SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE  166 (510)
T ss_pred             ccCCCCcHHHHhhccccc--c-----hH--HHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            467889999999875311  0     11  34567889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii---vtHd~~~~~~~~d~i~~l~~  215 (510)
T PRK15439        167 PTASLTPAETERLFSRIRELLAQGVGIVF---ISHKLPEIRQLADRISVMRD  215 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999988654     679999   7777777765  99998863

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.2e-23  Score=175.12  Aligned_cols=120  Identities=18%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++.............  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE  160 (491)
T PRK10982         83 NLVLQRSVMDNMWLGRYPTKGMFVDQDK--MYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE  160 (491)
T ss_pred             ccccCCCHHHHhhcccccccccccCHHH--HHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            4677899999998753110000000111  34578889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii---~tH~~~~~~~~~d~i~~l~~  209 (491)
T PRK10982        161 PTSSLTEKEVNHLFTIIRKLKERGCGIVY---ISHKMEEIFQLCDEITILRD  209 (491)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            999999999999977653     679999   6677777665  99998864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.6e-23  Score=175.57  Aligned_cols=120  Identities=18%  Similarity=0.263  Sum_probs=95.1

Q ss_pred             CCCCCCCHHHHHHhhhhhh---hHH--h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317           13 SMDPKKTPLTRMQISNGMM---VLA--A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNP   85 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~---~~~--~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P   85 (137)
                      .+++++|+++|+.++...+   ...  . .....  ..+++.++++.+|+. +..++++++|||||||||.|||||+.+|
T Consensus       351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p  428 (510)
T PRK09700        351 GFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD--EQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCP  428 (510)
T ss_pred             CCcCCCcHHHHhccccccccccccccccccChHH--HHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCC
Confidence            4778899999998753211   000  0 00011  234678899999997 7789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++|||||||+|||+.++..+++.+.     |.||++   .+||+..+..  |++++|.+
T Consensus       429 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~---vsHd~~~~~~~~d~i~~l~~  484 (510)
T PRK09700        429 EVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM---VSSELPEIITVCDRIAVFCE  484 (510)
T ss_pred             CEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHhhCCEEEEEEC
Confidence            9999999999999999998888654     679999   6777777766  99998864

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.89  E-value=9.1e-23  Score=157.90  Aligned_cols=118  Identities=20%  Similarity=0.294  Sum_probs=92.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+......   .....  ..+++.++++.+|+.+..++.+..||+||+||++|||||+.+|+++|||
T Consensus        81 ~~~~~~~t~~~nl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (232)
T cd03300          81 YALFPHLTVFENIAFGLRLKK---LPKAE--IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD  155 (232)
T ss_pred             cccCCCCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            446678899999986532211   00111  3456778999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.||++   .+|+..++..  |++++|.+
T Consensus       156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii---~sh~~~~~~~~~d~i~~l~~  206 (232)
T cd03300         156 EPLGALDLKLRKDMQLELKRLQKELGITFVF---VTHDQEEALTMSDRIAVMNK  206 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            9999999999999987542      679999   5555555443  88888753

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8.3e-23  Score=159.85  Aligned_cols=117  Identities=22%  Similarity=0.252  Sum_probs=90.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC----CcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL----QEHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL----~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .++ .+|+++|+.++....  .......  ..+++.++++.+++    .+..++++.+||||||||++|||||+.+|++|
T Consensus        98 ~~~-~~tv~eni~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  172 (254)
T PRK14273         98 NPF-LMSIYDNISYGPKIH--GTKDKKK--LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVI  172 (254)
T ss_pred             ccc-cCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            344 489999998764221  0000111  34567888999987    34578899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++.++..  |++++|.+
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---~sH~~~~~~~~~d~i~~l~~  224 (254)
T PRK14273        173 LMDEPTSALDPISTGKIEELIINLKESYTIII---VTHNMQQAGRISDRTAFFLN  224 (254)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888654    568999   6666666654  88888753

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=9.7e-23  Score=159.23  Aligned_cols=117  Identities=22%  Similarity=0.200  Sum_probs=90.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++.....  ......  ..+++.++++.+|+.+    ..++++.+||||||||++|||||+.+|++|
T Consensus        97 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  171 (253)
T PRK14242         97 NPFP-KSIFENVAYGLRVNG--VKDKAY--LAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVL  171 (253)
T ss_pred             CCCc-CcHHHHHHHHHHHcC--CCCHHH--HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3555 599999987632110  000011  3456788899999853    468889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.+
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---~tH~~~~~~~~~d~v~~l~~  223 (253)
T PRK14242        172 LMDEPASALDPIATQKIEELIHELKARYTIII---VTHNMQQAARVSDVTAFFYM  223 (253)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE---EEecHHHHHHhCCEEEEEEC
Confidence            9999999999999998888654    568999   6677777655  89988853

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7.3e-23  Score=162.70  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=92.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++..|+.+|+.++....   ......  ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++||||||
T Consensus        93 ~~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP  167 (277)
T PRK13642         93 QFVGATVEDDVAFGMENQ---GIPREE--MIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES  167 (277)
T ss_pred             hhccCCHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            466789999998653211   111111  345778899999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      |.||+++||....+.  ..|++++|.+
T Consensus       168 t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~~l~~  215 (277)
T PRK13642        168 TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRILVMKA  215 (277)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence            99999999999988643      679999555555443  1389988864

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7e-23  Score=163.03  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP   96 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg   96 (137)
                      ..|+.+|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus       100 ~~~v~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~g  174 (280)
T PRK13633        100 ATIVEEDVAFGPENL---GIPPEE--IRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM  174 (280)
T ss_pred             cccHHHHHHhhHhhc---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            468999998763211   111112  345788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           97 LHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        97 LD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+.++..+++.+.      +.||+++||..+.+..  .|++++|++
T Consensus       175 LD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~--~d~v~~l~~  219 (280)
T PRK13633        175 LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE--ADRIIVMDS  219 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc--CCEEEEEEC
Confidence            99999998887543      6799995555554432  389988864

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.89  E-value=7e-23  Score=157.85  Aligned_cols=115  Identities=20%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+.+|+.++....   .   ..  ..+.+.++++.++ +....++++.+||||||||++|||||+.+|++|||
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~---~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl  155 (230)
T TIGR03410        84 REIFPRLTVEENLLTGLAAL---P---RR--SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL  155 (230)
T ss_pred             CcccCCCcHHHHHHHHHHhc---C---cc--hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            34677889999998653211   1   11  2234567788887 57778999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      +.||++   .+||+.++..  |++++|.+
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~  207 (230)
T TIGR03410       156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL---VEQYLDFARELADRYYVMER  207 (230)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998888543      579999   5666666654  88888753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.89  E-value=1.6e-22  Score=156.62  Aligned_cols=123  Identities=19%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHH-h---hhhcchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLA-A---MFNQSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNP   85 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~-~---~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P   85 (137)
                      +.+++.+|+.+|+.+........ .   ....+  ..+++.++++.+|+. ...++++. .||||||||++|||||+.+|
T Consensus        86 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p  163 (243)
T TIGR01978        86 PEEIPGVSNLEFLRSALNARRSARGEEPLDLLD--FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP  163 (243)
T ss_pred             ccccCCcCHHHHHHHHHHHhhcccccccccHHH--HHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCC
Confidence            35678899999998653211100 0   00011  345688899999997 46788887 59999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ++|||||||+|||+.++..+++.+.     +.||+++||..+.+.....|+++++.
T Consensus       164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~  219 (243)
T TIGR01978       164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL  219 (243)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEe
Confidence            9999999999999999998888544     67999955544444333248888775

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=1.1e-22  Score=155.83  Aligned_cols=114  Identities=19%  Similarity=0.252  Sum_probs=93.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....   .   ..  ..+.+.++++.+|+.+..++++..||||||||++||||++.+|++||||
T Consensus        91 ~~~~~~~t~~e~l~~~~~~~---~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (214)
T PRK13543         91 PGLKADLSTLENLHFLCGLH---G---RR--AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD  162 (214)
T ss_pred             cccccCCcHHHHHHHHHHhc---C---Cc--HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34677789999998653211   1   11  3346778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+.+.+.     +.+|++   .+||+..+..  ++++.++
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~~~i~~l~  211 (214)
T PRK13543        163 EPYANLDLEGITLVNRMISAHLRGGGAALV---TTHGAYAAPPVRTRMLTLE  211 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EecChhhhhhhcceEEEEe
Confidence            9999999999998888654     679999   6667776665  8888875

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.89  E-value=9.9e-23  Score=156.41  Aligned_cols=122  Identities=22%  Similarity=0.284  Sum_probs=94.1

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .++.+++.+|+.+|+.++.....  .....+  ..+++.++++.+|+.+..++++.+||+|||||++|||||+.+|++||
T Consensus        89 q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill  164 (220)
T TIGR02982        89 QAHNLLGFLTARQNVQMALELQP--NLSYQE--ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL  164 (220)
T ss_pred             CChhhcCCCCHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            34567778999999987643221  011112  34578899999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.      +.+|+++||..+ .. ...|++++|.+
T Consensus       165 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~  216 (220)
T TIGR02982       165 ADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-IL-DVADRIVHMED  216 (220)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEEEC
Confidence            999999999999987777442      679999665543 21 23399988753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=9.3e-23  Score=160.90  Aligned_cols=120  Identities=19%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHH-hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLA-AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~-~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+.++....... ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD  172 (265)
T PRK10575         95 PAAEGMTVRELVAIGRYPWHGALGRFGAA--DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD  172 (265)
T ss_pred             CCCCCccHHHHHHhCcccccccccCCCHH--HHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            4677889999998653111000 000011  3456788999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      +.+|++   .+||+.+...  |++++|.+
T Consensus       173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii---~sH~~~~i~~~~d~i~~l~~  223 (265)
T PRK10575        173 EPTSALDIAHQVDVLALVHRLSQERGLTVIA---VLHDINMAARYCDYLVALRG  223 (265)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999987777442      679999   6667776654  88888753

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.89  E-value=1.5e-22  Score=153.87  Aligned_cols=112  Identities=21%  Similarity=0.293  Sum_probs=90.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+++|+.+...     .    .  ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus        82 ~~~~~~~tv~e~l~~~~~-----~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  150 (201)
T cd03231          82 PGIKTTLSVLENLRFWHA-----D----H--SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD  150 (201)
T ss_pred             cccCCCcCHHHHHHhhcc-----c----c--cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            346677999999976421     0    1  2346778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      |||+|||+.++..+++.+.     +.|++++||...+... ..+++|.+
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~~  198 (201)
T cd03231         151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE-AGARELDL  198 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh-ccceeEec
Confidence            9999999999999988653     6799996665555444 23777764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=160.47  Aligned_cols=121  Identities=18%  Similarity=0.196  Sum_probs=93.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.++..... ............++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        91 ~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE  169 (265)
T PRK10253         91 TTPGDITVQELVARGRYPHQ-PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE  169 (265)
T ss_pred             cCCCCCcHHHHHHhCccccc-ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence            45667899999986521100 00000000133467889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.+|++   .+||+..+..  |++++|.+
T Consensus       170 Pt~gLD~~~~~~l~~~L~~l~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~  219 (265)
T PRK10253        170 PTTWLDISHQIDLLELLSELNREKGYTLAA---VLHDLNQACRYASHLIALRE  219 (265)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999998887542      678999   7788877766  88888754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.2e-23  Score=168.39  Aligned_cols=113  Identities=19%  Similarity=0.312  Sum_probs=96.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +..+||++||+.|+.++.+..           .....+++.+.+|+++..+++|.+||||+||||+|+|||.+.|++|+|
T Consensus        84 DARLFpH~tVrgNL~YG~~~~-----------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLm  152 (352)
T COG4148          84 DARLFPHYTVRGNLRYGMWKS-----------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLM  152 (352)
T ss_pred             ccccccceEEecchhhhhccc-----------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeee
Confidence            456899999999999885421           123456789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||.|+||..-+.+++-.+.      ++-|+|   ++|-+++..|  |+|.++.+
T Consensus       153 DEPLaSLD~~RK~EilpylERL~~e~~IPIlY---VSHS~~Ev~RLAd~vV~le~  204 (352)
T COG4148         153 DEPLASLDLPRKREILPYLERLRDEINIPILY---VSHSLDEVLRLADRVVVLEN  204 (352)
T ss_pred             cCchhhcccchhhHHHHHHHHHHHhcCCCEEE---EecCHHHHHhhhheEEEecC
Confidence            99999999999888776544      557889   7788899998  99998864

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.89  E-value=1.4e-22  Score=155.66  Aligned_cols=117  Identities=19%  Similarity=0.212  Sum_probs=90.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+|+.+|+.+.....   ......  ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++|||
T Consensus        99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll  173 (224)
T TIGR02324        99 LRVIPRVSALEVVAEPLLER---GVPREA--ARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLL  173 (224)
T ss_pred             cccCCCccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            35778899999998642111   111111  34577889999999764 5789999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh--cCceEEec
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI--RNEVCLIS  136 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~--~~~~~~~~  136 (137)
                      ||||+|||+.++..+.+.+.     +.||++   .+||...+.  .|+++.+.
T Consensus       174 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~---vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       174 DEPTASLDAANRQVVVELIAEAKARGAALIG---IFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcceeEecC
Confidence            99999999999998888544     679999   555566554  38888764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.89  E-value=1e-22  Score=173.85  Aligned_cols=116  Identities=18%  Similarity=0.324  Sum_probs=94.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----HKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      .+++.+|+.+|+.++....    .....  ..+++.++++.+|+..     ..++++.+||||||||++|||||+.+|++
T Consensus       375 ~l~~~~tv~e~l~~~~~~~----~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l  448 (520)
T TIGR03269       375 DLYPHRTVLDNLTEAIGLE----LPDEL--ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI  448 (520)
T ss_pred             ccCCCCcHHHHHHHHHHcC----CCHHH--HHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            4677899999998642111    01111  3356788999999975     57899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||||+|||+.++..+++.+.      +.+|++   .+||+.++..  |++++|.+
T Consensus       449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vsHd~~~~~~~~d~i~~l~~  503 (520)
T TIGR03269       449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFII---VSHDMDFVLDVCDRAALMRD  503 (520)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999988652      679999   7777777766  99998864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.89  E-value=5.1e-23  Score=171.37  Aligned_cols=123  Identities=20%  Similarity=0.316  Sum_probs=104.5

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      -|+.++.|.|||.+.+.-+...+.. ..+..+  ..+++.+.|+++|++. ..+++|+++|||||||++||||++.+|++
T Consensus       371 DPygSLsPRmtV~qII~EGL~vh~~-~ls~~e--R~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~  447 (534)
T COG4172         371 DPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAE--RDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL  447 (534)
T ss_pred             CCCCCCCcccCHHHHhhhhhhhcCC-CCCHHH--HHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE
Confidence            4788999999999999987544422 223334  6678999999999975 57999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++||||||+||...+.++++.++      +.+-++   ..||+..+..  ++|+++.+
T Consensus       448 i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLF---ISHDL~VvrAl~~~viVm~~  502 (534)
T COG4172         448 ILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF---ISHDLAVVRALCHRVIVMRD  502 (534)
T ss_pred             EEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEE---EeccHHHHHHhhceEEEEeC
Confidence            99999999999999999999766      557777   7899999888  99998754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.89  E-value=8.5e-23  Score=173.44  Aligned_cols=120  Identities=20%  Similarity=0.316  Sum_probs=93.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHH-hhhhcchhHHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLA-AMFNQSQAGSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~-~~~~~~~~~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+++.+|+.+|+.++....... ......  ..+++.++++.+|+.... ++++++||||||||++|||||+.+|++|||
T Consensus        88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllL  165 (500)
T TIGR02633        88 TLVPELSVAENIFLGNEITLPGGRMAYNA--MYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLIL  165 (500)
T ss_pred             ccCCCCcHHHHHHhhccccccccccCHHH--HHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            4677899999998763221000 000111  345788899999998764 677999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii---itHd~~~~~~~~d~i~~l~~  216 (500)
T TIGR02633       166 DEPSSSLTEKETEILLDIIRDLKAHGVACVY---ISHKLNEVKAVCDTICVIRD  216 (500)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCcHHHHHHhCCEEEEEeC
Confidence            99999999999999988643     569999   6677777765  99998864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.89  E-value=9.4e-23  Score=173.19  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=94.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++++|+.+|+.++.................+++.++++.+++.. ..+++++.||||||||++|||||+.+|++||||
T Consensus       349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  428 (500)
T TIGR02633       349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD  428 (500)
T ss_pred             CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence            4788899999998753110100000001113456888999999974 679999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       429 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii---vsHd~~~~~~~~d~v~~l~~  478 (500)
T TIGR02633       429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIV---VSSELAEVLGLSDRVLVIGE  478 (500)
T ss_pred             CCCCCcCHhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998876432     679999   7788888776  99998854

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.89  E-value=1.3e-22  Score=158.84  Aligned_cols=116  Identities=18%  Similarity=0.288  Sum_probs=92.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc-------CC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-------NP   85 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~-------~P   85 (137)
                      .+++.+|+++|+.++....   . ....  ..+++.++++.+|+....++++..||||||||++|||||+.       +|
T Consensus        79 ~~~~~~tv~~nl~~~~~~~---~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p  152 (248)
T PRK03695         79 TPPFAMPVFQYLTLHQPDK---T-RTEA--VASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG  152 (248)
T ss_pred             ccCCCccHHHHHHhcCccC---C-CcHH--HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence            4566789999998753111   0 1111  34577889999999988899999999999999999999998       67


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++|||||||+|||+.++..+++.+.     +.||++   .+||+..+..  |++++|.+
T Consensus       153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~  208 (248)
T PRK03695        153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM---SSHDLNHTLRHADRVWLLKQ  208 (248)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999999998888543     679999   6666666555  88888753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=8.9e-23  Score=162.94  Aligned_cols=113  Identities=21%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ..|+.+|+.++....   ......  ..+++.++++.+++. +..++++..||||||||++|||||+.+|++|||||||+
T Consensus       105 ~~tv~enl~~~~~~~---~~~~~~--~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~  179 (289)
T PRK13645        105 QETIEKDIAFGPVNL---GENKQE--AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG  179 (289)
T ss_pred             hhHHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence            369999998653211   101111  345677899999994 67899999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           96 PLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        96 gLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+.++..+++.+.      +.+|++   .+||+..+..  |++++|.+
T Consensus       180 ~LD~~~~~~l~~~l~~~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~  226 (289)
T PRK13645        180 GLDPKGEEDFINLFERLNKEYKKRIIM---VTHNMDQVLRIADEVIVMHE  226 (289)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            999999998877432      679999   5556665544  88888753

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.89  E-value=1.4e-22  Score=153.33  Aligned_cols=106  Identities=23%  Similarity=0.320  Sum_probs=87.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++....       ..  ..+++.++++.+|+.+..++++.+||||||||++||||++.+|+++|||
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  152 (198)
T TIGR01189        82 PGLKPELSALENLHFWAAIH-------GG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD  152 (198)
T ss_pred             cccccCCcHHHHHHHHHHHc-------CC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34567799999998643111       11  2345778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~  126 (137)
                      |||+|||+.++..+++.+.     +.||+++||...++.+
T Consensus       153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~  192 (198)
T TIGR01189       153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE  192 (198)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence            9999999999998887544     6799998888776665

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.6e-22  Score=158.75  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      +.+++.+|+++|+.++....  .......  ..+++.++++.+|+.    ...++++.+||||||||++|||||+.+|++
T Consensus        94 ~~~~~~~tv~~nl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  169 (258)
T PRK14241         94 PNPFPTMSIRDNVVAGLKLN--GVRNKKD--LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDV  169 (258)
T ss_pred             cccCCCCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            34677899999998753211  1001111  345678899999984    456889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |+++++.
T Consensus       170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---vsH~~~~~~~~~d~i~~l~  221 (258)
T PRK14241        170 LLMDEPCSALDPISTLAIEDLINELKQDYTIVI---VTHNMQQAARVSDQTAFFN  221 (258)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEe
Confidence            99999999999999998888554    568999   6667776654  8998874

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.8e-22  Score=157.75  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++.+|+.+|+.++....  ......+  ..+++.++++.+|+..    ..++.+.+||||||||++|||||+.+|++|
T Consensus        95 ~~~~~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  170 (252)
T PRK14256         95 NPFPAMSIYDNVIAGYKLN--GRVNRSE--ADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI  170 (252)
T ss_pred             CCCCcCcHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            4677799999998653221  0001111  3456788999999853    457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++.++..  |+++++.+
T Consensus       171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14256        171 LMDEPASALDPISTLKIEELIEELKEKYTIII---VTHNMQQAARVSDYTAFFYM  222 (252)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEE---EECCHHHHHhhCCEEEEEEC
Confidence            9999999999999998888554    568899   6667776655  88888753

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.89  E-value=1.8e-22  Score=158.27  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=92.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      +++.+|+.+|+.++..... ...........+++.++++.+|+.+..++++..||||||||++|||||+.+|+++|||||
T Consensus        86 ~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  164 (256)
T TIGR03873        86 TAVPLTVRDVVALGRIPHR-SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEP  164 (256)
T ss_pred             cCCCCCHHHHHHhcchhhh-hhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence            5667899999987531110 000000111335688899999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |+|||+.++..+.+.+.     +.||++   .+||+..+..  |++++|++
T Consensus       165 t~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  212 (256)
T TIGR03873       165 TNHLDVRAQLETLALVRELAATGVTVVA---ALHDLNLAASYCDHVVVLDG  212 (256)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence            99999999998887543     679999   5556666544  88888864

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=1.9e-22  Score=153.84  Aligned_cols=112  Identities=25%  Similarity=0.261  Sum_probs=88.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+.....       ..  ..+++.++++.+|+....++++++||||||||++|||||+.+|++||||
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  152 (207)
T PRK13539         82 NAMKPALTVAENLEFWAAFL-------GG--EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD  152 (207)
T ss_pred             CcCCCCCcHHHHHHHHHHhc-------CC--cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            44567899999997643111       11  1245788999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      |||+|||+.++..+++.+.     +.+|+++||..+.+.   .+++|-+
T Consensus       153 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~---~~~~~~~  198 (207)
T PRK13539        153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP---GARELDL  198 (207)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc---cCcEEee
Confidence            9999999999998887554     679999655555444   3777654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=159.19  Aligned_cols=117  Identities=22%  Similarity=0.229  Sum_probs=89.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++.....  ......  ..+++.++++.+|+.    +..++++.+||||||||++|||||+.+|++|
T Consensus       104 ~~~~-~tv~~nl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  178 (260)
T PRK10744        104 TPFP-MSIYDNIAFGVRLFE--KLSRAE--MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL  178 (260)
T ss_pred             ccCc-CcHHHHHhhhHhhcC--CCCHHH--HHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            3455 899999987532110  111111  345678899999974    4578899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       179 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~  230 (260)
T PRK10744        179 LLDEPCSALDPISTGRIEELITELKQDYTVVI---VTHNMQQAARCSDYTAFMYL  230 (260)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999998887554    568999   5556665544  88888753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=173.06  Aligned_cols=120  Identities=16%  Similarity=0.283  Sum_probs=94.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHH-h--hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLA-A--MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~-~--~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++.+|+.+|+.++....... .  .....  .++++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus       341 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll  418 (501)
T PRK11288        341 GIIPVHSVADNINISARRHHLRAGCLINNRW--EAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI  418 (501)
T ss_pred             CCcCCCCHHHHhccccchhhcccccccChHH--HHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence            3788899999998653211000 0  00011  235678899999994 6789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.     |.+|++   .+||+.++..  |+++++.+
T Consensus       419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii---vsHd~~~~~~~~d~i~~l~~  471 (501)
T PRK11288        419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF---VSSDLPEVLGVADRIVVMRE  471 (501)
T ss_pred             EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHhhCCEEEEEEC
Confidence            9999999999999999987542     679999   7888888876  99988853

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.6e-22  Score=159.85  Aligned_cols=117  Identities=20%  Similarity=0.162  Sum_probs=91.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      +++..|+.+|+.++....   ......  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        95 ~~~~~~v~~~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP  169 (269)
T PRK13648         95 QFVGSIVKYDVAFGLENH---AVPYDE--MHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA  169 (269)
T ss_pred             hcccccHHHHHHhhHHhc---CCCHHH--HHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            466788999987653211   001111  345678899999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+|||+.++..+++.+.      +.||+++||....+..  .|++++|++
T Consensus       170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~--~d~i~~l~~  217 (269)
T PRK13648        170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME--ADHVIVMNK  217 (269)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc--CCEEEEEEC
Confidence            99999999998877543      5799996665554432  489988864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.89  E-value=1.3e-22  Score=173.23  Aligned_cols=120  Identities=15%  Similarity=0.190  Sum_probs=93.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+................  ..+++.++++.+|+. ...++++.+||||||||+.|||||+.+|++||||
T Consensus       351 ~l~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD  428 (510)
T PRK15439        351 GLYLDAPLAWNVCALTHNRRGFWIKPAR--ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD  428 (510)
T ss_pred             CccCCCcHHHHHHhhhhhhhccccChHH--HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence            4677889999986431100000000011  334678899999997 7889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       429 EPt~gLD~~~~~~l~~~l~~l~~~g~tiIi---vsHd~~~i~~~~d~i~~l~~  478 (510)
T PRK15439        429 EPTRGVDVSARNDIYQLIRSIAAQNVAVLF---ISSDLEEIEQMADRVLVMHQ  478 (510)
T ss_pred             CCCcCcChhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888643     679999   6677777665  99998864

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=157.57  Aligned_cols=117  Identities=24%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++.....  ......  ..+++.++++.+|+.+    ..++++.+||||||||++|||||+.+|++|
T Consensus        94 ~~~~-~tv~~nl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  168 (250)
T PRK14245         94 NPFP-KSIFENVAYGLRVNG--VKDNAF--IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVL  168 (250)
T ss_pred             ccCc-ccHHHHHHHHHHHcC--CCcHHH--HHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3454 699999987532210  000011  3456788999999853    467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+..+..  |++++|.+
T Consensus       169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~v~~l~~  220 (250)
T PRK14245        169 LMDEPASALDPISTAKVEELIHELKKDYTIVI---VTHNMQQAARVSDKTAFFYM  220 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHhhCCEEEEEEC
Confidence            9999999999999999888654    568999   6666666655  89988853

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.88  E-value=1.3e-22  Score=172.52  Aligned_cols=120  Identities=13%  Similarity=0.238  Sum_probs=94.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHH--h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLA--A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~--~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++.+|+.+|+.++.......  . .....  ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|
T Consensus       340 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll  417 (501)
T PRK10762        340 GLVLGMSVKENMSLTALRYFSRAGGSLKHAD--EQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL  417 (501)
T ss_pred             CCcCCCcHHHHhhhhhhhhhcccccccCHHH--HHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence            4678899999998653111000  0 00111  345688899999995 6789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii---vtHd~~~~~~~~d~v~~l~~  470 (501)
T PRK10762        418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL---VSSEMPEVLGMSDRILVMHE  470 (501)
T ss_pred             EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHhhCCEEEEEEC
Confidence            9999999999999998888554     569999   6778888776  99998864

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.1e-22  Score=157.12  Aligned_cols=118  Identities=23%  Similarity=0.274  Sum_probs=90.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++........ ....  ..+++.++++.+|+.    +..++++.+||||||||++|||||+.+|++|
T Consensus        89 ~l~~-~tv~eni~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  164 (246)
T PRK14269         89 NVFV-KSIYENISYAPKLHGMIK-NKDE--EEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL  164 (246)
T ss_pred             cccc-ccHHHHhhhHHhhcCccc-ChHH--HHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4555 799999987532211000 0011  345678899999995    4467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++..+..  |++++|.+
T Consensus       165 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~  216 (246)
T PRK14269        165 LLDEPTSALDPISSGVIEELLKELSHNLSMIM---VTHNMQQGKRVADYTAFFHL  216 (246)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHhhCcEEEEEEC
Confidence            9999999999999998888654    679999   5666666554  88888763

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.2e-22  Score=159.03  Aligned_cols=118  Identities=24%  Similarity=0.262  Sum_probs=90.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++...+.. ......  ..+++.++++.+|+.+    ..++++.+||||||||++|||||+.+|++|
T Consensus       110 ~~~~-~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  185 (267)
T PRK14235        110 NPFP-KSIYENVAYGPRIHGL-ARSKAE--LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVI  185 (267)
T ss_pred             CCCC-CcHHHHHHHHHHhccc-ccchHH--HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            4555 5999999875422110 001111  3456788999999964    457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.+
T Consensus       186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii---vtH~~~~~~~~~d~v~~l~~  237 (267)
T PRK14235        186 LMDEPCSALDPIATAKVEELIDELRQNYTIVI---VTHSMQQAARVSQRTAFFHL  237 (267)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE---EEcCHHHHHhhCCEEEEEEC
Confidence            9999999999999998888654    568999   5666666655  88888763

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2e-22  Score=156.54  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+......   .....  ..+.+.++++.+++....++.+.+||+||+||++|||||+.+|+++|||
T Consensus        81 ~~~~~~~t~~enl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (237)
T TIGR00968        81 YALFKHLTVRDNIAFGLEIRK---HPKAK--IKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD  155 (237)
T ss_pred             hhhccCCcHHHHHHhHHHhcC---CCHHH--HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            456778999999986532111   01111  3356788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+++.+.      +.||+++||   +..++..  |++++|.
T Consensus       156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH---~~~~~~~~~d~i~~l~  205 (237)
T TIGR00968       156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH---DQEEAMEVADRIVVMS  205 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHhhcCEEEEEE
Confidence            9999999999998888554      579999555   5555444  7888775

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.88  E-value=1.7e-22  Score=159.68  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=90.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++.+|+.+++.+......  ......  ..+++.++++.+|+. ...++++.+||||||||++||+||+.+|++|||||
T Consensus       100 ~~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  175 (267)
T PRK15112        100 LNPRQRISQILDFPLRLNT--DLEPEQ--REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE  175 (267)
T ss_pred             cCcchhHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            4567789999876432110  011111  345678899999994 67788999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      +.||++   .+|++..+..  |++++|++
T Consensus       176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii---vsH~~~~~~~~~d~i~~l~~  225 (267)
T PRK15112        176 ALASLDMSMRSQLINLMLELQEKQGISYIY---VTQHLGMMKHISDQVLVMHQ  225 (267)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            999999999998877443      668999   5556666554  89988864

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=1.4e-22  Score=193.67  Aligned_cols=118  Identities=17%  Similarity=0.288  Sum_probs=98.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||+||+.++...+.   ....+  .++++.++++.+||.+..++++++||||||||++||+||+.+|++||||
T Consensus      1012 ~~L~~~LTV~E~L~f~~~lkg---~~~~~--~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257      1012 NILFHHLTVAEHILFYAQLKG---RSWEE--AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred             CcCCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            357888999999998643321   11112  4567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.+++.+++.++    |.+|++   +||++.+|..  ||+++|++
T Consensus      1087 EPTSGLDp~sr~~l~~lL~~l~~g~TIIl---tTHdmdea~~laDrI~iL~~ 1135 (2272)
T TIGR01257      1087 EPTSGVDPYSRRSIWDLLLKYRSGRTIIM---STHHMDEADLLGDRIAIISQ 1135 (2272)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999888654    668999   7788888865  99999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.8e-22  Score=156.66  Aligned_cols=118  Identities=20%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++. |+++|+.++.....  . ........+.+.++++.+|+.+    ..++.+..||||||||++|||||+.+|++|
T Consensus        96 ~~~~~-tv~~ni~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  171 (251)
T PRK14244         96 NPFPK-SIYDNVAYGPKLHG--L-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML  171 (251)
T ss_pred             ccccC-CHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            35554 99999986532110  0 0001113456778999999964    457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|++
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~  223 (251)
T PRK14244        172 LMDEPCSALDPVATNVIENLIQELKKNFTIIV---VTHSMKQAKKVSDRVAFFQS  223 (251)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHhhcCEEEEEEC
Confidence            9999999999999998888654    679999   5566666544  88888864

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.88  E-value=2.9e-22  Score=157.45  Aligned_cols=111  Identities=17%  Similarity=0.166  Sum_probs=89.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++.+|+.+++.+....    .   ..  ....+.++++.+|+.+..++++++||||||||++||+||+.+|+++|||||
T Consensus        72 ~~~~~tv~e~l~~~~~~----~---~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP  142 (246)
T cd03237          72 ADYEGTVRDLLSSITKD----F---YT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP  142 (246)
T ss_pred             CCCCCCHHHHHHHHhhh----c---cc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            35678999998653210    0   01  123456789999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |++||+.++..+++.+.      +.+|++   .+||+..+..  |+++++.
T Consensus       143 t~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsHd~~~~~~~~d~i~~l~  190 (246)
T cd03237         143 SAYLDVEQRLMASKVIRRFAENNEKTAFV---VEHDIIMIDYLADRLIVFE  190 (246)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEc
Confidence            99999999998877432      679999   7777777665  8998875

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=156.01  Aligned_cols=111  Identities=29%  Similarity=0.364  Sum_probs=87.8

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++ .|+.+|+.++....       ..  ...++.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||
T Consensus        88 ~~~-~tv~e~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  157 (241)
T PRK14250         88 LFE-GTVKDNIEYGPMLK-------GE--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE  157 (241)
T ss_pred             hch-hhHHHHHhcchhhc-------Cc--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            443 69999987643111       11  234677899999996 57789999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      |.||++   .+||+.++..  |++++|.+
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~---~sH~~~~~~~~~d~i~~l~~  207 (241)
T PRK14250        158 PTSALDPTSTEIIEELIVKLKNKMNLTVIW---ITHNMEQAKRIGDYTAFLNK  207 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeccHHHHHHhCCEEEEEeC
Confidence            999999999998877442      679999   5666666544  88888753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.6e-22  Score=155.78  Aligned_cols=117  Identities=23%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ +|+++|+.++.....  ......  ..+++.++++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus        94 ~~~~-~t~~~ni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  168 (250)
T PRK14240         94 NPFP-MSIYDNVAYGPRTHG--IKDKKK--LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVL  168 (250)
T ss_pred             ccCc-ccHHHHHHHHHHhcC--CCCHHH--HHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            4555 899999987532110  000111  345677889998874    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~v~~l~~  220 (250)
T PRK14240        169 LMDEPTSALDPISTLKIEELIQELKKDYTIVI---VTHNMQQASRISDKTAFFLN  220 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EEeCHHHHHhhCCEEEEEEC
Confidence            9999999999999998887554    569999   5666665554  88888864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.88  E-value=2e-22  Score=172.44  Aligned_cols=117  Identities=22%  Similarity=0.356  Sum_probs=91.9

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +++.+|+.+++.+......  ......  ..+++.++++.+|+.+   ..++++.+|||||||||+|||||+.+|++|||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll  180 (529)
T PRK15134        105 LNPLHTLEKQLYEVLSLHR--GMRREA--ARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA  180 (529)
T ss_pred             cCchhhHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4566788888875421110  111112  4567889999999975   35889999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      +.||++   .|||+.++..  |+|++|.+
T Consensus       181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~dri~~l~~  232 (529)
T PRK15134        181 DEPTTALDVSVQAQILQLLRELQQELNMGLLF---ITHNLSIVRKLADRVAVMQN  232 (529)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE---EcCcHHHHHHhcCEEEEEEC
Confidence            99999999999998887543      679999   7777777765  99998864

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.4e-22  Score=155.93  Aligned_cols=117  Identities=23%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....  .. . ......+++.++++.+++.    +..++++.+||||||||++|||||+.+|++|
T Consensus        96 ~~~~-~tv~enl~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  170 (252)
T PRK14239         96 NPFP-MSIYENVVYGLRLK--GI-K-DKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKII  170 (252)
T ss_pred             ccCc-CcHHHHHHHHHHHc--CC-C-cHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3454 89999998753211  10 0 0111345677889999874    3568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.+
T Consensus       171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14239        171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLL---VTRSMQQASRISDRTGFFLD  222 (252)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHhhCCeEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888654    568999   6666666554  89988753

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.88  E-value=4.2e-22  Score=153.62  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=88.6

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP   96 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg   96 (137)
                      .+|+.+|+.++..... ...........+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus        65 ~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~  143 (223)
T TIGR03771        65 PISVAHTVMSGRTGHI-GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTG  143 (223)
T ss_pred             CccHHHHHHhcccccc-ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            4799999986531110 000000101335678899999999888999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEe
Q psy317           97 LHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus        97 LD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~  135 (137)
                      ||+.++..+++.+.     +.||++   .+||+.++..  |+++++
T Consensus       144 LD~~~~~~l~~~l~~~~~~~~tvii---~sH~~~~~~~~~d~i~~l  186 (223)
T TIGR03771       144 LDMPTQELLTELFIELAGAGTAILM---TTHDLAQAMATCDRVVLL  186 (223)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEE
Confidence            99999998888654     569999   5666666554  888876

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.88  E-value=2.5e-22  Score=155.35  Aligned_cols=119  Identities=20%  Similarity=0.294  Sum_probs=84.5

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +...|+.+|+.++.........  ........+.++++.+  ++....++++.+||||||||++|||||+.+|++|||||
T Consensus        87 ~~~~tv~~nl~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  164 (237)
T cd03252          87 LFNRSIRDNIALADPGMSMERV--IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE  164 (237)
T ss_pred             hccchHHHHhhccCCCCCHHHH--HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            3457999999864311000000  0000111234556666  66667788999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.    +.+|+++||..+.+..  .|++++|.+
T Consensus       165 P~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~--~d~v~~l~~  211 (237)
T cd03252         165 ATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN--ADRIIVMEK  211 (237)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence            999999999998888654    5799996665555431  388888864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.88  E-value=4.4e-22  Score=156.22  Aligned_cols=117  Identities=18%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++.+|+.+|+.+......  ......  ...++.++++.+++.. ..++.+.+||||||||++|||||+.+|++|||||
T Consensus       102 ~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE  177 (258)
T PRK11701        102 LRMQVSAGGNIGERLMAVG--ARHYGD--IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE  177 (258)
T ss_pred             cCccccHHHHHHHHHHHhc--cCcHHH--HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            4566789999865321110  000011  3456788999999974 6789999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.      |.+|++   .+||+.++..  |+++++.+
T Consensus       178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~---isH~~~~~~~~~d~i~~l~~  227 (258)
T PRK11701        178 PTGGLDVSVQARLLDLLRGLVRELGLAVVI---VTHDLAVARLLAHRLLVMKQ  227 (258)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            999999999998888532      679999   6677777754  88888754

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.5e-22  Score=156.43  Aligned_cols=116  Identities=22%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ +|+.+|+.++.....  ......  ..+++.++++.+|+.    +..++++..||||||||++|||||+.+|++|
T Consensus        98 ~l~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  172 (259)
T PRK14260         98 NPFP-MSIYENVAYGVRISA--KLPQAD--LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVL  172 (259)
T ss_pred             ccCC-ccHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3455 899999987532110  001111  345677889999884    4678899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++.++..  |++++|.
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~i~~~~d~i~~l~  223 (259)
T PRK14260        173 LMDEPCSALDPIATMKVEELIHSLRSELTIAI---VTHNMQQATRVSDFTAFFS  223 (259)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCeEEEEe
Confidence            9999999999999998888554    468999   6677777765  9999885

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.88  E-value=2.4e-22  Score=175.30  Aligned_cols=125  Identities=24%  Similarity=0.328  Sum_probs=96.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC------CCCHHHHHHHHHHHHHhcC
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS------NLSGGQKKRLSIALELVNN   84 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~------~LSgGqkqrv~IArAL~~~   84 (137)
                      ++.+++.+||+||+.++..++........+  ..++++++++.+|+.+..|++++      .||||||||++||++|+.+
T Consensus       107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~  184 (617)
T TIGR00955       107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKE--KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD  184 (617)
T ss_pred             ccccCccCcHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence            345788999999999875433211111122  45678999999999998888876      4999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |++++|||||+|||+.++..+++.++     |.||++++|....--.-.-|++++|++
T Consensus       185 p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~  242 (617)
T TIGR00955       185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE  242 (617)
T ss_pred             CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence            99999999999999999999988554     679999655543211223388888864

>PLN03211 ABC transporter G-25; Provisional

Probab=99.88  E-value=3e-22  Score=176.09  Aligned_cols=124  Identities=21%  Similarity=0.303  Sum_probs=94.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----ccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----TMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      +.+++.+||+||+.+....+........+  ..++++++++.+||.+..+     +.++.||||||||++||++|+.+|+
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~  226 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQE--KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS  226 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence            45778899999999864322111111112  3457889999999987664     4567899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||||||+|||+.++..+++.++     |.||++++|..+.--...-|++++|++
T Consensus       227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~  282 (659)
T PLN03211        227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE  282 (659)
T ss_pred             EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC
Confidence            999999999999999999888654     679999666665322233488888764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.1e-22  Score=157.81  Aligned_cols=114  Identities=21%  Similarity=0.283  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....   ... ..  ..+++.++++.+++.    +..++++.+||||||||++|||||+.+|++|
T Consensus       104 ~l~~-~tv~enl~~~~~~~---~~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  176 (269)
T PRK14259        104 NPFP-KSIYENIAFGARIN---GYT-GD--MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVI  176 (269)
T ss_pred             ccch-hhHHHHHhhhhhhc---CCc-HH--HHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3455 59999998754221   110 11  234567788888763    4578899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++++|.
T Consensus       177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        177 LMDEPCSALDPISTLKIEETMHELKKNFTIVI---VTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEe
Confidence            9999999999999998888654    568999   6667777765  8998885

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.7e-22  Score=154.90  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ +|+++|+.++.....  ......  ..+++.++++.+|+.    +..++++..||||||||++|||||+.+|++|
T Consensus        95 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  169 (251)
T PRK14270         95 NPFP-MSIYDNVAYGPRIHG--IKDKKE--LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVI  169 (251)
T ss_pred             CcCC-CcHHHHHHhHHHhcC--CCcHHH--HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3454 899999986532210  000111  345677899999874    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+..+..  |++++|.+
T Consensus       170 llDEP~~~LD~~~~~~l~~~L~~~~~~~tiii---vsH~~~~~~~~~d~v~~l~~  221 (251)
T PRK14270        170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVI---VTHNMQQASRVSDYTAFFLM  221 (251)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE---EEcCHHHHHHhcCEEEEEEC
Confidence            9999999999999998888554    568999   5556665544  88888754

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.88  E-value=5.8e-22  Score=152.90  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=88.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++ .|+++|+.+.....  ..   ..  ..+++.++++.+|+. ...++++.+|||||+||++|||||+.+|+++||||
T Consensus        92 l~~-~tv~enl~~~~~~~--~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (225)
T PRK10247         92 LFG-DTVYDNLIFPWQIR--NQ---QP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE  163 (225)
T ss_pred             ccc-ccHHHHHHhHHhhc--CC---Ch--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            444 69999998653211  10   11  234677899999996 47799999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ||+|||+.++..+.+.+.      +.+|+++||..+.+.  ..|++++|.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~--~~d~i~~l~  211 (225)
T PRK10247        164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN--HADKVITLQ  211 (225)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH--hCCEEEEEe
Confidence            999999999998876322      679999666665553  249999884

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=1.8e-22  Score=159.11  Aligned_cols=116  Identities=15%  Similarity=0.264  Sum_probs=98.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+|+.+||.+.+.|...++.   ++..+  ..+++..||+++++..+..+++.+||.|++|++.+-.|++|+|+++||||
T Consensus        82 GLy~k~tv~dql~yla~LkG---m~~~e--~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE  156 (300)
T COG4152          82 GLYPKMTVEDQLKYLAELKG---MPKAE--IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE  156 (300)
T ss_pred             ccCccCcHHHHHHHHHHhcC---CcHHH--HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence            58999999999998765542   23334  67789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||||.+.+.+.+.     ..|+||++   -+|.|+.+-+  |++|+|.
T Consensus       157 PFSGLDPVN~elLk~~I~~lk~~GatIif---SsH~Me~vEeLCD~llmL~  204 (300)
T COG4152         157 PFSGLDPVNVELLKDAIFELKEEGATIIF---SSHRMEHVEELCDRLLMLK  204 (300)
T ss_pred             CccCCChhhHHHHHHHHHHHHhcCCEEEE---ecchHHHHHHHhhhhheec
Confidence            9999999999876664     33889999   5566666666  8888874

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.4e-22  Score=154.60  Aligned_cols=116  Identities=23%  Similarity=0.266  Sum_probs=88.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++.....  ......  ..+++.++++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus        95 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  169 (251)
T PRK14249         95 NPFP-KSIFDNVAFGPRMLG--TTAQSR--LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVI  169 (251)
T ss_pred             ccCc-CcHHHHHhhHHHhcC--CChhhH--HHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3555 599999987542210  000111  334567788888874    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.
T Consensus       170 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tili---vsh~~~~~~~~~d~i~~l~  220 (251)
T PRK14249        170 LMDEPCSALDPVSTMRIEELMQELKQNYTIAI---VTHNMQQAARASDWTGFLL  220 (251)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhCCEEEEEe
Confidence            9999999999999998877554    579999   6666666665  8888875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.2e-22  Score=154.42  Aligned_cols=117  Identities=22%  Similarity=0.272  Sum_probs=89.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++.....  ......  ..+.+.++++.+|+..    ..++++.+||||||||++|||||+.+|++|
T Consensus        94 ~~~~-~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ll  168 (250)
T PRK14262         94 TPFP-MSIYDNVAFGPRIHG--VKSKHK--LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVI  168 (250)
T ss_pred             ccCc-ccHHHHHHHHHHHcC--CCcHHH--HHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEE
Confidence            3454 899999987532110  000011  3445778899999853    468899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili---~sH~~~~~~~~~d~i~~l~~  220 (250)
T PRK14262        169 LLDEPTSALDPIATQRIEKLLEELSENYTIVI---VTHNIGQAIRIADYIAFMYR  220 (250)
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888554    569999   5566665544  89988764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.87  E-value=2.6e-22  Score=154.29  Aligned_cols=117  Identities=19%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ..|+++|+.++.............  ....+.++++.+  |+....++++.+||||||||++|||||+.+|++|||||||
T Consensus       101 ~~tv~~nl~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  178 (226)
T cd03248         101 ARSLQDNIAYGLQSCSFECVKEAA--QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT  178 (226)
T ss_pred             hhhHHHHhccccCCCCHHHHHHHH--HHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            369999997653211000000000  112356788888  8888889999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           95 SPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||+.++..+++.+.    +.||+++||....+. . .|++++|.+
T Consensus       179 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~-~d~i~~l~~  223 (226)
T cd03248         179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-R-ADQILVLDG  223 (226)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-h-CCEEEEecC
Confidence            9999999998888654    458999666655552 2 499998864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.87  E-value=5.4e-22  Score=153.10  Aligned_cols=120  Identities=19%  Similarity=0.259  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .++ ..|+++|+.++.............  ....+.++++.+  ++....++++.+||||||||++|||||+.+|+++||
T Consensus        86 ~~~-~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL  162 (234)
T cd03251          86 FLF-NDTVAENIAYGRPGATREEVEEAA--RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILIL  162 (234)
T ss_pred             eec-cccHHHHhhccCCCCCHHHHHHHH--HHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            344 479999998753211000000000  111345667766  677778889999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.    +.+|+++||..+.+..  .|++++|.+
T Consensus       163 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l~~  211 (234)
T cd03251         163 DEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVLED  211 (234)
T ss_pred             eCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEecC
Confidence            99999999999998888654    6699996666666543  489988853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.6e-22  Score=153.95  Aligned_cols=119  Identities=24%  Similarity=0.240  Sum_probs=88.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      +.+++.+|+.+|+.++....  .......  ..+.+.+.++.+++.    +..++++++||||||||++|||||+.+|++
T Consensus        94 ~~~~~~~t~~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  169 (252)
T PRK14272         94 PNPFPTMSVFDNVVAGLKLA--GIRDRDH--LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEI  169 (252)
T ss_pred             CccCcCCCHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            35677799999998653211  0000111  334566777777753    456888999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||||+|||+.++..+++.++    +.||+++   +|+..++..  |++++|.+
T Consensus       170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~---sH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14272        170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV---THNMHQAARVSDTTSFFLV  222 (252)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE---eCCHHHHHHhCCEEEEEEC
Confidence            99999999999999998888554    5789994   555555544  88888754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.87  E-value=8e-22  Score=154.05  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++..|+.+|+.+.........  ...  ....+.++++.+|+. ...++.+..||||||||++|||||+.+|++|||||
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE  174 (253)
T TIGR02323        99 LRMRVSAGANIGERLMAIGARH--YGN--IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE  174 (253)
T ss_pred             cCccccHHHHHHHHHHHhcccc--hHH--HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            3455688888864321100000  011  345678899999997 47899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.+++.+++.+.      +.+|++   .+|++..+..  |++++|.+
T Consensus       175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~---vsH~~~~~~~~~d~~~~l~~  224 (253)
T TIGR02323       175 PTGGLDVSVQARLLDLLRGLVRDLGLAVII---VTHDLGVARLLAQRLLVMQQ  224 (253)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence            999999999998877432      679999   5566666654  88887753

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.6e-22  Score=156.13  Aligned_cols=116  Identities=23%  Similarity=0.273  Sum_probs=87.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++.....  ......  ..+.+.+.++.+++.    ...++++++||||||||++|||||+.+|++|
T Consensus       112 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~ll  186 (268)
T PRK14248        112 NPFP-KSIYNNITHALKYAG--ERRKSV--LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVL  186 (268)
T ss_pred             ccCc-ccHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEE
Confidence            3455 599999987532110  000011  234567788988884    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.
T Consensus       187 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~v~~l~  237 (268)
T PRK14248        187 LLDEPASALDPISNAKIEELITELKEEYSIII---VTHNMQQALRVSDRTAFFL  237 (268)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE---EEeCHHHHHHhCCEEEEEE
Confidence            9999999999999998888554    568999   6666666554  8888875

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.4e-22  Score=155.22  Aligned_cols=120  Identities=23%  Similarity=0.264  Sum_probs=92.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      .+.+++.+|+++|+.++....  ......+  ..+++.++++.+|+.    +..++++..||+|||||++|||||+.+|+
T Consensus        98 ~~~~~~~~tv~~nl~~~~~~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~  173 (257)
T PRK14246         98 QPNPFPHLSIYDNIAYPLKSH--GIKEKRE--IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK  173 (257)
T ss_pred             CCccCCCCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            345677899999998753211  0100111  345678899999996    35678999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++||||||+|||+.++..+.+.+.    +.||++   .+|+...+..  +++++|.+
T Consensus       174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiil---vsh~~~~~~~~~d~v~~l~~  227 (257)
T PRK14246        174 VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI---VSHNPQQVARVADYVAFLYN  227 (257)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999999999998888654    469999   6666666654  88888753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.6e-22  Score=157.74  Aligned_cols=117  Identities=22%  Similarity=0.263  Sum_probs=89.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++....  .......  ..+++.++++.+|+.    +..++++..||||||||++|||||+.+|++|
T Consensus       130 ~l~~-~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ll  204 (286)
T PRK14275        130 NPFP-KSIFDNIAYGPRLH--GINDKKQ--LEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEIL  204 (286)
T ss_pred             CCCc-cCHHHHHHhHHHhc--CCCcHHH--HHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3555 59999998753211  0000011  345677889998873    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++++|.+
T Consensus       205 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi---vsH~~~~~~~~~d~i~~L~~  256 (286)
T PRK14275        205 LLDEPTSALDPKATAKIEDLIQELRGSYTIMI---VTHNMQQASRVSDYTMFFYE  256 (286)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888654    458999   6667777655  99988864

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.6e-22  Score=154.01  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=88.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .++ ..|+++|+.++....  .......  ..+++.++++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus        95 ~~~-~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~ll  169 (251)
T PRK14251         95 TPF-PFSVYDNVAYGLKIA--GVKDKEL--IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVV  169 (251)
T ss_pred             ccC-CCcHHHHHHHHHHHc--CCCCHHH--HHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            345 479999998653211  0000011  234677889999984    4468889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       170 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~  221 (251)
T PRK14251        170 LLDEPTSALDPISSSEIEETLMELKHQYTFIM---VTHNLQQAGRISDQTAFLMN  221 (251)
T ss_pred             EecCCCccCCHHHHHHHHHHHHHHHcCCeEEE---EECCHHHHHhhcCEEEEEEC
Confidence            9999999999999998888654    569999   5556665544  88888753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.87  E-value=4.2e-22  Score=190.50  Aligned_cols=118  Identities=19%  Similarity=0.308  Sum_probs=97.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|++|++.+...++.   .+..+  .+++++++++.+||.+..++++++||||||||++||+||+.+|++||||
T Consensus      2021 ~~L~~~LTv~E~L~l~a~l~g---~~~~~--~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257      2021 DAIDDLLTGREHLYLYARLRG---VPAEE--IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred             ccCCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            457888999999987543321   11112  4457788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.+++.+++.+.     |.+|++   +||++.++..  ||++++.+
T Consensus      2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIIL---tTH~mee~e~lcDrV~IL~~ 2145 (2272)
T TIGR01257      2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVL---TSHSMEECEALCTRLAIMVK 2145 (2272)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999888543     679999   7778887766  99998854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=154.35  Aligned_cols=117  Identities=19%  Similarity=0.201  Sum_probs=89.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++.....  ..+..+  ..+++.++++.+++.+    ..++++.+||||||||++|||||+.+|++|
T Consensus        98 ~l~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vl  172 (261)
T PRK14258         98 NLFP-MSVYDNVAYGVKIVG--WRPKLE--IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVL  172 (261)
T ss_pred             ccCc-ccHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4555 899999986532110  001111  2356788999998753    468889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.      +.||++   .+||+.++..  |+++++.+
T Consensus       173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii---vsH~~~~i~~~~d~i~~l~~  226 (261)
T PRK14258        173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI---VSHNLHQVSRLSDFTAFFKG  226 (261)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhcCEEEEEcc
Confidence            9999999999999998877543      679999   6677776665  89988864

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.87  E-value=1.1e-21  Score=153.91  Aligned_cols=113  Identities=21%  Similarity=0.305  Sum_probs=86.9

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+.+|+.+++.+.....   ..  ..  ..+++.++++.+|+.+   ..++++.+||||||||++|||||+.+|++||||
T Consensus        93 ~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD  165 (254)
T PRK10418         93 NPLHTMHTHARETCLAL---GK--PA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD  165 (254)
T ss_pred             CccccHHHHHHHHHHHc---CC--Ch--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34568888876432111   00  11  2356788999999986   468899999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.+|++   .+|++.++..  |++++|.+
T Consensus       166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~---~sH~~~~~~~~~d~v~~l~~  216 (254)
T PRK10418        166 EPTTDLDVVAQARILDLLESIVQKRALGMLL---VTHDMGVVARLADDVAVMSH  216 (254)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999988877433      579999   5666666544  88888753

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=152.86  Aligned_cols=117  Identities=21%  Similarity=0.228  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++....   ... ......+++.+.++.+|+.    +..++++.+||||||||++|||||+.+|++|
T Consensus        93 ~~~~-~tv~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  167 (249)
T PRK14253         93 NPFP-MSIYENVAYGLRAQ---GIK-DKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVI  167 (249)
T ss_pred             CcCc-ccHHHHHHhHHHhc---CCC-chHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            4455 89999998653211   000 0111345677788888874    3567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++.++..  |++++|.+
T Consensus       168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~---~sh~~~~~~~~~d~i~~l~~  219 (249)
T PRK14253        168 LMDEPTSALDPIATHKIEELMEELKKNYTIVI---VTHSMQQARRISDRTAFFLM  219 (249)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999998887554    568999   5666666555  89888864

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=3.7e-22  Score=166.26  Aligned_cols=120  Identities=22%  Similarity=0.325  Sum_probs=98.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      |+.++-|-.|+...+.-...++.  ...+..  .++++.++|+.+||.+   ..+.+|++|||||||||+||+||+.+|+
T Consensus       102 PMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~--Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~  177 (534)
T COG4172         102 PMTSLNPLHTIGKQLAEVLRLHR--GLSRAA--ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD  177 (534)
T ss_pred             cccccCcHhHHHHHHHHHHHHHh--cccHHH--HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence            56667777777777665543332  222223  6778999999999965   4588999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +||.||||++||...+.+|++.++      |-.+++   .|||+..+.+  |+||++.
T Consensus       178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf---ITHDL~iVr~~ADrV~VM~  232 (534)
T COG4172         178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILF---ITHDLGIVRKFADRVYVMQ  232 (534)
T ss_pred             eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE---EeccHHHHHHhhhhEEEEe
Confidence            999999999999999999999766      458888   8999999998  9999974

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=154.11  Aligned_cols=116  Identities=24%  Similarity=0.327  Sum_probs=87.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....  ......+  ..+++.++++.+|+.+    ..++++.+||||||||++|||||+.+|++|
T Consensus       103 ~~~~-~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~ll  177 (259)
T PRK14274        103 NPFP-QSIFDNVAYGPRIH--GTKNKKK--LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL  177 (259)
T ss_pred             cccc-cCHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4555 49999998653211  0000011  3456778899999853    467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+..+..  |++++|.
T Consensus       178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~  228 (259)
T PRK14274        178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVI---VTHNMQQAARVSDQTAFFY  228 (259)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhCCEEEEEE
Confidence            9999999999999998888554    568999   5555555544  8888875

>PRK13409 putative ATPase RIL; Provisional

Probab=99.87  E-value=9.1e-22  Score=171.22  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=93.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++++||.+|+.++..     ..   .  ....+.++++.+|+.+..++++.+|||||||||+||+||+.+|++|||||
T Consensus       410 ~~~~~~tv~e~l~~~~~-----~~---~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE  479 (590)
T PRK13409        410 KPDYDGTVEDLLRSITD-----DL---G--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE  479 (590)
T ss_pred             cCCCCCcHHHHHHHHhh-----hc---C--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            34678999999976421     10   1  12356789999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.++      +.+|++   .+||+.++..  |+++++.+
T Consensus       480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvii---vsHD~~~~~~~aDrvivl~~  529 (590)
T PRK13409        480 PSAHLDVEQRLAVAKAIRRIAEEREATALV---VDHDIYMIDYISDRLMVFEG  529 (590)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEcC
Confidence            999999999998888543      679999   7888888776  99998863

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.87  E-value=1.8e-21  Score=151.81  Aligned_cols=125  Identities=15%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHH-hhhh-cchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLA-AMFN-QSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~-~~~~-~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      +.+++.+|+.+++.+........ .... ......+++.++++.+|+. ...++++. .||||||||++|||||+.+|++
T Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  172 (252)
T CHL00131         93 PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSEL  172 (252)
T ss_pred             ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence            34667789999987643211000 0000 0001235678899999997 46788887 5999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |||||||+|||+.++..+++.+.     +.||+++||..+.+.....|++++|.
T Consensus       173 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~  226 (252)
T CHL00131        173 AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ  226 (252)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe
Confidence            99999999999999998887543     67999955554444332248888775

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.87  E-value=9.2e-22  Score=169.09  Aligned_cols=117  Identities=17%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+++|+.+.....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        95 ~l~~~lTV~EnL~l~~~~~---~~~~~e--~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE  169 (549)
T PRK13545         95 GLNGQLTGIENIELKGLMM---GLTKEK--IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE  169 (549)
T ss_pred             ccCCCCcHHHHHHhhhhhc---CCCHHH--HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            4567789999998643211   111112  34567789999999998999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.     |.+|++   .+||+.++..  |++++|.+
T Consensus       170 PTsgLD~~sr~~LlelL~el~~~G~TIII---VSHdl~~i~~l~DrIivL~~  218 (549)
T PRK13545        170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFF---ISHSLSQVKSFCTKALWLHY  218 (549)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999998888653     679999   5666666655  88888753

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=152.57  Aligned_cols=117  Identities=20%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....  .. . ......+++.+.++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus        96 ~~~~-~tv~~nl~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  170 (252)
T PRK14255         96 NPFP-FSIYENVIYGLRLA--GV-K-DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVI  170 (252)
T ss_pred             ccCC-CcHHHHHHHHHHHc--CC-C-CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4555 79999998753211  00 0 0101234566788888763    4567899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+.+.+.    +.||++   .+||+..+..  |++++|.+
T Consensus       171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14255        171 LLDEPTSALDPISSTQIENMLLELRDQYTIIL---VTHSMHQASRISDKTAFFLT  222 (252)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHhCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999998887554    468999   5556666544  88888753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.87  E-value=1.2e-21  Score=155.93  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh---------c
Q psy317           14 MDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV---------N   83 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~---------~   83 (137)
                      +++.+|+.+|+.++...... ......+  ..+++.++++.+|+....++++.+||||||||++|||||+         .
T Consensus        94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~  171 (272)
T PRK13547         94 PAFAFSAREIVLLGRYPHARRAGALTHR--DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ  171 (272)
T ss_pred             CCCCCcHHHHHhhcccccccccccCCHH--HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence            45568999999875321100 0000011  3356788999999998899999999999999999999999         5


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|++|||||||+|||+.++..+++.++      +.||++   .+||+..+..  |++++|.+
T Consensus       172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii---isH~~~~~~~~~d~i~~l~~  230 (272)
T PRK13547        172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA---IVHDPNLAARHADRIAMLAD  230 (272)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            999999999999999999999888543      579999   5556665544  88888864

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.5e-21  Score=156.11  Aligned_cols=114  Identities=23%  Similarity=0.279  Sum_probs=87.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.+......   .. ..  ..+++.++++.+|+.    +..++++.+||||||||++|||||+.+|++|
T Consensus       130 ~l~~-~tv~enl~~~~~~~~---~~-~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lL  202 (285)
T PRK14254        130 NPFP-KSIYDNVAYGLKIQG---YD-GD--IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVI  202 (285)
T ss_pred             ccCc-CCHHHHHHHHHHHcC---Cc-HH--HHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3555 499999986532211   11 11  345678899999985    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceE-Eec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVC-LIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~-~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |+++ ++.
T Consensus       203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii---~tH~~~~i~~~~dri~v~l~  254 (285)
T PRK14254        203 LMDEPASALDPVATSKIEDLIEELAEEYTVVI---VTHNMQQAARISDKTAVFLT  254 (285)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhcCEEEEEee
Confidence            9999999999999998888654    458999   5666666654  8865 444

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.87  E-value=1.1e-21  Score=150.19  Aligned_cols=107  Identities=22%  Similarity=0.357  Sum_probs=82.0

Q ss_pred             CCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccC-----------CCCCHHHHHHHHHHHHHhcCCC
Q psy317           18 KTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMT-----------SNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        18 lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~-----------~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      .|+.+|+.++...         .  ..+.+.++++.+++.+..++.+           .+||||||||++|||||+.+|+
T Consensus        92 ~tv~e~l~~~~~~---------~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          92 GTLRDNITLGAPL---------A--DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             chHHHHhhcCCCC---------C--CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            6999998764210         1  1234556788888877666544           6999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||||||+|||+.++..+++.+.    +.+|+++||..+.+  ...|++++|.+
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~--~~~d~v~~l~~  213 (220)
T cd03245         161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL--DLVDRIIVMDS  213 (220)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH--HhCCEEEEEeC
Confidence            999999999999999998888665    35899966665543  23489988754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=154.13  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.++....   .....+  ....+.++++.+++.+..++++.+|||||+||++||+||+.+|++|||||
T Consensus        95 ~~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE  169 (264)
T PRK13546         95 GLSGQLTGIENIEFKMLCM---GFKRKE--IKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE  169 (264)
T ss_pred             CCCCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            3556789999998653211   111112  33456778899999998999999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||+.++..+++.+.     +.+|+++|   |++..+..  +++++|.
T Consensus       170 Pt~gLD~~~~~~l~~~L~~~~~~g~tiIiis---H~~~~i~~~~d~i~~l~  217 (264)
T PRK13546        170 ALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS---HNLGQVRQFCTKIAWIE  217 (264)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCEEEEEc---CCHHHHHHHcCEEEEEE
Confidence            999999999888887543     67999955   45554433  7887774

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.8e-21  Score=154.18  Aligned_cols=117  Identities=22%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++. |+++|+.++....  .......  ..+++.++++.+++..    ..++++.+||||||||++|||||+.+|++|
T Consensus       116 ~l~~~-tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  190 (272)
T PRK14236        116 NPFPK-SIYENVVYGLRLQ--GINNRRV--LDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVL  190 (272)
T ss_pred             ccCcc-cHHHHHHHHHHhc--CCCcHHH--HHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEE
Confidence            45554 9999998653211  0000011  2346778899999853    568889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+|++.++..  |++++|.+
T Consensus       191 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~~  242 (272)
T PRK14236        191 LLDEPTSALDPISTLKIEELITELKSKYTIVI---VTHNMQQAARVSDYTAFMYM  242 (272)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE---EeCCHHHHHhhCCEEEEEEC
Confidence            9999999999999998888554    568999   6666666554  88888764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1e-21  Score=166.64  Aligned_cols=92  Identities=18%  Similarity=0.320  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeee
Q psy317           43 GSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDY  116 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~  116 (137)
                      ..+++.++++.+++. +..++++.+||||||||++||||++.+|++|||||||+|||+.++..+++.+     .|.||++
T Consensus       367 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~  446 (491)
T PRK10982        367 MKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII  446 (491)
T ss_pred             HHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence            345678899999995 5679999999999999999999999999999999999999999999998755     3779999


Q ss_pred             eccccchhhhhhc--CceEEecC
Q psy317          117 TGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       117 ~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                         .+||+.++..  |+++++.+
T Consensus       447 ---vsHd~~~~~~~~d~v~~l~~  466 (491)
T PRK10982        447 ---ISSEMPELLGITDRILVMSN  466 (491)
T ss_pred             ---ECCChHHHHhhCCEEEEEEC
Confidence               7777777776  99998853

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=1.8e-21  Score=147.10  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+|+.+|+.+.....       .   ..+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||
T Consensus        80 ~~~~~~tv~~~l~~~~~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE  149 (195)
T PRK13541         80 GLKLEMTVFENLKFWSEIY-------N---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE  149 (195)
T ss_pred             CCCccCCHHHHHHHHHHhc-------c---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            4567799999998643111       1   12356778999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~  126 (137)
                      ||+|||+.++..+.+.+.     +.+|+++||..+.+..
T Consensus       150 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~  188 (195)
T PRK13541        150 VETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS  188 (195)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence            999999999998887543     6799997776665544

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.8e-21  Score=158.89  Aligned_cols=116  Identities=20%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +...|+++|+.++....   .....+ ...+.+.++++.+++.    ...++++.+||||||||++|||||+.+|+||||
T Consensus       174 ~~~~ti~eNi~~~~~~~---~~~~~~-~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL  249 (329)
T PRK14257        174 PFEMSIFDNVAYGPRNN---GINDRK-ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM  249 (329)
T ss_pred             cCCCcHHHHHHhHHHhc---CCChHH-HHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            44689999998753211   000011 0233467788888874    356789999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.+...+.+.+.    +.||++   .||++.++..  |+++++.+
T Consensus       250 DEPts~LD~~~~~~i~~~i~~l~~~~Tii~---iTH~l~~i~~~~Driivl~~  299 (329)
T PRK14257        250 DEPTSALDPIATAKIEELILELKKKYSIII---VTHSMAQAQRISDETVFFYQ  299 (329)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999998877544    569999   7778887766  99998853

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=153.31  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....  .......  ...++.++++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus       111 ~~~~-~tv~eni~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  185 (267)
T PRK14237        111 NPFA-KSIYENITFALERA--GVKDKKV--LDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDIL  185 (267)
T ss_pred             cccc-ccHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3454 69999998753211  0001111  345678889999985    4568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+.+.+.    +.+|++   .+|++..+..  |++++|.+
T Consensus       186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~  237 (267)
T PRK14237        186 LMDEPASALDPISTMQLEETMFELKKNYTIII---VTHNMQQAARASDYTAFFYL  237 (267)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhcCEEEEEEC
Confidence            9999999999999998887544    568999   5666666654  88888753

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.6e-21  Score=152.77  Aligned_cols=111  Identities=24%  Similarity=0.309  Sum_probs=87.8

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+|+++|+.++.....  .  ...  ...++.++++.+++..    ..++++.+|||||+||++|||||+++|++|||||
T Consensus       102 ~~tv~enl~~~~~~~~--~--~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  175 (261)
T PRK14263        102 SMSIFDNVAFGLRLNR--Y--KGD--LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE  175 (261)
T ss_pred             cccHHHHHHHHHhhcC--c--hHH--HHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            6999999987642211  0  011  3456788999999854    3467889999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||+.++..+++.+.    +.+|++   .+|++..+..  |+++++.
T Consensus       176 PtsgLD~~~~~~l~~~l~~~~~~~tii~---isH~~~~i~~~~d~v~~l~  222 (261)
T PRK14263        176 PCSALDPIATRRVEELMVELKKDYTIAL---VTHNMQQAIRVADTTAFFS  222 (261)
T ss_pred             CCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEe
Confidence            999999999998888554    568889   5666666655  9999884

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=154.23  Aligned_cols=117  Identities=25%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++.....  .....+  ...++.++++.+|+..    ..++.+.+||||||||++|||||+.+|++|
T Consensus       111 ~l~~-~tv~eni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~ll  185 (276)
T PRK14271        111 NPFP-MSIMDNVLAGVRAHK--LVPRKE--FRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVL  185 (276)
T ss_pred             ccCC-ccHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3455 899999987532110  001111  3345678899999864    357889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+||+.++..  |++++|.+
T Consensus       186 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---vsH~~~~~~~~~dri~~l~~  237 (276)
T PRK14271        186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVII---VTHNLAQAARISDRAALFFD  237 (276)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888554    468999   6667776655  88888754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.86  E-value=1.5e-21  Score=150.23  Aligned_cols=87  Identities=21%  Similarity=0.319  Sum_probs=70.9

Q ss_pred             HHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccc
Q psy317           49 EILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQ  122 (137)
Q Consensus        49 ~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~  122 (137)
                      ++++.+  |+....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+.    +.+|+++||..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~  199 (229)
T cd03254         120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS  199 (229)
T ss_pred             HHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            444444  56666677889999999999999999999999999999999999999998887554    568999777666


Q ss_pred             hhhhhhcCceEEecC
Q psy317          123 NLQQTIRNEVCLISD  137 (137)
Q Consensus       123 ~~~~~~~~~~~~~~~  137 (137)
                      ++..  .|++++|++
T Consensus       200 ~~~~--~d~i~~l~~  212 (229)
T cd03254         200 TIKN--ADKILVLDD  212 (229)
T ss_pred             HHhh--CCEEEEEeC
Confidence            6532  489988864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=151.69  Aligned_cols=117  Identities=23%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++...+.  ......  ..+++.++++.+++.    ...++++..||||||||++|||||+.+|+++
T Consensus        97 ~~~~-~tv~eni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  171 (253)
T PRK14261         97 NPFP-KSIYENVAYGPRIHG--EKNKKT--LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVI  171 (253)
T ss_pred             ccCc-ccHHHHHHhhHHhcC--CCCHHH--HHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3555 599999987642211  000011  345677888888874    3468899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+.+.+.    +.||++   .+|++.++..  |++++|.+
T Consensus       172 lLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii---~sh~~~~~~~~~d~v~~l~~  223 (253)
T PRK14261        172 LMDEPCSALDPIATAKIEDLIEDLKKEYTVII---VTHNMQQAARVSDYTGFMYL  223 (253)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhhCceEEE---EEcCHHHHHhhCCEEEEEEC
Confidence            9999999999999998877554    468999   5666666644  88888754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.86  E-value=1e-21  Score=166.52  Aligned_cols=91  Identities=14%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG  118 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~  118 (137)
                      .+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.+.     |.||++  
T Consensus       113 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii--  190 (490)
T PRK10938        113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL--  190 (490)
T ss_pred             HHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE--
Confidence            3567889999999988999999999999999999999999999999999999999999998888654     569999  


Q ss_pred             cccchhhhhhc--CceEEecC
Q psy317          119 NRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~  137 (137)
                       .+||+..+..  |++++|.+
T Consensus       191 -~tH~~~~~~~~~d~v~~l~~  210 (490)
T PRK10938        191 -VLNRFDEIPDFVQFAGVLAD  210 (490)
T ss_pred             -EeCCHHHHHhhCCEEEEEEC
Confidence             6677877766  99998864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=2.7e-21  Score=146.65  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.++...    .    .  ....+.++++.+++.+..++++..||||||||++||||++.+|++||||
T Consensus        83 ~~~~~~~tv~~~~~~~~~~----~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD  152 (200)
T PRK13540         83 SGINPYLTLRENCLYDIHF----S----P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD  152 (200)
T ss_pred             cccCcCCCHHHHHHHHHhc----C----c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3466789999999865211    0    1  1236778999999988888999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchh
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNL  124 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~  124 (137)
                      |||+|||+.++..+++.+.     +.+|+++||..+-+
T Consensus       153 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~  190 (200)
T PRK13540        153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL  190 (200)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence            9999999999998888554     67999966654433

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.86  E-value=3.7e-21  Score=152.30  Aligned_cols=116  Identities=22%  Similarity=0.271  Sum_probs=88.8

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++..|+.+|+.+..... . ......  ...++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||
T Consensus       102 ~~~~~t~~~~l~~~~~~~-~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE  177 (268)
T PRK10419        102 VNPRKTVREIIREPLRHL-L-SLDKAE--RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE  177 (268)
T ss_pred             cCCCCCHHHHHHHHHHhh-c-cCCHHH--HHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence            556789999986542110 0 000111  334688999999997 57899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||+.++..+.+.+.      +.||++   .+|+...+..  |++++|.
T Consensus       178 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii---vsH~~~~i~~~~d~i~~l~  226 (268)
T PRK10419        178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLF---ITHDLRLVERFCQRVMVMD  226 (268)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHcCcEEEE---EECCHHHHHHhCCEEEEEE
Confidence            999999999888777443      679999   5566666554  8888775

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.86  E-value=2.3e-21  Score=149.73  Aligned_cols=120  Identities=19%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .++ ..|+.+|+.++.......... .. .....+.+.++.+  ++....++++..||||||||++|||||+.+|++|||
T Consensus        85 ~~~-~~tv~~nl~~~~~~~~~~~~~-~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llll  161 (236)
T cd03253          85 VLF-NDTIGYNIRYGRPDATDEEVI-EA-AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLL  161 (236)
T ss_pred             hhh-cchHHHHHhhcCCCCCHHHHH-HH-HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            344 579999998753111000000 00 0001223444544  566667778899999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.    +.+|+++||..+.+..  .|++++|.+
T Consensus       162 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l~~  210 (236)
T cd03253         162 DEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVLKD  210 (236)
T ss_pred             eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEEEC
Confidence            99999999999998877543    6799997777666643  489888864

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=152.94  Aligned_cols=113  Identities=21%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      +++ .|+.+|+.++.....   .. ..  ..+.+.+.++.+++.    +..++++..||||||||++|||||+.+|++||
T Consensus       112 l~~-~tv~~nl~~~~~~~~---~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll  184 (274)
T PRK14265        112 PFP-KSIYENIAFAPRANG---YK-GN--LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLL  184 (274)
T ss_pred             ccc-ccHHHHHHhHHHhcC---ch-HH--HHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence            444 599999987532110   00 11  234456678888863    45688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           90 FDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++++|.
T Consensus       185 LDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        185 MDEPCSALDPISTRQVEELCLELKEQYTIIM---VTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence            999999999999998888655    568999   7777777766  9999884

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.4e-21  Score=152.09  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++....   ... ..  ..+++.++++.+++.    ...++++.+||||||||++|||||+.+|++|
T Consensus       101 ~~~~-~tv~enl~~~~~~~---~~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  173 (264)
T PRK14243        101 NPFP-KSIYDNIAYGARIN---GYK-GD--MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVI  173 (264)
T ss_pred             cccc-ccHHHHHHhhhhhc---Ccc-hH--HHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3454 59999998753211   100 11  234566778888874    3567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++.++..  |+|++|.
T Consensus       174 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~---vtH~~~~~~~~~d~v~~l~  224 (264)
T PRK14243        174 LMDEPCSALDPISTLRIEELMHELKEQYTIII---VTHNMQQAARVSDMTAFFN  224 (264)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEe
Confidence            9999999999999998888654    468999   5666766665  8998885

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.86  E-value=2e-21  Score=150.46  Aligned_cols=117  Identities=22%  Similarity=0.275  Sum_probs=83.7

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ..|+++|+.++.........  ........+.++++.+  ++....++++.+||||||||++|||||+.+|++|||||||
T Consensus        90 ~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~  167 (238)
T cd03249          90 DGTIAENIRYGKPDATDEEV--EEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT  167 (238)
T ss_pred             hhhHHHHhhccCCCCCHHHH--HHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            46999999865321100000  0000001233444444  6666678889999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           95 SPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||+.++..+++.+.    +.+|+++||..+.+.  ..|++++|++
T Consensus       168 ~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~--~~d~v~~l~~  212 (238)
T cd03249         168 SALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR--NADLIAVLQN  212 (238)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh--hCCEEEEEEC
Confidence            9999999998888653    679999777766664  3499998864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3e-21  Score=153.01  Aligned_cols=117  Identities=23%  Similarity=0.283  Sum_probs=87.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC----CcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL----QEHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL----~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+.+|+.++....  .. . ........+.+.++.+++    .+..++++..||||||||++|||||+.+|++|
T Consensus       115 ~~~~-~tv~eni~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~ll  189 (271)
T PRK14238        115 NPFP-KSIYDNVTYGPKIH--GI-K-DKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI  189 (271)
T ss_pred             cccc-ccHHHHHHHHHHhc--CC-C-cHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3454 59999998753211  10 0 011123456677877754    44568899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++++|.+
T Consensus       190 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~i~~~~d~i~~l~~  241 (271)
T PRK14238        190 LMDEPTSALDPISTLKVEELVQELKKDYSIII---VTHNMQQAARISDKTAFFLN  241 (271)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE---EEcCHHHHHHhCCEEEEEEC
Confidence            9999999999999998887544    568999   5666666554  89988864

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=150.19  Aligned_cols=116  Identities=23%  Similarity=0.242  Sum_probs=87.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+|+ .|+.+|+.++....  .......  ..+++.++++.+|+.    ...++++..||+|||||++|||||+.+|++|
T Consensus        94 ~~~~-~t~~~nl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  168 (250)
T PRK14266         94 NPFP-KSIFDNVAYGLRIH--GEDDEDF--IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI  168 (250)
T ss_pred             ccCc-chHHHHHHhHHhhc--CCCCHHH--HHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            4555 59999998653211  0000111  345778889999884    3468889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++..+..  +++++++
T Consensus       169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii---~sh~~~~~~~~~~~i~~l~  219 (250)
T PRK14266        169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVI---VTHNMQQATRVSKYTSFFL  219 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EECCHHHHHhhcCEEEEEE
Confidence            9999999999999998888554    568999   5556655555  7777664

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.86  E-value=2.8e-21  Score=148.47  Aligned_cols=115  Identities=14%  Similarity=0.025  Sum_probs=88.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+|+.+....+.  .    .  ..+....+.+.+++....+++++.||+|||||++||+||+.+|+++|||
T Consensus        58 ~~l~~~ltv~enl~~~~~~~~--~----~--~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD  129 (213)
T PRK15177         58 SFILPGLTGEENARMMASLYG--L----D--GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD  129 (213)
T ss_pred             cccCCcCcHHHHHHHHHHHcC--C----C--HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            457888999999987543211  1    1  1112233456678888889999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+++|+.++..+.+.+    .+.++++   .+|++..+..  |++++|.+
T Consensus       130 EP~~~lD~~~~~~~~~~l~~~~~~~~ii~---vsH~~~~~~~~~d~i~~l~~  178 (213)
T PRK15177        130 GKLYTGDNATQLRMQAALACQLQQKGLIV---LTHNPRLIKEHCHAFGVLLH  178 (213)
T ss_pred             CCCccCCHHHHHHHHHHHHHHhhCCcEEE---EECCHHHHHHhcCeeEEEEC
Confidence            999999999998777743    3668889   5666666653  88888753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.85  E-value=3.4e-21  Score=147.50  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHHHHHhc
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIALELVN   83 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IArAL~~   83 (137)
                      +...|+.+|+.+....            ..+++.+.++.+++.+           ..++++..||+|||||++|||||+.
T Consensus        89 l~~~tv~enl~~~~~~------------~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~  156 (221)
T cd03244          89 LFSGTIRSNLDPFGEY------------SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR  156 (221)
T ss_pred             cccchHHHHhCcCCCC------------CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence            3346999998643110            0122334444444443           3457899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|+++||||||+|||+.++..+++.+.    +.+|+++||..+.+..  .|++++|.+
T Consensus       157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l~~  212 (221)
T cd03244         157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVLDK  212 (221)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEEEC
Confidence            999999999999999999998888655    5689997776666543  389888864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.85  E-value=3.1e-21  Score=151.80  Aligned_cols=89  Identities=24%  Similarity=0.311  Sum_probs=78.2

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeec
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTG  118 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~  118 (137)
                      +++.++++.+|+.+..++++..||||||||++||+||+.+|++|||||||+|||+.++..+++.+.      +.||++  
T Consensus        99 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii--  176 (251)
T PRK09544         99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM--  176 (251)
T ss_pred             HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE--
Confidence            456789999999998999999999999999999999999999999999999999999998887542      679999  


Q ss_pred             cccchhhhhhc--CceEEec
Q psy317          119 NRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~  136 (137)
                       .+||+.++..  |+++++.
T Consensus       177 -vsH~~~~i~~~~d~i~~l~  195 (251)
T PRK09544        177 -VSHDLHLVMAKTDEVLCLN  195 (251)
T ss_pred             -EecCHHHHHHhCCEEEEEC
Confidence             6677777655  8888875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=4.2e-21  Score=179.71  Aligned_cols=124  Identities=20%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC----CCCHHHHHHHHHHHHHhcCCC-
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS----NLSGGQKKRLSIALELVNNPP-   86 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~----~LSgGqkqrv~IArAL~~~P~-   86 (137)
                      +.+++.+||+||+.++..++........+  ..++++++++.+|+.+..++.++    .||||||||++||++|+.+|+ 
T Consensus       845 ~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~--~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~  922 (1394)
T TIGR00956       845 DLHLPTSTVRESLRFSAYLRQPKSVSKSE--KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL  922 (1394)
T ss_pred             ccCCCCCCHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence            35688899999999875433111111112  44678999999999999998887    799999999999999999997 


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||||||+|||+.++..+++.++     |.||++++|..+..-...-|++++|++
T Consensus       923 iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~  978 (1394)
T TIGR00956       923 LLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQK  978 (1394)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcC
Confidence            999999999999999998888554     679999666555432233488888863

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.1e-21  Score=162.61  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      ..++.++++.+|+.+.. ++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.+.  +.||++   .
T Consensus       132 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiii---v  208 (530)
T PRK15064        132 EARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII---I  208 (530)
T ss_pred             HHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEE---E
Confidence            35678899999997644 57899999999999999999999999999999999999999999988766  679999   6


Q ss_pred             cchhhhhhc--CceEEecC
Q psy317          121 TQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~~  137 (137)
                      +||+..+..  |++++|.+
T Consensus       209 sHd~~~~~~~~d~i~~l~~  227 (530)
T PRK15064        209 SHDRHFLNSVCTHMADLDY  227 (530)
T ss_pred             eCCHHHHHhhcceEEEEeC
Confidence            677776655  88888864

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=5.4e-21  Score=179.49  Aligned_cols=123  Identities=27%  Similarity=0.320  Sum_probs=95.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccC-----CCCCHHHHHHHHHHHHHhcCCC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMT-----SNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~-----~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      +.+++.+||+|++.++..++........+  ..++++++++.+||.+..++++     ..||||||||++||++|+.+|+
T Consensus       962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~--~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~ 1039 (1470)
T PLN03140        962 DIHSPQVTVRESLIYSAFLRLPKEVSKEE--KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039 (1470)
T ss_pred             cccCCCCcHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC
Confidence            45788899999999875332111111112  3457899999999998888886     5899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      +|||||||+|||+.++..+++.++     |.||++++|..+..-...-|++++|+
T Consensus      1040 lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140       1040 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence            999999999999999999988654     67999966665522122348888886

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.85  E-value=6.3e-21  Score=164.53  Aligned_cols=120  Identities=22%  Similarity=0.264  Sum_probs=85.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      .|+...+.+-|++||+.++..    .. +.++  ..+     .+.+.++.+  |++........+||||||||++|||||
T Consensus       428 v~Q~~~LF~~TI~eNI~~g~~----~~-~~ee--i~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl  500 (588)
T PRK11174        428 VGQNPQLPHGTLRDNVLLGNP----DA-SDEQ--LQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL  500 (588)
T ss_pred             ecCCCcCCCcCHHHHhhcCCC----CC-CHHH--HHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence            456666677899999998631    00 0001  111     122334443  455455566788999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +++|+|||||||||+||+.+...+.+.+.    +.|+++.||+.+-+..  .|+++++.+
T Consensus       501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~--aD~Iivl~~  558 (588)
T PRK11174        501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ--WDQIWVMQD  558 (588)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh--CCEEEEEeC
Confidence            99999999999999999999998887553    6799996666654432  388888754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.4e-21  Score=163.45  Aligned_cols=122  Identities=20%  Similarity=0.265  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++|++||.||+.++........+ -..+...+++.++|+.+|+....+.++++||.||||.|+|||||..++++||||
T Consensus        92 l~L~p~LsVaeNifLgre~~~~~g~-id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD  170 (500)
T COG1129          92 LSLVPNLSVAENIFLGREPTRRFGL-IDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD  170 (500)
T ss_pred             hhccCCccHHHHhhcccccccCCCc-cCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            4589999999999988654321110 111225678899999999965589999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|+..+.+.+++..+     |.+|+|   .+|.|.+...  ||+.++.|
T Consensus       171 EPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~---ISHrl~Ei~~i~DritVlRD  220 (500)
T COG1129         171 EPTAALTVKETERLFDLIRRLKAQGVAIIY---ISHRLDEVFEIADRITVLRD  220 (500)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EcCcHHHHHHhcCEEEEEeC
Confidence            9999999999999888544     889999   6667777777  99999876

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.85  E-value=5.9e-21  Score=164.38  Aligned_cols=113  Identities=16%  Similarity=0.229  Sum_probs=90.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++.+|+.+|+.++....   ...  .  ...++.++++.+|+.. ..++++++||||||||++|||||+.+|++|||||
T Consensus       397 ~~~~~tv~e~l~~~~~~~---~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE  469 (552)
T TIGR03719       397 LDPNKTVWEEISGGLDII---QLG--K--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE  469 (552)
T ss_pred             cCCCCcHHHHHHhhcccc---ccC--c--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            677899999998753211   000  1  1224557899999974 5799999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhhc--CceEEec
Q psy317           93 PTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||+.++..+++.+..  .+|++   .+||+.++..  |++++|.
T Consensus       470 Pt~~LD~~~~~~l~~~l~~~~~~vii---vsHd~~~~~~~~d~i~~l~  514 (552)
T TIGR03719       470 PTNDLDVETLRALEEALLEFAGCAVV---ISHDRWFLDRIATHILAFE  514 (552)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCeEEE---EeCCHHHHHHhCCEEEEEE
Confidence            9999999999999987663  48888   6667776655  8988875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.1e-21  Score=150.80  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG  118 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~  118 (137)
                      .+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+.     |.+|++  
T Consensus       120 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii--  197 (272)
T PRK15056        120 RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV--  197 (272)
T ss_pred             HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE--
Confidence            4467789999999988999999999999999999999999999999999999999999998888553     679999  


Q ss_pred             cccchhhhhhc--CceEEe
Q psy317          119 NRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~  135 (137)
                       .+||+.++..  |+++++
T Consensus       198 -vsH~~~~~~~~~d~v~~~  215 (272)
T PRK15056        198 -STHNLGSVTEFCDYTVMV  215 (272)
T ss_pred             -EeCCHHHHHHhCCEEEEE
Confidence             5556655544  777654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.85  E-value=7.4e-21  Score=163.98  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=90.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+++|+.++.....   .  ..  ....+.++++.+|+.. ..++++++||||||||++|||||+.+|++||||
T Consensus       398 ~~~~~~tv~e~l~~~~~~~~---~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  470 (556)
T PRK11819        398 ALDPNKTVWEEISGGLDIIK---V--GN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD  470 (556)
T ss_pred             hcCCCCCHHHHHHhhccccc---c--cc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            46778999999987532110   0  01  1223457899999964 579999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+++.+..  .+|++   .+||+.++..  |++++|.
T Consensus       471 EPt~~LD~~~~~~l~~~l~~~~~tvi~---vtHd~~~~~~~~d~i~~l~  516 (556)
T PRK11819        471 EPTNDLDVETLRALEEALLEFPGCAVV---ISHDRWFLDRIATHILAFE  516 (556)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCeEEE---EECCHHHHHHhCCEEEEEE
Confidence            99999999999999987663  37888   6777777665  8998885

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.85  E-value=5.5e-21  Score=142.98  Aligned_cols=86  Identities=33%  Similarity=0.470  Sum_probs=73.3

Q ss_pred             HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccc
Q psy317           49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQ  122 (137)
Q Consensus        49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~  122 (137)
                      ++++.+|+.+..++++..||||||||++|||||+.+|+++||||||+|||+.++..+++.+.      +.+|++   .+|
T Consensus        80 q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii---~sh  156 (180)
T cd03214          80 QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM---VLH  156 (180)
T ss_pred             HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeC
Confidence            47899999988899999999999999999999999999999999999999999998877443      569999   555


Q ss_pred             hhhhhhc--CceEEecC
Q psy317          123 NLQQTIR--NEVCLISD  137 (137)
Q Consensus       123 ~~~~~~~--~~~~~~~~  137 (137)
                      ++..+..  |+++++.+
T Consensus       157 ~~~~~~~~~d~~~~l~~  173 (180)
T cd03214         157 DLNLAARYADRVILLKD  173 (180)
T ss_pred             CHHHHHHhCCEEEEEEC
Confidence            5555543  88888753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.85  E-value=1.5e-20  Score=162.08  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT  121 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~  121 (137)
                      .+++.++++.+|+.. .++++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+.  +.||++   .+
T Consensus       142 ~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tvii---is  217 (556)
T PRK11819        142 DSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVA---VT  217 (556)
T ss_pred             HHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEE---Ee
Confidence            356788999999964 789999999999999999999999999999999999999999999888766  358999   66


Q ss_pred             chhhhhhc--CceEEecC
Q psy317          122 QNLQQTIR--NEVCLISD  137 (137)
Q Consensus       122 ~~~~~~~~--~~~~~~~~  137 (137)
                      ||+.++..  |++++|.+
T Consensus       218 Hd~~~~~~~~d~i~~l~~  235 (556)
T PRK11819        218 HDRYFLDNVAGWILELDR  235 (556)
T ss_pred             CCHHHHHhhcCeEEEEeC
Confidence            67776665  88888753

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=148.39  Aligned_cols=117  Identities=26%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .+++ .|+++|+.++....   ...... ..++++.+.++.+++.    +..++++.+||||||||++|||||+.+|+++
T Consensus       109 ~~~~-~tv~eni~~~~~~~---~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  183 (265)
T PRK14252        109 NPFP-KSIFENVAYGLRIR---GVKRRS-ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEIL  183 (265)
T ss_pred             cCCc-chHHHHHHhHHHHc---CCChHH-HHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3455 49999998753211   000011 0235677788888774    4567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+.    +.||++   .+|++..+..  |++++|.+
T Consensus       184 llDEPt~gLD~~~~~~l~~~l~~l~~~~tiii---vth~~~~~~~~~d~i~~l~~  235 (265)
T PRK14252        184 LFDEPTSALDPIATASIEELISDLKNKVTILI---VTHNMQQAARVSDYTAYMYM  235 (265)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999998888554    468999   6667776654  88888753

>KOG0061|consensus

Probab=99.84  E-value=3.8e-21  Score=167.99  Aligned_cols=125  Identities=27%  Similarity=0.357  Sum_probs=98.5

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC-----CCCHHHHHHHHHHHHHhcC
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS-----NLSGGQKKRLSIALELVNN   84 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~-----~LSgGqkqrv~IArAL~~~   84 (137)
                      -++.+++.+||+|++.+...++.+...+..+  ..++++++++.+|+.+.+|+.++     .+||||||||+||.-|+++
T Consensus       111 QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~--k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~  188 (613)
T KOG0061|consen  111 QDDVLLPTLTVRETLRFSALLRLPSSLSKEE--KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTD  188 (613)
T ss_pred             ccccccccccHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcC
Confidence            3566899999999999987665433222233  67899999999999999999886     5999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |.+|+|||||+|||..+..++++.++     |.||++|.|-+-===.-+=|++++||
T Consensus       189 P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs  245 (613)
T KOG0061|consen  189 PSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS  245 (613)
T ss_pred             CCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence            99999999999999999999988655     67888877765311111116666654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=161.20  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=90.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      +++.+|+.+|+.+..     ..   ..  .++++.++++.+|+. ...++++++||||||||++|||||+.+|++|||||
T Consensus       395 ~~~~~t~~~~~~~~~-----~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE  464 (530)
T PRK15064        395 FENDLTLFDWMSQWR-----QE---GD--DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE  464 (530)
T ss_pred             CCCCCcHHHHHHHhc-----cC---Cc--cHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            455689999886321     00   11  235678899999994 67899999999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317           93 PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||+.++..+++.+.  +.||++   .+||+.++..  |++++|.+
T Consensus       465 Pt~~LD~~~~~~l~~~l~~~~~tvi~---vsHd~~~~~~~~d~i~~l~~  510 (530)
T PRK15064        465 PTNHMDMESIESLNMALEKYEGTLIF---VSHDREFVSSLATRIIEITP  510 (530)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999988766  458999   6777777765  88888753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.84  E-value=7.7e-21  Score=161.13  Aligned_cols=94  Identities=20%  Similarity=0.294  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----c-ceeee
Q psy317           44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----D-TKVDY  116 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~-~~v~~  116 (137)
                      .+++.++++.+|+.. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+.     + .+|++
T Consensus       378 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii  457 (490)
T PRK10938        378 QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF  457 (490)
T ss_pred             HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            456889999999987 8899999999999999999999999999999999999999999999988543     3 36999


Q ss_pred             eccccchhhhhhcCceEEecC
Q psy317          117 TGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +||..+.+.....++++++.+
T Consensus       458 vsHd~~~~~~~~~d~v~~l~~  478 (490)
T PRK10938        458 VSHHAEDAPACITHRLEFVPD  478 (490)
T ss_pred             EecchhhhhhhhheeEEEecC
Confidence            555555554434588888753

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.84  E-value=1.9e-20  Score=145.62  Aligned_cols=93  Identities=19%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317           44 SCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY  116 (137)
Q Consensus        44 ~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~  116 (137)
                      .+++.++++.+++. +..++++. .||||||||++|||||+.+|++|||||||+|||+.++..+.+.+.     +.||++
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii  200 (248)
T PRK09580        121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII  200 (248)
T ss_pred             HHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45677899999995 45677775 799999999999999999999999999999999999998887432     679999


Q ss_pred             eccccchhhhhhcCceEEec
Q psy317          117 TGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~  136 (137)
                      +||..+.+.....|+++++.
T Consensus       201 ~sH~~~~~~~~~~d~i~~l~  220 (248)
T PRK09580        201 VTHYQRILDYIKPDYVHVLY  220 (248)
T ss_pred             EeCCHHHHHhhhCCEEEEEE
Confidence            55554444433247787764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.84  E-value=2.2e-20  Score=141.70  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHH--HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSC--FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      ...|+++|+.+..... ....  ..  ..+  .+.+.+..+  |+....++++..||+|||||++|||||+.+|+++|||
T Consensus        78 ~~~t~~enl~~~~~~~-~~~~--~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD  152 (204)
T cd03250          78 QNGTIRENILFGKPFD-EERY--EK--VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD  152 (204)
T ss_pred             ccCcHHHHhccCCCcC-HHHH--HH--HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3679999998753211 0000  00  000  112223332  4455567788999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHh-h-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYER-K-----VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~-~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+|||+.+++.+++. +     .+.||+++||..+.+..  .|++++|.+
T Consensus       153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~l~~  202 (204)
T cd03250         153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDN  202 (204)
T ss_pred             CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEEEeC
Confidence            99999999998877662 2     25799997777666654  589988864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.5e-20  Score=149.47  Aligned_cols=119  Identities=23%  Similarity=0.257  Sum_probs=87.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhH-------Hhhhh-cchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHH
Q psy317           14 MDPKKTPLTRMQISNGMMVL-------AAMFN-QSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~-------~~~~~-~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      +++ .|+++|+.++......       ..+.. ......+++.++++.+++.    ...++++.+||||||||++|||||
T Consensus       137 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL  215 (305)
T PRK14264        137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL  215 (305)
T ss_pred             ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence            454 5999999875321100       00000 0111245678899999884    456888999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--Cce-EEec
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEV-CLIS  136 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~-~~~~  136 (137)
                      +++|++|||||||+|||+.++..+++.+.    +.+|++   .+||+.++..  |++ ++|.
T Consensus       216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiii---vtH~~~~i~~~~d~i~~~l~  274 (305)
T PRK14264        216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV---VTHNMQQAARISDQTAVFLT  274 (305)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhcCEEEEEec
Confidence            99999999999999999999998888654    458899   6667777655  875 4554

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.83  E-value=1.9e-20  Score=149.60  Aligned_cols=111  Identities=16%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC-----------CCHHHHHHHHHHHH
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN-----------LSGGQKKRLSIALE   80 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~-----------LSgGqkqrv~IArA   80 (137)
                      +.+|+ .|+++|+....     .     .  ..+++.+.++.+|+....++++..           ||||||||++||||
T Consensus        86 ~~lf~-~tv~~nl~~~~-----~-----~--~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa  152 (275)
T cd03289          86 VFIFS-GTFRKNLDPYG-----K-----W--SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS  152 (275)
T ss_pred             cccch-hhHHHHhhhcc-----C-----C--CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence            33454 59999995321     0     1  123456778899998888888876           99999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           81 LVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+.+|+||||||||++||+.++..+.+.+.    +.||+++||..+.+..  .||++++.+
T Consensus       153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~--~dri~vl~~  211 (275)
T cd03289         153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE--CQRFLVIEE  211 (275)
T ss_pred             HhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh--CCEEEEecC
Confidence            999999999999999999999987777554    5699996655544332  399998864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.83  E-value=4.4e-20  Score=158.97  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccc
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQ  122 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~  122 (137)
                      .++.++++.+|+.. .++++++||||||||++|||||+.+|++|||||||++||+.++..+.+.+.  +.+|++   .+|
T Consensus       141 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIi---isH  216 (552)
T TIGR03719       141 RKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVA---VTH  216 (552)
T ss_pred             HHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEE---EeC
Confidence            35677888888854 688999999999999999999999999999999999999999999888765  358999   666


Q ss_pred             hhhhhhc--CceEEecC
Q psy317          123 NLQQTIR--NEVCLISD  137 (137)
Q Consensus       123 ~~~~~~~--~~~~~~~~  137 (137)
                      |+.++..  |++++|.+
T Consensus       217 d~~~~~~~~d~v~~l~~  233 (552)
T TIGR03719       217 DRYFLDNVAGWILELDR  233 (552)
T ss_pred             CHHHHHhhcCeEEEEEC
Confidence            6666655  88888753

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.83  E-value=3.5e-20  Score=162.55  Aligned_cols=121  Identities=24%  Similarity=0.241  Sum_probs=95.1

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .++.+++.+|+.+|+.+.....   .....+  ..+++.++++.+|+.+..++++..||+||+||++|||||+.+|++||
T Consensus        93 q~~~l~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLl  167 (648)
T PRK10535         93 QRYHLLSHLTAAQNVEVPAVYA---GLERKQ--RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL  167 (648)
T ss_pred             CCcccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3456778899999998753211   111112  45578899999999998999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||||+|||+.+++.+.+.+.     +.+++++||..+.+..  .||++++.+
T Consensus       168 lDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~--~d~i~~l~~  218 (648)
T PRK10535        168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ--AERVIEIRD  218 (648)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHh--CCEEEEEEC
Confidence            999999999999998877543     6799996666554321  389988864

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.83  E-value=3.1e-20  Score=160.51  Aligned_cols=116  Identities=22%  Similarity=0.332  Sum_probs=89.8

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCc----------cCCCCCHHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTT----------MTSNLSGGQKKRLSIA   78 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~----------~~~~LSgGqkqrv~IA   78 (137)
                      .++...+.+-|++||+.++..    .     .  .++++.+.++.+|+.+..++          ...+||||||||++||
T Consensus       419 v~Q~~~lf~~ti~~Ni~~~~~----~-----~--~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA  487 (574)
T PRK11160        419 VSQRVHLFSATLRDNLLLAAP----N-----A--SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA  487 (574)
T ss_pred             EcccchhhcccHHHHhhcCCC----c-----c--CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence            345555566899999987531    1     1  23456677888887665443          5677999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||++++|++|||||||++||+.+...+.+.+.    +.|+++.||+.+.+..  .|+++++.+
T Consensus       488 Rall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~--~d~i~~l~~  548 (574)
T PRK11160        488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ--FDRICVMDN  548 (574)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh--CCEEEEEeC
Confidence            99999999999999999999999998888654    6699997777766543  388888754

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.83  E-value=4.4e-20  Score=141.37  Aligned_cols=76  Identities=25%  Similarity=0.306  Sum_probs=63.4

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH-----hhc--cceeeeeccccchhhhhhcCce
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE-----RKV--DTKVDYTGNRTQNLQQTIRNEV  132 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-----~~~--~~~v~~~~~~~~~~~~~~~~~~  132 (137)
                      .++++..||||||||++|||||+.+|++|||||||+|||+.++..+++     .+.  +.||+++||..+.+..  .|++
T Consensus       134 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~--~d~i  211 (218)
T cd03290         134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH--ADWI  211 (218)
T ss_pred             cccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh--CCEE
Confidence            456789999999999999999999999999999999999999987665     222  5799997777766532  4898


Q ss_pred             EEecC
Q psy317          133 CLISD  137 (137)
Q Consensus       133 ~~~~~  137 (137)
                      ++|.+
T Consensus       212 ~~l~~  216 (218)
T cd03290         212 IAMKD  216 (218)
T ss_pred             EEecC
Confidence            88764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=5.9e-20  Score=146.08  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=85.0

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN---PPIMFF   90 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~---P~iLlL   90 (137)
                      +.++|+.|++.+...+.           ...++.++|+.+||.. ..++++.+|||||+||+.||++|+.+   |+++||
T Consensus       128 v~~ltv~e~~~~~~~~~-----------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllL  196 (261)
T cd03271         128 VLDMTVEEALEFFENIP-----------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYIL  196 (261)
T ss_pred             HhcCCHHHHHHHHHhhh-----------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            45788888887653211           1235667999999987 57999999999999999999999996   799999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      ||||+|||+..+..+++.+.     |.||++++|..+.+.  ..|+++.|
T Consensus       197 DEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~--~aD~ii~L  244 (261)
T cd03271         197 DEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK--CADWIIDL  244 (261)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence            99999999999998887543     679999555544432  13888887

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=160.53  Aligned_cols=117  Identities=19%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|+++|+.++..    ..    .  .++++.+.++.+|+.           ........+||||||||++|
T Consensus       422 v~Q~~~lf~~Ti~~Ni~~~~~----~~----~--~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L  491 (582)
T PRK11176        422 VSQNVHLFNDTIANNIAYART----EQ----Y--SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI  491 (582)
T ss_pred             EccCceeecchHHHHHhcCCC----CC----C--CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence            456666667899999987531    00    0  123344455555543           23334457799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||.++|++||||||||+||+.+...+++.+.    +.|+++.||+.+-+..  .|++++|++
T Consensus       492 ARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~--~D~Ii~l~~  553 (582)
T PRK11176        492 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK--ADEILVVED  553 (582)
T ss_pred             HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence            999999999999999999999999998888654    5699996666644332  388888864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.83  E-value=3.2e-20  Score=163.01  Aligned_cols=114  Identities=22%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IA   78 (137)
                      |+...+.+-|++||+.++..     .       .++++.+.++..|+.+.           ......+||||||||++||
T Consensus       533 ~Q~~~lf~gTI~eNi~~~~~-----~-------~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA  600 (686)
T TIGR03797       533 LQNGRLMSGSIFENIAGGAP-----L-------TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA  600 (686)
T ss_pred             ccCCccCcccHHHHHhcCCC-----C-------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            45556667899999987531     0       11234445555555432           3344578999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|++||||||||+||+.+.+.+++.+.  +.|+++.||+.+.+..  .|++++|.+
T Consensus       601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~--~D~Iivl~~  659 (686)
T TIGR03797       601 RALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN--ADRIYVLDA  659 (686)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc--CCEEEEEEC
Confidence            99999999999999999999999999998766  5799996666655433  399998864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.83  E-value=3.2e-20  Score=163.41  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|++||+.++..    ..       .++++.+.++..|           ++........+||||||||++|
T Consensus       558 v~Q~~~lf~gTi~eNi~l~~~----~~-------~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaL  626 (710)
T TIGR03796       558 VDQDIFLFEGTVRDNLTLWDP----TI-------PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI  626 (710)
T ss_pred             EecCChhhhccHHHHhhCCCC----CC-------CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHH
Confidence            355666667899999987521    00       1123333444444           3434445567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++|++||||||||+||+.+...+++.+.  +.|+++.||+.+-+..  .|++++|.+
T Consensus       627 ARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~--~D~Iivl~~  686 (710)
T TIGR03796       627 ARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD--CDEIIVLER  686 (710)
T ss_pred             HHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh--CCEEEEEeC
Confidence            999999999999999999999999999998766  6799996666654433  399998864

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=2.7e-20  Score=147.92  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317           43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD  115 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~  115 (137)
                      ..+++.++|+.+|+.. ..+++|++|||||+||+.|||||+.+|+++++|||+|+||...+.++++.+.      |.+.+
T Consensus        85 ~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~l  164 (268)
T COG4608          85 RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL  164 (268)
T ss_pred             HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEE
Confidence            4567999999999965 7899999999999999999999999999999999999999999999988655      67888


Q ss_pred             eeccccchhhhhhc--CceEEec
Q psy317          116 YTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +   .+||+..+.-  ||+.++.
T Consensus       165 F---IsHDL~vv~~isdri~VMy  184 (268)
T COG4608         165 F---ISHDLSVVRYISDRIAVMY  184 (268)
T ss_pred             E---EEEEHHhhhhhcccEEEEe
Confidence            8   8999999888  8887753

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.82  E-value=7.3e-20  Score=158.62  Aligned_cols=119  Identities=17%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-----HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-----ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-----~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~   82 (137)
                      ++...+.+.|+++|+.++..- ...    ++  ..+.     +.+.+..+  |++...+.....||||||||++|||||+
T Consensus       415 ~q~~~lf~~ti~~Ni~~~~~~-~~~----~~--~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall  487 (585)
T TIGR01192       415 FQDAGLFNRSIRENIRLGREG-ATD----EE--VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL  487 (585)
T ss_pred             ccCCccCcccHHHHHhcCCCC-CCH----HH--HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            444445568999999876310 000    01  1111     12223322  5555566778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      .+|++|||||||+|||+.+...+.+.+.    +.||++.||+.+.+..  .|++++|.+
T Consensus       488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~--~d~i~~l~~  544 (585)
T TIGR01192       488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN--ADLVLFLDQ  544 (585)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc--CCEEEEEEC
Confidence            9999999999999999999998887554    6799997777766533  488888753

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.82  E-value=7.1e-20  Score=157.11  Aligned_cols=123  Identities=19%  Similarity=0.188  Sum_probs=85.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhh-hhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           10 IWDSMDPKKTPLTRMQISNG-MMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      |+...+.+.|+++|+.++.. ... ......-  ....+.+.++.+  |++...+....+||||||||++||||++++|+
T Consensus       398 ~q~~~lf~~ti~~Ni~~~~~~~~~-~~~~~~~--~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       398 PQDVELFPGTVAENIARFGENADP-EKIIEAA--KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             cCCcccccccHHHHHhccCCCCCH-HHHHHHH--HHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            44444455699999985421 100 0000000  011234556666  66666777889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||||||+|||+.+...+++.+     .+.|+++.||+.+-+.  ..|++++|.+
T Consensus       475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~--~~d~i~~l~~  528 (544)
T TIGR01842       475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG--CVDKILVLQD  528 (544)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence            99999999999999999888744     3579999777665332  2399998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.82  E-value=5.7e-20  Score=160.78  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=90.9

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++++||.+|+.++.. .. ..   ..  ....+.+++..+++. +..+++++.||||||||++||+||+.+|++||||
T Consensus       393 ~l~~~~tv~e~l~~~~~-~~-~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD  465 (635)
T PRK11147        393 ELDPEKTVMDNLAEGKQ-EV-MV---NG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD  465 (635)
T ss_pred             ccCCCCCHHHHHHhhcc-cc-cc---cc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            46788999999986421 10 00   11  234577899999996 4679999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+.+.+.  +.||++   .+||..++..  ++++++.
T Consensus       466 EPt~~LD~~~~~~l~~~l~~~~~tvi~---vSHd~~~~~~~~d~i~~l~  511 (635)
T PRK11147        466 EPTNDLDVETLELLEELLDSYQGTVLL---VSHDRQFVDNTVTECWIFE  511 (635)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCeEEE---EECCHHHHHHhcCEEEEEe
Confidence            9999999999999888766  458999   5566666554  8888885

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.82  E-value=5.3e-20  Score=157.91  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=85.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+++-|+++|+.++..    ..    .  .++++.+.++.+|+.+.           .......||||||||++|
T Consensus       411 v~Q~~~lf~~Ti~~Ni~~~~~----~~----~--~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL  480 (571)
T TIGR02203       411 VSQDVVLFNDTIANNIAYGRT----EQ----A--DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI  480 (571)
T ss_pred             EccCcccccccHHHHHhcCCC----CC----C--CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence            456667778899999987631    00    1  12345556666665433           223346799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||++++|+++|||||||+||+.+.+.+++.+.    +.|+++.||+.+.+..  .|+|+.+.+
T Consensus       481 ARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~--~D~ii~l~~  542 (571)
T TIGR02203       481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK--ADRIVVMDD  542 (571)
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHh--CCEEEEEeC
Confidence            999999999999999999999999999987554    5699996666644322  388887753

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.82  E-value=9.9e-20  Score=138.43  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEe
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      .++++..|||||+||++|||||+.+|+++||||||+|||+.++..+++.+.    +.|++++||..+.+..  .|++++|
T Consensus       119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l  196 (207)
T cd03369         119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM  196 (207)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence            367889999999999999999999999999999999999999998888654    5789995555554432  3899888


Q ss_pred             cC
Q psy317          136 SD  137 (137)
Q Consensus       136 ~~  137 (137)
                      ++
T Consensus       197 ~~  198 (207)
T cd03369         197 DA  198 (207)
T ss_pred             EC
Confidence            64

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.82  E-value=8.1e-20  Score=137.63  Aligned_cols=88  Identities=23%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             HHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317           48 SEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN--PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN  119 (137)
Q Consensus        48 ~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~  119 (137)
                      .+.++.+++.. ..++++.+||||||||++|||||+.+  |+++||||||++||+.++..+.+.+.     |.+|+++||
T Consensus        68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH  147 (176)
T cd03238          68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH  147 (176)
T ss_pred             HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            46889999986 47899999999999999999999999  99999999999999999998887543     679999776


Q ss_pred             ccchhhhhhcCceEEecC
Q psy317          120 RTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~  137 (137)
                      ..+.+.  ..|++++|.+
T Consensus       148 ~~~~~~--~~d~i~~l~~  163 (176)
T cd03238         148 NLDVLS--SADWIIDFGP  163 (176)
T ss_pred             CHHHHH--hCCEEEEECC
Confidence            665542  2489988853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.82  E-value=2.9e-19  Score=138.52  Aligned_cols=86  Identities=21%  Similarity=0.273  Sum_probs=72.8

Q ss_pred             HHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317           48 SEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN  119 (137)
Q Consensus        48 ~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~  119 (137)
                      .++++.+|+.. ..++++.+||||||||++||+||+.+|  ++|||||||+|||+..+..+++.+.     |.+|+++||
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH  197 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH  197 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            56899999987 579999999999999999999999998  5999999999999999998887543     679999555


Q ss_pred             ccchhhhhhcCceEEe
Q psy317          120 RTQNLQQTIRNEVCLI  135 (137)
Q Consensus       120 ~~~~~~~~~~~~~~~~  135 (137)
                      ..+.+.  ..|+++++
T Consensus       198 ~~~~~~--~~d~i~~l  211 (226)
T cd03270         198 DEDTIR--AADHVIDI  211 (226)
T ss_pred             CHHHHH--hCCEEEEe
Confidence            554432  23999988

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.82  E-value=9.7e-20  Score=160.10  Aligned_cols=119  Identities=16%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc---------CCCCCHHHHHHHHHHHHH
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM---------TSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~---------~~~LSgGqkqrv~IArAL   81 (137)
                      +...++..|+++|+.++.......  ....  .++++.++++.+|+.+..+++         +++||||||||++|||||
T Consensus       522 Q~~~l~~~tv~eni~~~~~~~~~~--~~~~--~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal  597 (659)
T TIGR00954       522 QRPYMTLGTLRDQIIYPDSSEDMK--RRGL--SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF  597 (659)
T ss_pred             CCCCCCCcCHHHHHhcCCChhhhh--ccCC--CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence            333333449999998764221100  0011  234677889999998766554         378999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc-CceEEec
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      +++|+++||||||+|||+.+...+.+.+.  +.|++++||+   +..... |++++|.
T Consensus       598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~---~~~~~~~d~il~l~  652 (659)
T TIGR00954       598 YHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHR---KSLWKYHEYLLYMD  652 (659)
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCc---hHHHHhCCEEEEEe
Confidence            99999999999999999999999988665  6799995554   444434 8998875

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.82  E-value=8e-20  Score=136.88  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+|||||++|||||+.+|++|||||||+|||+.++..+++.+.     +.||++   .+|++..+..  |+++++.+
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sh~~~~~~~~~d~v~~l~~  179 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYE  179 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEecC
Confidence            99999999999999999999999999999999999998888543     579999   5666666555  89998864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.2e-20  Score=145.25  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=99.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      +-..+||++-+.||+..+. .+....+  ....+++.++.++|++..+++..+||||||||..||+.++++.++++||||
T Consensus        86 i~~rlTV~dLv~FGRfPYS-qGRlt~e--D~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP  162 (252)
T COG4604          86 INSRLTVRDLVGFGRFPYS-QGRLTKE--DRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP  162 (252)
T ss_pred             hhheeEHHHHhhcCCCccc-CCCCchH--HHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence            3456899999999875432 1212223  567889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      .++||....-+++..++      |.||.+   +.||+-+|-.  |+++++.
T Consensus       163 LNNLDmkHsv~iMk~Lrrla~el~Ktivi---VlHDINfAS~YsD~IVAlK  210 (252)
T COG4604         163 LNNLDMKHSVQIMKILRRLADELGKTIVV---VLHDINFASCYSDHIVALK  210 (252)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhCCeEEE---EEecccHHHhhhhheeeec
Confidence            99999999999888766      679998   8999999998  8887764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.82  E-value=1e-19  Score=157.32  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IA   78 (137)
                      |+...+.+-|+++|+.++.. .   .       .++++.+.++.+|           ++.........||||||||++||
T Consensus       415 ~Q~~~lf~~Ti~~Ni~~~~~-~---~-------~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA  483 (588)
T PRK13657        415 FQDAGLFNRSIEDNIRVGRP-D---A-------TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA  483 (588)
T ss_pred             ecCcccccccHHHHHhcCCC-C---C-------CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence            45555667899999987621 0   0       0112233333333           33334445677999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|+++|||||||+||+.+...+++.+.    +.|+++.||+.+-+..  .|+++.+.+
T Consensus       484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~--~D~ii~l~~  544 (588)
T PRK13657        484 RALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN--ADRILVFDN  544 (588)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh--CCEEEEEEC
Confidence            99999999999999999999999999988554    5799996666544321  389888754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=6.1e-20  Score=160.84  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      ..++.++++.+|+. ...++++++|||||||||+||+||+.+|++|||||||++||+.++.++.+.+.  +.+|++   .
T Consensus       126 ~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tvii---v  202 (638)
T PRK10636        126 RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL---I  202 (638)
T ss_pred             HHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEE---E
Confidence            45788999999997 56799999999999999999999999999999999999999999999988776  568999   6


Q ss_pred             cchhhhhhc--CceEEecC
Q psy317          121 TQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~~  137 (137)
                      +||..++..  +++++|.+
T Consensus       203 sHd~~~l~~~~d~i~~L~~  221 (638)
T PRK10636        203 SHDRDFLDPIVDKIIHIEQ  221 (638)
T ss_pred             eCCHHHHHHhcCEEEEEeC
Confidence            777777655  88888753

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.81  E-value=1e-19  Score=143.80  Aligned_cols=90  Identities=24%  Similarity=0.273  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG  118 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~  118 (137)
                      ...+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+++.+.     +.+|++  
T Consensus       117 ~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi--  194 (255)
T cd03236         117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV--  194 (255)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--
Confidence            4567889999999988899999999999999999999999999999999999999999887777543     579999  


Q ss_pred             cccchhhhhhc--CceEEec
Q psy317          119 NRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~  136 (137)
                       .+||+.++..  |+++++.
T Consensus       195 -iSHd~~~~~~~ad~i~~l~  213 (255)
T cd03236         195 -VEHDLAVLDYLSDYIHCLY  213 (255)
T ss_pred             -EECCHHHHHHhCCEEEEEC
Confidence             6666666664  8888874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.81  E-value=1e-19  Score=157.25  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA   78 (137)
                      |+...+.+-|+++|+.++...            .++++.+.++.+|+.+           .......+||||||||++||
T Consensus       421 ~Q~~~lF~~Ti~~NI~~~~~~------------~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA  488 (592)
T PRK10790        421 QQDPVVLADTFLANVTLGRDI------------SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA  488 (592)
T ss_pred             ccCCccccchHHHHHHhCCCC------------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            455555567999999976311            1123445555555443           33345677999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|++||||||||+||+.+.+.+.+.+.    +.|+++.||+.+.+..  .|++|++.+
T Consensus       489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~--~D~ii~l~~  549 (592)
T PRK10790        489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE--ADTILVLHR  549 (592)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence            99999999999999999999999998887654    5699997777655543  388888864

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=3.2e-20  Score=142.58  Aligned_cols=123  Identities=20%  Similarity=0.258  Sum_probs=98.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhH--Hhh-hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVL--AAM-FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~--~~~-~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      -|.+|.++||++|+.+.......  ..+ .+...+.+.+++++|...||.+..++..+.||.||||+++|++-++++|++
T Consensus        89 ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~l  168 (249)
T COG4674          89 KPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKL  168 (249)
T ss_pred             CCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcE
Confidence            36789999999999987532211  111 111111356899999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc---c-ceeeeeccccchhhhhhc--CceEEec
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV---D-TKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~---~-~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |+||||++|+.-.+..+.-+.+.   + -.|++   ..|||++...  ++|-+|.
T Consensus       169 LLlDEPvAGMTd~Et~~taeLl~~la~~hsilV---VEHDM~Fvr~~A~~VTVlh  220 (249)
T COG4674         169 LLLDEPVAGMTDAETEKTAELLKSLAGKHSILV---VEHDMGFVREIADKVTVLH  220 (249)
T ss_pred             EEecCccCCCcHHHHHHHHHHHHHHhcCceEEE---EeccHHHHHHhhheeEEEe
Confidence            99999999999998887666544   3 37777   8999999887  8887763

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.81  E-value=1.3e-19  Score=134.37  Aligned_cols=73  Identities=27%  Similarity=0.385  Sum_probs=61.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317           63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ++..||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.  +.|++++||..+..  ...|+++++.+
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~--~~~d~i~~l~~  162 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW--KFHDRVLDLDG  162 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH--hhCCEEEEEcC
Confidence            468999999999999999999999999999999999999998888655  57899977665432  23499998864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=1.7e-19  Score=136.27  Aligned_cols=72  Identities=28%  Similarity=0.300  Sum_probs=58.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|||||+||++|||||+.+|++|||||||+|||+.++..+++.+.     +.||+++||..++.-....|+++++.+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~  184 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKR  184 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcC
Confidence            999999999999999999999999999999999999998888543     679999555543211222389988864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.81  E-value=9e-20  Score=155.64  Aligned_cols=113  Identities=21%  Similarity=0.264  Sum_probs=81.4

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+.+.|++||+.++...    .       .++++.+.++..|+.+           .......+||||||||++||
T Consensus       402 ~Q~~~lf~~ti~~Ni~~~~~~----~-------~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la  470 (529)
T TIGR02857       402 PQHPFLFAGTIAENIRLARPD----A-------SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA  470 (529)
T ss_pred             cCCCcccCcCHHHHHhccCCC----C-------CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence            445555578999999875310    0       1123344455555433           33445678999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEe
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      ||++++|+++||||||++||+.+.+.+++.+.    +.|+++.||+.+-+..  .|+++++
T Consensus       471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~--~d~i~~l  529 (529)
T TIGR02857       471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER--ADRIVVL  529 (529)
T ss_pred             HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEeC
Confidence            99999999999999999999999999988655    5699995655544322  2888865

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.81  E-value=1.6e-19  Score=141.89  Aligned_cols=89  Identities=22%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317           47 ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR  120 (137)
Q Consensus        47 ~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~  120 (137)
                      +.+.++.+  |++...+.++..||+||+||++|||||+++|++|||||||+|||+.++..+++.+.    +.||+++||.
T Consensus       135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~  214 (257)
T cd03288         135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR  214 (257)
T ss_pred             cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            34455655  67767778889999999999999999999999999999999999999998887554    6799996666


Q ss_pred             cchhhhhhcCceEEecC
Q psy317          121 TQNLQQTIRNEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~~~~~~~~~  137 (137)
                      .+.+..  .|+++++++
T Consensus       215 ~~~~~~--~dri~~l~~  229 (257)
T cd03288         215 VSTILD--ADLVLVLSR  229 (257)
T ss_pred             hHHHHh--CCEEEEEEC
Confidence            666543  489888853

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=8.2e-20  Score=141.96  Aligned_cols=124  Identities=19%  Similarity=0.263  Sum_probs=95.6

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhc-chhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQ-SQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~-~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      |-...++++|+.||+.+........++... .....+...+.++.+  |+++..+.+++-|||||||-+++++|..+.|+
T Consensus        89 p~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pk  168 (263)
T COG1101          89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPK  168 (263)
T ss_pred             hhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCc
Confidence            455678999999999987432111111100 000233445566665  56788999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||+|||-|++|||...+.+++.-.      +.|-.|   .||+|++|..  +|.|++.
T Consensus       169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM---VTHnm~~Al~yG~RlImLh  223 (263)
T COG1101         169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM---VTHNMEDALDYGNRLIMLH  223 (263)
T ss_pred             EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE---EeccHHHHHhhCCeEEEEe
Confidence            999999999999999999988533      557778   9999999999  8998874

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=2.1e-19  Score=136.82  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhh--hcCc
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQT--IRNE  131 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~--~~~~  131 (137)
                      .++++..||+||+||++|||||+.+|++|||||||+|||+.++..+++.+.      +.++++++|  |+...+  ..|+
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~--h~~~~~~~~~d~  189 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY--QASDEIYDLFDK  189 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc--CCHHHHHHhCCe
Confidence            567889999999999999999999999999999999999999998888544      345555432  333333  3488


Q ss_pred             eEEecC
Q psy317          132 VCLISD  137 (137)
Q Consensus       132 ~~~~~~  137 (137)
                      ++++.+
T Consensus       190 i~~l~~  195 (202)
T cd03233         190 VLVLYE  195 (202)
T ss_pred             EEEEEC
Confidence            888764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.81  E-value=1.1e-19  Score=170.20  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=90.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhh--hhcchhHHHH-HHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHHhc
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAM--FNQSQAGSCF-ISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALELVN   83 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~--~~~~~~~~~~-~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL~~   83 (137)
                      +.+++.+||+|++.++..++.....  ....++..++ ++++++.+||.+..+++     ++.|||||||||+||++|+.
T Consensus       147 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~  226 (1394)
T TIGR00956       147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG  226 (1394)
T ss_pred             cccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence            4578899999999987543211000  0001012223 46689999998877765     46799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|++++|||||+|||+.++..+++.++      |.||++++|..-  .++..  |+|++|++
T Consensus       227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~--~~i~~l~D~v~~L~~  286 (1394)
T TIGR00956       227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS--QDAYELFDKVIVLYE  286 (1394)
T ss_pred             CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC--HHHHHhhceEEEEeC
Confidence            999999999999999999998888543      568999554332  33433  99998864

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.81  E-value=1.3e-19  Score=160.28  Aligned_cols=116  Identities=19%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+.|++||+.++..-    .       .++++.+.++..|+.           ...+....+||||||||++|
T Consensus       560 v~Q~~~lF~gTIreNI~~g~~~----~-------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal  628 (711)
T TIGR00958       560 VGQEPVLFSGSVRENIAYGLTD----T-------PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI  628 (711)
T ss_pred             EecCccccccCHHHHHhcCCCC----C-------CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence            4566667789999999876310    0       112334445554443           33344567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh--ccceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERK--VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||++++|+|+|||||||+||+.+.+.+.+..  .+.|+++.||+.+-+..  .|++++|.+
T Consensus       629 ARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~--aD~IivL~~  688 (711)
T TIGR00958       629 ARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER--ADQILVLKK  688 (711)
T ss_pred             HHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh--CCEEEEEEC
Confidence            99999999999999999999999998888733  36799996666654432  299988854

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.81  E-value=9.9e-20  Score=153.91  Aligned_cols=121  Identities=18%  Similarity=0.243  Sum_probs=99.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ++.+++.+||.||+.++.............  ..++++++.+++|+.-..+.+++.||-|+||||+|-+||.++|++|||
T Consensus        87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~--~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL  164 (501)
T COG3845          87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLIL  164 (501)
T ss_pred             ccccccccchhhhhhhcCccccccccCHHH--HHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEE
Confidence            578899999999999885321111111122  567899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||+-|-|.+.+.+++.++     |.+|+|   .||=+.++++  |||-+|.
T Consensus       165 DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~---ITHKL~Ev~~iaDrvTVLR  214 (501)
T COG3845         165 DEPTAVLTPQEADELFEILRRLAAEGKTIIF---ITHKLKEVMAIADRVTVLR  214 (501)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeccHHHHHHhhCeeEEEe
Confidence            99999999999999999665     889999   5566666666  7777663

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.81  E-value=2.8e-19  Score=135.42  Aligned_cols=72  Identities=33%  Similarity=0.479  Sum_probs=58.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      .||||||||++|||||+.+|+++||||||+|||+.++..+++.+.     +.||+++||..++.-....|++++|.+
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~  187 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ  187 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC
Confidence            899999999999999999999999999999999999998888543     669999555443211112488888763

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.81  E-value=1.9e-19  Score=133.88  Aligned_cols=68  Identities=29%  Similarity=0.505  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+||++|||||+.+|++|||||||+|||+.++..+++.+.     |.+|++   .+||...+..  |+++++++
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii---~th~~~~~~~~~d~i~~l~~  170 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL---SSHILEEAERLCDRVAILNN  170 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---ECCCHHHHHHhCCEEEEEeC
Confidence            99999999999999999999999999999999999998888544     568999   5666666654  89988864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.81  E-value=1.2e-19  Score=154.97  Aligned_cols=101  Identities=23%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|++||+.++..    ..       .++++.+.++..|+++.           ......+||||||||++|
T Consensus       413 V~Q~~~lF~~TI~eNI~~g~~----~~-------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai  481 (529)
T TIGR02868       413 FAQDAHLFDTTVRDNLRLGRP----DA-------TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL  481 (529)
T ss_pred             EccCcccccccHHHHHhccCC----CC-------CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence            466667778899999997631    00       12344555666555432           233456799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR  120 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~  120 (137)
                      ||||+.+|++||||||||+||+.+...+.+.+.    +.|+++.||+
T Consensus       482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            999999999999999999999999998888654    5699997765

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.81  E-value=1.4e-19  Score=157.67  Aligned_cols=89  Identities=27%  Similarity=0.306  Sum_probs=78.5

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR  120 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~  120 (137)
                      .++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.+.    +.+|++   .
T Consensus       191 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIi---v  267 (590)
T PRK13409        191 GKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV---V  267 (590)
T ss_pred             HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE---E
Confidence            467889999999988999999999999999999999999999999999999999999998888554    678999   6


Q ss_pred             cchhhhhhc--CceEEec
Q psy317          121 TQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~  136 (137)
                      +||+..+..  |+|+++.
T Consensus       268 sHd~~~l~~~~D~v~vl~  285 (590)
T PRK13409        268 EHDLAVLDYLADNVHIAY  285 (590)
T ss_pred             eCCHHHHHHhCCEEEEEe
Confidence            666666555  8998874

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.81  E-value=1.7e-19  Score=155.08  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+.|+++|+.++..    ..       .++++.+.++.+|+           +.........||||||||++|
T Consensus       419 ~~Q~~~lf~~Ti~~Ni~~~~~----~~-------~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l  487 (576)
T TIGR02204       419 VPQDPVLFAASVMENIRYGRP----DA-------TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI  487 (576)
T ss_pred             EccCCccccccHHHHHhcCCC----CC-------CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence            466677778999999987531    00       11233344444443           333344567799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||++++|++||||||||+||+.+.+.+++.+.    +.|+++.||+.+.+..  .|+|+.+++
T Consensus       488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~--~d~vi~l~~  549 (576)
T TIGR02204       488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK--ADRIVVMDQ  549 (576)
T ss_pred             HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence            999999999999999999999999998887554    5799996666655433  288888754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.2e-19  Score=142.63  Aligned_cols=93  Identities=19%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcc-------ceee
Q psy317           43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVD-------TKVD  115 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~-------~~v~  115 (137)
                      ..+++..+++.+|+.+.++++..+||-|||||+.||||||.+|++|||||||+|||...++.+.+++.+       .+++
T Consensus       148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll  227 (257)
T COG1119         148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL  227 (257)
T ss_pred             HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEE
Confidence            456788899999999999999999999999999999999999999999999999999999999997763       3788


Q ss_pred             eeccccchhhhhhcCceEEec
Q psy317          116 YTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |.||...++..-. .|+..|+
T Consensus       228 ~VtHh~eEi~~~~-th~lll~  247 (257)
T COG1119         228 FVTHHAEEIPPCF-THRLLLK  247 (257)
T ss_pred             EEEcchhhccccc-ceEEEee
Confidence            9555554443222 4554443

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.80  E-value=1.6e-19  Score=158.80  Aligned_cols=116  Identities=21%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|++||+.++..    ..       .++++.+.++..|+           +........+||||||||++|
T Consensus       544 v~Q~~~lf~~TI~eNi~~~~~----~~-------~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlal  612 (694)
T TIGR03375       544 VPQDPRLFYGTLRDNIALGAP----YA-------DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL  612 (694)
T ss_pred             ECCChhhhhhhHHHHHhCCCC----CC-------CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence            355566667899999987631    00       11233344444444           333445567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+.+|+++|||||||+||+.+...+++.+.    +.|+++.||+.+-+..  .|+++++.+
T Consensus       613 ARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~--~D~iivl~~  674 (694)
T TIGR03375       613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL--VDRIIVMDN  674 (694)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh--CCEEEEEeC
Confidence            999999999999999999999999998888654    5799996666654432  289988854

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.80  E-value=1.9e-19  Score=158.50  Aligned_cols=119  Identities=21%  Similarity=0.276  Sum_probs=85.1

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHH-----HHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGS-----CFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~-----~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~   82 (137)
                      ++...+.+.|++||+.++.. ....    ++  ..     ..+.+.++.+  |++........+||||||||++|||||+
T Consensus       537 ~q~~~lf~~ti~eNi~~~~~-~~~~----~~--i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall  609 (694)
T TIGR01846       537 LQENVLFSRSIRDNIALCNP-GAPF----EH--VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV  609 (694)
T ss_pred             ccCCeehhhhHHHHHhcCCC-CCCH----HH--HHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence            45556667899999987531 0000    00  11     1122334433  4555556667899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ++|++|||||||++||+.+...+++.+.    +.|+++.||+.+.+..  .|+++++.+
T Consensus       610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~--~d~ii~l~~  666 (694)
T TIGR01846       610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA--CDRIIVLEK  666 (694)
T ss_pred             hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh--CCEEEEEeC
Confidence            9999999999999999999999888655    5699997776655433  388888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.80  E-value=2.4e-19  Score=156.82  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT  121 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~  121 (137)
                      ..++.++++.+|+.  .++++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.  +.+|++   .+
T Consensus       136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvli---vs  210 (635)
T PRK11147        136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIF---IS  210 (635)
T ss_pred             HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEE---Ee
Confidence            45788999999996  388999999999999999999999999999999999999999999988776  358999   66


Q ss_pred             chhhhhhc--CceEEecC
Q psy317          122 QNLQQTIR--NEVCLISD  137 (137)
Q Consensus       122 ~~~~~~~~--~~~~~~~~  137 (137)
                      ||..++..  +++++|.+
T Consensus       211 Hd~~~l~~~~d~i~~L~~  228 (635)
T PRK11147        211 HDRSFIRNMATRIVDLDR  228 (635)
T ss_pred             CCHHHHHHhcCeEEEEEC
Confidence            77776655  88888753

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.80  E-value=3.9e-19  Score=153.12  Aligned_cols=118  Identities=22%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~   82 (137)
                      |++..+.+-|+++|+.++..- ...    ++  ..+     .+.+.+..+  |++.........||||||||++||||++
T Consensus       409 ~Qd~~LF~~TI~~NI~~g~~~-at~----ee--i~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall  481 (567)
T COG1132         409 SQDPLLFSGTIRENIALGRPD-ATD----EE--IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL  481 (567)
T ss_pred             cccceeecccHHHHHhcCCCC-CCH----HH--HHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence            456666669999999987421 000    11  111     123444454  5666666677899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      .+|+|||||||||+||+.+...+.+.+.    +.|+++.+|+.+-+..  .|+++++.
T Consensus       482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~--aD~IiVl~  537 (567)
T COG1132         482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN--ADRIIVLD  537 (567)
T ss_pred             cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh--CCEEEEEE
Confidence            9999999999999999999988888654    5588886666655444  38888774

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.5e-19  Score=156.98  Aligned_cols=91  Identities=24%  Similarity=0.372  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      ..++.++|..+++. ...+++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.+.  +.||++   .
T Consensus       407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~---v  483 (638)
T PRK10636        407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVV---V  483 (638)
T ss_pred             HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEE---E
Confidence            35678899999996 46899999999999999999999999999999999999999999999988665  348999   6


Q ss_pred             cchhhhhhc--CceEEecC
Q psy317          121 TQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~~  137 (137)
                      +||+.++..  |+++++.+
T Consensus       484 SHd~~~~~~~~d~i~~l~~  502 (638)
T PRK10636        484 SHDRHLLRSTTDDLYLVHD  502 (638)
T ss_pred             eCCHHHHHHhCCEEEEEEC
Confidence            677776655  88888753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.79  E-value=3e-19  Score=157.34  Aligned_cols=117  Identities=17%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|++||+.++....   .       .++++.+.++..|           ++........+||||||||++|
T Consensus       553 v~Q~~~lf~gTI~eNi~l~~~~~---~-------~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial  622 (708)
T TIGR01193       553 LPQEPYIFSGSILENLLLGAKEN---V-------SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL  622 (708)
T ss_pred             EecCceehhHHHHHHHhccCCCC---C-------CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence            35566666789999999762111   0       1122333344333           3334455677899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||++++|++||||||||+||+.+.+.+++.+.   +.|+++.||+..-+..  .|+++++++
T Consensus       623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~--~D~i~~l~~  683 (708)
T TIGR01193       623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ--SDKIIVLDH  683 (708)
T ss_pred             HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc--CCEEEEEEC
Confidence            999999999999999999999999998887654   5799996666654322  399988864

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.79  E-value=2e-19  Score=135.71  Aligned_cols=115  Identities=22%  Similarity=0.237  Sum_probs=93.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+.+|+ -||++|+.|+..++...     -  ...++...|+++++.+ .+++++.+||||+|||++|+|-|..-|+||+
T Consensus        85 ~paLfg-~tVeDNlifP~~~r~rr-----~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL  156 (223)
T COG4619          85 TPALFG-DTVEDNLIFPWQIRNRR-----P--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILL  156 (223)
T ss_pred             Cccccc-cchhhccccchHHhccC-----C--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEE
Confidence            445554 79999999886554221     1  3467788999999976 5689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ||||||+||+.+++.+-+++-      +..|.-   .|||=.||++  ++++-+.
T Consensus       157 LDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~W---iTHd~dqa~rha~k~itl~  208 (223)
T COG4619         157 LDEITSALDESNKRNIEEMIHRYVREQNVAVLW---ITHDKDQAIRHADKVITLQ  208 (223)
T ss_pred             ecCchhhcChhhHHHHHHHHHHHhhhhceEEEE---EecChHHHhhhhheEEEec
Confidence            999999999999988766432      457777   7999999999  8887553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=4.2e-19  Score=153.25  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHHH
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIAL   79 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IAr   79 (137)
                      +...+.+-|+++|+.++..-    .       .++++.+.++..+           ++...+....+||||||||++|||
T Consensus       396 q~~~lf~~ti~~Ni~~~~~~----~-------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR  464 (569)
T PRK10789        396 QTPFLFSDTVANNIALGRPD----A-------TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR  464 (569)
T ss_pred             cCCeeccccHHHHHhcCCCC----C-------CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence            33344456999999875310    0       0112223334333           344445667889999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           80 ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+++|+++||||||++||+.+...+++.+.    +.|+++.||+...+..  .|+++++.+
T Consensus       465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~--~d~i~~l~~  524 (569)
T PRK10789        465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE--ASEILVMQH  524 (569)
T ss_pred             HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc--CCEEEEEeC
Confidence            9999999999999999999999998888654    6799997766654433  388888753

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.6e-19  Score=151.65  Aligned_cols=113  Identities=21%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC----------ccCCCCCHHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT----------TMTSNLSGGQKKRLSIAL   79 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~----------~~~~~LSgGqkqrv~IAr   79 (137)
                      ++...+..-|++||+.++..    ..       .++.+.++++..|+.+..+          .....|||||+||+++||
T Consensus       401 ~Q~p~lf~gTireNi~l~~~----~~-------s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR  469 (559)
T COG4988         401 SQNPYLFAGTIRENILLARP----DA-------SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR  469 (559)
T ss_pred             CCCCccccccHHHHhhccCC----cC-------CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence            45566777899999997631    11       2345566777776654433          345669999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHhHHHHHHh----hccceeeeeccccchhhhhhc-CceEEec
Q psy317           80 ELVNNPPIMFFDEPTSPLHKAEFTPKYER----KVDTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~----~~~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      ||.++++++|+||||++||..+.+.+.+.    .++.||++.||+.|+   +.+ |+|+++.
T Consensus       470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~---~~~~D~I~vld  528 (559)
T COG4988         470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED---AADADRIVVLD  528 (559)
T ss_pred             HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH---HhcCCEEEEec
Confidence            99999999999999999999999877774    347899995555555   445 7777764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.79  E-value=4.7e-19  Score=156.88  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=83.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      ++..++.+-|++||+.++..-...+..  .+.....-+.+....+  |++........+||||||||++|||||.++|+|
T Consensus       553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i--~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I  630 (709)
T COG2274         553 LQDPFLFSGSIRENIALGNPEATDEEI--IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI  630 (709)
T ss_pred             cccchhhcCcHHHHHhcCCCCCCHHHH--HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence            567778889999999986321000000  0000001122223322  444555667888999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      ||||||||+||+.+...+++.+.    |.|+++.+|+.   .-... |+++++.
T Consensus       631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl---~ti~~adrIiVl~  681 (709)
T COG2274         631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL---STIRSADRIIVLD  681 (709)
T ss_pred             EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc---hHhhhccEEEEcc
Confidence            99999999999999999998655    67999955554   33333 7777764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.79  E-value=5e-19  Score=132.13  Aligned_cols=70  Identities=26%  Similarity=0.386  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||||||++|||||+.+|+++||||||+|||+.++..+++.+.      +.+++++||..+.+... .|+++++++
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~  176 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVLRD  176 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeC
Confidence            99999999999999999999999999999999999998888543      47999955555444322 288888763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.79  E-value=4.3e-19  Score=166.84  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=83.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+++.|++|||.++..    ..       .++.+.+.++..+           ++.........||||||||++||
T Consensus      1302 ~Qep~LF~gTIreNI~~g~~----~a-------t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265       1302 SQEPMLFNMSIYENIKFGKE----DA-------TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370 (1466)
T ss_pred             CCCCccccccHHHHHhcCCC----CC-------CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHH
Confidence            56666778999999998731    00       1122333444433           33344456678999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|+|||||||||+||+.+.+.+.+.+      .+.|+++.+|+..-++.  .|++++|.+
T Consensus      1371 RALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~--aD~Ivvl~~ 1433 (1466)
T PTZ00265       1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR--SDKIVVFNN 1433 (1466)
T ss_pred             HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh--CCEEEEEeC
Confidence            9999999999999999999999988887643      36699996666654443  288888863

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.79  E-value=1.2e-18  Score=139.57  Aligned_cols=76  Identities=17%  Similarity=0.275  Sum_probs=62.5

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEE
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCL  134 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~  134 (137)
                      .++++..||||||||++|||||+.+|++|||||||+|||+.++..+++.+     .+.+|+++||..+.+.  ..|++++
T Consensus       153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~--~~d~i~~  230 (282)
T cd03291         153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK--KADKILI  230 (282)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH--hCCEEEE
Confidence            34567899999999999999999999999999999999999998777632     2679999766665553  2389988


Q ss_pred             ecC
Q psy317          135 ISD  137 (137)
Q Consensus       135 ~~~  137 (137)
                      |.+
T Consensus       231 l~~  233 (282)
T cd03291         231 LHE  233 (282)
T ss_pred             EEC
Confidence            864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PLN03073 ABC transporter F family; Provisional

Probab=99.78  E-value=5.9e-19  Score=156.59  Aligned_cols=91  Identities=22%  Similarity=0.297  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      .+++.++|+.+|+.. ..++++..||||||||++|||||+.+|++|||||||+|||+.++..+++.+.  +.||++   .
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIi---v  680 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLM---V  680 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEE---E
Confidence            356788999999974 6789999999999999999999999999999999999999999999988765  358999   6


Q ss_pred             cchhhhhhc--CceEEecC
Q psy317          121 TQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~~  137 (137)
                      +||+.++..  +++++|.+
T Consensus       681 SHd~~~i~~~~drv~~l~~  699 (718)
T PLN03073        681 SHDEHLISGSVDELWVVSE  699 (718)
T ss_pred             ECCHHHHHHhCCEEEEEEC
Confidence            677777765  88888753

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3.7e-19  Score=151.83  Aligned_cols=115  Identities=19%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             hccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHH
Q psy317            8 SSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLS   76 (137)
Q Consensus         8 ~~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~   76 (137)
                      -.++...+..-|+++|+.++..    .    .   -++.+.++++.+|+++.           .+.-...|||||+||++
T Consensus       416 vl~Qr~hlF~~Tlr~NL~lA~~----~----A---sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA  484 (573)
T COG4987         416 VLTQRVHLFSGTLRDNLRLANP----D----A---SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA  484 (573)
T ss_pred             hhccchHHHHHHHHHHHhhcCC----C----C---CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence            3567777778899999986531    1    1   13455667888877553           34446789999999999


Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhccceeeeeccccchhhhhhc-CceEEec
Q psy317           77 IALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKVDTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        77 IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      |||+|.++.+++||||||.|||+.+..++++    ..+|+|+++   .||.+..+-+ |++|++.
T Consensus       485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~---vTHrL~~le~~drIivl~  546 (573)
T COG4987         485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM---VTHRLRGLERMDRIIVLD  546 (573)
T ss_pred             HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE---EecccccHhhcCEEEEEE
Confidence            9999999999999999999999999998887    456999999   8888888888 9999875

>PLN03073 ABC transporter F family; Provisional

Probab=99.78  E-value=7.5e-19  Score=155.94  Aligned_cols=91  Identities=19%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      +.++.++|..+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.++.+.+.  +.||++   .
T Consensus       321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tvii---v  397 (718)
T PLN03073        321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIV---V  397 (718)
T ss_pred             HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEE---E
Confidence            45677788889986 45688999999999999999999999999999999999999999999999777  679999   5


Q ss_pred             cchhhhhhc--CceEEecC
Q psy317          121 TQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~~~  137 (137)
                      +||..+...  +++++|.+
T Consensus       398 sHd~~~l~~~~d~i~~l~~  416 (718)
T PLN03073        398 SHAREFLNTVVTDILHLHG  416 (718)
T ss_pred             ECCHHHHHHhCCEEEEEEC
Confidence            666666554  88888753

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.78  E-value=7.5e-19  Score=131.04  Aligned_cols=72  Identities=21%  Similarity=0.415  Sum_probs=62.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +..||||||||++||||++.+|++|||||||+|||+.++..+++.+.    +.||+++||..+.+..  .|+++++.+
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~~  171 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLEN  171 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence            78999999999999999999999999999999999999998888654    5699997777666542  389988864

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.77  E-value=9.4e-19  Score=130.12  Aligned_cols=69  Identities=29%  Similarity=0.433  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+++.+.     +.+|+++||..+.+.  ..|+++++.+
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~v~~l~~  170 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA--SADRILVLED  170 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence            99999999999999999999999999999999999998887543     569999666665442  2499998864

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>KOG0057|consensus

Probab=99.77  E-value=1.1e-18  Score=149.24  Aligned_cols=114  Identities=24%  Similarity=0.262  Sum_probs=94.1

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I   77 (137)
                      .|++.++.+-|+..|+.+|.. .   .    .   .+++.++.+..|+.+.           ...+...|||||||||+|
T Consensus       430 VPQd~~LFndTIl~NI~YGn~-s---a----s---~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl  498 (591)
T KOG0057|consen  430 VPQDSVLFNDTILYNIKYGNP-S---A----S---DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL  498 (591)
T ss_pred             eCCcccccchhHHHHhhcCCC-C---c----C---HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH
Confidence            488999999999999998752 1   1    1   2345566666666442           445567799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      |||++.+|+|+++|||||+||..+...+++.+.    +.|+++   .-||+.-+.+ |++|++.
T Consensus       499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~---IvH~l~ll~~~DkI~~l~  559 (591)
T KOG0057|consen  499 ARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM---IVHRLDLLKDFDKIIVLD  559 (591)
T ss_pred             HHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE---EEecchhHhcCCEEEEEE
Confidence            999999999999999999999999999988766    569999   8899999999 9999986

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.77  E-value=1.1e-18  Score=128.95  Aligned_cols=68  Identities=26%  Similarity=0.441  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+++.++     +.||++   .+||+..+..  |+++++.+
T Consensus        83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sh~~~~~~~~~d~~~~l~~  157 (163)
T cd03216          83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF---ISHRLDEVFEIADRVTVLRD  157 (163)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999999999999999999999998888553     679999   4555554433  88887753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.77  E-value=1.1e-18  Score=164.05  Aligned_cols=91  Identities=23%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCCccc-----CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317           47 ISEILDTLGLQEHK-----TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD  115 (137)
Q Consensus        47 ~~~~L~~lgL~~~~-----~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~  115 (137)
                      ++++++.+||+++.     ++.++.|||||||||+||++|+.+|++++|||||+|||+.++.++++.++      |.||+
T Consensus       312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi  391 (1470)
T PLN03140        312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL  391 (1470)
T ss_pred             HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence            57799999998765     55678999999999999999999999999999999999999999988543      66999


Q ss_pred             eeccccchhhhhhcCceEEecC
Q psy317          116 YTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +++|....-....-|+|++|++
T Consensus       392 is~Hqp~~~i~~lfD~vilL~~  413 (1470)
T PLN03140        392 MSLLQPAPETFDLFDDIILLSE  413 (1470)
T ss_pred             EEecCCCHHHHHHhheEEEeeC
Confidence            9666443223334499999874

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.76  E-value=1.5e-18  Score=128.75  Aligned_cols=69  Identities=30%  Similarity=0.503  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+|||||++|||||+.+|++|||||||+|||+.++..+++.+.    +.+|+++||....+..  .|++++|.+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~~  169 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVLDD  169 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEEcC
Confidence            99999999999999999999999999999999999998887554    5689996666666542  489998864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0059|consensus

Probab=99.76  E-value=1.1e-18  Score=157.88  Aligned_cols=116  Identities=18%  Similarity=0.319  Sum_probs=97.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|.+|++.+...++..   +..+  ..+.++..++.+|+.+.++++++.+|||+|||+++|.|++.+|++++||
T Consensus       649 d~l~~~lT~rEhL~~~arlrG~---~~~d--i~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD  723 (885)
T KOG0059|consen  649 DALWEELTGREHLEFYARLRGL---PRSD--IGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD  723 (885)
T ss_pred             hhhhhhccHHHHHHHHHHHcCC---ChhH--HHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence            4578899999999987655422   2223  5667899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEe
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~  135 (137)
                      |||+|+||.+++.+++...     +..|++   |+|.|++|=.  +|+.++
T Consensus       724 EPstGmDP~arr~lW~ii~~~~k~g~aiiL---TSHsMeE~EaLCtR~aIm  771 (885)
T KOG0059|consen  724 EPSTGLDPKARRHLWDIIARLRKNGKAIIL---TSHSMEEAEALCTRTAIM  771 (885)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHHhhhhhee
Confidence            9999999999998888433     348889   8888888876  776654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.76  E-value=2.7e-18  Score=146.43  Aligned_cols=125  Identities=11%  Similarity=0.195  Sum_probs=99.1

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      ....++..+++.+|+.+...........-..+...+.++++.+.+++.. ..+.++.+||||+||||.|||.|+.+|++|
T Consensus       344 k~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL  423 (500)
T COG1129         344 KSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL  423 (500)
T ss_pred             ccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEE
Confidence            3456889999999998872111111101111113457888999999964 457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||.|+|..++.+|++.++     |.+|++   ...++.+.++  |||+++++
T Consensus       424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~---iSSElpEll~~~DRIlVm~~  476 (500)
T COG1129         424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM---ISSELPELLGLSDRILVMRE  476 (500)
T ss_pred             EECCCCcCcccchHHHHHHHHHHHHHCCCEEEE---EeCChHHHHhhCCEEEEEEC
Confidence            9999999999999999999665     789999   7889999998  99999864

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.4e-18  Score=133.52  Aligned_cols=123  Identities=19%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             ccCCC-CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----
Q psy317            9 SIWDS-MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN----   83 (137)
Q Consensus         9 ~~~~~-l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----   83 (137)
                      +|+.. +-+.+||.|.+.++.-.+....   +-.+..+.++++|...++..+..+-+..|||||||||.+||.|++    
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~---~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~  156 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGR---EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP  156 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCC---CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence            44443 3455899999999864332111   111145568899999999999999999999999999999999976    


Q ss_pred             --CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           84 --NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        84 --~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                        .+++|+||||||+||...+..+++..+     |..|..   ..||+-.|..  ||++++.+
T Consensus       157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~---VLHDLNLAA~YaDrivll~~  216 (259)
T COG4559         157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA---VLHDLNLAAQYADRIVLLHQ  216 (259)
T ss_pred             CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEE---EEccchHHHHhhheeeeeeC
Confidence              456999999999999999999998765     667887   7899999988  99988753

>PLN03232 ABC transporter C family member; Provisional

Probab=99.76  E-value=2.5e-18  Score=162.05  Aligned_cols=114  Identities=23%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+.+-|++||+.++...            .++++.++++..++.           ........+||||||||++||
T Consensus       685 ~Q~p~Lf~gTIreNI~fg~~~------------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA  752 (1495)
T PLN03232        685 PQVSWIFNATVRENILFGSDF------------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA  752 (1495)
T ss_pred             cCccccccccHHHHhhcCCcc------------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence            455556678999999987421            112333444444442           233445678999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+.++|+|+|||||||+||+.....+++..     .+.|+++.||..+-+..  .|++++|.|
T Consensus       753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~--aD~Ii~L~~  814 (1495)
T PLN03232        753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL--MDRIILVSE  814 (1495)
T ss_pred             HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh--CCEEEEEeC
Confidence            9999999999999999999999888777642     46799996655543332  288888864

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=6.1e-19  Score=131.30  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=89.4

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ++.+||.++|.+|+.|..-..    .....  .++.+...|+++|+....++-|.+||||||.||++-|+|...|+.++|
T Consensus        85 D~lLFphlsVg~Nl~fAlp~~----~KG~a--Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL  158 (213)
T COG4136          85 DALLFPHLSVGQNLLFALPAT----LKGNA--RRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL  158 (213)
T ss_pred             ccccccccccccceEEecCcc----cccHH--HHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence            567899999999998763211    11112  445678899999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHH----hhc--cceeeeeccccchhhhhhcCceE
Q psy317           91 DEPTSPLHKAEFTPKYE----RKV--DTKVDYTGNRTQNLQQTIRNEVC  133 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~----~~~--~~~v~~~~~~~~~~~~~~~~~~~  133 (137)
                      |||+|.||..-+.++-+    +.+  |+-.+++||..+|+.  .+.|||
T Consensus       159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp--agsrVi  205 (213)
T COG4136         159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP--AGSRVI  205 (213)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCeee
Confidence            99999999998887766    333  666667455544444  236766

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.75  E-value=3.5e-18  Score=160.74  Aligned_cols=91  Identities=24%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             HHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---
Q psy317           45 CFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---  110 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---  110 (137)
                      +.+.++++.+++.+.           .+..+..||||||||++|||||+++|+||||||||++||+.+...+.+.+.   
T Consensus       547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~  626 (1466)
T PTZ00265        547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK  626 (1466)
T ss_pred             HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence            456777777777544           345678999999999999999999999999999999999999998877443   


Q ss_pred             ---cceeeeeccccchhhhhhcCceEEecC
Q psy317          111 ---DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       111 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                         |.|+++.||+.+.+.  ..|+++++++
T Consensus       627 ~~~g~TvIiIsHrls~i~--~aD~Iivl~~  654 (1466)
T PTZ00265        627 GNENRITIIIAHRLSTIR--YANTIFVLSN  654 (1466)
T ss_pred             hcCCCEEEEEeCCHHHHH--hCCEEEEEeC
Confidence               579999555554331  2399999864

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.75  E-value=5.2e-18  Score=145.83  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cc
Q psy317           44 SCFISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DT  112 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~  112 (137)
                      ++.+.+.++.+++....+..     ..+||||||||++||||++++|++|||||||++||+.+...+++.+.      +.
T Consensus       422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~  501 (547)
T PRK10522        422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK  501 (547)
T ss_pred             HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            34667788888887654321     46899999999999999999999999999999999999998876542      67


Q ss_pred             eeeeeccccchhhhhhcCceEEecC
Q psy317          113 KVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       113 ~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |+++.||+.+-+.  ..|+++++.+
T Consensus       502 tvi~itH~~~~~~--~~d~i~~l~~  524 (547)
T PRK10522        502 TIFAISHDDHYFI--HADRLLEMRN  524 (547)
T ss_pred             EEEEEEechHHHH--hCCEEEEEEC
Confidence            9999777654332  2388888764

>KOG0055|consensus

Probab=99.75  E-value=5.4e-18  Score=155.19  Aligned_cols=113  Identities=22%  Similarity=0.217  Sum_probs=77.2

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-----HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-----ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP   86 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-----~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~   86 (137)
                      .+...|++||+.++..-    . +..+  ..+.     +.+.+..+  |++.....+..+||||||||++|||||+.+|+
T Consensus       437 vlF~~tI~eNI~~G~~d----a-t~~~--i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~  509 (1228)
T KOG0055|consen  437 VLFATTIRENIRYGKPD----A-TREE--IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK  509 (1228)
T ss_pred             hhhcccHHHHHhcCCCc----c-cHHH--HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence            56679999999987421    0 0001  1111     11122221  44445556667799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317           87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      |||||||||+||+.+...+-+.+.    |.|-++   .+|.+.+-.. |.++++.
T Consensus       510 ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv---VaHRLStIrnaD~I~v~~  561 (1228)
T KOG0055|consen  510 ILLLDEATSALDAESERVVQEALDKASKGRTTIV---VAHRLSTIRNADKIAVME  561 (1228)
T ss_pred             EEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE---EeeehhhhhccCEEEEEE
Confidence            999999999999999887666544    556666   4555554444 7777765

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.75  E-value=3.7e-18  Score=124.08  Aligned_cols=71  Identities=27%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317           64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.  +.+|++   .+|+...+..  |+++++.+
T Consensus        68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~---~th~~~~~~~~~d~v~~l~~  142 (144)
T cd03221          68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVIL---VSHDRYFLDQVATKIIELED  142 (144)
T ss_pred             EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhCCEEEEEeC
Confidence            34599999999999999999999999999999999999999988766  568999   5566666544  89988864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PTZ00243 ABC transporter; Provisional

Probab=99.75  E-value=7.7e-18  Score=159.20  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHH-HHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGS-CFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~-~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+.|+++|+.++.... ....  .+ ..+ ..+.+.++.+  |+....++++.+||||||||++|||||+.+|+++|||
T Consensus       732 l~~~Tv~enI~~~~~~~-~~~~--~~-~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD  807 (1560)
T PTZ00243        732 IMNATVRGNILFFDEED-AARL--AD-AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD  807 (1560)
T ss_pred             cCCCcHHHHHHcCChhh-HHHH--HH-HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            34679999999763211 0000  00 011 2344556666  7777778889999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhcCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||++||+.....+++.     ..|.|+++.||..+.+..  .|++++|.+
T Consensus       808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~--ad~ii~l~~  856 (1560)
T PTZ00243        808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR--ADYVVALGD  856 (1560)
T ss_pred             CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence            99999999988777653     347799996655555432  299998864

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.75  E-value=3.7e-18  Score=129.66  Aligned_cols=73  Identities=25%  Similarity=0.254  Sum_probs=60.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceE
Q psy317           62 TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVC  133 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~  133 (137)
                      +.+..|||||+||++|||||+.+|+++||||||+|||+.++..+++.+.     +.||+++||   ++..+.   .|+++
T Consensus       100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh---~~~~~~~~~~d~i~  176 (200)
T cd03217         100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH---YQRLLDYIKPDRVH  176 (200)
T ss_pred             hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec---CHHHHHHhhCCEEE
Confidence            3447899999999999999999999999999999999999998888543     679999555   455544   48888


Q ss_pred             EecC
Q psy317          134 LISD  137 (137)
Q Consensus       134 ~~~~  137 (137)
                      +|.+
T Consensus       177 ~l~~  180 (200)
T cd03217         177 VLYD  180 (200)
T ss_pred             EEEC
Confidence            8753

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.75  E-value=6.9e-18  Score=145.45  Aligned_cols=92  Identities=21%  Similarity=0.270  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCCCcccCcc------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------cc
Q psy317           44 SCFISEILDTLGLQEHKTTM------TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VD  111 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~------~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~  111 (137)
                      ++++.+.++.+++.+..++.      ..+||||||||++||||++.+|+++||||||++||+.+...+++.+      .+
T Consensus       442 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~  521 (555)
T TIGR01194       442 LDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG  521 (555)
T ss_pred             HHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence            34567789999998765443      3579999999999999999999999999999999999999886532      37


Q ss_pred             ceeeeeccccchhhhhhcCceEEecC
Q psy317          112 TKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus       112 ~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      .|+++.||+.+-+.  ..|++++|.+
T Consensus       522 ~tiiiisH~~~~~~--~~d~i~~l~~  545 (555)
T TIGR01194       522 KTIIIISHDDQYFE--LADQIIKLAA  545 (555)
T ss_pred             CEEEEEeccHHHHH--hCCEEEEEEC
Confidence            79999666654322  2399988854

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.74  E-value=8.3e-18  Score=159.41  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=81.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+.+-|++||+.++...            .++++.++++..++.           ........+||||||||++||
T Consensus       685 ~Q~p~LfngTIreNI~fg~~~------------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA  752 (1622)
T PLN03130        685 PQVSWIFNATVRDNILFGSPF------------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA  752 (1622)
T ss_pred             cCccccCCCCHHHHHhCCCcc------------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence            455556678999999987421            112333444444442           233455678999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||+.++|+|+|||||||+||+.....+++.     +.+.|+++.||..+-+.+  .|+|++|.|
T Consensus       753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~--aD~Ii~L~~  814 (1622)
T PLN03130        753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ--VDRIILVHE  814 (1622)
T ss_pred             HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh--CCEEEEEeC
Confidence            999999999999999999999988777653     346799995555543332  289988864

>PLN03232 ABC transporter C family member; Provisional

Probab=99.74  E-value=6e-18  Score=159.47  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|+++|+..+..     .       .++++.+.++..++           +........+||||||||++|
T Consensus      1315 VpQdp~LF~gTIr~NL~~~~~-----~-------sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232       1315 IPQSPVLFSGTVRFNIDPFSE-----H-------NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred             ECCCCeeeCccHHHHcCCCCC-----C-------CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence            356665666799999986421     0       11234444555544           333445567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+.+.++    +.||++.+|+.+-+..  .|++++|.+
T Consensus      1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~--~DrIlVL~~ 1444 (1495)
T PLN03232       1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID--CDKILVLSS 1444 (1495)
T ss_pred             HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence            999999999999999999999999887776544    6799996666644433  299998864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.74  E-value=7.6e-18  Score=127.01  Aligned_cols=68  Identities=22%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||||||++||||++.+|+++||||||+|||+.++..+.+.+.      +.+|++   .+||+..+..  |+++++.+
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~  147 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV---VEHDLAVLDYLSDRIHVFEG  147 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE---EECCHHHHHHhCCEEEEEcC
Confidence            99999999999999999999999999999999999987777543      378999   6666666654  88888764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.5e-17  Score=126.67  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+-+.+|++||+.|...++..      .  ....+.+.++.|||....|.+++.||.||||||+|||-++..+++.||
T Consensus        83 ~~giK~eLTa~ENL~F~~~~~~~------~--~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL  154 (209)
T COG4133          83 QPGIKTELTALENLHFWQRFHGS------G--NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL  154 (209)
T ss_pred             cccccchhhHHHHHHHHHHHhCC------C--chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence            34566789999999986543321      1  234677889999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT  121 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~  121 (137)
                      ||||++||......+-..+.     |.-|+.|||-.
T Consensus       155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~  190 (209)
T COG4133         155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP  190 (209)
T ss_pred             cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence            99999999999976655433     66777877754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.73  E-value=1.2e-17  Score=158.32  Aligned_cols=115  Identities=16%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|+++|+..+...            .++.+.+.++..++           +........+||||||||++|
T Consensus      1318 VpQdp~LF~GTIreNLd~~~~~------------tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130       1318 IPQAPVLFSGTVRFNLDPFNEH------------NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred             ECCCCccccccHHHHhCcCCCC------------CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence            4566666677999999764210            11234445555444           333444567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+.+.++    +.||++.+|+.+-+..+  |++++|.+
T Consensus      1386 ARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~--DrIlVLd~ 1447 (1622)
T PLN03130       1386 ARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC--DRILVLDA 1447 (1622)
T ss_pred             HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC--CEEEEEEC
Confidence            999999999999999999999999888877554    57999966666554432  99998864

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=2.4e-17  Score=129.10  Aligned_cols=116  Identities=14%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--------------------cccCccCCCCCHHHH
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--------------------EHKTTMTSNLSGGQK   72 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--------------------~~~~~~~~~LSgGqk   72 (137)
                      .+.+.+||.+++..+........ ....  ..+++.++|+.+|+.                    +..++++.+||+|||
T Consensus        96 ~~~~~ltV~r~I~~~~~~~~~in-~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~  172 (251)
T cd03273          96 ENYPEITVTRQIVLGGTNKYLIN-GHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQR  172 (251)
T ss_pred             cCCceEEEEEEEEcCCceEEEEC-CEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHH
Confidence            34567788777755421110000 0112  346788899999986                    445688999999999


Q ss_pred             HHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceE
Q psy317           73 KRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVC  133 (137)
Q Consensus        73 qrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~  133 (137)
                      ||++||+||+    .+|+++|+||||++||+.++..+++.+.    |.+|+++||..+-+..  .|+++
T Consensus       173 qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~--~d~v~  239 (251)
T cd03273         173 SLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN--ANVLF  239 (251)
T ss_pred             HHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEE
Confidence            9999999998    5789999999999999999998888554    6689998888554443  36665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.73  E-value=1.9e-17  Score=156.30  Aligned_cols=117  Identities=20%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH--HHHHHHHHc-----CCCcccCccCCCCCHHHHHHHHHHHHHhc
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC--FISEILDTL-----GLQEHKTTMTSNLSGGQKKRLSIALELVN   83 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~l-----gL~~~~~~~~~~LSgGqkqrv~IArAL~~   83 (137)
                      +...+.+.|+++|+.++....  ..    .  .++  .+.++.+.+     |.....+.++.+||||||||++||||++.
T Consensus       706 Q~~~l~~~Ti~eNI~~g~~~~--~~----~--~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~  777 (1522)
T TIGR00957       706 QQAWIQNDSLRENILFGKALN--EK----Y--YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS  777 (1522)
T ss_pred             CCccccCCcHHHHhhcCCccC--HH----H--HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            333345689999999864211  00    0  111  111112222     22234567789999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc-------cceeeeeccccchhhhhhcCceEEecC
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV-------DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +|+++||||||++||+.....+++.+.       +.|++++||..+.+..  .|+++++.+
T Consensus       778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l~~  836 (1522)
T TIGR00957       778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVMSG  836 (1522)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEecC
Confidence            999999999999999999999987653       5699996655554433  299988864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.73  E-value=1.8e-17  Score=126.38  Aligned_cols=87  Identities=22%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeee
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDY  116 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~  116 (137)
                      +++.++++.   .+..++++.+||||||||++||++++    .+|+++||||||+|||+..+..+++.+.    +.+|++
T Consensus        95 ~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIi  171 (197)
T cd03278          95 GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIV  171 (197)
T ss_pred             hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEE
Confidence            456677776   55678899999999999999999997    4679999999999999999998888554    568999


Q ss_pred             eccccchhhhhhcCceEEec
Q psy317          117 TGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~  136 (137)
                      +||..+.+.  ..|+++.+.
T Consensus       172 itH~~~~~~--~~d~v~~~~  189 (197)
T cd03278         172 ITHRKGTME--AADRLYGVT  189 (197)
T ss_pred             EECCHHHHh--hcceEEEEE
Confidence            665554332  238888764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0058|consensus

Probab=99.72  E-value=2e-17  Score=144.93  Aligned_cols=114  Identities=21%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNP   85 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P   85 (137)
                      ..+++-|+.|||.++.. ...    .++  ...     -+.+.+..+  |.+...+.+..+||||||||++|||||+++|
T Consensus       551 PvLFs~sI~eNI~YG~~-~~t----~e~--i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P  623 (716)
T KOG0058|consen  551 PVLFSGSIRENIAYGLD-NAT----DEE--IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP  623 (716)
T ss_pred             ceeecccHHHHHhcCCC-CCC----HHH--HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence            34567899999999864 111    011  211     122334433  3444566778899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhcCceEEe
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      .||||||.||+||..+...+-+.+    .+-||++-.|+..=++.|  |++.++
T Consensus       624 ~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~A--d~Ivvi  675 (716)
T KOG0058|consen  624 RVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHA--DQIVVI  675 (716)
T ss_pred             CEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhc--cEEEEE
Confidence            999999999999999877665543    367999866666655544  455444

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.72  E-value=4.8e-17  Score=153.38  Aligned_cols=117  Identities=16%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhH-HHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAG-SCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      ++++ .|+++|+.++..... ...  .. .. .....+.++.+...  ...+.++.+||||||||++||||++.+|+++|
T Consensus       497 ~l~~-~Ti~eNI~~g~~~~~-~~~--~~-~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ill  571 (1490)
T TIGR01271       497 WIMP-GTIKDNIIFGLSYDE-YRY--TS-VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL  571 (1490)
T ss_pred             ccCC-ccHHHHHHhccccch-HHH--HH-HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence            4454 699999998742110 000  00 00 11123334443322  23466789999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEec
Q psy317           90 FDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |||||+|||+.....+++..     .+.||+++||..+.+..  .|+++++.
T Consensus       572 LDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~--ad~ii~l~  621 (1490)
T TIGR01271       572 LDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK--ADKILLLH  621 (1490)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh--CCEEEEEE
Confidence            99999999999999998742     37799996666555443  38998875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.72  E-value=2.7e-17  Score=155.08  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+-|+++|+....     .     .  .++++.+.++.+|+.+...           ....+||||||||++|
T Consensus      1297 IpQdp~LF~GTIR~NLdp~~-----~-----~--tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271      1297 IPQKVFIFSGTFRKNLDPYE-----Q-----W--SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred             EeCCCccCccCHHHHhCccc-----C-----C--CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence            46666666789999996321     0     1  1345566777777654322           2345799999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+.+.++    +.||++.+|+.+.+..  -|+|++|.+
T Consensus      1365 ARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~--~DrIlvL~~ 1426 (1490)
T TIGR01271      1365 ARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE--CQQFLVIEG 1426 (1490)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence            999999999999999999999999888877655    5699996666544332  299998864

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3.5e-17  Score=124.57  Aligned_cols=90  Identities=22%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccc------eee
Q psy317           43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT------KVD  115 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~------~v~  115 (137)
                      +.+.+.+||+.+.++. ..|..|..+|||||||+.|||-|++.|+++++||||.|||...+..+++.++|.      .+.
T Consensus       127 iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v  206 (258)
T COG4107         127 IRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV  206 (258)
T ss_pred             HHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence            5667888999999975 458899999999999999999999999999999999999999999999987754      666


Q ss_pred             eeccccchhhhhhc--CceEEe
Q psy317          116 YTGNRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~  135 (137)
                      +   .|||+..|.=  +|..++
T Consensus       207 i---VTHDl~VarLla~rlmvm  225 (258)
T COG4107         207 I---VTHDLAVARLLADRLMVM  225 (258)
T ss_pred             E---EechhHHHHHhhhcceee
Confidence            7   8999998865  555543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.71  E-value=5.5e-17  Score=153.68  Aligned_cols=118  Identities=22%  Similarity=0.236  Sum_probs=89.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHh---cCCCEEE
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELV---NNPPIMF   89 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~---~~P~iLl   89 (137)
                      .+...|+.|++.++..-.. . +.....+..+++ ++|+.+|+.+. .++++.+|||||+||++||+||+   .+|+++|
T Consensus       759 ~~~~~tI~evL~mtv~ea~-~-~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLI  835 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAE-K-FFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYV  835 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHH-H-cccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence            4677899999988743111 1 111111144455 58999999886 79999999999999999999998   6999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |||||+|||+.++..+++.+.     |.||++++|..+.+  ...|++++|.
T Consensus       836 LDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i--~~aDrVi~L~  885 (1809)
T PRK00635        836 LDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV--KVADYVLELG  885 (1809)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCEEEEEc
Confidence            999999999999998887543     77999955555444  1238998873

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.71  E-value=3.1e-17  Score=148.96  Aligned_cols=117  Identities=14%  Similarity=0.179  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHhhhhhhhHHh---hhhc-chhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEE
Q psy317           16 PKKTPLTRMQISNGMMVLAA---MFNQ-SQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIM   88 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~---~~~~-~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iL   88 (137)
                      ..++|.+.+.|...+.....   .... -++..+++. .|+.+||.+. .++++.+|||||+|||.||+||+.+|  +++
T Consensus       435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll  513 (943)
T PRK00349        435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  513 (943)
T ss_pred             hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            45788888776443211100   0000 011344553 7889999876 79999999999999999999999997  999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      ||||||+|||+..+..+++.+.     |.||++++|..+.+.  ..|+|++|
T Consensus       514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~--~aD~vi~L  563 (943)
T PRK00349        514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR--AADYIVDI  563 (943)
T ss_pred             EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence            9999999999999998888543     779999555544432  13999887

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.71  E-value=3.1e-17  Score=125.17  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc-------c-c
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV-------D-T  112 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~-~  112 (137)
                      ..+.++++.   .+..++++++||+|||||++||+|+    +.+|+++||||||+|||+..+..+++.+.       + .
T Consensus        91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~  167 (198)
T cd03276          91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQ  167 (198)
T ss_pred             HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcE
Confidence            456677776   6667889999999999999999999    59999999999999999999987777432       2 3


Q ss_pred             eeeeeccccchhhhhhc-CceEEec
Q psy317          113 KVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus       113 ~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      +|++   .+|++..+.. |+|-++-
T Consensus       168 ~iii---~th~~~~i~~~d~v~~~~  189 (198)
T cd03276         168 FIFI---TPQDISGLASSDDVKVFR  189 (198)
T ss_pred             EEEE---ECCcccccccccceeEEE
Confidence            7888   5677777777 8887763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PTZ00243 ABC transporter; Provisional

Probab=99.71  E-value=4.9e-17  Score=153.82  Aligned_cols=115  Identities=19%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I   77 (137)
                      -|+...+.+-|+++|+..+..     .       .++++.+.++.+|+.+.           ......+||||||||++|
T Consensus      1389 VpQdp~LF~gTIreNIdp~~~-----~-------sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243       1389 IPQDPVLFDGTVRQNVDPFLE-----A-------SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred             ECCCCccccccHHHHhCcccC-----C-------CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence            356666667799999964211     0       12345566666666443           233457899999999999


Q ss_pred             HHHHhcC-CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNN-PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~-P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++ |+|||||||||+||+.+...+.+.+.    +.||++.+|+.|-+..  .|+|++|.+
T Consensus      1457 ARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~--~DrIlVLd~ 1519 (1560)
T PTZ00243       1457 ARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ--YDKIIVMDH 1519 (1560)
T ss_pred             HHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh--CCEEEEEEC
Confidence            9999995 89999999999999999888776543    6699996666655433  299988864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.70  E-value=5.5e-17  Score=153.20  Aligned_cols=114  Identities=17%  Similarity=0.099  Sum_probs=82.0

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      -|++..+.+-|+++|+.....     .       .++.+.+.++..|+           +........+||||||||++|
T Consensus      1365 VpQdp~LF~gTIr~NLdp~~~-----~-------sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~L 1432 (1522)
T TIGR00957      1365 IPQDPVLFSGSLRMNLDPFSQ-----Y-------SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCL 1432 (1522)
T ss_pred             ECCCCcccCccHHHHcCcccC-----C-------CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHH
Confidence            466666666799999973211     0       11233444555544           333444557899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+.+.++    +.||++.+|+   +.-... |+|+++.+
T Consensus      1433 ARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHR---l~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957      1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR---LNTIMDYTRVIVLDK 1494 (1522)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC---HHHHHhCCEEEEEEC
Confidence            999999999999999999999999887776554    5699995554   444444 99998864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=5.1e-17  Score=129.91  Aligned_cols=93  Identities=24%  Similarity=0.248  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeee
Q psy317           43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDY  116 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~  116 (137)
                      ..++.+.+.+.++++...+.+++.||-|||.|+.||.||.++|++|+|||||-|||...+..+.+.++      +.||++
T Consensus       133 F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll  212 (325)
T COG4586         133 FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL  212 (325)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence            45678888999999999999999999999999999999999999999999999999999998877544      789999


Q ss_pred             eccccchhhhhhcCceEEec
Q psy317          117 TGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |||.-.|+++ .-+||+.|+
T Consensus       213 TTH~~~di~~-lc~rv~~I~  231 (325)
T COG4586         213 TTHIFDDIAT-LCDRVLLID  231 (325)
T ss_pred             EecchhhHHH-hhhheEEee
Confidence            7777777653 337777764

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.69  E-value=1.5e-16  Score=144.18  Aligned_cols=85  Identities=20%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             HHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317           49 EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR  120 (137)
Q Consensus        49 ~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~  120 (137)
                      +.|..+||... .++++.+|||||+||+.||++|+.+|  +++||||||+|||+..+..+++.+.     |.||++++|.
T Consensus       469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd  548 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD  548 (924)
T ss_pred             HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            35788899776 69999999999999999999999986  8999999999999999998888543     6799995555


Q ss_pred             cchhhhhhcCceEEe
Q psy317          121 TQNLQQTIRNEVCLI  135 (137)
Q Consensus       121 ~~~~~~~~~~~~~~~  135 (137)
                      .+.+.  ..|+|++|
T Consensus       549 ~~~i~--~aD~vi~L  561 (924)
T TIGR00630       549 EETIR--AADYVIDI  561 (924)
T ss_pred             HHHHh--hCCEEEEe
Confidence            54442  24999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.69  E-value=1.7e-16  Score=144.20  Aligned_cols=106  Identities=19%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE   92 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE   92 (137)
                      ++|+.|++.+...+.        .  . .+..+.|+.+||.. ..++++.+|||||+||+.||++|+.+|   +++||||
T Consensus       791 ~ltv~E~l~~f~~~~--------~--i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE  859 (943)
T PRK00349        791 DMTVEEALEFFEAIP--------K--I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE  859 (943)
T ss_pred             cCcHHHHHHHHHhch--------h--h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC
Confidence            478888887643211        1  2 23457899999986 478999999999999999999999999   9999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      ||+|||+..+..+++.+.     |.||++++|..+.+.  ..|+++.|
T Consensus       860 PtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~--~aD~ii~L  905 (943)
T PRK00349        860 PTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK--TADWIIDL  905 (943)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH--hCCEEEEe
Confidence            999999999998877543     679999555555442  23888877

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.69  E-value=7.1e-17  Score=139.19  Aligned_cols=77  Identities=25%  Similarity=0.341  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeeeeccc
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~~~~~  120 (137)
                      +.++..+|..+|+... ++++++||||||.||++|+||..+|++|||||||+.||..+..++-+.+.   | ||++.||.
T Consensus       132 e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHD  209 (530)
T COG0488         132 EARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHD  209 (530)
T ss_pred             HHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            3577888999999877 99999999999999999999999999999999999999999999988775   5 89995654


Q ss_pred             cc
Q psy317          121 TQ  122 (137)
Q Consensus       121 ~~  122 (137)
                      -|
T Consensus       210 R~  211 (530)
T COG0488         210 RY  211 (530)
T ss_pred             HH
Confidence            33

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.69  E-value=9.3e-17  Score=123.18  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317           51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD  115 (137)
Q Consensus        51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~  115 (137)
                      +...++....++++.+||+|||||++||+|++.          +|+++||||||++||+..+..+.+.+.     +.||+
T Consensus       108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii  187 (213)
T cd03279         108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG  187 (213)
T ss_pred             hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            455557778899999999999999999999985          578999999999999999998876433     66999


Q ss_pred             eeccccchhhhhhc--CceEEec
Q psy317          116 YTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      ++||.   +..+..  ++++++.
T Consensus       188 ~itH~---~~~~~~~~~~i~~~~  207 (213)
T cd03279         188 VISHV---EELKERIPQRLEVIK  207 (213)
T ss_pred             EEECc---hHHHHhhCcEEEEEe
Confidence            95554   444444  7777664

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.68  E-value=1.2e-16  Score=116.77  Aligned_cols=68  Identities=32%  Similarity=0.437  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+||+||++||+|++.+|++++|||||+|||+.++..+.+.+.     +.+++++   +|++.....  |+++++++
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~---sh~~~~~~~~~d~i~~l~~  155 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV---THDPELAELAADRVIVLKD  155 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHhCCEEEEEeC
Confidence            99999999999999999999999999999999999998888544     3689994   555555444  88888764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=99.68  E-value=1.5e-16  Score=145.84  Aligned_cols=116  Identities=21%  Similarity=0.251  Sum_probs=77.0

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHH-----HHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFI-----SEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNN   84 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~   84 (137)
                      ...+.+-|++||+.+|.. ..    +..+  ..+.+     -+.+..+  |++.....+..+||||||||++||||++++
T Consensus      1072 EP~LF~~TIrENI~YG~~-~v----s~~e--Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1072 EPVLFNGTIRENIAYGSE-EV----SEEE--IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred             CchhhcccHHHHHhccCC-CC----CHHH--HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence            344567899999998821 11    1111  22111     1122222  444455667789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |+||||||.||+||..+.+.+=+.+.    |.|-++..|+..-|+-|  |.++++.
T Consensus      1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqna--D~I~Vi~ 1198 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNA--DVIAVLK 1198 (1228)
T ss_pred             CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcC--CEEEEEE
Confidence            99999999999999998765544333    55677766777655543  4555543

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.68  E-value=1.7e-16  Score=123.09  Aligned_cols=81  Identities=21%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             cCCCcccCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhh
Q psy317           54 LGLQEHKTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        54 lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~  125 (137)
                      +++....++++..||||||||++||+|++.    +|+++|+||||+|||+..+..+++.+.    +.+|++++|..+ +.
T Consensus       146 ~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~  224 (243)
T cd03272         146 TNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LL  224 (243)
T ss_pred             hhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH
Confidence            344445678899999999999999999973    689999999999999999998887544    456777666633 22


Q ss_pred             hhhcCceEEec
Q psy317          126 QTIRNEVCLIS  136 (137)
Q Consensus       126 ~~~~~~~~~~~  136 (137)
                       ...|++++|+
T Consensus       225 -~~~d~i~~l~  234 (243)
T cd03272         225 -EVADKFYGVK  234 (243)
T ss_pred             -hhCCEEEEEE
Confidence             2348888874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.66  E-value=5.1e-16  Score=140.82  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=73.0

Q ss_pred             HHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317           46 FISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVN---NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY  116 (137)
Q Consensus        46 ~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~---~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~  116 (137)
                      +..++|+.+||.. ..++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+++.+.     |.||++
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv  886 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV  886 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3457899999986 4789999999999999999999997   599999999999999999998887543     779999


Q ss_pred             eccccchhhhhhcCceEEe
Q psy317          117 TGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~  135 (137)
                      ++|..+.+.  ..|+++.|
T Consensus       887 i~H~~~~i~--~aD~ii~L  903 (924)
T TIGR00630       887 IEHNLDVIK--TADYIIDL  903 (924)
T ss_pred             EeCCHHHHH--hCCEEEEe
Confidence            555555442  13888887

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=4.3e-16  Score=120.07  Aligned_cols=87  Identities=21%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             HHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecc
Q psy317           48 SEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGN  119 (137)
Q Consensus        48 ~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~  119 (137)
                      .++++.+++.+..++++..||+|||||++||+|++.    +|+++++||||+|||+.++..+++.+.    +.++++.||
T Consensus       109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~  188 (212)
T cd03274         109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISL  188 (212)
T ss_pred             CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence            556778888888899999999999999999999974    589999999999999999998888554    457777665


Q ss_pred             ccchhhhhhcCceEEec
Q psy317          120 RTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       120 ~~~~~~~~~~~~~~~~~  136 (137)
                      .. .+ ....|+++++.
T Consensus       189 ~~-~~-~~~~d~v~~~~  203 (212)
T cd03274         189 RN-NM-FELADRLVGIY  203 (212)
T ss_pred             cH-HH-HHhCCEEEEEE
Confidence            42 11 22239988874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=1.6e-15  Score=118.76  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHcCCCcc----------------------cCccCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCC
Q psy317           44 SCFISEILDTLGLQEH----------------------KTTMTSNLSGGQKKRLSIALELVNN----PPIMFFDEPTSPL   97 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~----------------------~~~~~~~LSgGqkqrv~IArAL~~~----P~iLlLDEPtsgL   97 (137)
                      .+.++++++.+|+...                      .++++..||+|||||++||+|++.+    |+++||||||+||
T Consensus       111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L  190 (247)
T cd03275         111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL  190 (247)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence            3456788888888421                      1234589999999999999999875    8999999999999


Q ss_pred             CHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           98 HKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        98 D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      |+..+..+.+.+.     |.+|+++||..+-+  ...|+++++.
T Consensus       191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~--~~~d~i~~~~  232 (247)
T cd03275         191 DNTNVGKVASYIREQAGPNFQFIVISLKEEFF--SKADALVGVY  232 (247)
T ss_pred             CHHHHHHHHHHHHHhccCCcEEEEEECCHHHH--hhCCeEEEEE
Confidence            9999987777443     56899966653322  2238988864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=9e-16  Score=116.28  Aligned_cols=93  Identities=20%  Similarity=0.331  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317           43 GSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY  116 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~  116 (137)
                      ...++..+|.++++.+. ..-.|.++|||+||||.|||+++.+=+||+|||||+.||..++..+.+.+.     |..++ 
T Consensus       128 a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv-  206 (235)
T COG4778         128 ARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV-  206 (235)
T ss_pred             HHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE-
Confidence            45678899999999764 477899999999999999999999999999999999999999998888655     44443 


Q ss_pred             eccccchhhhhhcCceEEec
Q psy317          117 TGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ..--+++++++..||.+-.+
T Consensus       207 GIFHDeevre~vadR~~~~~  226 (235)
T COG4778         207 GIFHDEEVREAVADRLLDVS  226 (235)
T ss_pred             EeeccHHHHHHHhhheeecc
Confidence            22367788888888876543

>KOG0054|consensus

Probab=99.62  E-value=1.5e-15  Score=141.25  Aligned_cols=113  Identities=19%  Similarity=0.225  Sum_probs=86.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA   78 (137)
                      |+.....+-|++|||.||..+            .+++.++.++...|+.           ....+.-+||||||||+++|
T Consensus       588 ~Q~pWI~ngTvreNILFG~~~------------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA  655 (1381)
T KOG0054|consen  588 PQQPWIQNGTVRENILFGSPY------------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA  655 (1381)
T ss_pred             ccccHhhCCcHHHhhhcCccc------------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence            444456678999999987421            2345555666555532           23557788999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc-CceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||+-++.+|+|||.|+|++|......+++.     ++++|+++   .||.++.-.. |.++++.|
T Consensus       656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL---VTHql~~L~~ad~Iivl~~  717 (1381)
T KOG0054|consen  656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL---VTHQLQFLPHADQIIVLKD  717 (1381)
T ss_pred             HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE---EeCchhhhhhCCEEEEecC
Confidence            999999999999999999999999999984     55789999   5555655554 88887764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.62  E-value=1.4e-15  Score=144.33  Aligned_cols=84  Identities=24%  Similarity=0.242  Sum_probs=70.5

Q ss_pred             HHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317           50 ILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT  121 (137)
Q Consensus        50 ~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~  121 (137)
                      .|..+||... .++.+.+|||||+||+.||+||+.+|  +++||||||+|||+..+..+++.+.     |.||++   .+
T Consensus       459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIv---Ve  535 (1809)
T PRK00635        459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL---VE  535 (1809)
T ss_pred             HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEE---Ee
Confidence            4667899876 68999999999999999999999999  8999999999999999998877544     779999   55


Q ss_pred             chhhhhh-cCceEEec
Q psy317          122 QNLQQTI-RNEVCLIS  136 (137)
Q Consensus       122 ~~~~~~~-~~~~~~~~  136 (137)
                      ||+.... .|+|++|.
T Consensus       536 Hd~~vi~~aDrVi~L~  551 (1809)
T PRK00635        536 HDEQMISLADRIIDIG  551 (1809)
T ss_pred             CcHHHHHhCCEEEEEc
Confidence            5555222 29999884

>KOG0065|consensus

Probab=99.60  E-value=4.5e-16  Score=143.22  Aligned_cols=110  Identities=26%  Similarity=0.355  Sum_probs=91.6

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC----CCHHHHHHHHHHHHHhcCC-
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN----LSGGQKKRLSIALELVNNP-   85 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~----LSgGqkqrv~IArAL~~~P-   85 (137)
                      ++-+.+.+||+|.+.+...++.....+.++  ..+.++++++.++|+++++..++.    ||..||||+.||--|+.+| 
T Consensus       872 ~DiH~~~~TVrESL~fSA~LRlp~~v~~~e--k~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~  949 (1391)
T KOG0065|consen  872 QDIHSPELTVRESLRFSAALRLPKEVSDEE--KYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS  949 (1391)
T ss_pred             ccccCcccchHHHHHHHHHHcCCCcCCHHH--HHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence            345678999999999988766433222222  457899999999999888887766    9999999999999999999 


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ  122 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~  122 (137)
                      -||+|||||||||..+.-.+++.++     |-+|+-|.|-+.
T Consensus       950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS  991 (1391)
T KOG0065|consen  950 SILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS  991 (1391)
T ss_pred             eeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            9999999999999999998888766     669998888664

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.58  E-value=2.1e-15  Score=107.04  Aligned_cols=52  Identities=42%  Similarity=0.709  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHcCCCcccCccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317           44 SCFISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~----~~LSgGqkqrv~IArAL~~~P~iLlLDEPts   95 (137)
                      ..++.++++.+++....++.+    ..||+|||||++||+||+.+|+++|||||||
T Consensus        82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            345777888888876555555    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.58  E-value=4.2e-15  Score=113.80  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             CccCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHhHH-HHHHhhc------cceeeeeccccchhhhh
Q psy317           61 TTMTSNLSGGQKKR------LSIALELVNNPPIMFFDEPTSPLHKAEFT-PKYERKV------DTKVDYTGNRTQNLQQT  127 (137)
Q Consensus        61 ~~~~~~LSgGqkqr------v~IArAL~~~P~iLlLDEPtsgLD~~~~~-~i~~~~~------~~~v~~~~~~~~~~~~~  127 (137)
                      ++++..||+||+||      ++||+|++.+|+++|+||||++||+..+. .+.+.+.      +.+|+++||..+.+.  
T Consensus       110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~--  187 (204)
T cd03240         110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD--  187 (204)
T ss_pred             hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh--
Confidence            77899999999996      78999999999999999999999999988 7776442      568999776544332  


Q ss_pred             hcCceEEec
Q psy317          128 IRNEVCLIS  136 (137)
Q Consensus       128 ~~~~~~~~~  136 (137)
                      ..|+++.|.
T Consensus       188 ~~d~i~~l~  196 (204)
T cd03240         188 AADHIYRVE  196 (204)
T ss_pred             hCCEEEEEe
Confidence            238888774

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.58  E-value=6.9e-15  Score=126.94  Aligned_cols=107  Identities=23%  Similarity=0.332  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ++.|+.+++.-..     .    ..  .+..+...|..|++.. ...++++.||||||.|+.+|+.++.+|-+|||||||
T Consensus       399 ~~~t~~d~l~~~~-----~----~~--~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT  467 (530)
T COG0488         399 PDKTVLEELSEGF-----P----DG--DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT  467 (530)
T ss_pred             ccCcHHHHHHhhC-----c----cc--cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence            5567777775321     0    11  2456788999999964 468899999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEec
Q psy317           95 SPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +.||..+++.+-+.+.  ..||+++   .||=.+.-+  ++++++.
T Consensus       468 NhLDi~s~~aLe~aL~~f~Gtvl~V---SHDr~Fl~~va~~i~~~~  510 (530)
T COG0488         468 NHLDIESLEALEEALLDFEGTVLLV---SHDRYFLDRVATRIWLVE  510 (530)
T ss_pred             ccCCHHHHHHHHHHHHhCCCeEEEE---eCCHHHHHhhcceEEEEc
Confidence            9999999999988877  5699994   455555444  7777664

>KOG0062|consensus

Probab=99.54  E-value=1.8e-14  Score=122.89  Aligned_cols=77  Identities=25%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      .+.+.++|..+|+.... .++.++||||.|-|+++||||..+||||||||||+.||..+..++-+.+.  ..|++++||.
T Consensus       175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHD  254 (582)
T KOG0062|consen  175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHD  254 (582)
T ss_pred             HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEecc
Confidence            34455589999997655 67789999999999999999999999999999999999999999999887  6689997764

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.53  E-value=6.8e-14  Score=119.39  Aligned_cols=125  Identities=19%  Similarity=0.195  Sum_probs=81.2

Q ss_pred             hccCCCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317            8 SSIWDSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNN   84 (137)
Q Consensus         8 ~~~~~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~   84 (137)
                      -.|++.-++.=|+.|||.=+. ........   +.+....+.++.-.+  |.+.....-...||||||||+++||||..+
T Consensus       414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIi---eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~  490 (580)
T COG4618         414 YLPQDVELFDGTIAENIARFGEEADPEKVI---EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD  490 (580)
T ss_pred             cCcccceecCCcHHHHHHhccccCCHHHHH---HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence            356666566789999996221 11000000   000011122333322  233333444577999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHH-----hhccceeeeeccccchhhhhhcCceEEecC
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYE-----RKVDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |.+++||||-|+||......+.+     +.+|.++++.+|+..-++.+  |.|.+++|
T Consensus       491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~--Dkilvl~~  546 (580)
T COG4618         491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV--DKILVLQD  546 (580)
T ss_pred             CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc--ceeeeecC
Confidence            99999999999999999887777     34588999988887655433  66666654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.1e-13  Score=108.27  Aligned_cols=126  Identities=21%  Similarity=0.145  Sum_probs=93.5

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccC-CCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMT-SNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~-~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      -.|.=++..++.+.+..+............+  ..+++++.++.+++.. .++|.+ ..+|||+|+|.+|+..++.+|++
T Consensus        88 Q~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl  165 (251)
T COG0396          88 QYPVEIPGVTNSDFLRAAMNARRGARGILPE--FIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL  165 (251)
T ss_pred             cCCccCCCeeHHHHHHHHHHhhhccccccHH--HHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE
Confidence            3445567777777777654321111000012  4668889999999986 678887 56999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      .|||||-||||..+.+.+.+-.+     +.++++-||+..=+.....|.|.++-|
T Consensus       166 ~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~  220 (251)
T COG0396         166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYD  220 (251)
T ss_pred             EEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEEC
Confidence            99999999999999987766332     668999777776666666688887753

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.52  E-value=4.2e-14  Score=108.50  Aligned_cols=90  Identities=24%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCC-CcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317           43 GSCFISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD  115 (137)
Q Consensus        43 ~~~~~~~~L~~lgL-~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~  115 (137)
                      ..+++.+.|+.+|+ .++++-+|..||.||||||++||||+.+|+|+|.||..++||...+.++.+..-      |..-+
T Consensus       125 R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyi  204 (267)
T COG4167         125 RRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYI  204 (267)
T ss_pred             HHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEE
Confidence            45688899999998 578899999999999999999999999999999999999999999999888432      55666


Q ss_pred             eeccccchhhhhhc--CceEEe
Q psy317          116 YTGNRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~  135 (137)
                      |   +++++..-+-  |.|++.
T Consensus       205 Y---V~QhlG~iKHi~D~viVM  223 (267)
T COG4167         205 Y---VTQHIGMIKHISDQVLVM  223 (267)
T ss_pred             E---EechhhHhhhhcccEEEE
Confidence            7   4555554443  555554

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=5.8e-14  Score=110.48  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      -.+-|++|.+||+.+...+.   ++...+  .+++++++.+--+|.++.+.|+.++|.||+-|+++|.|...+|+|||+|
T Consensus        98 ~Gf~pelTGreNi~l~~~~~---G~~~~e--i~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD  172 (249)
T COG1134          98 AGFDPELTGRENIYLRGLIL---GLTRKE--IDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD  172 (249)
T ss_pred             cCCCcccchHHHHHHHHHHh---CccHHH--HHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe
Confidence            34678999999998764332   222334  7788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |-.+.-|+.-+++-.+++     .+.||++   ..||++...+  |+++.|+
T Consensus       173 EvlavGD~~F~~K~~~rl~e~~~~~~tiv~---VSHd~~~I~~~Cd~~i~l~  221 (249)
T COG1134         173 EVLAVGDAAFQEKCLERLNELVEKNKTIVL---VSHDLGAIKQYCDRAIWLE  221 (249)
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhcCeeEEEe
Confidence            999999998877555533     3668889   7788888888  8888876

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.52  E-value=2.9e-14  Score=110.00  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------c-ceeeeec-cccchhh
Q psy317           58 EHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV------D-TKVDYTG-NRTQNLQ  125 (137)
Q Consensus        58 ~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~-~~v~~~~-~~~~~~~  125 (137)
                      +..+..+.+||+||||++.+++++    +.+|+++|+||||+|||+..+..+++.+.      | .++++.| |..|++.
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~  197 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN  197 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence            345667899999999998877554    58999999999999999999998887542      2 3577755 4456666


Q ss_pred             hhhcCceEEecC
Q psy317          126 QTIRNEVCLISD  137 (137)
Q Consensus       126 ~~~~~~~~~~~~  137 (137)
                      .+-+.+|++|++
T Consensus       198 ~~~~~~v~~l~~  209 (213)
T cd03277         198 YHEKMTVLCVYN  209 (213)
T ss_pred             ccCceEEEEEec
Confidence            665578888864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.47  E-value=1.9e-13  Score=102.84  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           67 LSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        67 LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ||+|||||++||++++    .+|+++|+|||+++||+..+..+.+.+.     +.+++++||..+.+.  ..|+++.|.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~--~adrvi~i~  171 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE--NADKLIGVL  171 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh--hCCeEEEEE
Confidence            9999999999999996    6999999999999999999998877544     468999777655442  248888764

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0927|consensus

Probab=99.46  E-value=1.5e-13  Score=117.87  Aligned_cols=78  Identities=26%  Similarity=0.335  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cc-eeeeec
Q psy317           43 GSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DT-KVDYTG  118 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~-~v~~~~  118 (137)
                      .+.++.++|..+|.. +..++.+.+||||++.|+++||+|..+|++|+|||||++||+.+...+-+.+.  +. ++.+++
T Consensus       197 ~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~s  276 (614)
T KOG0927|consen  197 FEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVS  276 (614)
T ss_pred             HHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEe
Confidence            345677788888864 56689999999999999999999999999999999999999999998888766  22 566766


Q ss_pred             cc
Q psy317          119 NR  120 (137)
Q Consensus       119 ~~  120 (137)
                      |.
T Consensus       277 h~  278 (614)
T KOG0927|consen  277 HS  278 (614)
T ss_pred             cc
Confidence            65

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.45  E-value=2.5e-13  Score=116.57  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHhHHHHHHhhc---cceeeeeccccchhhhh
Q psy317           62 TMTSNLSGGQKKRLSIALELV----------NNPPIMFFDEPT-SPLHKAEFTPKYERKV---DTKVDYTGNRTQNLQQT  127 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~  127 (137)
                      ..+..|||||+||++||+||+          .+|+++|||||| ++||+..+..+++.+.   +.+|+++||..+.... 
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~-  542 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK-  542 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh-
Confidence            357899999999999999988          599999999998 7899999998877554   5689998888554432 


Q ss_pred             hcCceEEec
Q psy317          128 IRNEVCLIS  136 (137)
Q Consensus       128 ~~~~~~~~~  136 (137)
                       .++++.+.
T Consensus       543 -~d~~~~l~  550 (562)
T PHA02562        543 -FDRHLKME  550 (562)
T ss_pred             -hhcEEEEE
Confidence             27777664

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.45  E-value=2.6e-13  Score=115.19  Aligned_cols=124  Identities=17%  Similarity=0.253  Sum_probs=97.0

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhh--HHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMV--LAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      ...+.+.+|+.+|+.+......  .....-...+..+.+.++++.|++. .-...++.+||||++||+-+||-|.++|++
T Consensus       345 ~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~l  424 (501)
T COG3845         345 GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDL  424 (501)
T ss_pred             cCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCE
Confidence            4457889999999988753210  0000011122667889999999996 345677899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||+-+||-|||..+.+.+.+++.     |..|++   ...|+++...  ||+.++++
T Consensus       425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLL---iS~dLDEil~lsDrIaVi~~  478 (501)
T COG3845         425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYE  478 (501)
T ss_pred             EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEE---EehhHHHHHHhhheeeeeeC
Confidence            99999999999999998888655     779998   6677777777  99988864

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.8e-13  Score=114.82  Aligned_cols=119  Identities=21%  Similarity=0.272  Sum_probs=78.8

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      -|++..+++-|.+.|+.++..-.     +.++  ...     .+....+.+  |++.....+.-.|||||||||+|||++
T Consensus       342 VPQDtvLFNDti~yni~ygr~~a-----t~ee--v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~i  414 (497)
T COG5265         342 VPQDTVLFNDTIAYNIKYGRPDA-----TAEE--VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTI  414 (497)
T ss_pred             CcccceehhhhHHHHHhccCccc-----cHHH--HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHH
Confidence            46777888889999998764211     0011  111     111222221  233334445566999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ..+|+||+|||.||+||..+.+.+-..++    |-|-++-   -|-+.-..+ |++++|++
T Consensus       415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvi---ahrlsti~~adeiivl~~  472 (497)
T COG5265         415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI---AHRLSTIIDADEIIVLDN  472 (497)
T ss_pred             hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEE---eehhhhccCCceEEEeeC
Confidence            99999999999999999999887776555    4455553   344443344 88888764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.45  E-value=2.3e-13  Score=118.51  Aligned_cols=111  Identities=23%  Similarity=0.277  Sum_probs=87.0

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc------CCCCCHHHHHHHHHHHHHh
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM------TSNLSGGQKKRLSIALELV   82 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~------~~~LSgGqkqrv~IArAL~   82 (137)
                      .|+...+|.=|.+|-+.++....       ..  .++.+.++|..+||++..++.      -..||+|||||+++||.|.
T Consensus       461 lpQ~PY~p~GtLre~l~YP~~~~-------~~--~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL  531 (604)
T COG4178         461 LPQRPYLPQGTLREALCYPNAAP-------DF--SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL  531 (604)
T ss_pred             ecCCCCCCCccHHHHHhCCCCCC-------CC--ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence            45556667778888887653211       01  245678899999998765443      3569999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhh
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~  128 (137)
                      ++|++++|||.|++||+.+...+++.++    +.||+..+|++.--++.-
T Consensus       532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~  581 (604)
T COG4178         532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHS  581 (604)
T ss_pred             cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHh
Confidence            9999999999999999999999999776    569998899887655543

>KOG0062|consensus

Probab=99.44  E-value=3.5e-13  Score=115.13  Aligned_cols=92  Identities=25%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317           43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN  119 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~  119 (137)
                      ..+.+++-+..||+.. .+.....+||||||=||.+|.+...+|-+|+|||||+.||..+...+.+.++  +.+|.+   
T Consensus       458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~---  534 (582)
T KOG0062|consen  458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVL---  534 (582)
T ss_pred             CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEE---
Confidence            3466778899999975 4566689999999999999999999999999999999999999999888777  558888   


Q ss_pred             ccchhhhhhc--CceEEecC
Q psy317          120 RTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       120 ~~~~~~~~~~--~~~~~~~~  137 (137)
                      .+||.++...  .++++..|
T Consensus       535 VSHd~~fi~~~c~E~Wvve~  554 (582)
T KOG0062|consen  535 VSHDEEFISSLCKELWVVED  554 (582)
T ss_pred             EECcHHHHhhcCceeEEEcC
Confidence            6778888777  77777654

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.42  E-value=4.4e-13  Score=106.69  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317           65 SNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ..|||||+||+++|++++.    +|+++|+||||++||+..+..+++.+.    +.+++++||..+-+  ...|+++.+.
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~--~~~d~~~~l~  246 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA--AMADNHFLVE  246 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH--HhcCcEEEEE
Confidence            3499999999999997654    999999999999999999998887554    56899977665522  2337777764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.42  E-value=1.1e-13  Score=108.35  Aligned_cols=86  Identities=22%  Similarity=0.366  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHcCCCccc---CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccce
Q psy317           43 GSCFISEILDTLGLQEHK---TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTK  113 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~---~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~  113 (137)
                      .+.++-++|.++|+.+..   ..+|.+|.-|+.|+|+||.|++.+|++||.||||+++++..+.++++.+      .+.+
T Consensus       132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt  211 (330)
T COG4170         132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT  211 (330)
T ss_pred             hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence            345778899999998765   5789999999999999999999999999999999999999999998843      3779


Q ss_pred             eeeeccccchhhhhh
Q psy317          114 VDYTGNRTQNLQQTI  128 (137)
Q Consensus       114 v~~~~~~~~~~~~~~  128 (137)
                      |+++||....+.+-.
T Consensus       212 ILL~s~Dl~~is~W~  226 (330)
T COG4170         212 ILLISHDLQMISQWA  226 (330)
T ss_pred             EEEEcccHHHHHHHh
Confidence            999887777666543

>KOG0927|consensus

Probab=99.42  E-value=2.4e-13  Score=116.62  Aligned_cols=81  Identities=25%  Similarity=0.311  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      .+.++.+|.++||.. ....+.++||.|||+||.+|+.++..|.+|+|||||+|||..+...+-+.++  ..+|.+   +
T Consensus       486 ~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~---v  562 (614)
T KOG0927|consen  486 LEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVL---V  562 (614)
T ss_pred             HHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceee---e
Confidence            457888999999985 4577889999999999999999999999999999999999999998888887  447777   4


Q ss_pred             cchhhhh
Q psy317          121 TQNLQQT  127 (137)
Q Consensus       121 ~~~~~~~  127 (137)
                      .||+...
T Consensus       563 SHDfrlI  569 (614)
T KOG0927|consen  563 SHDFRLI  569 (614)
T ss_pred             echhhHH
Confidence            5665543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.38  E-value=8.8e-13  Score=111.82  Aligned_cols=87  Identities=26%  Similarity=0.330  Sum_probs=73.2

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR  120 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~  120 (137)
                      ..+++.+.++|.+..++-+++||||+.||++||.|++++.++.++|||+|.||...+....+..+     +.+|++   .
T Consensus       193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViV---V  269 (591)
T COG1245         193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV---V  269 (591)
T ss_pred             cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEE---E
Confidence            46778999999999999999999999999999999999999999999999999998875555333     568888   8


Q ss_pred             cchhhhhhc--CceEEe
Q psy317          121 TQNLQQTIR--NEVCLI  135 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~  135 (137)
                      .||++.-=-  |-|+++
T Consensus       270 EHDLavLD~lsD~vhI~  286 (591)
T COG1245         270 EHDLAVLDYLSDFVHIL  286 (591)
T ss_pred             echHHHHHHhhheeEEE
Confidence            999875322  666654

>TIGR00634 recN DNA repair protein RecN

Probab=99.37  E-value=1.2e-12  Score=113.69  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEe
Q psy317           65 SNLSGGQKKRLSIALELVNN----PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~~----P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ..+||||+||++||++++..    |++||||||++|||+..+..+.+.+.    +.+|+++|   |+.+.+.. |+++++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iT---H~~~~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVT---HLPQVAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEE---ChHHHHHhcCeEEEE
Confidence            46899999999999999985    69999999999999999998887544    67899944   55544444 888887


Q ss_pred             c
Q psy317          136 S  136 (137)
Q Consensus       136 ~  136 (137)
                      .
T Consensus       516 ~  516 (563)
T TIGR00634       516 E  516 (563)
T ss_pred             E
Confidence            5

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.37  E-value=1.5e-12  Score=119.56  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             CcccCccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317           57 QEHKTTMTSNLSGGQKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT  121 (137)
Q Consensus        57 ~~~~~~~~~~LSgGqkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~  121 (137)
                      ....++++.+|||||++|++||+||+.          +|++||+||||+|||+.+...+++.+.     |.+|+++||. 
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~- 1019 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV- 1019 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc-
Confidence            445567899999999999999999985          799999999999999999988877543     5688895554 


Q ss_pred             chhhhhhc--CceEEec
Q psy317          122 QNLQQTIR--NEVCLIS  136 (137)
Q Consensus       122 ~~~~~~~~--~~~~~~~  136 (137)
                        .....+  +++.|+.
T Consensus      1020 --~~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618      1020 --PEFRERIPHRILVKK 1034 (1042)
T ss_pred             --HHHHHhhCCEEEEEE
Confidence              444444  7887764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.35  E-value=2.7e-12  Score=94.71  Aligned_cols=70  Identities=21%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317           65 SNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      .+||+||+||+.+|++|+.    +|+++|+|||++|+|+..+..+.+.+.     +.+++++||..+....+  |+++.+
T Consensus        76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l  153 (162)
T cd03227          76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHI  153 (162)
T ss_pred             eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEE
Confidence            4699999999999999987    789999999999999999987766433     46889966655544322  777766


Q ss_pred             c
Q psy317          136 S  136 (137)
Q Consensus       136 ~  136 (137)
                      .
T Consensus       154 ~  154 (162)
T cd03227         154 K  154 (162)
T ss_pred             E
Confidence            4

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.35  E-value=1.3e-12  Score=110.84  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=72.7

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh---hc---cceeeeecc
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER---KV---DTKVDYTGN  119 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~---~~---~~~v~~~~~  119 (137)
                      ...++++-++|++..++++.+||||+.|||+||.||..+.++.+||||+|.||...+..+-..   ..   +++.++   
T Consensus       435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v---  511 (591)
T COG1245         435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV---  511 (591)
T ss_pred             hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE---
Confidence            455788999999999999999999999999999999999999999999999999988654442   22   567788   


Q ss_pred             ccchhhhhhc--CceEEec
Q psy317          120 RTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       120 ~~~~~~~~~~--~~~~~~~  136 (137)
                      ..||+-..-=  ||+++.+
T Consensus       512 VdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         512 VDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             EecceehhhhhhceEEEEe
Confidence            8888755422  7777654

>PRK10869 recombination and repair protein; Provisional

Probab=99.31  E-value=5.9e-12  Score=109.33  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317           66 NLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      .+||||+||++||++++.    +|+++|+|||++|||......+.+.+.    +.+|++.|   |+.+.|.. |+.|+++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iT---H~~~~~~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVT---HLPQVAGCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEe---cCHHHHHhCCEEEEEe
Confidence            479999999999999997    589999999999999999998888655    45899944   45544434 8888775

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.29  E-value=2e-11  Score=108.91  Aligned_cols=86  Identities=24%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317           45 CFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD  115 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~  115 (137)
                      .+..+.|..+||... +.++..+||||+-||+.+|.-|....   -+.||||||+||......++++-+.     |.||+
T Consensus       800 ~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTVi  879 (935)
T COG0178         800 ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI  879 (935)
T ss_pred             HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            455568889999874 58999999999999999999998877   9999999999999999988877443     77999


Q ss_pred             eeccccchhhhhhc-CceE
Q psy317          116 YTGNRTQNLQQTIR-NEVC  133 (137)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~  133 (137)
                      +   ..|||+..+. |.++
T Consensus       880 V---IEHNLdVIk~AD~II  895 (935)
T COG0178         880 V---IEHNLDVIKTADWII  895 (935)
T ss_pred             E---EecccceEeecCEEE
Confidence            9   8999998776 6554

>KOG0056|consensus

Probab=99.28  E-value=3.2e-12  Score=109.52  Aligned_cols=119  Identities=23%  Similarity=0.245  Sum_probs=75.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHH--HHHHHHHH-HcCCCcc----cCccCCCCCHHHHHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGS--CFISEILD-TLGLQEH----KTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~--~~~~~~L~-~lgL~~~----~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      -|++..+.+-|+..|++++.- .  .  +.++  ..  .++..+=+ .+++.+.    ...+.=.||||+||||+|||++
T Consensus       617 VPQDtvLFNdTI~yNIryak~-~--A--snee--vyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti  689 (790)
T KOG0056|consen  617 VPQDTVLFNDTILYNIRYAKP-S--A--SNEE--VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI  689 (790)
T ss_pred             ccCcceeecceeeeheeecCC-C--C--ChHH--HHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence            467778888999999987641 1  1  0011  21  12222322 2345443    3445566999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ..+|.|++|||.||+||-.+...|-..+.    +-|-++..|+..-+.-  .|.+.+|+
T Consensus       690 LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn--AD~ILvi~  746 (790)
T KOG0056|consen  690 LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN--ADLILVIS  746 (790)
T ss_pred             hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec--ccEEEEEe
Confidence            99999999999999999988776655443    3344444454432221  15555544

>PRK03918 chromosome segregation protein; Provisional

Probab=99.27  E-value=8.1e-12  Score=112.22  Aligned_cols=74  Identities=26%  Similarity=0.328  Sum_probs=57.5

Q ss_pred             CccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc
Q psy317           61 TTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        61 ~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~  129 (137)
                      +.++..|||||++      |+++|++++.+|+++|+||||+|||+..+..+.+.+.     +.+|+++||..+ +. ...
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~-~~~  860 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LK-DAA  860 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HH-HhC
Confidence            3578899999999      5556668889999999999999999999988877542     468999666654 22 224


Q ss_pred             CceEEec
Q psy317          130 NEVCLIS  136 (137)
Q Consensus       130 ~~~~~~~  136 (137)
                      |+++.++
T Consensus       861 d~~~~l~  867 (880)
T PRK03918        861 DYVIRVS  867 (880)
T ss_pred             CeEEEEE
Confidence            8888764

>PRK01156 chromosome segregation protein; Provisional

Probab=99.27  E-value=2.6e-11  Score=109.69  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             HHHHHHHHcCCCc----------------ccCccCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHhHH
Q psy317           46 FISEILDTLGLQE----------------HKTTMTSNLSGGQKKRLSI------ALELVNNPPIMFFDEPTSPLHKAEFT  103 (137)
Q Consensus        46 ~~~~~L~~lgL~~----------------~~~~~~~~LSgGqkqrv~I------ArAL~~~P~iLlLDEPtsgLD~~~~~  103 (137)
                      .+.+++..+|+..                .....+..|||||+++++|      |++++.+|++++|||||+|||+..+.
T Consensus       765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~  844 (895)
T PRK01156        765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT  844 (895)
T ss_pred             HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence            4566777788741                1124688999999999975      58999999999999999999999988


Q ss_pred             HHHHhhc-------c-ceeeeeccccchhhhhhcCceEEec
Q psy317          104 PKYERKV-------D-TKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       104 ~i~~~~~-------~-~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      .+.+.+.       + .+|++.||..+-+.  ..|+++.+.
T Consensus       845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~~--~~d~ii~~~  883 (895)
T PRK01156        845 NLKDIIEYSLKDSSDIPQVIMISHHRELLS--VADVAYEVK  883 (895)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECchHHHH--hcCeEEEEE
Confidence            8766432       2 37999666665432  237777653

>KOG0054|consensus

Probab=99.25  E-value=1.9e-11  Score=114.25  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      -|++....+=|++.|+--.....            ++.+=+.|+..+           |+.....-..++|-||||.+|+
T Consensus      1219 IPQdPvLFsGTvR~NLDPf~e~s------------D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFDEYS------------DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCL 1286 (1381)
T ss_pred             eCCCCceecCccccccCcccccC------------HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHH
Confidence            47778888899999996332111            112223333333           4444444568899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhccceeeeeccccchhhhhhc-CceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKVDTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||.++.+||+|||+||++|+.+-..|=+    ...+-||+-   .-|-+.-.++ |||++|.+
T Consensus      1287 ARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt---IAHRl~TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1287 ARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT---IAHRLNTVMDSDRVLVLDA 1348 (1381)
T ss_pred             HHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE---EeeccchhhhcCeEEEeeC
Confidence            999999999999999999999997544333    344669997   4455555677 99998863

>TIGR00606 rad50 rad50

Probab=99.25  E-value=1.6e-11  Score=115.12  Aligned_cols=68  Identities=22%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             CccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----------ccceeeeeccccchh
Q psy317           61 TTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK----------VDTKVDYTGNRTQNL  124 (137)
Q Consensus        61 ~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----------~~~~v~~~~~~~~~~  124 (137)
                      ...++.|||||+|      |++||+|++.+|++|+|||||+|||+.+...+.+.+          .|.+|+++||..+-+
T Consensus      1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606      1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred             cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence            3455899999999      999999999999999999999999999998765532          256899955555554


Q ss_pred             hhhh
Q psy317          125 QQTI  128 (137)
Q Consensus       125 ~~~~  128 (137)
                      ....
T Consensus      1274 ~~~~ 1277 (1311)
T TIGR00606      1274 ELLG 1277 (1311)
T ss_pred             HHHh
Confidence            4443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066|consensus

Probab=99.23  E-value=2.1e-11  Score=103.70  Aligned_cols=77  Identities=29%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             HHHHHHHHHcCCCcccCc-cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317           45 CFISEILDTLGLQEHKTT-MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT  121 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~-~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~  121 (137)
                      +.++..|-.+||..+++. .+..||||||-||++|---+..|++|||||||++||..+...+.+..+  ..+|+++||..
T Consensus       682 q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDe  761 (807)
T KOG0066|consen  682 QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDE  761 (807)
T ss_pred             HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEeccc
Confidence            456678899999888765 579999999999999999999999999999999999999999988777  55888855543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.23  E-value=4.1e-12  Score=96.54  Aligned_cols=76  Identities=17%  Similarity=0.111  Sum_probs=60.1

Q ss_pred             HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhc--cceeeeeccc
Q psy317           47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKV--DTKVDYTGNR  120 (137)
Q Consensus        47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~--~~~v~~~~~~  120 (137)
                      +.+++..++..+..+...+.+|+||+|+..|+++ +.+|+++|+|||++|+|+..+..++.    .+.  +.+++++||.
T Consensus        72 ~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~  150 (200)
T cd03280          72 FENIFADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY  150 (200)
T ss_pred             ccEEEEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence            3445556666667778889999999999999988 48999999999999999998876643    222  6799997775


Q ss_pred             cchh
Q psy317          121 TQNL  124 (137)
Q Consensus       121 ~~~~  124 (137)
                       +++
T Consensus       151 -~~l  153 (200)
T cd03280         151 -GEL  153 (200)
T ss_pred             -HHH
Confidence             444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.23  E-value=2.9e-11  Score=111.48  Aligned_cols=62  Identities=21%  Similarity=0.247  Sum_probs=55.0

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVN--------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT  121 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~  121 (137)
                      .++++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.+.     |.+|++.||..
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence            457899999999999999999995        899999999999999999998888654     67999977743

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.21  E-value=1.8e-11  Score=111.24  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=59.5

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317           60 KTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE  131 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~  131 (137)
                      .+.++..|||||+++++||++++    .+|+++||||||+|||+..+..+.+.+.    +.+|+++||..|.+.  ..|+
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~--~~d~ 1160 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME--VADQ 1160 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH--Hhhh
Confidence            45678999999999999999984    6789999999999999999988877543    458999777766543  2366


Q ss_pred             eEEe
Q psy317          132 VCLI  135 (137)
Q Consensus       132 ~~~~  135 (137)
                      ++.+
T Consensus      1161 ~~~~ 1164 (1179)
T TIGR02168      1161 LYGV 1164 (1179)
T ss_pred             Heee
Confidence            6544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0065|consensus

Probab=99.19  E-value=2.9e-12  Score=118.47  Aligned_cols=126  Identities=22%  Similarity=0.223  Sum_probs=92.4

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHh-hhhcc-hh-HHHHHHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAA-MFNQS-QA-GSCFISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~-~~~~~-~~-~~~~~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL   81 (137)
                      -++..++.|||+|-+.+....+.... ...-. ++ .....+.+++.+||+.++|..     .+..|||||+||.+|-.+
T Consensus       196 e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~  275 (1391)
T KOG0065|consen  196 EQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML  275 (1391)
T ss_pred             ccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee
Confidence            45678999999999998865543211 11011 00 112467899999998877665     566999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +.+|+++++||+|.|||..+..+++..++      +.|.+++-+  |-...+..  |.||+|++
T Consensus       276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~--Q~s~~~~~lFD~v~lL~e  337 (1391)
T KOG0065|consen  276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL--QPSPEIYDLFDDVILLSE  337 (1391)
T ss_pred             ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEec--cCChHHHHhhhheeeeec
Confidence            99999999999999999999999998766      556665322  22233333  88998875

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.18  E-value=5.6e-12  Score=96.22  Aligned_cols=90  Identities=22%  Similarity=0.424  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHhHHHHHHhhc-----
Q psy317           43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-----NP--PIMFFDEPTSPLHKAEFTPKYERKV-----  110 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~-----~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----  110 (137)
                      ....+.++...++++++..+.+..||||+=|||-+|.....     +|  ++||+|||.++||...+..+...+.     
T Consensus       102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~  181 (248)
T COG4138         102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ  181 (248)
T ss_pred             HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence            34567788899999999999999999999999999987654     34  7999999999999997765544332     


Q ss_pred             cceeeeeccccchhhhhhc--CceEEe
Q psy317          111 DTKVDYTGNRTQNLQQTIR--NEVCLI  135 (137)
Q Consensus       111 ~~~v~~~~~~~~~~~~~~~--~~~~~~  135 (137)
                      |.+|+|+   .||+--+++  ++|.+|
T Consensus       182 G~~vims---~HDLNhTLrhA~~~wLL  205 (248)
T COG4138         182 GLAIVMS---SHDLNHTLRHAHRAWLL  205 (248)
T ss_pred             CcEEEEe---ccchhhHHHHHHHHHHH
Confidence            8899995   456655655  555544

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.18  E-value=7.4e-11  Score=93.65  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhccc-eeeeeccccchhhh
Q psy317           64 TSNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYTGNRTQNLQQ  126 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~-~v~~~~~~~~~~~~  126 (137)
                      ..-+|+||||+++||++|+         .+|+++|+||||++||+..+..+++.+... .+++++|....+..
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~  253 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDA  253 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccc
Confidence            4568999999999999985         799999999999999999999999987533 56676654444443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.12  E-value=4.8e-11  Score=92.68  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHhHHHHH-Hhh---ccceeee
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAEFTPKY-ERK---VDTKVDY  116 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~~~~i~-~~~---~~~~v~~  116 (137)
                      .+++++..+|+.+.   ....+|.|++++..+++++  +++|+++|||||   |+++|+....... +.+   .+.++++
T Consensus        72 ~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vli  148 (222)
T cd03285          72 IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLF  148 (222)
T ss_pred             ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            34567777777644   3688999999999999999  899999999999   9999999887554 443   2679999


Q ss_pred             eccccchhhh
Q psy317          117 TGNRTQNLQQ  126 (137)
Q Consensus       117 ~~~~~~~~~~  126 (137)
                      +||. |++..
T Consensus       149 sTH~-~el~~  157 (222)
T cd03285         149 ATHF-HELTA  157 (222)
T ss_pred             Eech-HHHHH
Confidence            8884 66543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.09  E-value=1.8e-10  Score=105.22  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCce
Q psy317           61 TTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEV  132 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~  132 (137)
                      .+++..||||||++++||++++.    +|+++|||||++|||+..+..+.+.+.    +..++++||....+  ...|++
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~--~~~d~~ 1146 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI--EYADRA 1146 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH--Hhccee
Confidence            34577899999999999999985    789999999999999999998888665    34678866665433  233888


Q ss_pred             EEec
Q psy317          133 CLIS  136 (137)
Q Consensus       133 ~~~~  136 (137)
                      |.+.
T Consensus      1147 ~~~~ 1150 (1164)
T TIGR02169      1147 IGVT 1150 (1164)
T ss_pred             EeEE
Confidence            8763

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.08  E-value=3.3e-10  Score=93.67  Aligned_cols=73  Identities=25%  Similarity=0.328  Sum_probs=57.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc-C
Q psy317           63 MTSNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR-N  130 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~-~  130 (137)
                      ....+|.||||++.||++|+         .+|+++|||||+++||+..+..+++.+.  +..+++|+|...++..... .
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~  349 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA  349 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence            35789999999999999986         7999999999999999999999999875  4588997766555443222 3


Q ss_pred             ceEEe
Q psy317          131 EVCLI  135 (137)
Q Consensus       131 ~~~~~  135 (137)
                      +++.+
T Consensus       350 ~i~~v  354 (361)
T PRK00064        350 KIFHV  354 (361)
T ss_pred             cEEEE
Confidence            45544

>KOG0066|consensus

Probab=99.07  E-value=7.1e-11  Score=100.53  Aligned_cols=78  Identities=23%  Similarity=0.301  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317           43 GSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN  119 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~  119 (137)
                      .+.+++.+|.-+|+.... +++...+|||.|-||++||||...|-+|+|||||+.||.....++=+.+.  ..|.+++||
T Consensus       388 AEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSH  467 (807)
T KOG0066|consen  388 AEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSH  467 (807)
T ss_pred             chhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEec
Confidence            456888999999997654 67778999999999999999999999999999999999999998888888  459999776


Q ss_pred             c
Q psy317          120 R  120 (137)
Q Consensus       120 ~  120 (137)
                      .
T Consensus       468 D  468 (807)
T KOG0066|consen  468 D  468 (807)
T ss_pred             c
Confidence            5

>TIGR00611 recf recF protein

Probab=99.06  E-value=2.8e-10  Score=94.41  Aligned_cols=62  Identities=26%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhh
Q psy317           65 SNLSGGQKKRLSIALELVN---------NPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~  126 (137)
                      ..+|.||||++.||.+|+.         +|+|||||||+++||+..+..+++.+.  |..|++|+|...++..
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~~  346 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLKE  346 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhccc
Confidence            4689999999999999999         999999999999999999999999885  3699998877666543

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.93  E-value=4.2e-10  Score=84.72  Aligned_cols=76  Identities=11%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH----Hhh---ccceeeeec
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY----ERK---VDTKVDYTG  118 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~----~~~---~~~~v~~~~  118 (137)
                      .+++++..++..+..++..+++|+|++|...+.+. +.+|+++|+|||++|+|+.....+.    +.+   .+.+++++|
T Consensus        41 ~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~T  119 (185)
T smart00534       41 VFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFAT  119 (185)
T ss_pred             ccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            44566777888888888899999999984443332 3599999999999999998765543    332   256899977


Q ss_pred             cccc
Q psy317          119 NRTQ  122 (137)
Q Consensus       119 ~~~~  122 (137)
                      |..+
T Consensus       120 H~~~  123 (185)
T smart00534      120 HYHE  123 (185)
T ss_pred             cHHH
Confidence            7763

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.93  E-value=1.6e-09  Score=102.14  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             cCccCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317           60 KTTMTSNLSGGQKKRLS----IALE--------LVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR  120 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~----IArA--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~  120 (137)
                      .++.++.|||||||+++    +|++        +..+|+++||||||+|||+..+..+++.+.  +.+++++|+.
T Consensus      1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~ 1315 (1353)
T TIGR02680      1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSER 1315 (1353)
T ss_pred             hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccc
Confidence            34557999999999996    5655        558999999999999999999999998666  6788887753

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0060|consensus

Probab=98.93  E-value=1.8e-09  Score=93.73  Aligned_cols=108  Identities=19%  Similarity=0.115  Sum_probs=75.6

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc-----------CCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM-----------TSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~-----------~~~LSgGqkqrv~IA   78 (137)
                      |+...++-=|.++.+.++.......  .  +...++++.++|+.+++.+...+-           -..||+|||||++.|
T Consensus       507 PQrPYmt~GTLRdQvIYP~~~~~~~--~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A  582 (659)
T KOG0060|consen  507 PQRPYMTLGTLRDQVIYPLKAEDMD--S--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA  582 (659)
T ss_pred             cCCCCccccchhheeeccCcccccc--c--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence            4444455557778877652111010  1  111345677788888776543321           356999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT  121 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~  121 (137)
                      |-+.++|++-||||-||++|......++++.+  |.|-+=.+|+.
T Consensus       583 RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk  627 (659)
T KOG0060|consen  583 RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK  627 (659)
T ss_pred             HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence            99999999999999999999999999999777  55555555764

>PRK02224 chromosome segregation protein; Provisional

Probab=98.92  E-value=2.1e-09  Score=97.05  Aligned_cols=72  Identities=19%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHhHHHHHHhhc-----cc-eeeeeccccchh
Q psy317           63 MTSNLSGGQKK------RLSIALELVNN-----P-PIMFFDEPTSPLHKAEFTPKYERKV-----DT-KVDYTGNRTQNL  124 (137)
Q Consensus        63 ~~~~LSgGqkq------rv~IArAL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~~~-----~~-~v~~~~~~~~~~  124 (137)
                      .+..||||+|+      |++++++++.+     | +++|+||||++||+..+..+++.+.     |. +|++.||..+-+
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            36799999999      89999998863     3 6799999999999999998886432     33 699977776665


Q ss_pred             hhhhcCceEEec
Q psy317          125 QQTIRNEVCLIS  136 (137)
Q Consensus       125 ~~~~~~~~~~~~  136 (137)
                      .  ..|++|.+.
T Consensus       858 ~--~ad~~~~~~  867 (880)
T PRK02224        858 G--AADDLVRVE  867 (880)
T ss_pred             H--hcCeeEEee
Confidence            3  248888774

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.78  E-value=1.3e-08  Score=77.28  Aligned_cols=70  Identities=13%  Similarity=0.087  Sum_probs=50.3

Q ss_pred             HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeecccc
Q psy317           51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRT  121 (137)
Q Consensus        51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~  121 (137)
                      +..++..+......+.++++++| +..+.+++.+|+++|+||||+|+|+..+..+..    .+  .+.+++++||..
T Consensus        76 ~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~  151 (202)
T cd03243          76 FTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH  151 (202)
T ss_pred             EEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence            33344444455667788888776 555578889999999999999999987765533    22  267899977653

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK14079 recF recombination protein F; Provisional

Probab=98.76  E-value=1.8e-08  Score=83.01  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhcc-ceeeeec
Q psy317           65 SNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVD-TKVDYTG  118 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~-~~v~~~~  118 (137)
                      .-+|+||||++.+|..|+         .+|++++||||+++||...+..+++.+.. ..+++|+
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~  325 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAG  325 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEc
Confidence            458999999999999999         89999999999999999999999998753 3666754

>KOG2355|consensus

Probab=98.71  E-value=1.3e-08  Score=79.63  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeeeecc
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDYTGN  119 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~~~~  119 (137)
                      +-+++.+.++++  ..=+.+.+|-|||+||.||+.|.+.-++|+|||-|--||..++..+++.+      +|.||.|.||
T Consensus       129 Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH  206 (291)
T KOG2355|consen  129 RREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH  206 (291)
T ss_pred             Hhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence            344566666664  22346889999999999999999999999999999999999999988854      4889999888


Q ss_pred             ccchh
Q psy317          120 RTQNL  124 (137)
Q Consensus       120 ~~~~~  124 (137)
                      .-.-+
T Consensus       207 IFDGL  211 (291)
T KOG2355|consen  207 IFDGL  211 (291)
T ss_pred             eccch
Confidence            65443

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.71  E-value=2.2e-08  Score=76.98  Aligned_cols=77  Identities=12%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhc--cceeeeeccc
Q psy317           47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKV--DTKVDYTGNR  120 (137)
Q Consensus        47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~--~~~v~~~~~~  120 (137)
                      .++++..++..+...+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+.....    +++.+.  +.+++++||.
T Consensus        72 ~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~  150 (204)
T cd03282          72 FNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF  150 (204)
T ss_pred             hhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            4456777777777778889999999976 45566889999999999999999976443    333332  6799996664


Q ss_pred             cchh
Q psy317          121 TQNL  124 (137)
Q Consensus       121 ~~~~  124 (137)
                      ..-.
T Consensus       151 ~~l~  154 (204)
T cd03282         151 RDIA  154 (204)
T ss_pred             HHHH
Confidence            4433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.66  E-value=1.6e-07  Score=84.36  Aligned_cols=81  Identities=20%  Similarity=0.306  Sum_probs=62.5

Q ss_pred             HHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317           51 LDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ  122 (137)
Q Consensus        51 L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~  122 (137)
                      |-.+||... +++...+||||+.||+-+|.-+=..=  =+.+||||+.||.+...+.+++.+.     |.|++++-|...
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed  544 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED  544 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            445688765 58889999999999999999886553  5789999999999999998888554     779999545444


Q ss_pred             hhhhhhcCceE
Q psy317          123 NLQQTIRNEVC  133 (137)
Q Consensus       123 ~~~~~~~~~~~  133 (137)
                      -|..|  |+++
T Consensus       545 ti~~A--D~iI  553 (935)
T COG0178         545 TIRAA--DHII  553 (935)
T ss_pred             HHhhc--CEEE
Confidence            44333  5543

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.66  E-value=1.3e-07  Score=72.10  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=55.4

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeee
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDY  116 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~  116 (137)
                      +.+.+.+..+++...      .||||||..++||--|    ....+++|||||.++||...+..+.+.+.    +.-+++
T Consensus       121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii  194 (220)
T PF02463_consen  121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFII  194 (220)
T ss_dssp             HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred             ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455666776666433      9999999999998654    35779999999999999999999888766    347889


Q ss_pred             eccccchhhhh
Q psy317          117 TGNRTQNLQQT  127 (137)
Q Consensus       117 ~~~~~~~~~~~  127 (137)
                      +||...-+..|
T Consensus       195 ~Th~~~~~~~a  205 (220)
T PF02463_consen  195 TTHNPEMFEDA  205 (220)
T ss_dssp             E-S-HHHHTT-
T ss_pred             ccccccccccc
Confidence            88887766665

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.64  E-value=6.6e-08  Score=73.89  Aligned_cols=80  Identities=9%  Similarity=-0.054  Sum_probs=54.5

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      ...+|+.+|+.+|+.++...  .    ..+  . +++.++++.+++                          .+|+++|+
T Consensus        67 ~~~l~~~~~~~d~l~~~~s~--~----~~e--~-~~~~~iL~~~~~--------------------------~~p~llll  111 (199)
T cd03283          67 PVKIFTSIRVSDDLRDGISY--F----YAE--L-RRLKEIVEKAKK--------------------------GEPVLFLL  111 (199)
T ss_pred             cceEEEeccchhccccccCh--H----HHH--H-HHHHHHHHhccC--------------------------CCCeEEEE
Confidence            35577888888888765321  0    111  2 457778887763                          79999999


Q ss_pred             eCCCCCCCHHhHHHHH----Hhh--ccceeeeeccccchhh
Q psy317           91 DEPTSPLHKAEFTPKY----ERK--VDTKVDYTGNRTQNLQ  125 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~----~~~--~~~~v~~~~~~~~~~~  125 (137)
                      |||++|+|+..+..+.    +.+  .+.+++++||....+.
T Consensus       112 DEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~  152 (199)
T cd03283         112 DEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD  152 (199)
T ss_pred             ecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence            9999999999876443    222  2679999666654443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.60  E-value=7.4e-08  Score=65.08  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             CccCCCCCHHHH-HHHHHHHHH------hc------CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           61 TTMTSNLSGGQK-KRLSIALEL------VN------NPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        61 ~~~~~~LSgGqk-qrv~IArAL------~~------~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      .+..+.+||||| ..+.++.++      ..      .|++++|||||++||+..+..+++.++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~   89 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR   89 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence            567899999999 444444433      22      479999999999999999999887654

>KOG0064|consensus

Probab=98.59  E-value=3e-08  Score=85.85  Aligned_cols=78  Identities=23%  Similarity=0.285  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHcCCCcccCccC---------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcccee
Q psy317           44 SCFISEILDTLGLQEHKTTMT---------SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV  114 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~---------~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v  114 (137)
                      ++....+|+.+.|+..+.+-.         ..||||+|||+.+||-+.++|++-+|||-||++.+.....+++..++.+|
T Consensus       581 d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi  660 (728)
T KOG0064|consen  581 DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGI  660 (728)
T ss_pred             HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCc
Confidence            345667788777765444332         45999999999999999999999999999999999999999998886655


Q ss_pred             e--eecccc
Q psy317          115 D--YTGNRT  121 (137)
Q Consensus       115 ~--~~~~~~  121 (137)
                      -  =.||++
T Consensus       661 ~llsithrp  669 (728)
T KOG0064|consen  661 SLLSITHRP  669 (728)
T ss_pred             eEEEeecCc
Confidence            5  333654

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.59  E-value=8.4e-08  Score=86.54  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=55.6

Q ss_pred             HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeeccccc
Q psy317           50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRTQ  122 (137)
Q Consensus        50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~~  122 (137)
                      ++..+|-.+.....++++|+|++|++.|++++ .+|.++|+|||++|+|+.....+..    .+  .+.+++++||..+
T Consensus       374 i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e  451 (782)
T PRK00409        374 IFADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE  451 (782)
T ss_pred             EEEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence            33344444455567889999999999999998 8999999999999999998776643    22  3678999777633

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.57  E-value=2.7e-07  Score=68.23  Aligned_cols=60  Identities=28%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317           63 MTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ  122 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~  122 (137)
                      +...+|.|+||.+.++..+...+   .++++|||-++|+|..+..+++.+.     +..|++|||-++
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            46778999999999888888777   8999999999999999998888664     468999888765

>KOG0063|consensus

Probab=98.52  E-value=9e-08  Score=81.33  Aligned_cols=89  Identities=18%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHH---HHhhc---cceeeee
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPK---YERKV---DTKVDYT  117 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i---~~~~~---~~~v~~~  117 (137)
                      -+.+.+.++-+.+++..++-+.+||||++||+++|.+|=...++.+.|||.+.||...+...   ..+.+   +.|-++ 
T Consensus       434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv-  512 (592)
T KOG0063|consen  434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV-  512 (592)
T ss_pred             HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh-
Confidence            34667788888899999999999999999999999999999999999999999999987532   22222   446666 


Q ss_pred             ccccchhhhh--hcCceEEe
Q psy317          118 GNRTQNLQQT--IRNEVCLI  135 (137)
Q Consensus       118 ~~~~~~~~~~--~~~~~~~~  135 (137)
                        +.||.--|  +.|||++.
T Consensus       513 --VEhdfImaTYladrvivf  530 (592)
T KOG0063|consen  513 --VEHDFIMATYLADRVIVF  530 (592)
T ss_pred             --hhhHHHHHHhhcceeEEE
Confidence              88886555  33888864

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.49  E-value=1.4e-07  Score=71.81  Aligned_cols=48  Identities=21%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             CCCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHhHHHHHHhhccc
Q psy317           65 SNLSGG--QKKRLSIALELVNNPPIMFFDEPT-----SPLHKAEFTPKYERKVDT  112 (137)
Q Consensus        65 ~~LSgG--qkqrv~IArAL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~~~~~  112 (137)
                      +..+|+  +++++.||++++.+|+++++||||     +|||+..++.+.+.+...
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            444444  889999999999999999999999     999999999999877644

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.47  E-value=6.1e-07  Score=75.80  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHcCCCcc---cCcc--CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------cc
Q psy317           43 GSCFISEILDTLGLQEH---KTTM--TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VD  111 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~---~~~~--~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~  111 (137)
                      ..+.++.+|+++.+.++   .|..  +-.||.|||||+++--|+.-+.+|+++||=.+--||.-+..|+..+      .|
T Consensus       420 s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG  499 (546)
T COG4615         420 SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG  499 (546)
T ss_pred             ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC
Confidence            34677888988887654   3333  4569999999999999999999999999999999999999999843      39


Q ss_pred             ceeeeeccccchhhhh
Q psy317          112 TKVDYTGNRTQNLQQT  127 (137)
Q Consensus       112 ~~v~~~~~~~~~~~~~  127 (137)
                      +||+-.||.+|=-.-|
T Consensus       500 KTI~aIsHDd~YF~~A  515 (546)
T COG4615         500 KTIFAISHDDHYFIHA  515 (546)
T ss_pred             CeEEEEecCchhhhhH
Confidence            9999988888755444

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.45  E-value=4.1e-07  Score=77.22  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCCCcc--cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeee
Q psy317           45 CFISEILDTLGLQEH--KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDY  116 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~--~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~  116 (137)
                      ..+.++|.+.|+.+-  .-++++.||.|||.|+.||++++..|.+++.||-.|-||+.+...+...+      .|.|+..
T Consensus       484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTliv  563 (593)
T COG2401         484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV  563 (593)
T ss_pred             hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            456789999999763  45678999999999999999999999999999999999999988776633      3778888


Q ss_pred             eccccchhhhhhc-CceEEe
Q psy317          117 TGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~~  135 (137)
                      .||+. |+--|++ |.++++
T Consensus       564 vThrp-Ev~~AL~PD~li~v  582 (593)
T COG2401         564 VTHRP-EVGNALRPDTLILV  582 (593)
T ss_pred             EecCH-HHHhccCCceeEEe
Confidence            77665 4555665 777654

>TIGR01069 mutS2 MutS2 family protein

Probab=98.34  E-value=4.3e-07  Score=81.89  Aligned_cols=73  Identities=19%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeeccccc
Q psy317           49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRTQ  122 (137)
Q Consensus        49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~~  122 (137)
                      ++...+|-.+......+++|+|++++..|++++ .+|.++|+|||++|+|+.+...+..    .+  .|.+++++||...
T Consensus       368 ~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       368 EIFADIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             heeeecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            333344444445567889999999999998876 8999999999999999999986643    22  3678999776643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0063|consensus

Probab=98.33  E-value=5.9e-07  Score=76.47  Aligned_cols=87  Identities=24%  Similarity=0.297  Sum_probs=67.1

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR  120 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~  120 (137)
                      ...++.+.+.|....++-+..||||+-||.+||++-+.+.++.++|||.+.||...+.......+     +.-|++   .
T Consensus       193 ~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIV---V  269 (592)
T KOG0063|consen  193 NKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV---V  269 (592)
T ss_pred             cHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEE---E
Confidence            45567778888888999999999999999999999999999999999999999998765444333     223444   6


Q ss_pred             cchhhhhhc--CceEEe
Q psy317          121 TQNLQQTIR--NEVCLI  135 (137)
Q Consensus       121 ~~~~~~~~~--~~~~~~  135 (137)
                      .||+..--=  |-+|.|
T Consensus       270 EHDLsVLDylSDFiCcL  286 (592)
T KOG0063|consen  270 EHDLSVLDYLSDFICCL  286 (592)
T ss_pred             EeechHHHhhhcceeEE
Confidence            777764322  555554

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.32  E-value=1.8e-06  Score=78.90  Aligned_cols=61  Identities=23%  Similarity=0.309  Sum_probs=49.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHH------hcC--CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317           62 TMTSNLSGGQKKRLSIALEL------VNN--PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ  122 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL------~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~  122 (137)
                      +.+.+||||++-.++||.+|      ..+  -++|||||||..||+.....+++.+.     +..|.+.||..+
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee  884 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE  884 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH
Confidence            67899999999888877765      445  69999999999999999998888655     458888555543

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.23  E-value=2.8e-06  Score=65.56  Aligned_cols=59  Identities=14%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhcc-----ceeeeeccccchhhhh
Q psy317           69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKVD-----TKVDYTGNRTQNLQQT  127 (137)
Q Consensus        69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~~-----~~v~~~~~~~~~~~~~  127 (137)
                      .-+.||+.++++++.+|.++|+|||++|+|+.....    +++.+..     .+++++||........
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            556799999999999999999999999999865332    3344332     3688966665554444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.22  E-value=5.1e-06  Score=61.26  Aligned_cols=66  Identities=5%  Similarity=-0.116  Sum_probs=47.9

Q ss_pred             cccCccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHhHHHHHH---hh--ccceeeeeccccch
Q psy317           58 EHKTTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLH---KAEFTPKYE---RK--VDTKVDYTGNRTQN  123 (137)
Q Consensus        58 ~~~~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD---~~~~~~i~~---~~--~~~~v~~~~~~~~~  123 (137)
                      ...+..+..+|+|++|      ......+...+|+++++|||++.+|   ...+..+.+   .+  .|.++++++|....
T Consensus        63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~  142 (187)
T cd01124          63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL  142 (187)
T ss_pred             EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence            3456678889999998      5555556778999999999999999   555544433   22  37789997765543

A related protein is found in archaea.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.06  E-value=5.4e-06  Score=64.07  Aligned_cols=56  Identities=20%  Similarity=0.216  Sum_probs=39.8

Q ss_pred             CCCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHhH-HHHHHhhc---cceeeeeccc
Q psy317           65 SNLSGGQKKR----LSIALEL--VNNPPIMFFDEP---TSPLHKAEF-TPKYERKV---DTKVDYTGNR  120 (137)
Q Consensus        65 ~~LSgGqkqr----v~IArAL--~~~P~iLlLDEP---tsgLD~~~~-~~i~~~~~---~~~v~~~~~~  120 (137)
                      .++|.|+.+.    ..+++++  +.+|+++|||||   |+++|.... ..+++.+.   +.+++++||.
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~  152 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY  152 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence            4567776654    3466665  569999999999   999998663 34555432   6689997776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK13695 putative NTPase; Provisional

Probab=97.83  E-value=4.7e-05  Score=56.30  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=49.2

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHhHHHHHHhhc-cceeeeecccc
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDE--PTSPLHKAEFTPKYERKV-DTKVDYTGNRT  121 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~-~~~v~~~~~~~  121 (137)
                      .++...+|++++-+..+++..+.+|+++++||  |+.++++..++.+.+.+. +.++++++|..
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~  136 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR  136 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence            34456799999999999999999999999999  777888776665555544 67999988874

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.68  E-value=0.00011  Score=65.17  Aligned_cols=57  Identities=21%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHhHHHHHH-hhc--cceeeeeccc
Q psy317           63 MTSNLSGGQKKRLSIALELV------NNPPIMFFDEPTSPLHKAEFTPKYE-RKV--DTKVDYTGNR  120 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~-~~~--~~~v~~~~~~  120 (137)
                      .+..||||++|-+++|-.++      ...++ |+||||+.||...+..+.+ .+.  ..-|++.||.
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d  613 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTD  613 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEech
Confidence            46789999999987666433      24566 5699999999999998886 332  3456654443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13175 AAA_15: AAA ATPase domain

Probab=97.41  E-value=0.00042  Score=56.69  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccch
Q psy317           62 TMTSNLSGGQKKRLSIALELV------NN-PP---IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQN  123 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~------~~-P~---iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~  123 (137)
                      .++..+|.|.++.+.++..+.      .. +.   ++++|||=+.|.|..+..+++.+.      +..|++|||-+|-
T Consensus       337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            367889999999888877652      12 22   999999999999999999998664      4689999998763

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.38  E-value=0.00019  Score=55.81  Aligned_cols=79  Identities=13%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCCC------CCHH
Q psy317           43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIAL----------------ELVNNPPIMFFDEPTSP------LHKA  100 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IAr----------------AL~~~P~iLlLDEPtsg------LD~~  100 (137)
                      ..+++..+...+++.+..++.+..  +|+.|++.+++                +...+|+++|+| |+++      +|+.
T Consensus        56 i~~Rl~~i~~~~~~~~~~~rl~~~--~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~  132 (239)
T cd01125          56 IHRRLEAILQHLEPDDAGDRLFID--SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNG  132 (239)
T ss_pred             HHHHHHHHHhhcCCcCcccceEEe--ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHH
Confidence            456777788877765544443322  56666665554                446899999999 7764      6888


Q ss_pred             hHHHHHHhh------ccceeeeeccccchh
Q psy317          101 EFTPKYERK------VDTKVDYTGNRTQNL  124 (137)
Q Consensus       101 ~~~~i~~~~------~~~~v~~~~~~~~~~  124 (137)
                      ....+++.+      .+.+|++++|....-
T Consensus       133 ~~~~~~~~L~~~a~~~g~avl~v~H~~K~~  162 (239)
T cd01125         133 AMDAVIKALRRIAAQTGAAILLVHHVRKGS  162 (239)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence            887777643      277999988877543

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.25  E-value=0.00072  Score=54.24  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-hccceeeeeccccchhhhhh-----------c--Cce
Q psy317           67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER-KVDTKVDYTGNRTQNLQQTI-----------R--NEV  132 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-~~~~~v~~~~~~~~~~~~~~-----------~--~~~  132 (137)
                      +.+=.|..-....+.+.+|+++|+|||++.-+   ...+++. ..|.+|++++|.. ++..+.           +  +|+
T Consensus       177 ~~~~~k~~~~~~~i~~~~P~villDE~~~~e~---~~~l~~~~~~G~~vI~ttH~~-~~~~~~~r~~~~~l~~~~~~~r~  252 (270)
T TIGR02858       177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGREED---VEALLEALHAGVSIIATAHGR-DVEDLYKRPVFKELIENEAFERY  252 (270)
T ss_pred             cccchHHHHHHHHHHhCCCCEEEEeCCCcHHH---HHHHHHHHhCCCEEEEEechh-HHHHHHhChHHHHHHhcCceEEE
Confidence            44444444455555667999999999986433   3333333 2488999977753 444442           2  888


Q ss_pred             EEec
Q psy317          133 CLIS  136 (137)
Q Consensus       133 ~~~~  136 (137)
                      ++|+
T Consensus       253 i~L~  256 (270)
T TIGR02858       253 VVLS  256 (270)
T ss_pred             EEEe
Confidence            8886

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=97.16  E-value=0.00062  Score=62.04  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=34.0

Q ss_pred             hcCCCEEEEeCCCCCC-CHHhHHHHHHhhc-----cceeeeeccccchhh
Q psy317           82 VNNPPIMFFDEPTSPL-HKAEFTPKYERKV-----DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~  125 (137)
                      ..+|+++++|||+.+| |+..+..+.+.++     |.++++.||...|+.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~  699 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE  699 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence            5799999999999999 6887777766433     668889666666654

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.09  E-value=0.00047  Score=54.70  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             cCCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHhH-H-HHHHhhc--cceeeeeccccchhhhhhc-
Q psy317           63 MTSNLSGGQ--------KKRLSIALELVNNPPIMFFDEPTSPLHKAEF-T-PKYERKV--DTKVDYTGNRTQNLQQTIR-  129 (137)
Q Consensus        63 ~~~~LSgGq--------kqrv~IArAL~~~P~iLlLDEPtsgLD~~~~-~-~i~~~~~--~~~v~~~~~~~~~~~~~~~-  129 (137)
                      ....+|||+        +||+++||++..++.|.+|  ||+.+|..+. . .+.+.++  +.|.++   .+|.+..... 
T Consensus       126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~iv---ls~~la~~~~~  200 (249)
T cd01128         126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELV---LDRRLAERRIF  200 (249)
T ss_pred             CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEE---EchHHhhCCCC
Confidence            345579999        9999999999899999999  9999995332 2 3455555  457777   5666666665 


Q ss_pred             CceEEe
Q psy317          130 NEVCLI  135 (137)
Q Consensus       130 ~~~~~~  135 (137)
                      +.+.++
T Consensus       201 paI~vl  206 (249)
T cd01128         201 PAIDIL  206 (249)
T ss_pred             CeEEEc
Confidence            666555

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.09  E-value=0.0016  Score=50.70  Aligned_cols=55  Identities=9%  Similarity=-0.042  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh----hc---cceeeeeccccchhhhhh
Q psy317           71 QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER----KV---DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        71 qkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~----~~---~~~v~~~~~~~~~~~~~~  128 (137)
                      +.+++.-....+.+|.++|+|||++|.++.....+...    +.   +.++++   .||++..+.
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~---~TH~~el~~  157 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLF---STHYHSLCD  157 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEE---EeccHHHHH
Confidence            44555444455689999999999999999986655442    22   568888   455555443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13166 AAA_13: AAA domain

Probab=96.85  E-value=0.0031  Score=55.98  Aligned_cols=79  Identities=25%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCCcc-----------------cCccCCCCCHHHHHHHHHHH--HHhc-------CCCEEEEeCCCCCCC
Q psy317           45 CFISEILDTLGLQEH-----------------KTTMTSNLSGGQKKRLSIAL--ELVN-------NPPIMFFDEPTSPLH   98 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~-----------------~~~~~~~LSgGqkqrv~IAr--AL~~-------~P~iLlLDEPtsgLD   98 (137)
                      ..+.+.|..+|....                 .......||-|+|.-+++|-  |.+.       ...++++|.|.|.||
T Consensus       462 ~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD  541 (712)
T PF13166_consen  462 DRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLD  541 (712)
T ss_pred             HHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCC
Confidence            456667888875321                 01236789999999999987  3333       678999999999999


Q ss_pred             HHhHHHHHHhhc-------cceeeeeccccchhhh
Q psy317           99 KAEFTPKYERKV-------DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        99 ~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~  126 (137)
                      ...+..+..++.       ..-|++   -|||+.+
T Consensus       542 ~~~~~~v~~~l~~~~~~~~~~QviI---lTHn~~F  573 (712)
T PF13166_consen  542 HNRRFGVASRLKEEIKNSKFRQVII---LTHNLYF  573 (712)
T ss_pred             HHHHHHHHHHHHHHhhcCCcceEEE---EeCcHHH
Confidence            999998888655       236777   5666554

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.81  E-value=0.004  Score=48.51  Aligned_cols=52  Identities=10%  Similarity=0.034  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhc---cceeeeeccccc
Q psy317           71 QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKV---DTKVDYTGNRTQ  122 (137)
Q Consensus        71 qkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~---~~~v~~~~~~~~  122 (137)
                      +.+++.-...-+.+|.++|+|||.+|.|+.....    +++.+.   +.+++++||...
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            4455544445578999999999988777554433    344333   558889665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.79  E-value=0.0038  Score=48.60  Aligned_cols=54  Identities=17%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHhHHHHHHhhc-----cceeeeecc
Q psy317           66 NLSGGQKKRLSIALELV----NNPPIMFFDEPTSPL----HKAEFTPKYERKV-----DTKVDYTGN  119 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgL----D~~~~~~i~~~~~-----~~~v~~~~~  119 (137)
                      .+|++..++-.+.+.+-    .+|+++++||||+++    |+..+..+++.+.     |.+++++++
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~  161 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN  161 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            36666555544444332    379999999999999    7766666666433     557766544

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=96.62  E-value=0.0033  Score=57.61  Aligned_cols=50  Identities=20%  Similarity=0.139  Sum_probs=38.0

Q ss_pred             HHHHHhcCCCEEEEeCCCCCC-CHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317           77 IALELVNNPPIMFFDEPTSPL-HKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        77 IArAL~~~P~iLlLDEPtsgL-D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~  126 (137)
                      |++++..+|+++++|||+.+| |+..+..+.+.++     |.++++.||...|+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            677889999999999999999 6887776666432     6688886665555543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.47  E-value=0.013  Score=45.12  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHhHHHHHHhh-----ccceeeeecccc
Q psy317           66 NLSGGQKKRLSIALELVN--NPPIMFFDEPTSP---LHKAEFTPKYERK-----VDTKVDYTGNRT  121 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~--~P~iLlLDEPtsg---LD~~~~~~i~~~~-----~~~~v~~~~~~~  121 (137)
                      ..|.++++.+.....++.  +|+++++||||+.   .|......++..+     .+.++++++|..
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~  165 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPY  165 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence            457788999999999987  9999999999965   4444444443322     367888877653

>KOG0933|consensus

Probab=96.45  E-value=0.001  Score=61.34  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=43.2

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           58 EHKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        58 ~~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      +......+.||||||=.|+++..|+    ...+++||||--|+||....+.|-.+++
T Consensus      1074 ~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIk 1130 (1174)
T KOG0933|consen 1074 GIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIK 1130 (1174)
T ss_pred             ccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHH
Confidence            3444557889999999998877554    3669999999999999999998877655

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.37  E-value=0.016  Score=40.66  Aligned_cols=63  Identities=13%  Similarity=0.003  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC----------CCHHhHHHHHH---hhc--cceeeeeccccchhhh
Q psy317           64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP----------LHKAEFTPKYE---RKV--DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg----------LD~~~~~~i~~---~~~--~~~v~~~~~~~~~~~~  126 (137)
                      ....+.+..+++..+++...+|+++++|||++-          .+......+.+   ..+  +.++++++|.......
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~  142 (165)
T cd01120          65 ADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG  142 (165)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc
Confidence            344556677778889999999999999999954          44443343333   333  7799998887766544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.24  E-value=0.0093  Score=56.31  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317           63 MTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~  129 (137)
                      ....||||||-.++||.-++    ...++.+|||-=++||..++..+...+.    +.--++.||+.-.|..|-+
T Consensus      1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~ 1137 (1163)
T COG1196        1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADR 1137 (1163)
T ss_pred             chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHH
Confidence            45679999999999988663    4569999999999999999998888766    3455577787777666544

>COG4637 Predicted ATPase [General function prediction only]

Probab=95.93  E-value=0.017  Score=47.83  Aligned_cols=57  Identities=26%  Similarity=0.414  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317           65 SNLSGGQKKRLSIALELVN--NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT  121 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~--~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~  121 (137)
                      ..||-|+.+.+++|.+|..  .|.+++||||=.+|-|.-...+.+.+.    ..-|+++||-.
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~  331 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSP  331 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCH
Confidence            4899999999999999976  689999999999999998887777555    33788865544

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=95.92  E-value=0.024  Score=52.14  Aligned_cols=67  Identities=18%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHhHH-HHHHhhc---cceeeeeccccchhhhhh
Q psy317           61 TTMTSNLSGGQKKRLSIALELVN--NPPIMFFDEP---TSPLHKAEFT-PKYERKV---DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~--~P~iLlLDEP---tsgLD~~~~~-~i~~~~~---~~~v~~~~~~~~~~~~~~  128 (137)
                      |......|-=+.....++..|-.  ++.++|+|||   |+.+|-.+.. .+++.+.   +.+++++||. |++..-.
T Consensus       661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~-~el~~l~  736 (854)
T PRK05399        661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHY-HELTELE  736 (854)
T ss_pred             cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEech-HHHHHHh
Confidence            34456678778888888888755  9999999999   9999976643 3555544   4688999998 7776543

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=95.86  E-value=0.019  Score=48.11  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccchhh
Q psy317           65 SNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~~~~  125 (137)
                      .-.|-||++-+.+|.-|+         ..++||+|||-+|-||..-+..+++... +.-+++|+-...++.
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~~~~~~Q~fvT~t~~~~~~  344 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDTIELGVQVFVTTTDLEDID  344 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhhcccCCeEEEEccCHHHhh
Confidence            559999999999887664         4789999999999999999999999833 567888876555555

>KOG0964|consensus

Probab=95.62  E-value=0.008  Score=55.57  Aligned_cols=64  Identities=28%  Similarity=0.309  Sum_probs=49.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeee-eccccchhhhh
Q psy317           64 TSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDY-TGNRTQNLQQT  127 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~-~~~~~~~~~~~  127 (137)
                      ..+||||||--|+||..++    -..+..|+||--++||+..+..+-..+.   ..+=|+ ||-++.-+..|
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vA 1166 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVA 1166 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHH
Confidence            4589999999999988764    3569999999999999999998777655   334444 44777777665

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.19  E-value=0.054  Score=41.01  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=33.5

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccc
Q psy317           76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQ  122 (137)
Q Consensus        76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~  122 (137)
                      .++++|..+|+++++|||.   |+.....+++... |..++.|+|...
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~~G~~v~~t~Ha~~  110 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAETGHLVMSTLHTNS  110 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            5788999999999999996   6666655555443 778888777764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=94.98  E-value=0.0014  Score=56.38  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             HHHcCCCcccCccCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHhHHHHHH---h--hccceeeeeccccch
Q psy317           51 LDTLGLQEHKTTMTSNLSGGQKKRLSIA--LELVNNPPIMFFDEPTSPLHKAEFTPKYE---R--KVDTKVDYTGNRTQN  123 (137)
Q Consensus        51 L~~lgL~~~~~~~~~~LSgGqkqrv~IA--rAL~~~P~iLlLDEPtsgLD~~~~~~i~~---~--~~~~~v~~~~~~~~~  123 (137)
                      ++.+++.+..++.+..+|+|++||+.|+  .++...|+..          ...+..+++   .  ..|.|+++++|....
T Consensus       100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~  169 (484)
T TIGR02655       100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE  169 (484)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            3445555566677788899999999998  5666666544          334444443   2  237899998776543


Q ss_pred             h--------hhhhcCceEEec
Q psy317          124 L--------QQTIRNEVCLIS  136 (137)
Q Consensus       124 ~--------~~~~~~~~~~~~  136 (137)
                      .        .+.+.|.|++|.
T Consensus       170 ~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       170 YGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             ccccccCCceeEeeeeEEEEE
Confidence            2        133447777664

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG0962|consensus

Probab=94.84  E-value=0.031  Score=53.09  Aligned_cols=44  Identities=30%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             CCCCHHHH------HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh
Q psy317           65 SNLSGGQK------KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER  108 (137)
Q Consensus        65 ~~LSgGqk------qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~  108 (137)
                      +.-|.|||      =|+++|=.++.+..+|=|||||++||.....-+...
T Consensus      1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~ 1231 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKA 1231 (1294)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHH
Confidence            45799998      577888899999999999999999999988766553

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=94.70  E-value=0.045  Score=49.95  Aligned_cols=45  Identities=13%  Similarity=0.144  Sum_probs=32.3

Q ss_pred             HhcCCCEEEEeCCCCCCC-HHhHHHHHHhh-----ccceeeeeccccchhh
Q psy317           81 LVNNPPIMFFDEPTSPLH-KAEFTPKYERK-----VDTKVDYTGNRTQNLQ  125 (137)
Q Consensus        81 L~~~P~iLlLDEPtsgLD-~~~~~~i~~~~-----~~~~v~~~~~~~~~~~  125 (137)
                      +-.+|+++++|||+.+|| +..+..+.+.+     .|.++++.||...|+.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID  682 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence            456899999999999999 55555555432     2668888666666554

>COG3910 Predicted ATPase [General function prediction only]

Probab=94.62  E-value=0.059  Score=41.97  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT  121 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~  121 (137)
                      ..+-....|.|+-=.--+.+.+ ++--|.|||||-++|.|.-+..++.++.     |.-+++.||-.
T Consensus       123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP  188 (233)
T COG3910         123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP  188 (233)
T ss_pred             CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence            3455788999997655555554 5668999999999999999988888766     66888877754

>KOG0996|consensus

Probab=94.24  E-value=0.038  Score=52.00  Aligned_cols=65  Identities=23%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhh
Q psy317           63 MTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQT  127 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~  127 (137)
                      ++.+||||+|-.-++|-.++.    ..+++++||--|+||..+...+.....    ++--++-|.+..+...|
T Consensus      1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa 1264 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELA 1264 (1293)
T ss_pred             hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHH
Confidence            578999999999999987764    569999999999999998876665443    55455555555554444

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=94.13  E-value=0.11  Score=46.13  Aligned_cols=54  Identities=24%  Similarity=0.351  Sum_probs=44.5

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeee
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY  116 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~  116 (137)
                      .+.+.++.+|+.......+..+|||                +|+||| +..||+..+..+++.+...++.+
T Consensus       243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~~~v~~  296 (615)
T TIGR02903       243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLEDKRVEF  296 (615)
T ss_pred             HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhhCeEEe
Confidence            4455678889988888888999999                999999 89999999999988887655443

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PF13514 AAA_27: AAA domain

Probab=93.72  E-value=0.13  Score=48.47  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=54.8

Q ss_pred             cCCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-
Q psy317           63 MTSNLSGGQKK------RLSIALEL-VNNPPI-MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-  129 (137)
Q Consensus        63 ~~~~LSgGqkq------rv~IArAL-~~~P~i-LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-  129 (137)
                      .+..||.|.+=      |++++..+ -..+++ +|+|+++.+.|..-....++.+.    ..-|+|-||-.|-+..|.. 
T Consensus      1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~~ 1101 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELAREV 1101 (1111)
T ss_pred             eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHHh
Confidence            35679999994      55555565 445666 99999999999998888888666    4478888988898887765 


Q ss_pred             --CceEEe
Q psy317          130 --NEVCLI  135 (137)
Q Consensus       130 --~~~~~~  135 (137)
                        +.|-|+
T Consensus      1102 ~~~~v~v~ 1109 (1111)
T PF13514_consen 1102 FGDRVNVH 1109 (1111)
T ss_pred             cCCCCcee
Confidence              555543

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=93.63  E-value=0.12  Score=47.03  Aligned_cols=45  Identities=13%  Similarity=0.169  Sum_probs=32.2

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHhHHHHHHhh-----ccceeeeeccccchh
Q psy317           80 ELVNNPPIMFFDEPTSPLH-KAEFTPKYERK-----VDTKVDYTGNRTQNL  124 (137)
Q Consensus        80 AL~~~P~iLlLDEPtsgLD-~~~~~~i~~~~-----~~~~v~~~~~~~~~~  124 (137)
                      .+..+|+++++|||..+|| +.....+.+.+     .|..+.+.||...|+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  688 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA  688 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            4567999999999999999 66665555532     266778855555554

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=93.58  E-value=0.075  Score=43.68  Aligned_cols=44  Identities=7%  Similarity=0.097  Sum_probs=34.9

Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE  131 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~  131 (137)
                      +++|||+.+||+..+..+++.+.    +.+++++||..+.+-.+++.|
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR  163 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR  163 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence            55789999999999998888776    456779888888777776633

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=92.22  E-value=0.37  Score=39.62  Aligned_cols=46  Identities=11%  Similarity=0.068  Sum_probs=35.1

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchh
Q psy317           76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNL  124 (137)
Q Consensus        76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~  124 (137)
                      .+++||-.+|+++++||+.   |+.+....++.. .|-.|+.|.|...-.
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tGh~v~~T~Ha~~~~  233 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALTAAETGHLVFGTLHTNSAA  233 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcCCcEEEEEcCCCHH
Confidence            4778899999999999997   887776655543 477877766876544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.20  E-value=0.34  Score=43.02  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             CccCCC-CCHHHHHHHHHHHHHh---cC-----CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317           61 TTMTSN-LSGGQKKRLSIALELV---NN-----PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR  120 (137)
Q Consensus        61 ~~~~~~-LSgGqkqrv~IArAL~---~~-----P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~  120 (137)
                      +..+++ ||-|++.-++++--|+   .+     -+++++|.|.+.+|.......+..++     +.-|++-||.
T Consensus       523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn  596 (758)
T COG4694         523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN  596 (758)
T ss_pred             CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence            334555 9999999988776553   23     46899999999999998887776544     5577774444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.15  E-value=1.3  Score=29.22  Aligned_cols=58  Identities=26%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH-----------hhccceeeeeccc
Q psy317           63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE-----------RKVDTKVDYTGNR  120 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-----------~~~~~~v~~~~~~  120 (137)
                      ......++...+..++++--.+|.++++||+..-.+.........           ...+..++.++|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            345678888888888888888899999999999999887764432           2235566666663

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.88  E-value=0.1  Score=50.80  Aligned_cols=61  Identities=16%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccccchhh
Q psy317           64 TSNLSGGQKKRLSIALELV--------N--------NP-PIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQ  125 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~--------~--------~P-~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~~~~~  125 (137)
                      .+.+|||+|..+.++.-++        .        -| ++|+|||. +++|..+...+++.......-+.--+++++.
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~ 1440 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENIS 1440 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhcc
Confidence            6889999998887776554        2        23 45699999 9999999999988776442222222455543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=91.05  E-value=0.73  Score=33.66  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCC-cccCccCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           46 FISEILDTLGLQ-EHKTTMTSNLSGGQKKRLS--IALELVN-NPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        46 ~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~--IArAL~~-~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      .+.++++..++. -..-.++..+|+|++|++.  +++.+-. .++++    |+|++|......+++.+.
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~  190 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIA  190 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHH
Confidence            455667766764 3345577889999999877  5555544 34443    999999999998888654

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=89.84  E-value=0.28  Score=42.00  Aligned_cols=38  Identities=18%  Similarity=0.084  Sum_probs=34.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy317           63 MTSNLSGGQKKRLSIALELV-------NNPPIMFFDEPTSPLHKA  100 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~-------~~P~iLlLDEPtsgLD~~  100 (137)
                      ..++.|.|+|+|+..+.+.+       .++-+|++|+||.+.|+.
T Consensus       218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~  262 (432)
T PRK06793        218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR  262 (432)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence            46889999999999998887       899999999999999986

>TIGR00152 dephospho-CoA kinase

Probab=89.43  E-value=0.099  Score=38.92  Aligned_cols=66  Identities=12%  Similarity=0.005  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEec
Q psy317           69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLIS  136 (137)
Q Consensus        69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~~  136 (137)
                      .|+-+|..||.++..+|+.+..+|  +.+||..+..+.+.+.     +.+|++.+|..+.-..... |+++++.
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~  131 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVD  131 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEE
Confidence            378899999999999999988877  8899999988877543     3478886665544222222 7777664

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=89.22  E-value=1.8  Score=38.33  Aligned_cols=62  Identities=23%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317           65 SNLSGGQKKRLSIAL--ELVNN--PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        65 ~~LSgGqkqrv~IAr--AL~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~  129 (137)
                      ...|||+-=|+++|.  +++..  .+.||+||-=+|+.=.....|-+++.    ..-|+.   .||=-+.|..
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~---VTHlPQVAa~  499 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLC---VTHLPQVAAM  499 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEE---EecHHHHHhh
Confidence            458999999999998  34443  56999999999999888888888776    347777   5565566665

>KOG0018|consensus

Probab=88.94  E-value=0.3  Score=45.85  Aligned_cols=49  Identities=24%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           62 TMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      ++...||||+|-..++|.-++.    ..+..+|||--|+||-.+...+....+
T Consensus      1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred             CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence            3457799999999999887764    459999999999999999998888766

>KOG0250|consensus

Probab=88.81  E-value=0.21  Score=46.91  Aligned_cols=67  Identities=21%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             cCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhccc-------eeeeeccccchhhhhhcCc
Q psy317           63 MTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-------KVDYTGNRTQNLQQTIRNE  131 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~-------~v~~~~~~~~~~~~~~~~~  131 (137)
                      ....||||+|=-..+|..|    +...++-.|||=--.+|..++...++.+.+.       .|++   |+|||.....+.
T Consensus       986 d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~Ifi---TPqdi~~l~~~~ 1062 (1074)
T KOG0250|consen  986 DTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFI---TPQDISKLNSDD 1062 (1074)
T ss_pred             cccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEE---ccccHhhhcccc
Confidence            3577999999998888877    4678999999999999999999888877744       7889   999998777633


Q ss_pred             e
Q psy317          132 V  132 (137)
Q Consensus       132 ~  132 (137)
                      .
T Consensus      1063 ~ 1063 (1074)
T KOG0250|consen 1063 G 1063 (1074)
T ss_pred             c
Confidence            3

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.09  E-value=2.1  Score=39.42  Aligned_cols=47  Identities=26%  Similarity=0.264  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHH---HHHHHhc--------CC--CEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317           65 SNLSGGQKKRLS---IALELVN--------NP--PIMFFDEPTSPLHKAEFTPKYERKVD  111 (137)
Q Consensus        65 ~~LSgGqkqrv~---IArAL~~--------~P--~iLlLDEPtsgLD~~~~~~i~~~~~~  111 (137)
                      ..+|||||++++   +|.+|..        .|  .-+||||.|+-=|+.....++.....
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~ 1048 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFRE 1048 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHH
Confidence            569999999985   4555532        33  46999999999999999988886663

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=86.07  E-value=0.43  Score=35.58  Aligned_cols=53  Identities=8%  Similarity=0.076  Sum_probs=41.7

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHh
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE  101 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~  101 (137)
                      ...+.+..+...+..+.+..+.|.|++++..+   .+.+|+++|+|+|+.+.++..
T Consensus        63 ~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~  115 (198)
T cd02023          63 LLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL  115 (198)
T ss_pred             HHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence            44566777777667778888999999876555   578899999999999998643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=85.87  E-value=1.6  Score=38.93  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhccc----eeeeeccccchhhhhhcCceEEe
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKVDT----KVDYTGNRTQNLQQTIRNEVCLI  135 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~  135 (137)
                      .|.|||.+||=+.|.|..+..+++.+.+.    -+++|||-+|=..+|--+.+|.+
T Consensus       301 r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~l  356 (581)
T COG3593         301 RPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRL  356 (581)
T ss_pred             ccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEE
Confidence            44499999999999999999888887755    47799999988877766777754

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=85.17  E-value=0.63  Score=43.01  Aligned_cols=57  Identities=19%  Similarity=0.026  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHh-HHHHHHhhc---cceeeeecccc
Q psy317           65 SNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAE-FTPKYERKV---DTKVDYTGNRT  121 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~-~~~i~~~~~---~~~v~~~~~~~  121 (137)
                      ..+|-=+--...++..|  ++++.++|+||+   |+.+|-.+ ...+++.+.   +..++++||..
T Consensus       650 ~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~  715 (840)
T TIGR01070       650 SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF  715 (840)
T ss_pred             cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch
Confidence            33444444455555554  578999999999   55555555 333555444   46788988763

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=84.57  E-value=2.2  Score=34.53  Aligned_cols=45  Identities=9%  Similarity=-0.108  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccc-eeeeeccccc
Q psy317           74 RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDT-KVDYTGNRTQ  122 (137)
Q Consensus        74 rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~-~v~~~~~~~~  122 (137)
                      .-.++.+|-.+|+++++|||.+   .. ...+++.. .|. +++.|.|...
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~~g~~~~i~T~Ha~~  254 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVNTGHPGSITTLHAGS  254 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHhcCCCeEEEEEeCCC
Confidence            3357778999999999999997   22 33445544 354 3456445543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=83.00  E-value=5.1  Score=33.89  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             HHHHHHhcCCCEEEEeC----------CCCCCCHHhHHHHHHhhc---------cceeeeeccccchhhhhh
Q psy317           76 SIALELVNNPPIMFFDE----------PTSPLHKAEFTPKYERKV---------DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        76 ~IArAL~~~P~iLlLDE----------PtsgLD~~~~~~i~~~~~---------~~~v~~~~~~~~~~~~~~  128 (137)
                      .+..|....|.||++||          +.++.|......+.+.+.         +..|+.+||...++..|+
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAl  301 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL  301 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHH
Confidence            34556678999999999          455667665554544332         235778999999998885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		6e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		6e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		7e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		7e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		7e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-08
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-07
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-07
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-07
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-07
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-07
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-07
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		4e-06
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-05
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-05
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-05
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-05
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-05
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		7e-05
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-05
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		8e-05
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-04
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-04
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-04
1g29_1	372	Malk Length = 372		4e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		6e-04
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		7e-04
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		7e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		8e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		8e-04

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 157 NPKILIFDEATSAL 170

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 163 NPKILIFDEATSAL 176

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 159 NPKILIFDEATSAL 172

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 157 NPKILIFDEATSAL 170

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 163 NPKILIFDEATSAL 176

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FDE TS L
Sbjct: 159 NPKILIFDEATSAL 172

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+LD +GL++       +LSGGQ +R++IA  L   P IM FDEPTS L
Sbjct: 121 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+LD +GL++       +LSGGQ +R++IA  L   P IM FDEPTS L
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29  GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
           GM V   ++    AG+  FISE      L+E   T+     + LSGGQ++R++IA  LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84  NPPIMFFDEPTSPL 97
           NP I+ FD+ TS L
Sbjct: 163 NPKILIFDQATSAL 176

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  DE TS L  A
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  D+ TS L  A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  D+ TS L  A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQK+RLSIA   +NNPPI+  DE TS L
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSAL 508

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R++IA  L NNPPI+  DEPT  L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGAL 176

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 46   FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            FI+E+ +  G +       + LSGGQK+R++IA  LV NP I+  DE TS L
Sbjct: 1199 FIAELPE--GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R++IA  L NNPPI+  D+PT  L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGAL 176

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQK+R++IA  LV NP I+  DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQK+R++IA  LV NP I+  DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 50  ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
           +L  LGL +  +     LSGG+++R++IA  L N P ++F DEPT  L  A
Sbjct: 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQ++R++IA  L NNPPI+  D+PT  L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWAL 176

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +LSGGQ++R+SIA  L   P ++ FDEPTS L
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQK+R++IA  L+ NP I+  DE TS L
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSAL 545

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGGQK+R++IA  L+ NP I+  DE TS L
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSAL 514

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L  + L+ +       LSGGQ++R+++A  L   P ++ FDEP + +
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+ + LGL E        LSGGQ++R+++   +V  P +   DEP S L
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           G++  K   T  LS GQKKR++IA  LV  P ++  DEPT+ L
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I ++L+ +GL         NLSGGQK+RL+IA  L  +   +  DEP S L
Sbjct: 121 IKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSML 171

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+++R+++A  LV NP I+  DEP S L
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSAL 158

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+ + LGL E        LSGGQ++R+++   ++  P +   DEP S L
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNL 173

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E++  L L+        +LSGG+ +R++IA  L+ N    FFDEP+S L
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	8e-14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-08
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-11
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-11
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-11
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-10
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-10
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	4e-10
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	4e-10
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-10
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	6e-10
1b0u_A	262	Histidine permease; ABC transporter, transport pro	1e-09
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-09
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-09
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-08
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	6e-08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-07
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-07
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	4e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-06
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	7e-06
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	5e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	6e-05
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-04
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	5e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 64.9 bits (159), Expect = 8e-14
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +    +  GL E      S  S G  ++L IA  L+ NP +   DEPTS
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + +E+L  LG+ +       +LSGG+ +R++IA  L+ +  I   DEP++ L
Sbjct: 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYL 502

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
             E++  L L+         LSGG+ +R++IA  L+      FFDEP+S
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           F ++++  L + +       +LSGG+ +R++I L L     I   DEP++ L
Sbjct: 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +   +  L L+         LSGG+ +R +I +  V    +  FDEP+S
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + +E+L  LG+ +      + LSGG+ +R++IA  L+ +  I   DEP++ L
Sbjct: 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E++  L L+        +LSGG+ +R++IA  L+ N    FFDEP+S L
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 59.8 bits (146), Expect = 4e-12
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           I + L+++ + + K  +   LS G  +R+ +A  L+ N  I   D+P  
Sbjct: 115 IMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 46  FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           F  E+   L L     +  ++LSGG+ ++L IA  L     +   D+P+S L
Sbjct: 365 FFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL 416

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+ + L +        + LSGG  +RL +A  L+    +  FD+P+S L
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYL 169

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  D+ TS L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+LD +GL++       +LSGGQ +R++IA  L   P IM FDEPTS L
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 57.2 bits (139), Expect = 7e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           ++L  +G+          LS G+K+R+ IA  L+  P ++  DEP +
Sbjct: 144 QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---PLHKAE 101
           +   L   G++  K   T  LS GQKKR++IA  LV  P ++  DEPT+   P+  +E
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 49  EILDTLGLQEHKTTMTSN-LSGGQKKRLSIALELVNNPPIMFFDEPT 94
           E L    L+E       N LSGGQ++R++IA  L NNPPI+  D+PT
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 54.4 bits (132), Expect = 4e-10
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
            +L  LGL +  +     LSGG+++R++IA  L N P ++F DEPT
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPT 168

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 47  ISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             E+L  L L E         LS GQ   +  +L L + P I+  DEP   +
Sbjct: 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+++R++IA  L+ +P I+ FDE TS L
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSL 186

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 54.4 bits (132), Expect = 6e-10
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQ++R++IA  LVNNP I+ FDE TS L
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 49  EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + L  +G+ E  +     +LSGGQ++R+SIA  L   P ++ FDEPTS L
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 16/59 (27%)

Query: 46  FISEI---LDTL----GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           F+  +   L+T     G++         +SGGQ++RL+IA   + NP I+  DE T+ L
Sbjct: 121 FVENMPDQLNTEVGERGVK---------ISGGQRQRLAIARAFLRNPKILMLDEATASL 170

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 67  LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           LSGG+K+R++IA  ++  P I+  DE TS L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSAL 221

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LD L L        ++LSGGQ++ + IA  + +   ++  DEPTS L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           ++LSGGQ++R++IA  L+ + P++  DE TS L
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 47  ISEILDTLGLQEHKTTMT--SNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           I E    LGL     + +    LSGGQK +L +A      P ++  DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 47  ISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
           I + L   G   E      S LSGG K +L++A  ++ N  I+  DEPT
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
             LSGGQK+RLSIA   +NNPPI+  DE TS
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATS 506

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             LSGGQ++R++IA  L+ + PI+  DE TS L
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSAL 511

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
           +IL+ L L          LSGGQ K + I   L+ NP ++  DEP
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + LSGGQK+R++IA  LV NP I+  DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 65   SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            + LSGGQK+R++IA  LV  P I+  DE TS L
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            N SGGQK+RLSIA  LV  P ++  D+ TS +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 47  ISEILDTLGL--QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---PLHKAE 101
           + + ++ +GL     K  +   LSGG+K+R++IA  +V+ P I+  DEP        K +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176

Query: 102 F 102
            
Sbjct: 177 L 177

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 16/59 (27%)

Query: 46  FISEI---LDTL----GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           FIS      DT     G Q         LSGGQ++ +++A  L+  P ++  D  TS L
Sbjct: 138 FISGFPQGYDTEVGETGNQ---------LSGGQRQAVALARALIRKPRLLILDNATSAL 187

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+ + LG+        + LSGG+++R+++A  LV  P ++  DEP S +
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + +    L ++         LSGG+++R+++A  LV NP I+  DEP S L
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           + E+L  + L+ +       LSGGQ++R+++A  L   P ++ FDEP + +
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           I  +L+  G+ E        LSGGQ++R ++A  L  +P ++  DEP S L
Sbjct: 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL------VNNPPIMFFDEPTSPLH 98
             +    + E K    + LSGG++  L +A  L           ++  DEPT  L 
Sbjct: 231 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 286

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
            +LS GQ++ L+I    + NP I+  DE TS
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATS 520

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 19/77 (24%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV 114
            L          LS G K+ + +A  +++   I+  DEP++              +D   
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA-------------HLDPVT 190

Query: 115 DYTGNRTQNLQQTIRNE 131
                  Q +++T++  
Sbjct: 191 Y------QIIRRTLKQA 201

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           E+   L +          LSG Q++R+++A  LV +P ++  DEP S L
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV-------NNPPIMFFDEPTSPL 97
           ++++   L L +     T+ LSGG+ +R+ +A  ++           ++  DEP + L
Sbjct: 107 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%)

Query: 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALEL------VNNPPIMFFDEPTSPLH 98
          +   G +   T     LSGG++  L +A  L           ++  DEPT  L 
Sbjct: 46 VVWEGKERPLTF----LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 95

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 66  NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           NLSGGQK+R+S+A  + +N  I  FD+P S
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLS 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.96
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
1g6h_A	257	High-affinity branched-chain amino acid transport	99.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.92
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.92
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.9
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.9
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.9
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.88
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.87
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.87
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.87
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.86
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.85
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.83
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.8
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.8
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.8
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.8
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.79
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.78
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.78
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.78
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.77
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.76
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.72
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.69
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.65
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.65
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.65
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.63
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.56
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.53
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.53
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.49
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.47
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.27
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.18
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.94
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.89
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.84
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.82
2og2_A	359	Putative signal recognition particle receptor; nuc	98.76
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.72
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.71
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.68
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.53
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.52
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.5
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.48
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.46
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.42
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.38
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.32
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.21
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.15
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.07
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.03
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.03
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.02
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.8
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.75
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.67
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.64
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.49
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.43
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.39
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.39
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.08
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.04
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.0
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.99
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.29
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.15
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.92
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.86
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.68
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.63
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.47
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.35
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.33
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.26
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.25
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.69
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.65
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.59
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.57
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.64
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	91.51
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.34
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	91.27
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	90.28
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	90.19
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	90.13
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	88.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	87.28
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	84.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	83.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	83.13

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=3.4e-29  Score=205.91  Aligned_cols=118  Identities=25%  Similarity=0.328  Sum_probs=100.7

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||++|+.++.....   ....+  ..+++.++|+.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus       114 ~~l~~~~TV~env~~~~~~~~---~~~~~--~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD  188 (366)
T 3tui_C          114 FNLLSSRTVFGNVALPLELDN---TPKDE--VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD  188 (366)
T ss_dssp             CCCCTTSCHHHHHHHHHHHSC---CCHHH--HHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             CccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            468889999999998743221   11122  5568999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .|||+.++..  |||++|.+
T Consensus       189 EPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~---vTHdl~~~~~~aDrv~vl~~  239 (366)
T 3tui_C          189 QATSALDPATTRSILELLKDINRRLGLTILL---ITHEMDVVKRICDCVAVISN  239 (366)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHSCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543      779999   8899999877  99999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.96  E-value=2.8e-29  Score=205.95  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=100.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++.....   ....+  ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        89 ~~l~p~ltV~eni~~~l~~~~---~~~~~--~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD  163 (359)
T 3fvq_A           89 GVLFPHLTVYRNIAYGLGNGK---GRTAQ--ERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD  163 (359)
T ss_dssp             CCCCTTSCHHHHHHTTSTTSS---CCSHH--HHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHHcC---CChHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            468899999999998743211   11122  4568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+      .|.||+|   .|||+.+|..  |||++|.+
T Consensus       164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~---vTHd~~ea~~~aDri~vl~~  214 (359)
T 3fvq_A          164 EPFSALDEQLRRQIREDMIAALRANGKSAVF---VSHDREEALQYADRIAVMKQ  214 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHHCCEEEEEEC
Confidence            999999999999887632      2789999   8999999887  99999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.96  E-value=6e-29  Score=205.39  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=100.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++.....   ....+  ..+++.++++.+|+.+..+++|.+|||||||||+|||||+.+|++||||
T Consensus        84 ~~l~p~ltV~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD  158 (381)
T 3rlf_A           84 YALYPHLSVAENMSFGLKLAG---AKKEV--INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (381)
T ss_dssp             CCCCTTSCHHHHHTHHHHHTT---CCHHH--HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            468999999999998753221   11122  5678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.|++|   .|||+.+|..  |||+++.+
T Consensus       159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~~aDri~vl~~  209 (381)
T 3rlf_A          159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIY---VTHDQVEAMTLADKIVVLDA  209 (381)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999998877433      779999   8899999887  99999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.96  E-value=1.7e-28  Score=190.04  Aligned_cols=121  Identities=25%  Similarity=0.275  Sum_probs=95.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+||++|+.++............+  ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++|||
T Consensus        92 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll  169 (235)
T 3tif_A           92 FNLIPLLTALENVELPLIFKYRGAMSGEE--RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA  169 (235)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSSCCCHHH--HHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CccCCCCcHHHHHHHHHHhhhccCCCHHH--HHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            46788899999999864321100111112  45678899999999875 4999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      |.||++   .|||+..+.- |++++|.+
T Consensus       170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~---vtHd~~~~~~~d~i~~l~~  220 (235)
T 3tif_A          170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV---VTHDINVARFGERIIYLKD  220 (235)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---ECSCHHHHTTSSEEEEEET
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EcCCHHHHHhCCEEEEEEC
Confidence            99999999999998888542      779999   5666665433 99999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=2.7e-28  Score=199.79  Aligned_cols=118  Identities=16%  Similarity=0.253  Sum_probs=99.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++....   .....+  ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        96 ~~l~~~ltv~eni~~~l~~~---~~~~~~--~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  170 (355)
T 1z47_A           96 YALFQHMTVYDNVSFGLREK---RVPKDE--MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD  170 (355)
T ss_dssp             GCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            46889999999999874321   111122  4568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.||++   .|||+.+|..  |+++++.+
T Consensus       171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~  221 (355)
T 1z47_A          171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVF---VTHDQEEALEVADRVLVLHE  221 (355)
T ss_dssp             STTCCSSHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887432      779999   7888888876  99999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=3.2e-28  Score=199.00  Aligned_cols=118  Identities=18%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++.....   ....+  ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus        91 ~~l~~~ltv~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD  165 (353)
T 1oxx_K           91 WALYPNLTAFENIAFPLTNMK---MSKEE--IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD  165 (353)
T ss_dssp             SCCCTTSCHHHHHHGGGTTSS---CCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            468899999999998743211   11112  4567899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.|+++   .|||+.+|..  |+++++.+
T Consensus       166 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~~~~~adri~vl~~  216 (353)
T 1oxx_K          166 EPFSNLDARMRDSARALVKEVQSRLGVTLLV---VSHDPADIFAIADRVGVLVK  216 (353)
T ss_dssp             STTTTSCGGGHHHHHHHHHHHHHHHCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887532      679999   7888888876  99998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=3.5e-28  Score=199.32  Aligned_cols=118  Identities=19%  Similarity=0.271  Sum_probs=98.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++......   ...+  ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus        84 ~~l~~~ltv~eni~~~~~~~~~---~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD  158 (359)
T 2yyz_A           84 YALYPHMTVFENIAFPLRARRI---SKDE--VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD  158 (359)
T ss_dssp             CCCCTTSCHHHHHHGGGSSSCS---HHHH--TTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHhcCC---CHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            4688999999999987432211   1112  3467889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.|+++   .|||+.+|..  |+++++.+
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~~~~~adri~vl~~  209 (359)
T 2yyz_A          159 EPLSNLDANLRMIMRAEIKHLQQELGITSVY---VTHDQAEAMTMASRIAVFNQ  209 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887432      679999   7888888876  99998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=4.5e-28  Score=199.38  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++....   .....+  ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus        90 ~~l~~~ltv~eni~~~~~~~---~~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  164 (372)
T 1g29_1           90 YALYPHMTVYDNIAFPLKLR---KVPRQE--IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD  164 (372)
T ss_dssp             CCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            45889999999999874321   111112  4567899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.|+++   .|||+.+|..  |++++|.+
T Consensus       165 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~  215 (372)
T 1g29_1          165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIY---VTHDQVEAMTMGDRIAVMNR  215 (372)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---ECCCHHHHHHhCCEEEEEeC
Confidence            9999999999998877432      679999   7888888876  99999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.95  E-value=7.1e-28  Score=185.16  Aligned_cols=118  Identities=24%  Similarity=0.285  Sum_probs=94.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||.+|+.++...+.   .....  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        91 ~~l~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  165 (224)
T 2pcj_A           91 HYLIPELTALENVIVPMLKMG---KPKKE--AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD  165 (224)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTT---CCHHH--HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             cccCCCCCHHHHHHhHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            457788999999987642211   11112  3467889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh-cCceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI-RNEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~-~~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||+++   +||+..+. .|++++|.+
T Consensus       166 EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~v---tHd~~~~~~~d~v~~l~~  214 (224)
T 2pcj_A          166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMV---THERELAELTHRTLEMKD  214 (224)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEE---CSCHHHHTTSSEEEEEET
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE---cCCHHHHHhCCEEEEEEC
Confidence            9999999999998888543     6799994   55555552 399998864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.95  E-value=4.6e-28  Score=192.04  Aligned_cols=115  Identities=22%  Similarity=0.232  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ++.+||++|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        97 ~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt  171 (275)
T 3gfo_A           97 LFSASVYQDVSFGAVNM---KLPEDE--IRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT  171 (275)
T ss_dssp             CCSSBHHHHHHHHHHTS---CCCHHH--HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             cccCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            34789999999874321   111122  4568899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.      |.||++   .|||+.++..  |+|++|.+
T Consensus       172 s~LD~~~~~~i~~~l~~l~~~~g~tvi~---vtHdl~~~~~~~drv~~l~~  219 (275)
T 3gfo_A          172 AGLDPMGVSEIMKLLVEMQKELGITIII---ATHDIDIVPLYCDNVFVMKE  219 (275)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHCCEEEE---EESCCSSGGGGCSEEEEEET
T ss_pred             ccCCHHHHHHHHHHHHHHHhhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999998877432      779999   7788888866  99999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=3.7e-28  Score=199.41  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=99.3

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++....   .....+  ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        84 ~~l~~~ltv~eni~~~~~~~---~~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  158 (362)
T 2it1_A           84 WALYPHMTVYKNIAFPLELR---KAPREE--IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD  158 (362)
T ss_dssp             CCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            46889999999999874321   111122  4567899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+++.+.      |.|+++   .|||+.+|..  |+++++.+
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~  209 (362)
T 2it1_A          159 EPLSNLDALLRLEVRAELKRLQKELGITTVY---VTHDQAEALAMADRIAVIRE  209 (362)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887543      679999   7888888876  99998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.95  E-value=6.6e-28  Score=189.45  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=97.0

Q ss_pred             CCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           12 DSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      +.+++.+||++|+.++. ...   .....+  ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++||
T Consensus       102 ~~l~~~ltv~e~l~~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll  176 (262)
T 1b0u_A          102 FNLWSHMTVLENVMEAPIQVL---GLSKHD--ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL  176 (262)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTT---CCCHHH--HHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             cccCCCCcHHHHHHhhHHHhc---CCCHHH--HHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            45788899999998753 111   111112  34678899999999998 999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.     |.||++   .|||+.++..  |+|++|.+
T Consensus       177 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~  228 (262)
T 1b0u_A          177 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVV---VTHEMGFARHVSSHVIFLHQ  228 (262)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999998888543     679999   6778887765  99998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=7.6e-28  Score=187.22  Aligned_cols=116  Identities=20%  Similarity=0.275  Sum_probs=95.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||++|+.++......     ..  ..+++.++++.+|+.+..++++++||||||||++|||||+++|++||||
T Consensus        79 ~~l~~~ltv~enl~~~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  151 (240)
T 2onk_A           79 YALFPHLSVYRNIAYGLRNVER-----VE--RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCCCTTSCHHHHHHTTCTTSCH-----HH--HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             CccCCCCcHHHHHHHHHHHcCC-----ch--HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            3467889999999986422111     11  2457888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .+||+.++..  |++++|.+
T Consensus       152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~d~i~~l~~  202 (240)
T 2onk_A          152 EPLSAVDLKTKGVLMEELRFVQREFDVPILH---VTHDLIEAAMLADEVAVMLN  202 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887532      679999   6677777655  99998864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.95  E-value=1.1e-27  Score=188.73  Aligned_cols=118  Identities=25%  Similarity=0.344  Sum_probs=97.0

Q ss_pred             CCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+||++|+.++. ...   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus       109 ~~l~~~~tv~e~l~~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL  183 (263)
T 2olj_A          109 FNLFPHMTVLNNITLAPMKVR---KWPREK--AEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF  183 (263)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTS---CCCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            45778899999998753 111   111112  346788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.     |.||++   .|||+.++.+  |++++|.+
T Consensus       184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~  234 (263)
T 2olj_A          184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVV---VTHEMGFAREVGDRVLFMDG  234 (263)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            99999999999998888543     679999   6778888765  99998864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=5.3e-28  Score=199.08  Aligned_cols=118  Identities=17%  Similarity=0.242  Sum_probs=95.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++.....   ....+  ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus        92 ~~l~~~ltv~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  166 (372)
T 1v43_A           92 YAVWPHMTVYENIAFPLKIKK---FPKDE--IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  166 (372)
T ss_dssp             -----CCCHHHHHHTTCC--C---CCHHH--HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            457899999999998743211   11112  4567899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+.+.+.      |.|+++   .|||+.+|..  |+++++.+
T Consensus       167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~  217 (372)
T 1v43_A          167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY---VTHDQVEAMTMGDRIAVMNR  217 (372)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887543      679999   7888888876  99998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.95  E-value=1.2e-27  Score=195.44  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=97.8

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+.+||++|+.++....   .  ...  . +++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus        81 ~~l~~~ltv~enl~~~~~~~---~--~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD  152 (348)
T 3d31_A           81 YSLFPHMNVKKNLEFGMRMK---K--IKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD  152 (348)
T ss_dssp             CCCCTTSCHHHHHHHHHHHH---C--CCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHHc---C--CCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            45789999999999864221   1  112  2 67889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+..+..+.+.++      |.|+++   .|||+.++..  |+++++.+
T Consensus       153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~---vTHd~~~~~~~adri~vl~~  203 (348)
T 3d31_A          153 EPLSALDPRTQENAREMLSVLHKKNKLTVLH---ITHDQTEARIMADRIAVVMD  203 (348)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE---EESCHHHHHHHCSEEEEESS
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887542      679999   7788888876  99999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=2.1e-27  Score=186.34  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=96.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||++|+.++....   .....+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        97 ~~l~~~ltv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD  171 (256)
T 1vpl_A           97 AGAYRNMQGIEYLRFVAGFY---ASSSSE--IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  171 (256)
T ss_dssp             CCCCTTSBHHHHHHHHHHHH---CCCHHH--HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCCCCcHHHHHHHHHHHc---CCChHH--HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            35678899999998753221   111111  3457889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       172 EPts~LD~~~~~~l~~~l~~l~~~g~tiii---vtHd~~~~~~~~d~v~~l~~  221 (256)
T 1vpl_A          172 EPTSGLDVLNAREVRKILKQASQEGLTILV---SSHNMLEVEFLCDRIALIHN  221 (256)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEE---EECCHHHHTTTCSEEEEEET
T ss_pred             CCccccCHHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHHCCEEEEEEC
Confidence            9999999999998888543     679999   6677777765  99998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=1.6e-27  Score=187.82  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=97.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc------CC
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN------NP   85 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~------~P   85 (137)
                      +.+++.+||.+|+.++....     ....  ..+++.++++.+|+.+..++++.+||||||||++|||||++      +|
T Consensus        94 ~~~~~~~tv~e~l~~~~~~~-----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p  166 (266)
T 4g1u_C           94 SELAFPFSVSEVIQMGRAPY-----GGSQ--DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP  166 (266)
T ss_dssp             CCCCSCCBHHHHHHGGGTTS-----CSTT--HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred             CccCCCCCHHHHHHhhhhhc-----CcHH--HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence            34567899999999864321     1122  45678899999999999999999999999999999999999      99


Q ss_pred             CEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           86 PIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        86 ~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ++|||||||+|||+.++..+++.+.      +.||++   .|||+.++..  |+|++|.+
T Consensus       167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~---vtHdl~~~~~~~d~v~vl~~  223 (266)
T 4g1u_C          167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC---VLHDLNLAALYADRIMLLAQ  223 (266)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE---EEcCHHHHHHhCCEEEEEEC
Confidence            9999999999999999998888543      358999   7888888876  99999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.95  E-value=1.9e-27  Score=186.05  Aligned_cols=122  Identities=17%  Similarity=0.200  Sum_probs=95.7

Q ss_pred             CCCCCCCHHHHHHhhhhh-hhHH--h-hh----hcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317           13 SMDPKKTPLTRMQISNGM-MVLA--A-MF----NQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN   84 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~-~~~~--~-~~----~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~   84 (137)
                      .+++.+||.||+.++... ....  . +.    .......+++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        92 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~  171 (257)
T 1g6h_A           92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN  171 (257)
T ss_dssp             GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcC
Confidence            456789999999886422 1000  0 00    01111346788999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |++|||||||+|||+.++..+++.+.     |.||++   .+||+.++..  |++++|.+
T Consensus       172 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~  228 (257)
T 1g6h_A          172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI---IEHRLDIVLNYIDHLYVMFN  228 (257)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCCSTTGGGCSEEEEEET
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            99999999999999999998888543     679999   6677777655  99998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=3.5e-27  Score=182.96  Aligned_cols=117  Identities=18%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+||.||+.++....    .....  ..+++.++++.++ +.+..++++.+||||||||++|||||+.+|++|||
T Consensus        90 ~~l~~~ltv~enl~~~~~~~----~~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL  163 (240)
T 1ji0_A           90 RRIFPELTVYENLMMGAYNR----KDKEG--IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             CCCCTTSBHHHHHHGGGTTC----CCSSH--HHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CccCCCCcHHHHHHHhhhcC----CCHHH--HHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            45778899999998763111    01112  4467788999995 98889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+     .|.||++   .|||+.++..  |++++|.+
T Consensus       164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~  214 (240)
T 1ji0_A          164 DEPSLGLAPILVSEVFEVIQKINQEGTTILL---VEQNALGALKVAHYGYVLET  214 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999999999888854     3679999   6777777655  99998864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.94  E-value=1.6e-26  Score=180.84  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||.+|+.++...... ..........+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        75 ~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  153 (253)
T 2nq2_C           75 FSSPFAYSVLDIVLMGRSTHIN-TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD  153 (253)
T ss_dssp             CCCSSCCBHHHHHHGGGGGGSC-TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred             CccCCCCCHHHHHHHhhhhhcc-cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            3466789999999986421100 000001113467889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.      |.||++   .+||+..+.+  |++++|.+
T Consensus       154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~  204 (253)
T 2nq2_C          154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVF---TTHQPNQVVAIANKTLLLNK  204 (253)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence            9999999999998887532      679999   6778877755  99998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.94  E-value=1.2e-26  Score=182.38  Aligned_cols=115  Identities=19%  Similarity=0.294  Sum_probs=94.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .++.+||++|+.++.... .   ....  ..+++.++++.+|+.  +..++++.+||||||||++|||||+.+|++||||
T Consensus        90 ~~~~~tv~enl~~~~~~~-~---~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD  163 (266)
T 2yz2_A           90 QFFAERVFDEVAFAVKNF-Y---PDRD--PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD  163 (266)
T ss_dssp             GCCCSSHHHHHHHTTTTT-C---TTSC--SHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             hcCCCcHHHHHHHHHHhc-C---CHHH--HHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            456799999999864221 1   1122  346788999999999  8899999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.     |.||++   .+||+..+..  |++++|.+
T Consensus       164 EPts~LD~~~~~~l~~~l~~l~~~g~tii~---vtHd~~~~~~~~d~v~~l~~  213 (266)
T 2yz2_A          164 EPLVGLDREGKTDLLRIVEKWKTLGKTVIL---ISHDIETVINHVDRVVVLEK  213 (266)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCCTTTGGGCSEEEEEET
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998888543     679999   5667776654  99988864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.94  E-value=1.7e-26  Score=179.98  Aligned_cols=121  Identities=17%  Similarity=0.077  Sum_probs=88.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-CcccCccCCC-CCHHHHHHHHHHHHHhcCCCEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-QEHKTTMTSN-LSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-~~~~~~~~~~-LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      +.+++.+|+.+|+.++............+  ..+++.++++.+|+ .+..++++++ ||||||||++|||||+.+|++||
T Consensus        89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll  166 (250)
T 2d2e_A           89 PVEVPGVTIANFLRLALQAKLGREVGVAE--FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV  166 (250)
T ss_dssp             CC-CCSCBHHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE
T ss_pred             CccccCCCHHHHHHHHHHhhccccCCHHH--HHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            45678899999998753211100000011  34578889999999 5788999999 99999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.     |.||+++|   ||+..+.   .|++++|.+
T Consensus       167 LDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt---Hd~~~~~~~~~d~v~~l~~  219 (250)
T 2d2e_A          167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVIT---HYQRILNYIQPDKVHVMMD  219 (250)
T ss_dssp             EECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC---SSSGGGGTSCCSEEEEEET
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe---cCHHHHHHhcCCEEEEEEC
Confidence            999999999999998888543     67999955   5555544   389988864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.93  E-value=4.9e-26  Score=180.56  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             CCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           16 PKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ..+||++|+.++...... ......+  ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus       112 ~~ltv~enl~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt  189 (279)
T 2ihy_A          112 EGERVIDVVISGAFKSIGVYQDIDDE--IRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA  189 (279)
T ss_dssp             TTSBHHHHHHTTC---------CCHH--HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             CCCCHHHHHHhhhhhccccccCCcHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            357999999876321100 0001111  3467889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc-----ccee--eeeccccchhhhhhc--CceEEecC
Q psy317           95 SPLHKAEFTPKYERKV-----DTKV--DYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~-----~~~v--~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|||+.++..+++.+.     |.||  ++   .+||+.++..  |++++|.+
T Consensus       190 s~LD~~~~~~l~~~l~~l~~~g~tv~~ii---vtHd~~~~~~~~d~v~~l~~  238 (279)
T 2ihy_A          190 AGLDFIARESLLSILDSLSDSYPTLAMIY---VTHFIEEITANFSKILLLKD  238 (279)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHCTTCEEEE---EESCGGGCCTTCCEEEEEET
T ss_pred             cccCHHHHHHHHHHHHHHHHCCCEEEEEE---EecCHHHHHHhCCEEEEEEC
Confidence            9999999998888543     6789  99   6778887765  99998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.93  E-value=3.9e-26  Score=175.12  Aligned_cols=114  Identities=13%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+||++|+.++....   ..  ..  ..+++.++++.+|+.+. ++++.+||||||||++|||||+.+|++||||
T Consensus        87 ~~~~~~~tv~enl~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD  158 (214)
T 1sgw_A           87 IIVPRKISVEDYLKAVASLY---GV--KV--NKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD  158 (214)
T ss_dssp             CCCCTTSBHHHHHHHHHHHT---TC--CC--CHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHhc---CC--ch--HHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            34678899999998763211   10  11  24567889999999988 9999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |||+|||+.++..+++.+.     |.+|++   .+||+..+..  |++++++
T Consensus       159 EPts~LD~~~~~~l~~~l~~~~~~g~tiii---vtHd~~~~~~~~d~v~~~~  207 (214)
T 1sgw_A          159 DPVVAIDEDSKHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYS  207 (214)
T ss_dssp             STTTTSCTTTHHHHHHHHHHHHHHHSEEEE---EESSCCTTSSEEEEGGGGB
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEeC
Confidence            9999999999998888543     679999   5566666655  7776654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.93  E-value=2.2e-25  Score=175.58  Aligned_cols=115  Identities=17%  Similarity=0.072  Sum_probs=93.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      ++...+ .+|+.+|+.++....       ..  ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus        81 ~Q~~~l-~~tv~enl~~~~~~~-------~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll  150 (263)
T 2pjz_A           81 PEAYEI-GVTVNDIVYLYEELK-------GL--DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV  150 (263)
T ss_dssp             GGGSCT-TSBHHHHHHHHHHHT-------CC--CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCCCcc-CCcHHHHHHHhhhhc-------ch--HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            333334 889999998753211       12  245688899999999 8899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhccc--eeeeeccccchhhhhhc--C-ceEEecC
Q psy317           89 FFDEPTSPLHKAEFTPKYERKVDT--KVDYTGNRTQNLQQTIR--N-EVCLISD  137 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~~~--~v~~~~~~~~~~~~~~~--~-~~~~~~~  137 (137)
                      ||||||+|||+.++..+++.+...  ||++   .|||+..+..  | ++++|.+
T Consensus       151 lLDEPts~LD~~~~~~l~~~L~~~~~tvii---vtHd~~~~~~~~d~~i~~l~~  201 (263)
T 2pjz_A          151 GLDEPFENVDAARRHVISRYIKEYGKEGIL---VTHELDMLNLYKEYKAYFLVG  201 (263)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHSCSEEEE---EESCGGGGGGCTTSEEEEEET
T ss_pred             EEECCccccCHHHHHHHHHHHHHhcCcEEE---EEcCHHHHHHhcCceEEEEEC
Confidence            999999999999999998876533  8999   6677777655  8 9988854

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.93  E-value=1.5e-25  Score=175.20  Aligned_cols=113  Identities=17%  Similarity=0.294  Sum_probs=93.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC-----
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP-----   86 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~-----   86 (137)
                      +.+++.+||++|+.++....   .    .   .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+     
T Consensus        82 ~~~~~~~tv~e~l~~~~~~~---~----~---~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~  151 (249)
T 2qi9_C           82 QTPPFATPVWHYLTLHQHDK---T----R---TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA  151 (249)
T ss_dssp             CCCCTTCBHHHHHHTTCSST---T----C---HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred             CccCCCCcHHHHHHHhhccC---C----c---HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence            34677899999998752110   0    1   3467789999999999999999999999999999999999999     


Q ss_pred             --EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           87 --IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        87 --iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                        +|||||||+|||+.++..+++.+.     |.||++   .+||+..+..  |++++|.+
T Consensus       152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii---vtHd~~~~~~~~d~v~~l~~  208 (249)
T 2qi9_C          152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM---SSHDLNHTLRHAHRAWLLKG  208 (249)
T ss_dssp             CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence              999999999999999998888543     679999   6677777754  99998863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.92  E-value=1e-24  Score=171.68  Aligned_cols=123  Identities=16%  Similarity=0.084  Sum_probs=92.3

Q ss_pred             CCCCCCCCHHHHHHhhhh-hhhHHhhhh-cchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCE
Q psy317           12 DSMDPKKTPLTRMQISNG-MMVLAAMFN-QSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~-~~~~~~~~~-~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      +.+++.+|+.+|+.++.. ......... ......+++.++++.+|+. ...++++. +||||||||++|||||+.+|++
T Consensus       106 ~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~l  185 (267)
T 2zu0_C          106 PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL  185 (267)
T ss_dssp             CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred             ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCE
Confidence            457888999999986531 110000000 0111345788999999996 57788887 5999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~~~~~  137 (137)
                      |||||||+|||+.++..+++.+.     |.||++   .|||+..+.   .|++++|.+
T Consensus       186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii---vtHd~~~~~~~~~d~v~~l~~  240 (267)
T 2zu0_C          186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFII---VTHYQRILDYIKPDYVHVLYQ  240 (267)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE---ECSSGGGGGTSCCSEEEEEET
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EeeCHHHHHhhcCCEEEEEEC
Confidence            99999999999999999988643     569999   455555553   489988853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.92  E-value=2.8e-25  Score=175.34  Aligned_cols=119  Identities=16%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             CCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           13 SMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      .+++ .||++|+.++...... ...  ........+.++++.+  |+....++++.+||||||||++|||||+.+|++||
T Consensus       103 ~l~~-~tv~enl~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll  179 (271)
T 2ixe_A          103 LLFG-RSFRENIAYGLTRTPTMEEI--TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI  179 (271)
T ss_dssp             CCCS-SBHHHHHHTTCSSCCCHHHH--HHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             cccc-ccHHHHHhhhcccCChHHHH--HHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3454 6999999986321100 000  0000122356778888  78888899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||||+|||+.++..+++.+.      |.||++   .|||+..+.. |++++|.+
T Consensus       180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii---vtHd~~~~~~~d~v~~l~~  231 (271)
T 2ixe_A          180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLL---ITQQLSLAERAHHILFLKE  231 (271)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE---ECSCHHHHTTCSEEEEEET
T ss_pred             EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE---EeCCHHHHHhCCEEEEEEC
Confidence            999999999999998888542      669999   5556665544 99998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.92  E-value=1.2e-24  Score=169.58  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=82.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHH
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      .++ ..||++|+.++..     .    .  ..+++.++++.+++.+.           .++++.+||||||||++|||||
T Consensus        93 ~l~-~~tv~enl~~~~~-----~----~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL  160 (247)
T 2ff7_A           93 VLL-NRSIIDNISLANP-----G----M--SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL  160 (247)
T ss_dssp             CCT-TSBHHHHHTTTCT-----T----C--CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred             ccc-cccHHHHHhccCC-----C----C--CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence            344 4799999987521     0    0  12234556666666544           3455689999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      +.+|++|||||||+|||+.++..+++.+.    |.||+++|   ||+..+.. |++++|.+
T Consensus       161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivt---H~~~~~~~~d~v~~l~~  218 (247)
T 2ff7_A          161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA---HRLSTVKNADRIIVMEK  218 (247)
T ss_dssp             TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEEC---SSGGGGTTSSEEEEEET
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe---CCHHHHHhCCEEEEEEC
Confidence            99999999999999999999999888554    67999955   55554444 99998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.90  E-value=4.2e-24  Score=171.74  Aligned_cols=123  Identities=19%  Similarity=0.247  Sum_probs=84.9

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      ++...+...||++|+.++.........  ........+.+.++.+  |++...++++.+||||||||++|||||+.+|+|
T Consensus       134 ~Q~~~lf~~Tv~eNi~~~~~~~~~~~~--~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i  211 (306)
T 3nh6_A          134 PQDTVLFNDTIADNIRYGRVTAGNDEV--EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI  211 (306)
T ss_dssp             CSSCCCCSEEHHHHHHTTSTTCCHHHH--HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             ecCCccCcccHHHHHHhhcccCCHHHH--HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence            344444467999999986421100000  0000000112233333  455556777889999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||||||+|||+.+...+++.+.    +.||++   .+|++..+.. |+|++|.+
T Consensus       212 LlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~---itH~l~~~~~aD~i~vl~~  263 (306)
T 3nh6_A          212 ILLDEATSALDTSNERAIQASLAKVCANRTTIV---VAHRLSTVVNADQILVIKD  263 (306)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEE---ECCSHHHHHTCSEEEEEET
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE---EEcChHHHHcCCEEEEEEC
Confidence            99999999999999998887554    679999   5667766666 99998864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.90  E-value=9e-24  Score=165.69  Aligned_cols=110  Identities=18%  Similarity=0.201  Sum_probs=82.4

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHH
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      .++ ..||++|+.++..    .    ..   .+++.+.++.+++.+.           .++++.+||||||||++|||||
T Consensus       103 ~l~-~~tv~enl~~~~~----~----~~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL  170 (260)
T 2ghi_A          103 ILF-NETIKYNILYGKL----D----AT---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL  170 (260)
T ss_dssp             CCC-SEEHHHHHHTTCT----T----CC---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred             ccc-ccCHHHHHhccCC----C----CC---HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            344 4799999987521    0    01   1244556676666443           3467889999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      +.+|++|||||||+|||+.++..+++.+.    +.||+++||   |+..+.. |++++|.+
T Consensus       171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH---~~~~~~~~d~i~~l~~  228 (260)
T 2ghi_A          171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH---RLSTISSAESIILLNK  228 (260)
T ss_dssp             HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECS---SGGGSTTCSEEEEEET
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcC---CHHHHHhCCEEEEEEC
Confidence            99999999999999999999998887543    679999555   4544433 99998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.90  E-value=7.4e-24  Score=164.05  Aligned_cols=117  Identities=18%  Similarity=0.182  Sum_probs=82.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHH---HHHHHcCCC-----cccCccCCCCCHHHHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFIS---EILDTLGLQ-----EHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~---~~L~~lgL~-----~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      ++...++.+|+++|+.++....       .+  ..+++.   ++++.+++.     ...++++.+||||||||++|||||
T Consensus        72 ~Q~~~~~~~tv~enl~~~~~~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL  142 (237)
T 2cbz_A           72 PQQAWIQNDSLRENILFGCQLE-------EP--YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  142 (237)
T ss_dssp             CSSCCCCSEEHHHHHHTTSCCC-------TT--HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             cCCCcCCCcCHHHHhhCccccC-------HH--HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            3334456899999998753211       01  111111   123333332     235788999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhh-------ccceeeeeccccchhhhhhcCceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERK-------VDTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +.+|++|||||||+|||+.++..+++.+       .+.||+++||....+.  ..|++++|.+
T Consensus       143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~l~~  203 (237)
T 2cbz_A          143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIVMSG  203 (237)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEEEET
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEEEeC
Confidence            9999999999999999999999998866       2679999665544332  2499998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.90  E-value=2.8e-24  Score=166.70  Aligned_cols=110  Identities=18%  Similarity=0.203  Sum_probs=84.1

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHHHHHHh
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~IArAL~   82 (137)
                      +++ .|+++|+.++...    .    .  ..+++.++++.+++.+..+           +++.+||||||||++|||||+
T Consensus        87 l~~-~tv~enl~~~~~~----~----~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~  155 (243)
T 1mv5_A           87 IMA-GTIRENLTYGLEG----D----Y--TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL  155 (243)
T ss_dssp             CCC-EEHHHHTTSCTTS----C----S--CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             ccc-ccHHHHHhhhccC----C----C--CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence            444 6999999875210    1    1  1235667888888876554           346799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhh-cCceEEecC
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTI-RNEVCLISD  137 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~-~~~~~~~~~  137 (137)
                      ++|++|||||||+|||+.++..+++.+.    +.||+++||   |+..+. .|++++|.+
T Consensus       156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH---~~~~~~~~d~v~~l~~  212 (243)
T 1mv5_A          156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH---RLSTIVDADKIYFIEK  212 (243)
T ss_dssp             HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECC---SHHHHHHCSEEEEEET
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeC---ChHHHHhCCEEEEEEC
Confidence            9999999999999999999998887543    679999554   555443 399998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.90  E-value=3.2e-23  Score=159.64  Aligned_cols=74  Identities=16%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc-CceEE
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR-NEVCL  134 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~-~~~~~  134 (137)
                      ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+     .+.||+++|   ||+..+.. |++++
T Consensus       125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vt---H~~~~~~~~d~v~~  201 (229)
T 2pze_A          125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKMEHLKKADKILI  201 (229)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEEC---CCHHHHHHCSEEEE
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEc---CChHHHHhCCEEEE
Confidence            4457899999999999999999999999999999999999999998852     267999955   55554433 99998


Q ss_pred             ecC
Q psy317          135 ISD  137 (137)
Q Consensus       135 ~~~  137 (137)
                      |.+
T Consensus       202 l~~  204 (229)
T 2pze_A          202 LHE  204 (229)
T ss_dssp             EET
T ss_pred             EEC
Confidence            864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.89  E-value=7.8e-24  Score=175.15  Aligned_cols=110  Identities=17%  Similarity=0.234  Sum_probs=87.2

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC-----------CCHHHHHHHHHHHHH
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN-----------LSGGQKKRLSIALEL   81 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~-----------LSgGqkqrv~IArAL   81 (137)
                      .+| .+||++|+.+..          ..  ..+++.++++.+++.+..++++.+           |||||||||+|||||
T Consensus       104 ~lf-~~tv~enl~~~~----------~~--~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL  170 (390)
T 3gd7_A          104 FIF-SGTFRKNLDPNA----------AH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV  170 (390)
T ss_dssp             CCC-SEEHHHHHCTTC----------CS--CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred             ccC-ccCHHHHhhhcc----------cc--CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence            344 479999996421          01  234677899999999999999988           999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      +.+|++|||||||+|||+..+..+.+.+.    +.|++++||..+.+.  ..||++++.+
T Consensus       171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~--~aDri~vl~~  228 (390)
T 3gd7_A          171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML--ECDQFLVIEE  228 (390)
T ss_dssp             HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT--TCSEEEEEET
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH--hCCEEEEEEC
Confidence            99999999999999999999998887654    669999555433221  1399998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.88  E-value=2.8e-23  Score=177.62  Aligned_cols=111  Identities=19%  Similarity=0.217  Sum_probs=92.2

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ...+||.+|+.+....    ..  ..  ....+.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       342 ~~~~tv~~~l~~~~~~----~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT  413 (538)
T 3ozx_A          342 NYDGTVQQYLENASKD----AL--ST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS  413 (538)
T ss_dssp             CCSSBHHHHHHHHCSS----TT--CT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             ccCCCHHHHHHHhhhh----cc--ch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            3478999998763211    00  01  2245778899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +|||+.++..+++.+.      |.||++   .+||+.++..  |||+++.
T Consensus       414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~---vsHdl~~~~~~aDri~vl~  460 (538)
T 3ozx_A          414 SYLDVEERYIVAKAIKRVTRERKAVTFI---IDHDLSIHDYIADRIIVFK  460 (538)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence            9999999998887543      679999   8899999887  9999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.5e-22  Score=175.30  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT   94 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt   94 (137)
                      ....|+.+++....  .  ..   ..  ....+.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       425 ~~~~tv~e~~~~~~--~--~~---~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT  495 (608)
T 3j16_B          425 KFPGTVRQLFFKKI--R--GQ---FL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS  495 (608)
T ss_dssp             CCCSBHHHHHHHHC--S--ST---TT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             cCCccHHHHHHHHh--h--cc---cc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            34568998875321  1  01   01  2345678899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEec
Q psy317           95 SPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        95 sgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      +|||+.++..+++.+      .|.||++   .+||+.++..  |||+++.
T Consensus       496 ~gLD~~~~~~i~~ll~~l~~~~g~tvii---vtHdl~~~~~~aDrvivl~  542 (608)
T 3j16_B          496 AYLDSEQRIICSKVIRRFILHNKKTAFI---VEHDFIMATYLADKVIVFE  542 (608)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEECE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence            999999998877643      2779999   8899999887  9999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.87  E-value=2.7e-22  Score=173.66  Aligned_cols=111  Identities=16%  Similarity=0.250  Sum_probs=91.7

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      .++.+||.+++....  .  ...  .   ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus       428 ~~~~~tv~e~~~~~~--~--~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP  498 (607)
T 3bk7_A          428 AEYEGTVYELLSKID--S--SKL--N---SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP  498 (607)
T ss_dssp             CCCSSBHHHHHHHHH--H--HHH--H---CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred             CCCCCcHHHHHHhhh--c--cCC--C---HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            346789988876431  1  110  1   134677899999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |+|||+.++..+++.+.      |.||++   .+||+.++..  ||++++.
T Consensus       499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vsHd~~~~~~~adrv~vl~  546 (607)
T 3bk7_A          499 SAYLDVEQRLAVSRAIRHLMEKNEKTALV---VEHDVLMIDYVSDRLIVFE  546 (607)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEc
Confidence            99999999998887533      679999   7888888876  9999885

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.87  E-value=4.6e-22  Score=158.62  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=59.7

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhh-cCceEE
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTI-RNEVCL  134 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~-~~~~~~  134 (137)
                      ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+     .+.||+++|   ||+..+. .|++++
T Consensus       154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivt---Hd~~~~~~~d~i~~  230 (290)
T 2bbs_A          154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKMEHLKKADKILI  230 (290)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEEC---CCHHHHHHSSEEEE
T ss_pred             cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEe---cCHHHHHcCCEEEE
Confidence            4456899999999999999999999999999999999999999998853     267999955   4554443 399998


Q ss_pred             ecC
Q psy317          135 ISD  137 (137)
Q Consensus       135 ~~~  137 (137)
                      |.+
T Consensus       231 l~~  233 (290)
T 2bbs_A          231 LHE  233 (290)
T ss_dssp             EET
T ss_pred             EEC
Confidence            864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.87  E-value=2.6e-22  Score=171.39  Aligned_cols=111  Identities=17%  Similarity=0.249  Sum_probs=91.3

Q ss_pred             CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317           14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP   93 (137)
Q Consensus        14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP   93 (137)
                      ..+.+||.+++....  . . ..   .  ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus       358 ~~~~~tv~~~~~~~~--~-~-~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP  428 (538)
T 1yqt_A          358 ADYEGTVYELLSKID--A-S-KL---N--SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP  428 (538)
T ss_dssp             CCCSSBHHHHHHHHH--H-H-HH---T--CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred             CCCCCcHHHHHHhhh--c-c-CC---C--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            346789988775321  1 1 11   1  234677899999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317           94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus        94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                      |+|||+.++..+++.+.      |.+|++   .+||+.++..  ||++++.
T Consensus       429 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~---vsHd~~~~~~~~drv~vl~  476 (538)
T 1yqt_A          429 SAYLDVEQRLAVSRAIRHLMEKNEKTALV---VEHDVLMIDYVSDRLMVFE  476 (538)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence            99999999998888532      779999   7888888876  9999885

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.87  E-value=3.7e-22  Score=171.14  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=84.5

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IA   78 (137)
                      |+...+.+.|++||+.++..   . .    .  .++++.+.++.+|+.+.           .++++.+||||||||++||
T Consensus       423 ~Q~~~l~~~tv~eni~~~~~---~-~----~--~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA  492 (582)
T 3b60_A          423 SQNVHLFNDTVANNIAYART---E-E----Y--SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA  492 (582)
T ss_dssp             CSSCCCCSSBHHHHHHTTTT---S-C----C--CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCCHHHHHhccCC---C-C----C--CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            34433334699999997531   0 0    1  12345566666666543           3456689999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|++|||||||+|||+.++..+.+.+.    |.|+++.||+.+.+.  ..|+++++.+
T Consensus       493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l~~  553 (582)
T 3b60_A          493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE--QADEIVVVED  553 (582)
T ss_dssp             HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT--TCSEEEEEET
T ss_pred             HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH--hCCEEEEEEC
Confidence            99999999999999999999999998887543    679999655554332  1399998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.87  E-value=2e-22  Score=173.26  Aligned_cols=123  Identities=20%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      |+...+.+.|++||+.++.........  .+......+.+.++.+  |++...++++.+||||||||++|||||+++|++
T Consensus       423 ~Q~~~lf~~tv~eni~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i  500 (587)
T 3qf4_A          423 PQETVLFSGTIKENLKWGREDATDDEI--VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV  500 (587)
T ss_dssp             CSSCCCCSEEHHHHHTTTCSSCCHHHH--HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred             CCCCcCcCccHHHHHhccCCCCCHHHH--HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence            444444456999999876321000000  0000000112233333  566667888999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||||||++||+.+...+.+.+.    |.|+++   .+|++..+.. |+++++.+
T Consensus       501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~---itH~l~~~~~~d~i~vl~~  552 (587)
T 3qf4_A          501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFI---ITQKIPTALLADKILVLHE  552 (587)
T ss_dssp             EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE---EESCHHHHTTSSEEEEEET
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE---EecChHHHHhCCEEEEEEC
Confidence            99999999999999998888543    679999   5555555545 99998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.87  E-value=3.5e-22  Score=171.28  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=84.4

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCccc-----------CccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK-----------TTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~-----------~~~~~~LSgGqkqrv~IA   78 (137)
                      |+...+.+.|++||+.++..    ..    .  .++++.++++.+|+.+..           ++++.+||||||||++||
T Consensus       423 ~Q~~~l~~~tv~eni~~~~~----~~----~--~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA  492 (582)
T 3b5x_A          423 SQNVHLFNDTIANNIAYAAE----GE----Y--TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA  492 (582)
T ss_pred             cCCCccccccHHHHHhccCC----CC----C--CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence            34333334699999987531    00    1  123455667777665443           445689999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      |||+++|++|||||||+|||+.++..+.+.+.    |.|+++.||+.+.+.  ..|+++++.+
T Consensus       493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l~~  553 (582)
T 3b5x_A          493 RALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE--QADEILVVDE  553 (582)
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence            99999999999999999999999998887543    679999555544432  2399998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.87  E-value=8.3e-22  Score=168.98  Aligned_cols=114  Identities=25%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+.+.|++||+.++...        .   .++++.+.++..++           +...++++.+||||||||++||
T Consensus       421 ~Q~~~l~~~tv~eni~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA  489 (578)
T 4a82_A          421 QQDNILFSDTVKENILLGRPT--------A---TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA  489 (578)
T ss_dssp             CSSCCCCSSBHHHHHGGGCSS--------C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred             eCCCccCcccHHHHHhcCCCC--------C---CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence            344434456999999876310        0   11233344444444           3344556679999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||+++|++|||||||+|||+.+...+.+.+    .+.|+++.|   |++..+.. |+++++.+
T Consensus       490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it---H~l~~~~~~d~i~~l~~  550 (578)
T 4a82_A          490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA---HRLSTITHADKIVVIEN  550 (578)
T ss_dssp             HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC---SSGGGTTTCSEEEEEET
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe---cCHHHHHcCCEEEEEEC
Confidence            9999999999999999999999998887754    367999954   55555444 99998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.86  E-value=3.8e-22  Score=172.70  Aligned_cols=89  Identities=22%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN  119 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~  119 (137)
                      +++.++++.+|+.+..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.+.     |.||++   
T Consensus       207 ~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi---  283 (607)
T 3bk7_A          207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV---  283 (607)
T ss_dssp             SCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---
T ss_pred             HHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE---
Confidence            356789999999999999999999999999999999999999999999999999999998877544     779999   


Q ss_pred             ccchhhhhhc--CceEEec
Q psy317          120 RTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       120 ~~~~~~~~~~--~~~~~~~  136 (137)
                      .+||+.++..  |+|++|.
T Consensus       284 vsHdl~~~~~~adri~vl~  302 (607)
T 3bk7_A          284 VEHDLAVLDYLSDVIHVVY  302 (607)
T ss_dssp             ECSCHHHHHHHCSEEEEEE
T ss_pred             EecChHHHHhhCCEEEEEC
Confidence            7778887765  9999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.86  E-value=3.4e-22  Score=170.71  Aligned_cols=89  Identities=24%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN  119 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~  119 (137)
                      +++.++++.+|+....++++++|||||||||+|||||+.+|++|||||||++||+.++..+++.+.     |.||++   
T Consensus       137 ~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~---  213 (538)
T 1yqt_A          137 GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV---  213 (538)
T ss_dssp             SCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---
T ss_pred             HHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE---
Confidence            357789999999999999999999999999999999999999999999999999999988877543     779999   


Q ss_pred             ccchhhhhhc--CceEEec
Q psy317          120 RTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       120 ~~~~~~~~~~--~~~~~~~  136 (137)
                      .+||+.++..  |+|++|.
T Consensus       214 vsHd~~~~~~~~dri~vl~  232 (538)
T 1yqt_A          214 VEHDLAVLDYLSDIIHVVY  232 (538)
T ss_dssp             ECSCHHHHHHHCSEEEEEE
T ss_pred             EeCCHHHHHHhCCEEEEEc
Confidence            6778888766  9999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.86  E-value=5.3e-22  Score=170.88  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHHH
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSIA   78 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~IA   78 (137)
                      ++...+.+.|++||+.++..    ..    .   ++++.+.++.+++.+..+           +.+.+||||||||++||
T Consensus       435 ~Q~~~lf~~tv~eni~~~~~----~~----~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA  503 (598)
T 3qf4_B          435 LQDTILFSTTVKENLKYGNP----GA----T---DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT  503 (598)
T ss_dssp             CTTCCCCSSBHHHHHHSSST----TC----C---TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred             eCCCccccccHHHHHhcCCC----CC----C---HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence            34444446799999987631    00    1   122344555555544433           34479999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||+++|++|||||||||||+.+...+.+.+.    |.|+++.||+.+   .+.. |+++++.+
T Consensus       504 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~---~~~~~d~i~~l~~  564 (598)
T 3qf4_B          504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN---TIKNADLIIVLRD  564 (598)
T ss_dssp             HHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT---HHHHCSEEEEECS
T ss_pred             HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH---HHHcCCEEEEEEC
Confidence            99999999999999999999999998877543    779999555554   4444 99998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.4e-21  Score=169.27  Aligned_cols=90  Identities=22%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317           44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG  118 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~  118 (137)
                      .+++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.++     |.||++  
T Consensus       199 ~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~--  276 (608)
T 3j16_B          199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC--  276 (608)
T ss_dssp             HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE--
T ss_pred             HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE--
Confidence            3578899999999999999999999999999999999999999999999999999999988777543     679999  


Q ss_pred             cccchhhhhhc--CceEEec
Q psy317          119 NRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~  136 (137)
                       .+||+.++..  |+|++|.
T Consensus       277 -vtHdl~~~~~~~drv~vl~  295 (608)
T 3j16_B          277 -VEHDLSVLDYLSDFVCIIY  295 (608)
T ss_dssp             -ECSCHHHHHHHCSEEEEEE
T ss_pred             -EeCCHHHHHHhCCEEEEEe
Confidence             7788888776  9999884

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.86  E-value=5.4e-22  Score=172.44  Aligned_cols=117  Identities=14%  Similarity=0.154  Sum_probs=76.2

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhc-c---hhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCC--E
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQ-S---QAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPP--I   87 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~-~---~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~--i   87 (137)
                      ++.+|+.+|+.+............. .   .+.. ...++++.+||.+. .++++.+|||||||||+|||||+.+|+  +
T Consensus       147 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l  225 (670)
T 3ux8_A          147 VTAMSVTEALAFFDGLELTEKEAQIARLILREIR-DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  225 (670)
T ss_dssp             ----CC--------------------------CH-HHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE
T ss_pred             ccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH-HHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            4568999998864322111100000 0   0011 12246899999875 689999999999999999999999998  9


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      |||||||+|||+.++..+++.+.     |.||++   .|||+..+.. |++++|
T Consensus       226 LlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~---vtHd~~~~~~~d~ii~l  276 (670)
T 3ux8_A          226 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV---VEHDEDTMLAADYLIDI  276 (670)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE---ECCCHHHHHHCSEEEEE
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHhhCCEEEEe
Confidence            99999999999999999888543     679999   6667766544 999988

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.85  E-value=5e-21  Score=166.33  Aligned_cols=105  Identities=21%  Similarity=0.223  Sum_probs=84.2

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE   92 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE   92 (137)
                      .+|+.+|+.+....         .  ..+++.+.+..+|+.. ..++++.+|||||||||+|||||+.+|   ++|||||
T Consensus       504 ~ltv~e~l~~~~~~---------~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE  572 (670)
T 3ux8_A          504 DMTVEDALDFFASI---------P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE  572 (670)
T ss_dssp             TSBHHHHHHHTTTC---------H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES
T ss_pred             hCCHHHHHHHHHHh---------h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC
Confidence            47888888754211         1  1234567888999965 468999999999999999999999987   4999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ||+|||+.++..+++.+.     |.||++   .|||+..+.. |+|++|
T Consensus       573 Pt~~LD~~~~~~i~~~l~~l~~~g~tvi~---vtHd~~~~~~~d~i~~l  618 (670)
T 3ux8_A          573 PTTGLHVDDIARLLDVLHRLVDNGDTVLV---IEHNLDVIKTADYIIDL  618 (670)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHTTCSEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHhCCEEEEe
Confidence            999999999998888543     779999   6777776654 999998

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.85  E-value=2.2e-21  Score=165.89  Aligned_cols=88  Identities=22%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT  121 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~  121 (137)
                      ++.++++.+|+....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.++    |.||++   .+
T Consensus       118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~---vs  194 (538)
T 3ozx_A          118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV---VD  194 (538)
T ss_dssp             CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE---EC
T ss_pred             HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE---EE
Confidence            56789999999999999999999999999999999999999999999999999999988877544    679999   67


Q ss_pred             chhhhhhc--CceEEec
Q psy317          122 QNLQQTIR--NEVCLIS  136 (137)
Q Consensus       122 ~~~~~~~~--~~~~~~~  136 (137)
                      ||+.++..  |+|+++.
T Consensus       195 Hdl~~~~~~~d~i~vl~  211 (538)
T 3ozx_A          195 HDLIVLDYLTDLIHIIY  211 (538)
T ss_dssp             SCHHHHHHHCSEEEEEE
T ss_pred             eChHHHHhhCCEEEEec
Confidence            77777666  9998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.83  E-value=8.9e-21  Score=171.29  Aligned_cols=110  Identities=19%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      .+++.+|+.+|+.+.  ..       ..   .+++.++++.+|+. ...++++++||||||||++|||||+.+|++||||
T Consensus       506 ~~~~~ltv~e~l~~~--~~-------~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD  573 (986)
T 2iw3_A          506 GTHSDTSVLDFVFES--GV-------GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD  573 (986)
T ss_dssp             CCCTTSBHHHHHHTT--CS-------SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ccccCCcHHHHHHHh--hc-------CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            456789999999751  10       01   34677899999995 6789999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++..+++.+.  |.||++   .+||+.++..  |++++|.+
T Consensus       574 EPTs~LD~~~~~~l~~~L~~~g~tvIi---vSHdl~~l~~~adrii~L~~  620 (986)
T 2iw3_A          574 EPTNHLDTVNVAWLVNYLNTCGITSIT---ISHDSVFLDNVCEYIINYEG  620 (986)
T ss_dssp             STTTTCCHHHHHHHHHHHHHSCSEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             CCccCCCHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999999988665  789999   6777777765  89988753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.81  E-value=5.8e-20  Score=169.57  Aligned_cols=117  Identities=20%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~I   77 (137)
                      .|+...+.+.|+++|+.++.....       .  ..+.+.+.++..++.+           .....+.+||||||||++|
T Consensus      1112 v~Q~~~l~~~ti~eNi~~~~~~~~-------~--~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A         1112 VSQEPILFDCSIAENIAYGDNSRV-------V--SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp             EESSCCCCSSBHHHHHTCCCSSCC-------C--CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred             ECCCCccccccHHHHHhccCCCCC-------C--CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence            345555667899999987632110       0  1122333344444332           3344567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||+++|+||||||||+|||+.+...+.+.+.    |.||++   .+||+..+.. |+++++.+
T Consensus      1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~---isH~l~~i~~~dri~vl~~ 1244 (1284)
T 3g5u_A         1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV---IAHRLSTIQNADLIVVIQN 1244 (1284)
T ss_dssp             HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE---ECSCTTGGGSCSEEEEEET
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE---EecCHHHHHcCCEEEEEEC
Confidence            999999999999999999999999988887554    679999   5555555544 99998864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.80  E-value=1e-19  Score=167.90  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=82.3

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~   82 (137)
                      ++...+.+.|++||+.++.... ..    ++  ..+     .+.+.++.+  |++...+.++.+||||||||++|||||+
T Consensus       470 ~Q~~~l~~~ti~eNi~~g~~~~-~~----~~--~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          470 SQEPVLFATTIAENIRYGREDV-TM----DE--IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             CSSCCCCSSCHHHHHHHHCSSC-CH----HH--HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             cCCCccCCccHHHHHhcCCCCC-CH----HH--HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            4444444569999999864210 00    00  111     122334443  3444556778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317           83 NNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      .+|+|||||||||+||+.+...+.+.+    .|.|+++   .+|++..... |+++++.+
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~---itH~l~~i~~~d~i~vl~~  599 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIV---IAHRLSTVRNADVIAGFDG  599 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEE---ECSCHHHHTTCSEEEECSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEE---EecCHHHHHcCCEEEEEEC
Confidence            999999999999999999988776644    3779999   4555555544 99998864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.80  E-value=2e-19  Score=161.76  Aligned_cols=105  Identities=21%  Similarity=0.237  Sum_probs=84.4

Q ss_pred             CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317           17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE   92 (137)
Q Consensus        17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE   92 (137)
                      .+|+.+++.+....         .  ...++.++|+.+||... .++++.+|||||||||.|||||+.+|   ++|||||
T Consensus       766 ~~tv~eal~f~~~~---------~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDE  834 (916)
T 3pih_A          766 DMTVDEALEFFKNI---------P--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDE  834 (916)
T ss_dssp             SSBHHHHHHHTTTC---------H--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEES
T ss_pred             hCCHHHHHHHHhcc---------h--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEEC
Confidence            46777777653211         1  23466789999999764 58899999999999999999999875   7999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ||+|||+..+..+++.+.     |.||++   .+||+..+.. |++++|
T Consensus       835 PTsGLD~~~~~~L~~lL~~L~~~G~TVIv---I~HdL~~i~~ADrIivL  880 (916)
T 3pih_A          835 PTVGLHFEDVRKLVEVLHRLVDRGNTVIV---IEHNLDVIKNADHIIDL  880 (916)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHTTCSEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhCCEEEEe
Confidence            999999999998888544     779999   6777776655 999988

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.80  E-value=6.4e-20  Score=165.71  Aligned_cols=91  Identities=27%  Similarity=0.308  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCCCc-c-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317           44 SCFISEILDTLGLQE-H-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN  119 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~-~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~  119 (137)
                      .+++.++++.+|+.. . .++++++||||||||+.|||||+.+|++|||||||+|||+.++..+++.+.  +.+|++   
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIi---  953 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVII---  953 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEE---
T ss_pred             HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEE---
Confidence            457889999999975 3 588999999999999999999999999999999999999999999988766  569999   


Q ss_pred             ccchhhhhhc--CceEEecC
Q psy317          120 RTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus       120 ~~~~~~~~~~--~~~~~~~~  137 (137)
                      .+||+.++..  |+++++.+
T Consensus       954 ISHD~e~v~~l~DrVivL~~  973 (986)
T 2iw3_A          954 ITHSAEFTKNLTEEVWAVKD  973 (986)
T ss_dssp             ECSCHHHHTTTCCEEECCBT
T ss_pred             EECCHHHHHHhCCEEEEEEC
Confidence            7788888766  99998864

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.80  E-value=1.6e-19  Score=131.29  Aligned_cols=74  Identities=24%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             cCccCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh
Q psy317           60 KTTMTSNLSGGQKKRLSIA------LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IA------rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~  128 (137)
                      .++++.+||||||||++||      |||+.+|+++||||||+|||+..+..+.+.+.     |.+|+++||.. ++. ..
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~-~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK-DA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG-GG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHH-Hh
Confidence            4678999999999999886      89999999999999999999999998887543     56899966554 222 22


Q ss_pred             cCceEEe
Q psy317          129 RNEVCLI  135 (137)
Q Consensus       129 ~~~~~~~  135 (137)
                      .|+++++
T Consensus       129 ~d~ii~l  135 (148)
T 1f2t_B          129 ADHVIRI  135 (148)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            3898887

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.79  E-value=3.4e-19  Score=160.58  Aligned_cols=87  Identities=24%  Similarity=0.286  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317           46 FISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY  116 (137)
Q Consensus        46 ~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~  116 (137)
                      ++.++|+.+||.. ..++++.+|||||||||.||++|+.+|   ++|||||||+|||+..+..+++.+.     |.||++
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv  903 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV  903 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4567899999987 789999999999999999999999865   9999999999999999998888543     779999


Q ss_pred             eccccchhhhhhc-CceEEe
Q psy317          117 TGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~~  135 (137)
                         .+||+.++.. |+|++|
T Consensus       904 ---isHdl~~i~~aDrIivL  920 (972)
T 2r6f_A          904 ---IEHNLDVIKTADYIIDL  920 (972)
T ss_dssp             ---ECCCHHHHTTCSEEEEE
T ss_pred             ---EcCCHHHHHhCCEEEEE
Confidence               5666666544 999988

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.79  E-value=2.4e-19  Score=165.85  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=87.7

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~I   77 (137)
                      -|+...+.+-|+++|+.++...   ..    .  .++++.+.++..++.+           .......+||||||||++|
T Consensus      1158 V~Qdp~LF~gTIreNI~~gld~---~~----~--sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A         1158 VSQEPTLFDCSIAENIIYGLDP---SS----V--TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp             ECSSCCCCSEEHHHHHSSSSCT---TT----S--CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred             ECCCCEeeCccHHHHHhccCCC---CC----C--CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence            3677777788999999876321   11    1  1234556666666543           2334557899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+.+.+.    +.|+++.+|+.+-+..|  |+|+++.+
T Consensus      1229 ARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~a--D~I~Vld~ 1290 (1321)
T 4f4c_A         1229 ARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA--DCIAVVSN 1290 (1321)
T ss_dssp             HHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTC--SEEEEESS
T ss_pred             HHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhC--CEEEEEEC
Confidence            999999999999999999999999888777554    66999977776644322  99998864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.78  E-value=7e-19  Score=157.06  Aligned_cols=88  Identities=26%  Similarity=0.309  Sum_probs=76.1

Q ss_pred             HHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317           45 CFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN---PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD  115 (137)
Q Consensus        45 ~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~---P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~  115 (137)
                      +++.++|+.+||.. ..++++.+|||||||||.||++|+.+   |++|||||||+|||+..+..+++.+.     |.||+
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            46788999999987 46899999999999999999999996   79999999999999999998887543     77999


Q ss_pred             eeccccchhhhhhc-CceEEe
Q psy317          116 YTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      +   .+||+.++.. |++++|
T Consensus       788 v---isHdl~~i~~aDrii~L  805 (842)
T 2vf7_A          788 A---VEHKMQVVAASDWVLDI  805 (842)
T ss_dssp             E---ECCCHHHHTTCSEEEEE
T ss_pred             E---EcCCHHHHHhCCEEEEE
Confidence            9   5666666633 999988

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.78  E-value=5.7e-19  Score=163.36  Aligned_cols=115  Identities=18%  Similarity=0.125  Sum_probs=84.2

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I   77 (137)
                      -++...+.+-|++||+.++..-    .       .++++.+.++..+           .+........+||||||||++|
T Consensus       497 v~Q~~~Lf~~TI~eNI~~g~~~----~-------~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiai  565 (1321)
T 4f4c_A          497 VSQEPALFNCTIEENISLGKEG----I-------TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI  565 (1321)
T ss_dssp             ECSSCCCCSEEHHHHHHTTCTT----C-------CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHH
T ss_pred             cCCcceeeCCchhHHHhhhccc----c-------hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHH
Confidence            3566677789999999987310    0       1223344444443           3444556678899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      |||+.++|+|||||||||+||+.+...+.+.+    +|.|+++.+|+.+   .... |+++++.+
T Consensus       566 ARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls---~i~~aD~Iivl~~  627 (1321)
T 4f4c_A          566 ARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS---TIRNADLIISCKN  627 (1321)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT---TTTTCSEEEEEET
T ss_pred             HHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH---HHHhCCEEEEeeC
Confidence            99999999999999999999999877666644    4789999555554   3333 89988864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.77  E-value=1.4e-18  Score=156.57  Aligned_cols=116  Identities=14%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHhhhhhhhHHh---hhhc-chhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEE
Q psy317           16 PKKTPLTRMQISNGMMVLAA---MFNQ-SQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIM   88 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~---~~~~-~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iL   88 (137)
                      ..+||.+++.|...+.....   .... -++..+++ +.|..+||... .++.+.+|||||+|||.||++|+.+|  ++|
T Consensus       450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll  528 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY  528 (972)
T ss_dssp             HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred             hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence            46899999998654321110   0000 01134455 46899999875 79999999999999999999999985  999


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ||||||+|||+.....+++.+.     |.||++.+|   |+..... |+|++|
T Consensus       529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH---dl~~i~~ADrIi~L  578 (972)
T 2r6f_A          529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH---DEDTMLAADYLIDI  578 (972)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC---CHHHHHSCSEEEEE
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEec---CHHHHHhCCEEEEe
Confidence            9999999999999998887543     779999554   5544333 999987

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.77  E-value=6.7e-19  Score=143.70  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CccCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc
Q psy317           61 TTMTSNLSGGQKKRLSIALELV------NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~  129 (137)
                      ++++.+||||||||++||+||+      .+|++|||||||+|||+..+..+++.+.     |.||++   .+||+..+..
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~---itH~~~~~~~  350 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF---ITHDREFSEA  350 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEE---EESCHHHHTT
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE---EecchHHHHh
Confidence            5788999999999999999999      7999999999999999999998887544     579999   5666666443


Q ss_pred             -CceEEecC
Q psy317          130 -NEVCLISD  137 (137)
Q Consensus       130 -~~~~~~~~  137 (137)
                       |++++|.+
T Consensus       351 ~d~~~~l~~  359 (365)
T 3qf7_A          351 FDRKLRITG  359 (365)
T ss_dssp             CSCEEEEET
T ss_pred             CCEEEEEEC
Confidence             99998864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=1.3e-18  Score=156.35  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             CCCCCHHHHHHhhhhhhhHHh---hhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCC--EE
Q psy317           15 DPKKTPLTRMQISNGMMVLAA---MFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPP--IM   88 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~---~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~--iL   88 (137)
                      +..+++.+++.+...+.....   ..........+..+.|..+|+... .++++.+|||||||||.|||||+.+|+  +|
T Consensus       409 ~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll  488 (916)
T 3pih_A          409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY  488 (916)
T ss_dssp             HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE
T ss_pred             hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            345788888876433211000   000000012344567889999865 689999999999999999999999887  99


Q ss_pred             EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317           89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ||||||+|||+..+..+++.+.     |.||++   .+||+..+.. |++++|
T Consensus       489 lLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv---VtHd~~~~~~aD~ii~l  538 (916)
T 3pih_A          489 VLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV---VEHDEEVIRNADHIIDI  538 (916)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE---ECCCHHHHHTCSEEEEE
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhCCEEEEE
Confidence            9999999999999998888654     679999   6677766655 999987

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.72  E-value=1.9e-17  Score=147.86  Aligned_cols=89  Identities=24%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----ccee
Q psy317           43 GSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKV  114 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v  114 (137)
                      ..+++. .|..+||... .++++.+|||||||||.||++|+.+|  +++||||||+|||+...+.+++.+.     |.||
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV  434 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL  434 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence            344554 6889999875 79999999999999999999999999  5999999999999999999888433     7799


Q ss_pred             eeeccccchhhhhhc-CceEEe
Q psy317          115 DYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus       115 ~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ++   .+||+..... |+|++|
T Consensus       435 Iv---VeHdl~~l~~aD~ii~l  453 (842)
T 2vf7_A          435 FV---VEHDLDVIRRADWLVDV  453 (842)
T ss_dssp             EE---ECCCHHHHTTCSEEEEE
T ss_pred             EE---EcCCHHHHHhCCEEEEe
Confidence            99   5555553333 999887

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.70  E-value=5.1e-17  Score=132.51  Aligned_cols=66  Identities=24%  Similarity=0.250  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEe
Q psy317           67 LSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ||||||||++||++|+.+|  ++|||||||+|||+..+..+++.+.    +.+|+++   |||++.+.. |+++++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i---tH~~~~~~~~d~i~~l  368 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV---THLAQIAARAHHHYKV  368 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE---CSCHHHHTTCSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---eCcHHHHhhcCeEEEE
Confidence            6999999999999999999  9999999999999999999988665    5799995   455544433 999988

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.69  E-value=1.8e-17  Score=123.05  Aligned_cols=71  Identities=10%  Similarity=-0.085  Sum_probs=63.4

Q ss_pred             ccCccCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc
Q psy317           59 HKTTMTSNLSGGQKKRLSIALE-----LVNNPPIMFFDE--PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        59 ~~~~~~~~LSgGqkqrv~IArA-----L~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~  129 (137)
                      ..++++.+||||||||++||+|     ++.+|++|||||  ||++||+..+..+.+.+.  +.++++++|++||+.++..
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~  148 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE  148 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence            4577888999999999999996     999999999999  999999999999888776  4468999999999888765

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.65  E-value=1.2e-16  Score=135.13  Aligned_cols=72  Identities=24%  Similarity=0.233  Sum_probs=60.9

Q ss_pred             ccCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceE
Q psy317           62 TMTSNL-SGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVC  133 (137)
Q Consensus        62 ~~~~~L-SgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~  133 (137)
                      +++..| |||||||++||+||+.+|  ++|||||||+|||+..+..+++.+.    +.+|++   .|||++.+.. |+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~---itH~~~~~~~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV---VTHLAQIAARAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEE---ECCCHHHHHHSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHhCCEEE
Confidence            456778 999999999999999999  9999999999999999998888654    679999   4555555444 9999


Q ss_pred             Eec
Q psy317          134 LIS  136 (137)
Q Consensus       134 ~~~  136 (137)
                      ++.
T Consensus       469 ~~~  471 (517)
T 4ad8_A          469 KVE  471 (517)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            884

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.65  E-value=1.4e-16  Score=128.18  Aligned_cols=75  Identities=25%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             cCccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh
Q psy317           60 KTTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        60 ~~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~  128 (137)
                      .++++..|||||||      |+++|++|+.+|++|||||||+|||+..+..+++.+.     +.+|+++||.. ++. ..
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~-~~  319 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK-DA  319 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG-GG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHH-Hh
Confidence            46788999999999      6778888899999999999999999999998887543     55899977663 232 22


Q ss_pred             cCceEEec
Q psy317          129 RNEVCLIS  136 (137)
Q Consensus       129 ~~~~~~~~  136 (137)
                      .|+++.++
T Consensus       320 ~d~~~~l~  327 (339)
T 3qkt_A          320 ADHVIRIS  327 (339)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            38888774

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.65  E-value=4.4e-16  Score=115.76  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317           60 KTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE  131 (137)
Q Consensus        60 ~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~  131 (137)
                      ..+++..||||||||++||++|+.    +|+++||||||+|||+.++..+++.+.    +.++++.||....+  ...|+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~--~~ad~  135 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM--ANADK  135 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH--TTCSE
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH--HhCCE
Confidence            345678999999999999999974    469999999999999999998888654    45777866654332  23488


Q ss_pred             eEEec
Q psy317          132 VCLIS  136 (137)
Q Consensus       132 ~~~~~  136 (137)
                      ++.++
T Consensus       136 i~~v~  140 (173)
T 3kta_B          136 IIGVS  140 (173)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.63  E-value=6.8e-16  Score=123.34  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317           59 HKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT  121 (137)
Q Consensus        59 ~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~  121 (137)
                      ..+.++..||+|||||++||+||+    .+|++|||||||++||+..+..+++.+.    +.+|+++||..
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~  282 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK  282 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            356778999999999999999997    6899999999999999999998887544    56899977663

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.56  E-value=1.7e-14  Score=117.35  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             HHHHHHHHHcCCCcc------------cC----ccCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHh
Q psy317           45 CFISEILDTLGLQEH------------KT----TMTSNLSGGQKKRL------SIALELVNN-PPIMFFDEPTSPLHKAE  101 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~------------~~----~~~~~LSgGqkqrv------~IArAL~~~-P~iLlLDEPtsgLD~~~  101 (137)
                      +.+.++++.+++...            .+    .++..|||||+||+      ++|++++.+ |++|||||||+|||+..
T Consensus       243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~  322 (371)
T 3auy_A          243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR  322 (371)
T ss_dssp             HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred             HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence            445667777766441            11    56689999999988      567899999 99999999999999999


Q ss_pred             HHHHHHhhcc----ceeeeeccccchhhhhhcCceEEec
Q psy317          102 FTPKYERKVD----TKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus       102 ~~~i~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      +..+++.+..    .+|+++||..+ + ....|+++++.
T Consensus       323 ~~~l~~~l~~~~~~~~vi~~th~~~-~-~~~~d~~~~l~  359 (371)
T 3auy_A          323 RAKLAEIFRKVKSIPQMIIITHHRE-L-EDVADVIINVK  359 (371)
T ss_dssp             HHHHHHHHHHCCSCSEEEEEESCGG-G-GGGCSEEEEEE
T ss_pred             HHHHHHHHHHhccCCeEEEEEChHH-H-HhhCCEEEEEE
Confidence            9999887653    48999666643 3 23338888875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.53  E-value=3e-15  Score=109.48  Aligned_cols=73  Identities=12%  Similarity=0.092  Sum_probs=56.0

Q ss_pred             HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------hHHHHHHhh-----cc
Q psy317           53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA----------------EFTPKYERK-----VD  111 (137)
Q Consensus        53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~----------------~~~~i~~~~-----~~  111 (137)
                      ..|.....+. ....|+|||||++||+|++.+|++|+|||||++||+.                .+..+++.+     .|
T Consensus        71 ~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g  149 (171)
T 4gp7_A           71 QLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG  149 (171)
T ss_dssp             HTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred             hCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence            3455444443 3456999999999999999999999999999999999                446666642     37


Q ss_pred             ceeeeeccccchhhhhhc
Q psy317          112 TKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus       112 ~~v~~~~~~~~~~~~~~~  129 (137)
                      .|+++   .+||+.++..
T Consensus       150 ~tvi~---vtH~~~~~~~  164 (171)
T 4gp7_A          150 FRYVY---ILNSPEEVEE  164 (171)
T ss_dssp             CSEEE---EECSHHHHHH
T ss_pred             CcEEE---EeCCHHHhhh
Confidence            79999   6666666643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.53  E-value=7.2e-15  Score=120.21  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=58.7

Q ss_pred             CccCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhh
Q psy317           61 TTMTS-NLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        61 ~~~~~-~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~  128 (137)
                      ++++. .||||||||++||++|+         .+|+||||||||++||+..+..+++.+..  .+++++||. ++    .
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~----~  333 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP----G  333 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT----T
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc----c
Confidence            45666 79999999999999999         89999999999999999999999998764  467776673 22    4


Q ss_pred             cCceEEec
Q psy317          129 RNEVCLIS  136 (137)
Q Consensus       129 ~~~~~~~~  136 (137)
                      .++++++.
T Consensus       334 ~~~i~~l~  341 (359)
T 2o5v_A          334 AALTLRAQ  341 (359)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            57777664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.49  E-value=4.8e-14  Score=116.43  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCce
Q psy317           62 TMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEV  132 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~  132 (137)
                      +++..|||||||+++||++|+    .+|+++||||||++||+..+..+++.+.     +.+++++||..+.+.  ..|++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~--~~d~~  406 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE--KSDAL  406 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT--TCSEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH--hCCEE
Confidence            456679999999999999999    5899999999999999999999988664     458999777643322  24888


Q ss_pred             EEec
Q psy317          133 CLIS  136 (137)
Q Consensus       133 ~~~~  136 (137)
                      +.+.
T Consensus       407 ~~~~  410 (430)
T 1w1w_A          407 VGVY  410 (430)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.5e-15  Score=126.38  Aligned_cols=111  Identities=11%  Similarity=0.071  Sum_probs=79.0

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHH--HhcCCCE----E
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALE--LVNNPPI----M   88 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArA--L~~~P~i----L   88 (137)
                      +..+|+.+|+ ++.....  .   ..  ..+++.++++.+|+.+..+  +.+||||||||++||||  |+.+|++    |
T Consensus       194 ~~~~tv~eni-~~~~~~~--~---~~--~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          194 SDILDAQLPT-WGQSLTS--G---AT--LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             CSCCCTTCTT-CSCBCBS--S---CC--SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             ccccchhhhh-ccccccc--C---cc--hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            4456888888 5432110  0   01  1123456788899988766  89999999999999999  9999999    9


Q ss_pred             EEeC-CCCCCCHHhHHHHHHhhc--cceeeeeccccch-hh--hhhc--Cc-----eEEec
Q psy317           89 FFDE-PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQN-LQ--QTIR--NE-----VCLIS  136 (137)
Q Consensus        89 lLDE-PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~-~~--~~~~--~~-----~~~~~  136 (137)
                      |||| ||++||+. ...+.+.+.  +.++++.+|...| +.  ++..  |+     |++|.
T Consensus       264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~  323 (460)
T 2npi_A          264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP  323 (460)
T ss_dssp             EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence            9999 99999999 656655443  6788886655331 22  4443  87     88875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=2.2e-13  Score=103.51  Aligned_cols=59  Identities=12%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317           45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR  120 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~  120 (137)
                      +++.++++. |+             |||||++|||||+.+|++|||||||+|    ++..+++.+.    |.+|+ +||.
T Consensus        97 ~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd  157 (208)
T 3b85_A           97 EVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGD  157 (208)
T ss_dssp             THHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC
T ss_pred             HHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECC
Confidence            356666765 54             999999999999999999999999999    5555555443    55776 6554


Q ss_pred             cc
Q psy317          121 TQ  122 (137)
Q Consensus       121 ~~  122 (137)
                      ..
T Consensus       158 ~~  159 (208)
T 3b85_A          158 IT  159 (208)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.21  E-value=6.6e-12  Score=106.26  Aligned_cols=83  Identities=12%  Similarity=0.013  Sum_probs=65.2

Q ss_pred             HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----hHHHHHHhh-----ccceeeeeccccc
Q psy317           53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA-----EFTPKYERK-----VDTKVDYTGNRTQ  122 (137)
Q Consensus        53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~-----~~~~i~~~~-----~~~~v~~~~~~~~  122 (137)
                      .+|+....+.++..|||||+||+.+|+++..+|++||+| ||+|||..     .+..+++.+     .|.+|++++|...
T Consensus       340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~  418 (525)
T 1tf7_A          340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ  418 (525)
T ss_dssp             HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred             hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccc
Confidence            456666678889999999999999999999999999999 99999999     777766632     3789999777651


Q ss_pred             ---------hhhhhhcCceEEec
Q psy317          123 ---------NLQQTIRNEVCLIS  136 (137)
Q Consensus       123 ---------~~~~~~~~~~~~~~  136 (137)
                               +.-....|+|++|.
T Consensus       419 ~~~~~~~~~~~l~~~~D~vi~L~  441 (525)
T 1tf7_A          419 FMGAHSITDSHISTITDTIILLQ  441 (525)
T ss_dssp             SSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             ccCcccccCcccceeeeEEEEEE
Confidence                     11123348888764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.18  E-value=9.6e-13  Score=109.45  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=60.5

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc---
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGG--QKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV---  110 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgG--qkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~---  110 (137)
                      ++.++++.+++.+.. ..+. +|+|  |+||+.||+||++          +|++++|||||+|||+..+.++++.+.   
T Consensus       136 ~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~  213 (413)
T 1tq4_A          136 PPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  213 (413)
T ss_dssp             CHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence            456789999987653 3334 9999  9999999999999          999999999999999999987765322   


Q ss_pred             -------c----ceeeeeccccch
Q psy317          111 -------D----TKVDYTGNRTQN  123 (137)
Q Consensus       111 -------~----~~v~~~~~~~~~  123 (137)
                             |    .+|+++||...+
T Consensus       214 ~~~l~~~g~~~~~iiliSsh~l~~  237 (413)
T 1tq4_A          214 VNTFRENGIAEPPIFLLSNKNVCH  237 (413)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTS
T ss_pred             HHHHHhcCCCCCcEEEEecCcCCc
Confidence                   1    246688876654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.94  E-value=5.6e-12  Score=101.03  Aligned_cols=79  Identities=10%  Similarity=0.073  Sum_probs=59.8

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++. |+.+|+.+.....    .+...  ..+.+.+.++.++ ....+.++..|||||+||+++|+|++.+|+||||||
T Consensus       131 ~~~~~-t~~e~~~~~~~~g----~~~~~--d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDe  202 (312)
T 3aez_A          131 FLYPN-AELQRRNLMHRKG----FPESY--NRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEG  202 (312)
T ss_dssp             GBCCH-HHHHHTTCTTCTT----SGGGB--CHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred             cCCcc-cHHHHHHHHHhcC----CChHH--HHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECC
Confidence            34555 8999986532111    11122  3456778888888 555667889999999999999999999999999999


Q ss_pred             CCCCCCH
Q psy317           93 PTSPLHK   99 (137)
Q Consensus        93 PtsgLD~   99 (137)
                      |+..+|+
T Consensus       203 p~~~~d~  209 (312)
T 3aez_A          203 LNVLQTG  209 (312)
T ss_dssp             TTTTCCC
T ss_pred             ccccCCc
Confidence            9999975

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.94  E-value=9.3e-10  Score=99.21  Aligned_cols=71  Identities=11%  Similarity=0.073  Sum_probs=51.1

Q ss_pred             HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH----Hhh---ccceeeeeccc
Q psy317           49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY----ERK---VDTKVDYTGNR  120 (137)
Q Consensus        49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~----~~~---~~~~v~~~~~~  120 (137)
                      +++..+|+.+...+..+++|+|++|++.|+++ +++|+++||||||+|+|+.....+.    +.+   .|.+++++||.
T Consensus       718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~  795 (918)
T 3thx_B          718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY  795 (918)
T ss_dssp             EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            35566677777777889999999999999999 8999999999999999998877665    332   37899997776

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.89  E-value=1.2e-10  Score=92.90  Aligned_cols=68  Identities=12%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317           50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRT  121 (137)
Q Consensus        50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~  121 (137)
                      +++.+|+.+..++++.+||   |||+.||||++.+|+  +|+|| ||+|||+..+..-+....+.++++.||.+
T Consensus       188 lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD  257 (302)
T 3b9q_A          188 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD  257 (302)
T ss_dssp             EECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCS
T ss_pred             HHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCC
Confidence            4667788777778889999   999999999999999  99999 99999999876555555688999977643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.87  E-value=3.7e-09  Score=82.07  Aligned_cols=76  Identities=9%  Similarity=0.033  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHhH---HHHHHhh------cccee
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS--PLHKAEF---TPKYERK------VDTKV  114 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts--gLD~~~~---~~i~~~~------~~~~v  114 (137)
                      ...++++.+++.+..++++..||+|++|++   ++++.+|++||+||||+  ++|....   .++++.+      .|.+|
T Consensus        98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv  174 (279)
T 1nlf_A           98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI  174 (279)
T ss_dssp             HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence            455678888888888889999999998764   68889999999999999  9998543   4444432      27799


Q ss_pred             eeeccccchh
Q psy317          115 DYTGNRTQNL  124 (137)
Q Consensus       115 ~~~~~~~~~~  124 (137)
                      ++++|.....
T Consensus       175 i~i~H~~~~~  184 (279)
T 1nlf_A          175 VFLHHASKGA  184 (279)
T ss_dssp             EEEEEC----
T ss_pred             EEEecCCCcc
Confidence            9988776554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.84  E-value=4.1e-09  Score=95.21  Aligned_cols=65  Identities=12%  Similarity=0.023  Sum_probs=47.3

Q ss_pred             CccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHhHHHH----HHhh---ccceeeeeccccchhhh
Q psy317           61 TTMTSNLSGGQKKRLSIALEL--VNNPPIMFFDEPTSPLHKAEFTPK----YERK---VDTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEPtsgLD~~~~~~i----~~~~---~~~~v~~~~~~~~~~~~  126 (137)
                      +.....+|+|++++..+|+++  +++|+++||||||+|+|+.....+    ++.+   .|.+++++||. |++..
T Consensus       716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~-~el~~  789 (934)
T 3thx_A          716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF-HELTA  789 (934)
T ss_dssp             -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC-GGGGG
T ss_pred             hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc-HHHHH
Confidence            344567888888888888888  999999999999999999877665    3333   27899998887 55553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.82  E-value=1.2e-11  Score=97.20  Aligned_cols=94  Identities=9%  Similarity=0.034  Sum_probs=61.3

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .+++.+||.+|+.++.....      ..  ..+.+.+.+.    ....+.++.+||||||||+++|||++.   ++++||
T Consensus        57 ~~~~~ltv~d~~~~g~~~~~------~~--~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---llllde  121 (270)
T 3sop_A           57 GVKMKLTVIDTPGFGDQINN------EN--CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISP  121 (270)
T ss_dssp             --CCEEEEECCCC--CCSBC------TT--CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECC
T ss_pred             CCcCCceEEechhhhhhccc------HH--HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEec
Confidence            45667788888876542211      01  1122333333    345667788999999999999999886   999999


Q ss_pred             CCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317           93 PTSPLHKAEFTPKYERKVDTKVDYTGNRT  121 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~~~~v~~~~~~~  121 (137)
                      |++|||+...+.+.......+|++..+..
T Consensus       122 p~~gL~~lD~~~l~~L~~~~~vI~Vi~K~  150 (270)
T 3sop_A          122 TGHSLRPLDLEFMKHLSKVVNIIPVIAKA  150 (270)
T ss_dssp             CSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred             CCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence            99999999865444433346777655443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.76  E-value=2.5e-09  Score=87.40  Aligned_cols=67  Identities=12%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317           50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR  120 (137)
Q Consensus        50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~  120 (137)
                      +++.+|+.+..++++.+||   |||+.||||++.+|+  +|+|| ||+|+|+..+..-+....+.++++.||.
T Consensus       245 lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          245 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKL  313 (359)
T ss_dssp             EEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESC
T ss_pred             HHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecC
Confidence            4567788777778888999   999999999999999  99999 9999999987665555568899997764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.72  E-value=4e-11  Score=89.48  Aligned_cols=79  Identities=10%  Similarity=-0.002  Sum_probs=60.8

Q ss_pred             HHHHHHH------HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----CHHhHHHHHHhh----
Q psy317           44 SCFISEI------LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL----HKAEFTPKYERK----  109 (137)
Q Consensus        44 ~~~~~~~------L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgL----D~~~~~~i~~~~----  109 (137)
                      .+++.+.      ++.+|+....++++..||           +|+.+|++++|||||+|+    |+..+..+++.+    
T Consensus       106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~  174 (207)
T 1znw_A          106 RAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA  174 (207)
T ss_dssp             HHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence            3455555      666777777788889998           999999999999999998    676777665532    


Q ss_pred             --ccceeeeeccccchhhhhhc--CceEEec
Q psy317          110 --VDTKVDYTGNRTQNLQQTIR--NEVCLIS  136 (137)
Q Consensus       110 --~~~~v~~~~~~~~~~~~~~~--~~~~~~~  136 (137)
                        .+.+|++   .|||+.+|..  |+++++.
T Consensus       175 ~~~g~tvi~---vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          175 AQGDFDKVV---VNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             GGGGSSEEE---ECSSHHHHHHHHHHHHC--
T ss_pred             hhccCcEEE---ECCCHHHHHHHHHHHHHhc
Confidence              2679999   7789999987  8887763

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.71  E-value=4.3e-08  Score=76.40  Aligned_cols=59  Identities=3%  Similarity=-0.045  Sum_probs=41.4

Q ss_pred             ccCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HhHHHHHHhh------ccceeeeecccc
Q psy317           62 TMTSNLSGGQ-KKRLSIALELVNNPPIMFFDEPTS---P---LHK-AEFTPKYERK------VDTKVDYTGNRT  121 (137)
Q Consensus        62 ~~~~~LSgGq-kqrv~IArAL~~~P~iLlLDEPts---g---LD~-~~~~~i~~~~------~~~~v~~~~~~~  121 (137)
                      ..+..+|.++ +|++. |+++..+|++||+||||+   +   +|. .....+++.+      .+.+|+++||..
T Consensus       125 ~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          125 DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            3457789998 66666 999999999999999999   5   455 4445555533      277999977774

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.68  E-value=1.7e-08  Score=91.91  Aligned_cols=78  Identities=10%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH----HHHHhhc---cceeeeeccccchhh
Q psy317           53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT----PKYERKV---DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~----~i~~~~~---~~~v~~~~~~~~~~~  125 (137)
                      .+|+.+...+..+++|+++++ +++|++++++|+++|||||++|+|+....    .+++.+.   |.+++++|   |++.
T Consensus       838 rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~T---H~~e  913 (1022)
T 2o8b_B          838 RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFST---HYHS  913 (1022)
T ss_dssp             ECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEEC---CCHH
T ss_pred             HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEe---CCHH
Confidence            345544444556778888776 99999999999999999999999988743    3344432   67999955   5554


Q ss_pred             hhhc--CceEE
Q psy317          126 QTIR--NEVCL  134 (137)
Q Consensus       126 ~~~~--~~~~~  134 (137)
                      .+..  +++++
T Consensus       914 l~~~~~d~~~v  924 (1022)
T 2o8b_B          914 LVEDYSQNVAV  924 (1022)
T ss_dssp             HHHHTSSCSSE
T ss_pred             HHHHhCCccee
Confidence            4433  44433

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.53  E-value=1.6e-09  Score=86.79  Aligned_cols=67  Identities=16%  Similarity=0.099  Sum_probs=48.4

Q ss_pred             HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccccchhhh
Q psy317           47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~~~~~~  126 (137)
                      +.+.++.+ +.+..+  +..||||||||   ||||+.+|+|||    |++||+.+...+..            .+|++..
T Consensus       184 ~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------------ltH~~~~  241 (305)
T 2v9p_A          184 CWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------------LHSRVQT  241 (305)
T ss_dssp             HHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG------------GTTTEEE
T ss_pred             HHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH------------HhCCHHH
Confidence            33455553 444344  78999999999   999999999999    99999999876642            1555544


Q ss_pred             hhc-CceEEec
Q psy317          127 TIR-NEVCLIS  136 (137)
Q Consensus       127 ~~~-~~~~~~~  136 (137)
                      ... |++ ++.
T Consensus       242 ~~~aD~i-vl~  251 (305)
T 2v9p_A          242 FRFEQPC-TDE  251 (305)
T ss_dssp             EECCCCC-CCC
T ss_pred             HHhCCEE-EEe
Confidence            333 777 664

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.52  E-value=6.8e-08  Score=85.66  Aligned_cols=59  Identities=19%  Similarity=0.128  Sum_probs=47.8

Q ss_pred             cCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHhH-HHHHHhh--ccceeeeecccc
Q psy317           63 MTSNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAEF-TPKYERK--VDTKVDYTGNRT  121 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~~-~~i~~~~--~~~~v~~~~~~~  121 (137)
                      ....+|+|+++++.+++++  +++|+++|||||   |++||..+. ..+++.+  .|.+++++||..
T Consensus       632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~  698 (765)
T 1ewq_A          632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  698 (765)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3456899999999999999  999999999999   999998875 3566654  478999977663

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.50  E-value=8.1e-08  Score=77.16  Aligned_cols=50  Identities=14%  Similarity=-0.004  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cc-eeeeeccccc
Q psy317           69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DT-KVDYTGNRTQ  122 (137)
Q Consensus        69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~-~v~~~~~~~~  122 (137)
                      |||+||++||+||..+|++||+||||+.   . ...+++.+. |. ++++++|...
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~---e-~~~~l~~~~~g~~tvi~t~H~~~  276 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS---E-AYDFYNVLCSGHKGTLTTLHAGS  276 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST---H-HHHHHHHHHTTCCCEEEEEECSS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH---H-HHHHHHHHhcCCCEEEEEEcccH
Confidence            8999999999999999999999999982   2 233444443 43 7899777665

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.48  E-value=3.2e-07  Score=67.62  Aligned_cols=70  Identities=9%  Similarity=-0.022  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHhHHHHHHhhc------cceeeeecccc--------chhhhh
Q psy317           66 NLSGGQKKRLSIALELVNNPP--IMFFDEPTSPL--HKAEFTPKYERKV------DTKVDYTGNRT--------QNLQQT  127 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgL--D~~~~~~i~~~~~------~~~v~~~~~~~--------~~~~~~  127 (137)
                      ..|.++.++...+.+...+|+  +|++||||+++  |+..+..+++.+.      +.+|++++|..        ..+.+ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~-  181 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEH-  181 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHH-
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhe-
Confidence            458999988888888888999  99999999888  9987777766432      67999977665        11222 


Q ss_pred             hcCceEEec
Q psy317          128 IRNEVCLIS  136 (137)
Q Consensus       128 ~~~~~~~~~  136 (137)
                      ..|+|++|.
T Consensus       182 ~~d~vi~l~  190 (235)
T 2w0m_A          182 VADGIIRFR  190 (235)
T ss_dssp             HCSEEEEEE
T ss_pred             eeeEEEEEE
Confidence            228888764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.46  E-value=1.4e-07  Score=69.03  Aligned_cols=67  Identities=18%  Similarity=0.019  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCCcc-cCccCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317           45 CFISEILDTLGLQEH-KTTMTSNLSGGQKKR-LSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVD  111 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqr-v~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~  111 (137)
                      ..+.+++...++... ...+...+|+||+|+ +..+++++.+|+++++|||||++|......+++.+..
T Consensus       127 ~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            345567777787654 366788899999999 8999999999999999999999999999999887653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.42  E-value=1.9e-08  Score=76.74  Aligned_cols=98  Identities=11%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++.+|+.+++.+......... +...  ..+.+.+.|+.+  ....+.++..||+||+||+.+ ++++.+|+++|+|
T Consensus        67 d~~~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD  140 (245)
T 2jeo_A           67 DRFYKVLTAEQKAKALKGQYNFDH-PDAF--DNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE  140 (245)
T ss_dssp             GGGBCCCCHHHHHHHHTTCCCTTS-GGGB--CHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE
T ss_pred             CcCccccCHhHhhhhhccCCCCCC-cccc--cHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEe
Confidence            346677899998875432111000 0011  223445555543  345677889999999999988 6889999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317           92 EPTSPLHKAEFTPKYERKVDTKVDYTGNR  120 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~~~~v~~~~~~  120 (137)
                      ||....+..    + ....+.+|++++|.
T Consensus       141 g~~~~~~~~----l-~~~~~~~i~v~th~  164 (245)
T 2jeo_A          141 GILVFYSQE----I-RDMFHLRLFVDTDS  164 (245)
T ss_dssp             CTTTTTSHH----H-HTTCSEEEEEECCH
T ss_pred             CccccccHH----H-HHhcCeEEEEECCH
Confidence            998887764    2 23358899996654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.38  E-value=1.2e-09  Score=82.45  Aligned_cols=77  Identities=9%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----------
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSI-----ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----------  110 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~I-----ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----------  110 (137)
                      .++++++...+. ..+   .++||||+||++|     +++++..|++++|||||+++|..+...+.+++.          
T Consensus       106 ~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h  181 (218)
T 1z6g_A          106 EYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEAN  181 (218)
T ss_dssp             HHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Confidence            456666654432 122   6789999999999     899999999999999999999987777766542          


Q ss_pred             --cceeeeeccccchhhhhhc
Q psy317          111 --DTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus       111 --~~~v~~~~~~~~~~~~~~~  129 (137)
                        ....++   .+||+++|..
T Consensus       182 ~~~~d~ii---v~~~~~ea~~  199 (218)
T 1z6g_A          182 LLNFNLSI---INDDLTLTYQ  199 (218)
T ss_dssp             TSCCSEEE---ECSSHHHHHH
T ss_pred             ccCCCEEE---ECCCHHHHHH
Confidence              234445   4567777665

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.32  E-value=9.9e-07  Score=64.82  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=49.9

Q ss_pred             HHHHHHHHcCCCc--cc-CccCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHhH--------HHHHH----
Q psy317           46 FISEILDTLGLQE--HK-TTMTSNLSGGQ--KKRLSIALELVNN-PPIMFFDEPTSPLHKAEF--------TPKYE----  107 (137)
Q Consensus        46 ~~~~~L~~lgL~~--~~-~~~~~~LSgGq--kqrv~IArAL~~~-P~iLlLDEPtsgLD~~~~--------~~i~~----  107 (137)
                      ++.+.++.+++..  .. +-.+...|+++  ++++..+++++.+ |+++|+||||+++|+...        ..+++    
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~  140 (220)
T 2cvh_A           61 RLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLW  140 (220)
T ss_dssp             HHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHH
Confidence            3444555555521  11 11344556664  5678888899986 999999999999997431        22322    


Q ss_pred             hh--ccceeeeeccccchh
Q psy317          108 RK--VDTKVDYTGNRTQNL  124 (137)
Q Consensus       108 ~~--~~~~v~~~~~~~~~~  124 (137)
                      ..  .+.+|++++|...+.
T Consensus       141 l~~~~~~~vi~~~h~~~~~  159 (220)
T 2cvh_A          141 IARKHNIPVIVINQVHFDS  159 (220)
T ss_dssp             HHHHHTCCEEEEECSSSSC
T ss_pred             HHHHcCCEEEEEeeEEEcC
Confidence            22  277999988876643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.23  E-value=7.2e-08  Score=81.48  Aligned_cols=64  Identities=11%  Similarity=0.084  Sum_probs=45.9

Q ss_pred             HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHhHHHHHHhhc-----cceeeeeccccchh--------hhhhcCceE
Q psy317           73 KRLSIALELV-NNPPIMFFDEPTS-----PLHKAEFTPKYERKV-----DTKVDYTGNRTQNL--------QQTIRNEVC  133 (137)
Q Consensus        73 qrv~IArAL~-~~P~iLlLDEPts-----gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~--------~~~~~~~~~  133 (137)
                      +.-.+..+|. .+|+++++||||+     ++|+..+..+++.+.     |.||+++||....+        .....|+|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            3445566664 6899999999998     468888887777433     78999966665553        223359999


Q ss_pred             Eec
Q psy317          134 LIS  136 (137)
Q Consensus       134 ~~~  136 (137)
                      +|.
T Consensus       206 ~L~  208 (525)
T 1tf7_A          206 ILR  208 (525)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.21  E-value=5.9e-07  Score=69.91  Aligned_cols=47  Identities=13%  Similarity=0.056  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccc
Q psy317           73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQ  122 (137)
Q Consensus        73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~  122 (137)
                      -+++||+||+.+|++|++||||   |+.+...+++... |.+|++++|...
T Consensus        87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~  134 (261)
T 2eyu_A           87 FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT  134 (261)
T ss_dssp             HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcch
Confidence            3899999999999999999999   9988877666443 779999777644

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.15  E-value=7.5e-08  Score=71.76  Aligned_cols=56  Identities=7%  Similarity=-0.005  Sum_probs=44.1

Q ss_pred             CccCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHhHHHHHHhhccc-eeee
Q psy317           61 TTMTSNLSGGQKKRL-SIAL---ELVNNPPIMFFDE--PTSPLHKAEFTPKYERKVDT-KVDY  116 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv-~IAr---AL~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~~~-~v~~  116 (137)
                      .++...+|+|||+++ ++++   |++.+|++||+||  ||..+|......+.+.+... ++++
T Consensus        78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~il  140 (189)
T 2i3b_A           78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIIL  140 (189)
T ss_dssp             SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEE
T ss_pred             ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEE
Confidence            445567999999888 4444   6899999999999  89999998888877776644 6665

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.07  E-value=3.8e-06  Score=74.81  Aligned_cols=66  Identities=9%  Similarity=0.017  Sum_probs=39.7

Q ss_pred             CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHH----HHhh---ccceeeeecccc
Q psy317           55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPK----YERK---VDTKVDYTGNRT  121 (137)
Q Consensus        55 gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i----~~~~---~~~~v~~~~~~~  121 (137)
                      +..+......+.+|+++++. ..+...+++|+++|||||++|+|+.....+    ++.+   .|.+++++||..
T Consensus       658 ~~~d~l~~~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~  730 (800)
T 1wb9_A          658 GAADDLASGRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  730 (800)
T ss_dssp             C-----------CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             CHHHHHHhhhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence            33333334456678777654 444456899999999999999888765443    3333   367999977764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.03  E-value=3.3e-06  Score=68.17  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHh------------HHHHHHhh------ccceeeeeccccc
Q psy317           68 SGGQKKRLSIALELV-------NNPPIMFFDEPTSPLHKAE------------FTPKYERK------VDTKVDYTGNRTQ  122 (137)
Q Consensus        68 SgGqkqrv~IArAL~-------~~P~iLlLDEPtsgLD~~~------------~~~i~~~~------~~~~v~~~~~~~~  122 (137)
                      |.+++|++.++++++       .+|++||+||||+++|+..            ..+++..+      .+.+|++++|.+.
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            688999999999999       6899999999999999852            23443322      2779999888776


Q ss_pred             hhh
Q psy317          123 NLQ  125 (137)
Q Consensus       123 ~~~  125 (137)
                      +..
T Consensus       288 ~~~  290 (349)
T 1pzn_A          288 RPD  290 (349)
T ss_dssp             ---
T ss_pred             ccc
Confidence            554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.03  E-value=3.3e-09  Score=78.50  Aligned_cols=96  Identities=5%  Similarity=-0.063  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHH----HHHHHHHHHhcCCCEEEEe
Q psy317           16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQK----KRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqk----qrv~IArAL~~~P~iLlLD   91 (137)
                      ..+|+.++..+...  . ..   ..  ..+++.+.++.+++.+..+.++..+|+|++    ||+.++++++.+|.++++|
T Consensus        47 ~~~~~~~~~~~~~~--~-~~---~~--~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~d  118 (211)
T 3asz_A           47 GHLPLEERLRVNYD--H-PD---AF--DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYP  118 (211)
T ss_dssp             TTSCHHHHHHSCTT--S-GG---GB--CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSS
T ss_pred             ccccHHHhcCCCCC--C-hh---hh--hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccC
Confidence            45788887654321  1 11   11  235677788888888878888999999974    6889999999999999999


Q ss_pred             CCCCC-------CCHHhHHHHHHhh------ccceeeeecc
Q psy317           92 EPTSP-------LHKAEFTPKYERK------VDTKVDYTGN  119 (137)
Q Consensus        92 EPtsg-------LD~~~~~~i~~~~------~~~~v~~~~~  119 (137)
                      |||++       ||+.....+.+.+      .|.++...+|
T Consensus       119 e~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~  159 (211)
T 3asz_A          119 KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA  159 (211)
T ss_dssp             HHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999       9988777666643      2667776443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.02  E-value=7.1e-08  Score=76.39  Aligned_cols=57  Identities=9%  Similarity=0.019  Sum_probs=43.2

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHhHHHHHHhhc---cceeeeeccc
Q psy317           59 HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS-PLHKAEFTPKYERKV---DTKVDYTGNR  120 (137)
Q Consensus        59 ~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~~~---~~~v~~~~~~  120 (137)
                      ..++++.++|||+|||+.+|||++    ++++||||+ |||+... .++..+.   +..+.+++|.
T Consensus       106 ~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~D  166 (301)
T 2qnr_A          106 QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKAD  166 (301)
T ss_dssp             HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGG
T ss_pred             HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCC
Confidence            345788999999999999999886    999999998 5999986 4444443   3455574443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.83  E-value=2.3e-05  Score=63.68  Aligned_cols=46  Identities=15%  Similarity=0.082  Sum_probs=37.2

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchh
Q psy317           76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNL  124 (137)
Q Consensus        76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~  124 (137)
                      +||+||.++|++|++|||+   |......+++.. .|.+|++|+|.....
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence            8999999999999999999   777766655543 488999977776554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.80  E-value=1.4e-05  Score=58.94  Aligned_cols=91  Identities=14%  Similarity=0.108  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCCcc--cC--ccCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHHh------------
Q psy317           46 FISEILDTLGLQEH--KT--TMTSNLSGGQK-KRLSIALELVN-------NPPIMFFDEPTSPLHKAE------------  101 (137)
Q Consensus        46 ~~~~~L~~lgL~~~--~~--~~~~~LSgGqk-qrv~IArAL~~-------~P~iLlLDEPtsgLD~~~------------  101 (137)
                      ++..+.+.+++...  .+  ......+.+++ +.+..+.+++.       +|+++++||||+++|+..            
T Consensus        75 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~  154 (231)
T 4a74_A           75 RIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK  154 (231)
T ss_dssp             HHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHH
Confidence            45556666666421  11  11234455544 33666666665       999999999999999831            


Q ss_pred             HHHHHHhh------ccceeeeeccccch-hhhhhc--CceEEec
Q psy317          102 FTPKYERK------VDTKVDYTGNRTQN-LQQTIR--NEVCLIS  136 (137)
Q Consensus       102 ~~~i~~~~------~~~~v~~~~~~~~~-~~~~~~--~~~~~~~  136 (137)
                      ...+++.+      .|.+|++++|...+ -.....  |+++++.
T Consensus       155 ~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~  198 (231)
T 4a74_A          155 LAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR  198 (231)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence            11333322      27899997775554 111211  6666654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.75  E-value=5.3e-07  Score=71.31  Aligned_cols=57  Identities=11%  Similarity=0.067  Sum_probs=41.1

Q ss_pred             HHHHHHHHHcCCC------c--ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHh
Q psy317           45 CFISEILDTLGLQ------E--HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE  101 (137)
Q Consensus        45 ~~~~~~L~~lgL~------~--~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~  101 (137)
                      ....+.++.+.-.      .  ....+...+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus       105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence            4555666666432      1  2345568899999999998733333999999999999999853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.67  E-value=4.4e-06  Score=67.62  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=46.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-------cc-----eeeeeccccchhhhhhc
Q psy317           62 TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-------DT-----KVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~~-----~v~~~~~~~~~~~~~~~  129 (137)
                      +.+..||+|| |++++|   +.+|++      |+|+|+..+..+.+.+.       |.     ||++   .+||+.....
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~---~thdl~~~i~  233 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLL---ESDNVNDPIG  233 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEEC---CSSCCCCHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEE---eCCCCCChhh
Confidence            4678999999 899999   688887      99999999998777443       32     5556   6677775544


Q ss_pred             CceEEec
Q psy317          130 NEVCLIS  136 (137)
Q Consensus       130 ~~~~~~~  136 (137)
                      |+++++.
T Consensus       234 d~v~~i~  240 (347)
T 2obl_A          234 DEVRSIL  240 (347)
T ss_dssp             HHHHHHC
T ss_pred             hheEEee
Confidence            6655543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.64  E-value=7e-05  Score=58.90  Aligned_cols=52  Identities=12%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceE
Q psy317           81 LVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVC  133 (137)
Q Consensus        81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~  133 (137)
                      +..+|+++|+|||++ ||+..+..+++.+.    +.+++++||..+.+-.+++.|..
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  186 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL  186 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence            788999999999999 99999888888665    45788988988887777766543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.49  E-value=2.4e-05  Score=62.21  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=39.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317           67 LSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR  120 (137)
Q Consensus        67 LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~  120 (137)
                      ++..++||+.||||++.+|+  ++.|| |+++.+......-+....+.++++.||.
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~  257 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKL  257 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            45556899999999999999  77788 7777776655444444558899995554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.43  E-value=0.00026  Score=50.74  Aligned_cols=44  Identities=18%  Similarity=0.036  Sum_probs=34.9

Q ss_pred             HHhcCCCEEEEeCCCC-CCCHHhHHHHHHhh-----ccceeeeeccccch
Q psy317           80 ELVNNPPIMFFDEPTS-PLHKAEFTPKYERK-----VDTKVDYTGNRTQN  123 (137)
Q Consensus        80 AL~~~P~iLlLDEPts-gLD~~~~~~i~~~~-----~~~~v~~~~~~~~~  123 (137)
                      ..+.+|++|+||||++ ++|+..+..+++.+     .+.+++++||...+
T Consensus        96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred             HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence            3456999999999985 99999988776643     47799999977654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.41  E-value=1.5e-05  Score=66.08  Aligned_cols=55  Identities=5%  Similarity=0.026  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHhHHHHHHhhccceeeeeccc
Q psy317           66 NLSGGQKKRLSIALELVNNPP---IMFFDEPT-SPLHKAEFTPKYERKVDTKVDYTGNR  120 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~---iLlLDEPt-sgLD~~~~~~i~~~~~~~~v~~~~~~  120 (137)
                      .++.+++||+.||||++.+|+   +|++|||| +|||+.....+-....+.+|++.+|.
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK  176 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAK  176 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEc
Confidence            345567789999999999999   99999999 69999886444333336677766543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.39  E-value=5.8e-06  Score=62.68  Aligned_cols=46  Identities=22%  Similarity=0.199  Sum_probs=38.2

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHhHHHHHHhhc
Q psy317           58 EHKTTMTSNLSGGQKKRLSIALEL-VNNPPIMFFD----EPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        58 ~~~~~~~~~LSgGqkqrv~IArAL-~~~P~iLlLD----EPtsgLD~~~~~~i~~~~~  110 (137)
                      ...++++..|||    |+   +|+ +.+|++++||    |||+++|+.+...+.+.+.
T Consensus       144 r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~  194 (246)
T 2bbw_A          144 RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLR  194 (246)
T ss_dssp             HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHH
T ss_pred             HHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHH
Confidence            345778899999    55   788 9999999999    9999999998887776543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.39  E-value=3.6e-05  Score=64.12  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---------cc-----eeeeeccccchhhhhhc
Q psy317           64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---------DT-----KVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---------~~-----~v~~~~~~~~~~~~~~~  129 (137)
                      +..||+|| ||++||   +.+|++      |+|||+..+..+.+.+.         |.     ||++   .+||+.....
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv---~tHdl~~~ia  322 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT---EGDDQQDPIA  322 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEEC---SSSCSCCHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEE---eCCCccchhh
Confidence            67899999 999999   899988      99999999988777442         21     5666   6677753333


Q ss_pred             CceEEe
Q psy317          130 NEVCLI  135 (137)
Q Consensus       130 ~~~~~~  135 (137)
                      |++++|
T Consensus       323 d~v~~l  328 (438)
T 2dpy_A          323 DSARAI  328 (438)
T ss_dssp             HHHHHH
T ss_pred             ceEEEE
Confidence            444443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.0016  Score=48.03  Aligned_cols=81  Identities=10%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             HHHHHHHHcCCCcc--cC--ccCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------h-----HHHHH
Q psy317           46 FISEILDTLGLQEH--KT--TMTSNLSGGQKKR-LSIALELV--NNPPIMFFDEPTSPLHKA-------E-----FTPKY  106 (137)
Q Consensus        46 ~~~~~L~~lgL~~~--~~--~~~~~LSgGqkqr-v~IArAL~--~~P~iLlLDEPtsgLD~~-------~-----~~~i~  106 (137)
                      +..++++.+|+...  .+  ..+...+..+... +.-+..++  .+|+++++|||++.+|+.       .     ...++
T Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~  153 (243)
T 1n0w_A           74 RLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFL  153 (243)
T ss_dssp             HHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHH
Confidence            34455666665420  01  1123456555433 23233333  589999999999999974       2     22333


Q ss_pred             Hhh------ccceeeeeccccchhhh
Q psy317          107 ERK------VDTKVDYTGNRTQNLQQ  126 (137)
Q Consensus       107 ~~~------~~~~v~~~~~~~~~~~~  126 (137)
                      ..+      .+.+|++++|...+...
T Consensus       154 ~~l~~~~~~~~~tvi~~~h~~~~~~~  179 (243)
T 1n0w_A          154 RMLLRLADEFGVAVVITNQVVAQVDG  179 (243)
T ss_dssp             HHHHHHHHHHCCEEEEEC--------
T ss_pred             HHHHHHHHHcCCEEEEEeeeeecCCC
Confidence            322      27899998887766554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.04  E-value=0.00092  Score=54.22  Aligned_cols=45  Identities=13%  Similarity=0.083  Sum_probs=35.8

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeecccc
Q psy317           74 RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRT  121 (137)
Q Consensus        74 rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~  121 (137)
                      +..|+++|..+|++|++|||+   |+.....+++... |.+|+.|+|..
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t~H~~  244 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTN  244 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEECCCCC
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEEECcc
Confidence            568999999999999999999   7777666555443 67888866764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.00  E-value=4.7e-05  Score=60.38  Aligned_cols=70  Identities=10%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchhhhhhc
Q psy317           51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~~  129 (137)
                      +..+++.+..++.. ++|+||+||+..+++++.+|+++  |||      ......+..+ .+.+|+++||..-|+....+
T Consensus       127 l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          127 IALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARINARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             EEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred             EEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence            34445555444443 79999999999999999999988  999      3333333333 47799998887777766544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.99  E-value=0.00016  Score=59.86  Aligned_cols=72  Identities=13%  Similarity=0.021  Sum_probs=52.0

Q ss_pred             HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH---HHHHhhc--cceeeeec-cccch
Q psy317           50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT---PKYERKV--DTKVDYTG-NRTQN  123 (137)
Q Consensus        50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~---~i~~~~~--~~~v~~~~-~~~~~  123 (137)
                      ++..+++.   +.++.+||+|++|++.+|++|+..|.+|++    +.+|+....   .+.+.+.  +.+++++| ++.++
T Consensus       239 lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          239 LLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAG  311 (416)
T ss_dssp             EEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             hhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence            34444454   567788999999999999999999999999    999987652   2222222  45777655 77777


Q ss_pred             hhhhh
Q psy317          124 LQQTI  128 (137)
Q Consensus       124 ~~~~~  128 (137)
                      +.+..
T Consensus       312 i~eL~  316 (416)
T 1udx_A          312 LPALK  316 (416)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.75  E-value=0.0014  Score=46.31  Aligned_cols=40  Identities=8%  Similarity=-0.022  Sum_probs=29.2

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cce-eeeeccc
Q psy317           80 ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTK-VDYTGNR  120 (137)
Q Consensus        80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~-v~~~~~~  120 (137)
                      +++.+|++|++|||++ ++...++.+++.+.     |.+ ++++||.
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            4578999999999998 65555666666432     566 8888874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.29  E-value=0.0012  Score=52.90  Aligned_cols=58  Identities=3%  Similarity=-0.244  Sum_probs=38.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHhHHHHHHhh----c--cceeeeeccc
Q psy317           63 MTSNLSGGQKKRLSIALELV-NNPPIMFFDE---PT------SPLHKAEFTPKYERK----V--DTKVDYTGNR  120 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~-~~P~iLlLDE---Pt------sgLD~~~~~~i~~~~----~--~~~v~~~~~~  120 (137)
                      .+..+|+|++|+..+++++. .+|+++||||   |+      .++|+..+..+.+.+    .  +.+|++.+|-
T Consensus       255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~  328 (365)
T 1lw7_A          255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP  328 (365)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred             HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            34456677777887777764 6899999999   65      588988888877765    3  6788876654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.15  E-value=6.1e-05  Score=55.10  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=21.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEE
Q psy317           66 NLSGGQKKRLSIALELVNNPPIM   88 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~iL   88 (137)
                      .|||||+||++||||+..+|++.
T Consensus       103 glSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGC
T ss_pred             CcCCCCCcEEEEEecccCCCccC
Confidence            49999999999999999999873

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.92  E-value=0.0051  Score=52.90  Aligned_cols=31  Identities=10%  Similarity=-0.071  Sum_probs=24.3

Q ss_pred             HHhcCCCEEEEeCC------CCCCCHHhHHHHHHhhc
Q psy317           80 ELVNNPPIMFFDEP------TSPLHKAEFTPKYERKV  110 (137)
Q Consensus        80 AL~~~P~iLlLDEP------tsgLD~~~~~~i~~~~~  110 (137)
                      +....|+++|+|||      |+|||+..+.++.+.+.
T Consensus       142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~  178 (608)
T 3szr_A          142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK  178 (608)
T ss_dssp             EESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred             cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence            33457999999999      99999999887777543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.86  E-value=0.009  Score=47.31  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             HHHHHHHcCCCcccCccCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy317           47 ISEILDTLGLQEHKTTMTSNLSGGQKKRL---SIALELVNNPPIMFFDEPTS   95 (137)
Q Consensus        47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv---~IArAL~~~P~iLlLDEPts   95 (137)
                      ...+++.+|+.-     +...|+|+.+++   ++++++..+|+++|+|||..
T Consensus       151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            445677777753     345689999999   89999999999999999974

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.68  E-value=0.0021  Score=45.97  Aligned_cols=42  Identities=5%  Similarity=-0.179  Sum_probs=34.9

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      +.++..+|+|++|++.++|++.++|+++        +|+.....+++...
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~  145 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA  145 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence            4456789999999999999999999976        58888877777554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.63  E-value=0.027  Score=47.31  Aligned_cols=61  Identities=21%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHhHH---HHHHhh------ccceeeeeccccchhhhhhc
Q psy317           69 GGQKKRLSIALELVNNPPIMFFDEPT----------SPLHKAEFT---PKYERK------VDTKVDYTGNRTQNLQQTIR  129 (137)
Q Consensus        69 gGqkqrv~IArAL~~~P~iLlLDEPt----------sgLD~~~~~---~i~~~~------~~~~v~~~~~~~~~~~~~~~  129 (137)
                      +++++|-.+++|....|.+|++||+-          +|.|.....   +++..+      .+..|+.+||..+.+..+..
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all  172 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL  172 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence            67888899999999999999999993          355554333   333322      23466678899888887753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.47  E-value=0.0026  Score=50.88  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             CCCCHHHHHHHHHHHHH---hc--CCCEEEEeCCCC
Q psy317           65 SNLSGGQKKRLSIALEL---VN--NPPIMFFDEPTS   95 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL---~~--~P~iLlLDEPts   95 (137)
                      ..+|+|++||..|+++|   ..  +++++++|||+.
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~  330 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSY  330 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSSH
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCH
Confidence            35899999999999999   76  899999999973

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.35  E-value=0.028  Score=47.42  Aligned_cols=56  Identities=18%  Similarity=0.276  Sum_probs=41.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeec
Q psy317           62 TMTSNLSGGQKKRLSIALELV--N---------------NPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTG  118 (137)
Q Consensus        62 ~~~~~LSgGqkqrv~IArAL~--~---------------~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~  118 (137)
                      +..+.+||||+|..-+|++-+  +               .-.++++||. +-+|.......++..+  |.-+++++
T Consensus       375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiat  449 (483)
T 3euj_A          375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAA  449 (483)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence            346889999999765555432  2               2368999999 9999999998888766  55555544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.33  E-value=0.083  Score=43.44  Aligned_cols=74  Identities=8%  Similarity=-0.034  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH--------hHHHHHHhhc-----
Q psy317           46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV--NNPPIMFFDEPTSPLHKA--------EFTPKYERKV-----  110 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~--~~P~iLlLDEPtsgLD~~--------~~~~i~~~~~-----  110 (137)
                      ++.+.+..++.....-.....+|.++.+  ..++.++  .+|+++++|+++...+..        ....+.+.++     
T Consensus       275 ~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke  352 (454)
T 2r6a_A          275 KLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE  352 (454)
T ss_dssp             HHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3344444444333332235679999887  4566666  789999999999977432        2233333332     


Q ss_pred             -cceeeeecccc
Q psy317          111 -DTKVDYTGNRT  121 (137)
Q Consensus       111 -~~~v~~~~~~~  121 (137)
                       +.+|++++|.+
T Consensus       353 ~~i~vi~~sql~  364 (454)
T 2r6a_A          353 LEVPVIALSQLS  364 (454)
T ss_dssp             HTCCEEEEECCC
T ss_pred             hCCeEEEEecCC
Confidence             67999988844

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.26  E-value=0.047  Score=40.00  Aligned_cols=41  Identities=10%  Similarity=-0.018  Sum_probs=28.1

Q ss_pred             cCCCEEEEeCCCCCC--CHHhHHHHHHh------hccceeeeeccccch
Q psy317           83 NNPPIMFFDEPTSPL--HKAEFTPKYER------KVDTKVDYTGNRTQN  123 (137)
Q Consensus        83 ~~P~iLlLDEPtsgL--D~~~~~~i~~~------~~~~~v~~~~~~~~~  123 (137)
                      .+|+++++|+|++.+  |+.....++..      ..+.+|++++|.+.+
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            589999999999988  55433333332      236799998887765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.25  E-value=0.026  Score=46.33  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=42.0

Q ss_pred             HHHHHHHHHcCCCcc--c-CccCCCCCHHHHH--HHHHHHHH--hcCCCEEEEeCCCCCCCHHhH------------HHH
Q psy317           45 CFISEILDTLGLQEH--K-TTMTSNLSGGQKK--RLSIALEL--VNNPPIMFFDEPTSPLHKAEF------------TPK  105 (137)
Q Consensus        45 ~~~~~~L~~lgL~~~--~-~~~~~~LSgGqkq--rv~IArAL--~~~P~iLlLDEPtsgLD~~~~------------~~i  105 (137)
                      .++.++.+.+|+...  . +-.+.....++.+  .+.-+..+  ..+|+++++|||++.+++...            ..+
T Consensus       227 ~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i  306 (400)
T 3lda_A          227 VRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF  306 (400)
T ss_dssp             HHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence            455567777887421  1 1122222333333  33333333  257999999999999986422            233


Q ss_pred             HHhh------ccceeeeeccccc
Q psy317          106 YERK------VDTKVDYTGNRTQ  122 (137)
Q Consensus       106 ~~~~------~~~~v~~~~~~~~  122 (137)
                      +..+      .+.+|++++|...
T Consensus       307 l~~L~~lake~gitVIlv~Hv~~  329 (400)
T 3lda_A          307 MRALQRLADQFGVAVVVTNQVVA  329 (400)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEC--
T ss_pred             HHHHHHHHHHcCCEEEEEEeecc
Confidence            3322      2779999888743

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.74  E-value=0.0097  Score=52.58  Aligned_cols=65  Identities=12%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHhHHHHHHhhc----cc-eeeee-ccccchhhhh
Q psy317           63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS-PLHKAEFTPKYERKV----DT-KVDYT-GNRTQNLQQT  127 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~~~----~~-~v~~~-~~~~~~~~~~  127 (137)
                      .+.-+|.|+.+|..++.+++.++++||+|||.. +||......++..+.    +. .|+++ |+...++..-
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~  258 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY  258 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence            355688999999999999999999999999997 999776555555432    33 44453 4544444433

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.69  E-value=0.0062  Score=49.51  Aligned_cols=39  Identities=15%  Similarity=0.030  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317           43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV   82 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~   82 (137)
                      ..+.+.++++.+|+..+.+.++.++| |++||++||++++
T Consensus       291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            34567788999999999999999999 9999999998764

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.65  E-value=0.00073  Score=57.46  Aligned_cols=79  Identities=10%  Similarity=0.056  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHcCCCcccCc---cCCCCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHh--HHHHH
Q psy317           43 GSCFISEILDTLGLQEHKTT---MTSNLSGGQKKRL----------SIALELVNNPP-IMFFDEPTSPLHKAE--FTPKY  106 (137)
Q Consensus        43 ~~~~~~~~L~~lgL~~~~~~---~~~~LSgGqkqrv----------~IArAL~~~P~-iLlLDEPtsgLD~~~--~~~i~  106 (137)
                      .++|. +++..+|+.+..+.   ....+|+||+|+.          .+++++...|. ++++||+++.++...  ...++
T Consensus       243 merR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l  321 (512)
T 2ius_A          243 MERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELI  321 (512)
T ss_dssp             HHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHH
Confidence            44554 67888898765432   2346788887652          35666778898 899999999887432  22233


Q ss_pred             Hh------hccceeeeeccccc
Q psy317          107 ER------KVDTKVDYTGNRTQ  122 (137)
Q Consensus       107 ~~------~~~~~v~~~~~~~~  122 (137)
                      .+      ..|.+++++|++..
T Consensus       322 ~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          322 ARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHHHHCGGGTEEEEEEESCCC
T ss_pred             HHHHHHhhhCCcEEEEEecCCc
Confidence            22      22778899887765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.59  E-value=0.07  Score=41.64  Aligned_cols=57  Identities=7%  Similarity=0.023  Sum_probs=39.1

Q ss_pred             HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHhHHHHHH
Q psy317           49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP-TSPLHKAEFTPKYE  107 (137)
Q Consensus        49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP-tsgLD~~~~~~i~~  107 (137)
                      .+.+..|+.-.....  ..+-.+.+|..|+.+...+++++|+||| +.++|......+..
T Consensus       147 ~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~  204 (295)
T 1ls1_A          147 LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR  204 (295)
T ss_dssp             HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred             HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH
Confidence            345556664332111  1233455788899988899999999999 99999876665544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.57  E-value=0.0075  Score=50.18  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccc
Q psy317           66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNR  120 (137)
Q Consensus        66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~  120 (137)
                      .++-.+   +.|+++|..++++|++|||+..|.+.+...+++.+.      |..|++.|..
T Consensus       161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            456555   789999999999999999999999998887766443      5677765543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.64  E-value=0.042  Score=39.26  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      +...+|++++.+|+++++|  ||++|.....++++.+.
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence            3467899999999999999  99999999999988654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.87  E-value=0.13  Score=38.34  Aligned_cols=43  Identities=7%  Similarity=0.010  Sum_probs=33.2

Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccchhh
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~~~~  125 (137)
                      +..++..++++|||     ||+..+.++++.+. +.+|++++|....+.
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~  144 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELD  144 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHH
Confidence            44566678999999     99999999999775 568999555544443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.39  E-value=0.2  Score=39.67  Aligned_cols=57  Identities=19%  Similarity=0.100  Sum_probs=41.5

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHhHHHHHHhhc----cceeeeec
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFD-EPTSPLHKAEFTPKYERKV----DTKVDYTG  118 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD-EPtsgLD~~~~~~i~~~~~----~~~v~~~~  118 (137)
                      +..+..+|+|++|.+. +.+...++-++++| +|.+++|......+++.+.    +..+++..
T Consensus       226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~  287 (357)
T 2e87_A          226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI  287 (357)
T ss_dssp             SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3456678999998776 55556777889999 9999999988777766543    55555433

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.81  E-value=0.0022  Score=52.99  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.|..+|+....  .+..||||++||  ||++|+.+|++..-
T Consensus       278 ~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          278 TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            357778987653  778999999999  99999999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=91.51  E-value=0.0026  Score=45.60  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc-cchhhh
Q psy317           68 SGGQKKRLSIAL------ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR-TQNLQQ  126 (137)
Q Consensus        68 SgGqkqrv~IAr------AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~-~~~~~~  126 (137)
                      |+|++|++.++.      +++.+|+...+|+   ++|+..+.. ++.+.     +.+|+.+||. ..++.+
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~  162 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLND  162 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHH
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHH
Confidence            788888888888      8999999888884   899887766 55332     4578887776 445544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.34  E-value=0.47  Score=35.87  Aligned_cols=62  Identities=26%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------hHHHHHHhhcc---------ceeeeeccccchhhhhh
Q psy317           68 SGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA----------EFTPKYERKVD---------TKVDYTGNRTQNLQQTI  128 (137)
Q Consensus        68 SgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~----------~~~~i~~~~~~---------~~v~~~~~~~~~~~~~~  128 (137)
                      +++++.+..++.+...+|.+|++||+.+.++..          ....++..+.+         ..|+.+|+..+++..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            467788888888989999999999997765432          12233333221         23456778888887776


Q ss_pred             c
Q psy317          129 R  129 (137)
Q Consensus       129 ~  129 (137)
                      .
T Consensus       177 ~  177 (297)
T 3b9p_A          177 L  177 (297)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=91.27  E-value=0.36  Score=38.59  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhcC--CCEEEEeCCCCCC----------CH----HhH--HHHHHhh------ccceeeeeccccchh
Q psy317           72 KKRLSIALELVNN--PPIMFFDEPTSPL----------HK----AEF--TPKYERK------VDTKVDYTGNRTQNL  124 (137)
Q Consensus        72 kqrv~IArAL~~~--P~iLlLDEPtsgL----------D~----~~~--~~i~~~~------~~~~v~~~~~~~~~~  124 (137)
                      .+-+.++++++..  |+++|+|||++.+          |+    ..+  .+++..+      .+.+|++++|...++
T Consensus       125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~  201 (349)
T 2zr9_A          125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKI  201 (349)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Confidence            3456778888755  9999999999988          32    111  1222322      277999988876544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.57  E-value=0.041  Score=46.93  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      .+.+|+|++|++..++....++.+|++||.-. |++.....+++.+.
T Consensus       181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le  226 (604)
T 3k1j_A          181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ  226 (604)
T ss_dssp             ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred             cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence            46799999999999999999999999999888 89998888888665

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=90.28  E-value=0.088  Score=41.83  Aligned_cols=50  Identities=18%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             cccCc-cCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317           58 EHKTT-MTSNLSGGQKKRLSIALELVN------NPPIMFFDEPTSPLHKAEFTPKYERKVD  111 (137)
Q Consensus        58 ~~~~~-~~~~LSgGqkqrv~IArAL~~------~P~iLlLDEPtsgLD~~~~~~i~~~~~~  111 (137)
                      ++.|. ....+|+|++|++..+++++.      .|++++    +|++|......+++.+..
T Consensus       201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred             EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence            44553 335689999999999999987      688876    999999999988886653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=90.19  E-value=0.64  Score=37.21  Aligned_cols=34  Identities=15%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy317           65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH   98 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD   98 (137)
                      +.||.++.+|+..|...+.+++++|.|+|...++
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence            5899999999999999999999999999865443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=90.13  E-value=0.19  Score=35.76  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           75 LSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        75 v~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      ...|++++.+|+++++|  ||++|......+++.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence            45689999999999999  99999999998888654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=88.86  E-value=0.0015  Score=50.65  Aligned_cols=50  Identities=12%  Similarity=0.146  Sum_probs=41.2

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHhHHHHHHhhc
Q psy317           59 HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS------------PLHKAEFTPKYERKV  110 (137)
Q Consensus        59 ~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts------------gLD~~~~~~i~~~~~  110 (137)
                      ..++.+..|||||+||+.|++|+..+|++|  |||+.            --|...+..+++.+.
T Consensus       130 ~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          130 VVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             HHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            345667889999999999999999999985  99863            457888888888654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=87.28  E-value=0.35  Score=38.85  Aligned_cols=61  Identities=20%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             HHHHHHHHcCCCccc----CccCCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317           46 FISEILDTLGLQEHK----TTMTSNLSGGQKKRLSIA----LEL-VNNPPIMFFDEPTSPLHKAEFTPKYERKV  110 (137)
Q Consensus        46 ~~~~~L~~lgL~~~~----~~~~~~LSgGqkqrv~IA----rAL-~~~P~iLlLDEPtsgLD~~~~~~i~~~~~  110 (137)
                      .+.++++.+++.+..    ..++..+|+|+++++.++    +++ ..+|++    +|+|++|......+++.+.
T Consensus       280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~  349 (364)
T 2qtf_A          280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY  349 (364)
T ss_dssp             HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence            456778887765432    445667888888888877    555 444454    7999999999998888665

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=84.05  E-value=0.061  Score=42.02  Aligned_cols=36  Identities=6%  Similarity=0.024  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHH
Q psy317           44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIAL   79 (137)
Q Consensus        44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IAr   79 (137)
                      ..++.++++.++|.. ..++++..|||.++|+++|||
T Consensus       264 ~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          264 GCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             TCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457889999999986 778999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=83.41  E-value=1.2  Score=35.25  Aligned_cols=48  Identities=15%  Similarity=-0.052  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317           73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRT  121 (137)
Q Consensus        73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~  121 (137)
                      +.-.+++++..++.+++||.++ +.|.......+....+.++++.||.+
T Consensus       232 eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          232 EMKKIARVTKPNLVIFVGDALA-GNAIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence            3445899999999999999555 56666655555555688888866654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=83.13  E-value=2  Score=33.37  Aligned_cols=30  Identities=13%  Similarity=-0.030  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH
Q psy317           73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY  106 (137)
Q Consensus        73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~  106 (137)
                      -+.+|+  .+.+|+++|+|  |+|+|+.....+.
T Consensus       173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~  202 (296)
T 2px0_A          173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYID  202 (296)
T ss_dssp             HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHH
T ss_pred             HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHH
Confidence            344454  45999999999  9999988765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-12
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-12
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-12
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-11
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	9e-11
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-10
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	8e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-09
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-09
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	6e-09
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	7e-09
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	5e-08
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-07
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-07
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	4e-07
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-06
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-05
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-04
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-04
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-04

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           +    + L ++E      + LSGGQ++R+++A  +V  P ++  DEP S L    
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT 103
           + E+ + LGL E        LSGGQ++R+++   +V  P +   DEP S L      
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
           ++E+L  +GL +   +  SNLSGGQK+R++IA  L +NP ++  DE TS L 
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 49  EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
           E L    L+E       + LSGGQ++R++IA  L NNPPI+  D+PT  L 
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 55.4 bits (133), Expect = 9e-11
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
             +IL+ L L          LSGGQ K + I   L+ NP ++  DEP + +
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 22/44 (50%), Positives = 25/44 (56%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
           G           LSGGQK+RLSIA   +NNPPI+  DE TS L 
Sbjct: 143 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 52.5 bits (126), Expect = 8e-10
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           GL          LSGGQ++R++IA  L+ + PI+  DE TS L
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 183

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 47  ISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           +  I      L+E    +   LSGG+++ L+I   L++ P ++  DEP+  L
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106
           ++++ + L L          LSGGQ++R++I   LV  P +   DEP S L  A      
Sbjct: 111 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170

Query: 107 E 107
            
Sbjct: 171 I 171

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.4 bits (120), Expect = 6e-09
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           +    +  GL E      S  S G  ++L IA  L+ NP +   DEPTS
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 162

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 49  EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
           + L  +G+ E  +     +LSGGQ++R+SIA  L   P ++ FDEPTS L    
Sbjct: 131 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 184

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
             +SGGQ++RL+IA   + NP I+  DE T+ L 
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 55  GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
                       LSGGQ+ R+S+A  +  +  +   D P   L
Sbjct: 147 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 54  LGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
            G         + LSGGQ++R++IA  LVNNP I+ FDE TS L
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 31  MVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90
           +   A     +     I + L+++ + + K  +   LS G  +R+ +A  L+ N  I   
Sbjct: 91  LKAVASLYGVKVNKNEIMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVL 149

Query: 91  DEPTSPL 97
           D+P   +
Sbjct: 150 DDPVVAI 156

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 65  SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
           S LSGGQ++ +++A  L+  P ++  D+ TS L
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSAL 182

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 49  EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-------NPPIMFFDEPTSPLHKAE 101
           ++   L L +     T+ LSGG+ +R+ +A  ++           ++  DEP + L  A+
Sbjct: 108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 167

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.3 bits (91), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
           + E+   L +          LSG Q++R+++A  LV +P ++  DEP S
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 47  ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106
           + +    L ++         LSGG+++R+++A  LV NP I+  DEP S L         
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167

Query: 107 E 107
           E
Sbjct: 168 E 168

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 21  LTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALE 80
           L         +       +       + E+ + LG+        + LSGG+++R+++A  
Sbjct: 81  LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140

Query: 81  LVNNPPIMFFDEPTSPLH 98
           LV  P ++  DEP S + 
Sbjct: 141 LVIQPRLLLLDEPLSAVD 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.98
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.98
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.92
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.91
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.9
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.88
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.58
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.29
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.84
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.91
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.38
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.14
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.29

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.98  E-value=1.2e-32  Score=213.43  Aligned_cols=119  Identities=19%  Similarity=0.286  Sum_probs=104.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+++++||+||+.++...+.   .+..+  .++++.++++.+|+++..+++|++|||||||||+|||||+++|++|||
T Consensus        89 ~~~L~~~ltV~eni~~~~~~~~---~~~~e--~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLll  163 (240)
T d1g2912          89 SYALYPHMTVYDNIAFPLKLRK---VPRQE--IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM  163 (240)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHTT---CCHHH--HHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             chhhcchhhhhHhhhhhHHHcC---CCHHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            4578999999999998864432   12233  667899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      |.||++   .|||+.+|.+  |||+++.+
T Consensus       164 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~---vTHd~~~~~~~~drv~vm~~  215 (240)
T d1g2912         164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY---VTHDQVEAMTMGDRIAVMNR  215 (240)
T ss_dssp             ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             cCCCcccCHHHHHHHHHHHHHHHhccCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            99999999999999988543      779999   9999999988  99999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.98  E-value=1.3e-32  Score=213.51  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=102.9

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +++|+++||+||+.++....   ..+..+  .++++.++++.+||++..+++|++|||||||||+|||||+++|++||||
T Consensus        91 ~~L~p~ltv~eni~~~l~~~---~~~~~~--~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllD  165 (242)
T d1oxxk2          91 WALYPNLTAFENIAFPLTNM---KMSKEE--IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD  165 (242)
T ss_dssp             SCCCTTSCHHHHHHGGGTTS---SCCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             ccccccccHHHHhhhhhHhh---cCCHHH--HHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeec
Confidence            46899999999999875332   112223  6678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.      |.||++   .|||+.+|..  ||++++.+
T Consensus       166 EPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~---vTHd~~~~~~~~dri~vm~~  216 (242)
T d1oxxk2         166 EPFSNLDARMRDSARALVKEVQSRLGVTLLV---VSHDPADIFAIADRVGVLVK  216 (242)
T ss_dssp             STTTTSCGGGHHHHHHHHHHHHHHHCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhccCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence            9999999999998888433      779999   8999999988  99999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3e-32  Score=211.23  Aligned_cols=118  Identities=26%  Similarity=0.333  Sum_probs=103.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +++++.+||+||+.++.....   .+..+  .++++.++|+.+||.+..+++|++|||||||||+|||||+.+|++||||
T Consensus        91 ~~l~~~~tv~eni~~~l~~~~---~~~~~--~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllD  165 (240)
T d3dhwc1          91 FNLLSSRTVFGNVALPLELDN---TPKDE--VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD  165 (240)
T ss_dssp             CCCCTTSBHHHHHHHHHHTTT---CCTTH--HHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             cccCCCccHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEec
Confidence            468999999999998754321   22233  6678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.      |.||++   .|||+.+|..  ||++++.+
T Consensus       166 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~---vTHdl~~~~~~~dri~vl~~  216 (240)
T d3dhwc1         166 EATSALDPATTRSILELLKDINRRLGLTILL---ITHEMDVVKRICDCVAVISN  216 (240)
T ss_dssp             SGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE---EBSCHHHHHHHCSEEEEEET
T ss_pred             cccccCCHHHhhHHHHHHHHHHhccCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            9999999999999988544      779999   9999999987  99999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2e-32  Score=212.08  Aligned_cols=118  Identities=17%  Similarity=0.242  Sum_probs=98.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+|+++||++|+.++...+.   .++.+  .++++.++|+.+||++..+++|.+|||||||||+|||||+.+|++||||
T Consensus        87 ~~l~~~ltv~enl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          87 YAVWPHMTVYENIAFPLKIKK---FPKDE--IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             -----CCCHHHHHHTTCC--C---CCHHH--HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             hhhcccchHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            468999999999998754331   22233  6678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+||||.++.++++.+.      |.||++   .|||+.+|..  ||++++.+
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~---vTHd~~~a~~~~dri~vm~~  212 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY---VTHDQVEAMTMGDRIAVMNR  212 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999888433      779999   8999999988  99999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.2e-32  Score=212.56  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=67.4

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++++||+||+.++.....   .++.+  .++++.++++.+++.+..+++|++|||||||||+|||||+++|++||||
T Consensus        81 ~~l~~~~tv~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD  155 (232)
T d2awna2          81 YALYPHLSVAENMSFGLKLAG---AKKEV--INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  155 (232)
T ss_dssp             CCC------------------------CH--HHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE
T ss_pred             cccccchhHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            468999999999998854332   22233  6678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.      |.||++   .|||+.+|..  ||++++.+
T Consensus       156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~---vTHd~~~a~~~~dri~vm~~  206 (232)
T d2awna2         156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIY---VTHDQVEAMTLADKIVVLDA  206 (232)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHSCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999998887543      779999   8999999998  99999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=7.5e-32  Score=207.82  Aligned_cols=121  Identities=25%  Similarity=0.283  Sum_probs=99.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+||+||+.++..+.........+  ..+++.++|+.+|+.+ ..+++|.+|||||||||+|||||+++|++|||
T Consensus        92 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLll  169 (230)
T d1l2ta_          92 FNLIPLLTALENVELPLIFKYRGAMSGEE--RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA  169 (230)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCCSSCCCHHH--HHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hhhCcCccHHHHHhHHHHHhccCCCCHHH--HHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEe
Confidence            57899999999999875432111111122  5668889999999976 57999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||+|||+.++..+++.+.      |.||++   .|||+.+|.. |||+++.+
T Consensus       170 DEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~---vTHd~~~a~~~drv~~m~~  220 (230)
T d1l2ta_         170 DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV---VTHDINVARFGERIIYLKD  220 (230)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE---ECSCHHHHTTSSEEEEEET
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHhhCCEEEE---ECCCHHHHHhCCEEEEEEC
Confidence            99999999999999998544      679999   6778877744 99999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=6.8e-32  Score=209.19  Aligned_cols=117  Identities=20%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+.+|+++||+||+.++..  ..   .+.+  .++++.++++.+|+++..+++|++|||||||||+|||||+++|++|||
T Consensus        78 ~~~l~~~ltV~enl~~~l~--~~---~~~~--~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl  150 (240)
T d2onka1          78 DYALFPHLSVYRNIAYGLR--NV---ERVE--RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL  150 (240)
T ss_dssp             SCCCCTTSCHHHHHHTTCT--TS---CHHH--HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred             chhhcccchhhHhhhhhhc--cc---CHHH--HHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEe
Confidence            3578999999999998732  11   1123  557899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+..+++.+.      |.||++   .|||+.+|..  ||++++.+
T Consensus       151 DEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~---vtHd~~~~~~~adri~vm~~  202 (240)
T d2onka1         151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILH---VTHDLIEAAMLADEVAVMLN  202 (240)
T ss_dssp             ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999888543      679999   8999999998  99999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=7.9e-32  Score=207.60  Aligned_cols=116  Identities=21%  Similarity=0.246  Sum_probs=101.2

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      .+++|+++||+||+.++...+   .   ..  ..+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||
T Consensus        80 ~~~l~~~~tV~enl~~~~~~~---~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll  151 (229)
T d3d31a2          80 NYSLFPHMNVKKNLEFGMRMK---K---IK--DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL  151 (229)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHH---C---CC--CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             ccccCccccHHHHHHHHHhhc---c---cc--HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceee
Confidence            357899999999999875322   1   12  345788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+..+..+++.+.      |.||++   .|||+.+|..  |||+++.+
T Consensus       152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~---vtHd~~~~~~~~drv~vm~~  203 (229)
T d3d31a2         152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLH---ITHDQTEARIMADRIAVVMD  203 (229)
T ss_dssp             ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE---EESCHHHHHHHCSEEEEESS
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence            99999999999998888543      679999   8999999998  99999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=9.7e-30  Score=198.66  Aligned_cols=119  Identities=21%  Similarity=0.265  Sum_probs=100.2

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFF   90 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL   90 (137)
                      +.+++.+||++|+.++.....  .....+  ..+++.++++.+|+.+. .+++|++|||||||||+|||||+.+|++|||
T Consensus        98 ~~l~~~~tv~env~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llil  173 (258)
T d1b0ua_          98 FNLWSHMTVLENVMEAPIQVL--GLSKHD--ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF  173 (258)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTT--CCCHHH--HHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             hhhccchhcchhhhhhHHHhc--CCCHHH--HHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEe
Confidence            468999999999987642111  112222  56789999999999875 5788999999999999999999999999999


Q ss_pred             eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      ||||+|||+.++.++++.++     |.||++   .|||+.+|..  ||++++.+
T Consensus       174 DEPT~gLD~~~~~~i~~ll~~l~~~g~til~---vtHdl~~~~~~adri~vm~~  224 (258)
T d1b0ua_         174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVV---VTHEMGFARHVSSHVIFLHQ  224 (258)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred             ccccccCCHHHHHHHHHhhhhhcccCCceEE---EeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999988554     679999   8899999988  99999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=1.3e-29  Score=196.00  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=97.8

Q ss_pred             CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc-CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317           11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF   89 (137)
Q Consensus        11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl   89 (137)
                      ...+|+.+||++|+.++...+.    ....  ..+.++++++.+ ++.+..++++++|||||||||+|||||+++|++||
T Consensus        89 ~~~l~~~ltv~en~~~~~~~~~----~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLl  162 (240)
T d1ji0a_          89 GRRIFPELTVYENLMMGAYNRK----DKEG--IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM  162 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGTTCC----CSSH--HHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             ccccCCcccHHHHHHHHHHhcC----CHHH--HHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEee
Confidence            3568999999999987643221    1112  445566777777 68888999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||+|||+.++.++++.+.     |.||++   .+||+.++..  |||++|.+
T Consensus       163 lDEPt~gLD~~~~~~i~~~i~~l~~~g~til~---~tH~l~~~~~~~drv~vl~~  214 (240)
T d1ji0a_         163 MDEPSLGLAPILVSEVFEVIQKINQEGTTILL---VEQNALGALKVAHYGYVLET  214 (240)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred             ecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            999999999999999988544     679999   8888888888  99999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=2.2e-29  Score=195.95  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=100.6

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhH--------HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc
Q psy317           12 DSMDPKKTPLTRMQISNGMMVL--------AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN   83 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~   83 (137)
                      +.+++++||+||+.++......        ......++...+++.++++.+++....++++++|||||||||+|||||++
T Consensus        88 ~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~  167 (254)
T d1g6ha_          88 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT  167 (254)
T ss_dssp             CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred             cccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHh
Confidence            3478899999999986422110        00011122245678899999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           84 NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      +|++|||||||+|||+.++.++++.+.     |.||++   .+||+.++..  |||+++.+
T Consensus       168 ~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~---vsHdl~~~~~~~Drv~vm~~  225 (254)
T d1g6ha_         168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI---IEHRLDIVLNYIDHLYVMFN  225 (254)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCCSTTGGGCSEEEEEET
T ss_pred             CcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHHhCCEEEEEeC
Confidence            999999999999999999999988543     789999   8899999888  99999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4.8e-29  Score=192.67  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=101.5

Q ss_pred             CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317           12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD   91 (137)
Q Consensus        12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD   91 (137)
                      +.+++++|+.||+.+...++..   ...+  ..++++++++.+++.+..++++++||||||||++|||||+++|++||||
T Consensus        84 ~~~~~~ltv~e~l~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD  158 (238)
T d1vpla_          84 AGAYRNMQGIEYLRFVAGFYAS---SSSE--IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  158 (238)
T ss_dssp             CCCCTTSBHHHHHHHHHHHHCC---CHHH--HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cccCCCccHHHHHHHHHHhcCC---CHHH--HHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            4578999999999886543211   1122  5567888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||+|||+.++.++++.+.     |.||++   +|||+.++..  |||+++.+
T Consensus       159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~---~tH~l~~~~~~~drv~vl~~  208 (238)
T d1vpla_         159 EPTSGLDVLNAREVRKILKQASQEGLTILV---SSHNMLEVEFLCDRIALIHN  208 (238)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEE---EECCHHHHTTTCSEEEEEET
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence            9999999999999988553     779999   8999999998  99999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=173.65  Aligned_cols=124  Identities=16%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      ++...+.+.|+++|+.++........ ............+.++.+  |+....++.+.+|||||||||+|||||+++|+|
T Consensus        94 ~Q~~~lf~~tv~eni~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~i  172 (251)
T d1jj7a_          94 GQEPQVFGRSLQENIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV  172 (251)
T ss_dssp             CSSCCCCSSBHHHHHHCSCSSCCCHH-HHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cccccccCcchhhhhhhhhcccchHH-HHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcE
Confidence            34444556899999998732111000 000000112233445555  556667788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||||||+||+.+...+++.+.      +.||++   .|||+..+.. |+|++|.|
T Consensus       173 lilDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~---itH~l~~~~~aDrI~vl~~  226 (251)
T d1jj7a_         173 LILDDATSALDANSQLQVEQLLYESPERYSRSVLL---ITQHLSLVEQADHILFLEG  226 (251)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE---ECSCHHHHHTCSEEEEEET
T ss_pred             EEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEE---EeCCHHHHHhCCEEEEEEC
Confidence            99999999999999998888653      569999   5666665544 99999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.6e-25  Score=170.57  Aligned_cols=110  Identities=16%  Similarity=0.299  Sum_probs=92.1

Q ss_pred             CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc-------CCCE
Q psy317           15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-------NPPI   87 (137)
Q Consensus        15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~-------~P~i   87 (137)
                      ....++++++.++..    .    ..  ..+++.++++.+++.+..++++++||||||||++|||||++       +|++
T Consensus        84 ~~~~~v~~~~~~~~~----~----~~--~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l  153 (231)
T d1l7vc_          84 PFATPVWHYLTLHQH----D----KT--RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL  153 (231)
T ss_dssp             CSSCBHHHHHHHHCS----C----TT--CHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred             CccccHHHHhhhccc----h----hh--HHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence            345677887765321    1    11  34577889999999999999999999999999999999997       7799


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~  137 (137)
                      |||||||+|||+.++..+++.+.     |.||++   .+||+.++..  ||++++.+
T Consensus       154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~---vtHdl~~~~~~~dri~vl~~  207 (231)
T d1l7vc_         154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM---SSHDLNHTLRHAHRAWLLKG  207 (231)
T ss_dssp             EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEE---CCCCHHHHHHHCSBCCBEET
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHHCCEEEEEEC
Confidence            99999999999999998887544     779999   8899999998  99999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.9e-25  Score=171.55  Aligned_cols=123  Identities=23%  Similarity=0.304  Sum_probs=83.8

Q ss_pred             cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317           10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI   87 (137)
Q Consensus        10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i   87 (137)
                      ++...+++.|+++|+.++.........  ........+.+.+..+  |+....+..+..|||||||||+|||||+.+|+|
T Consensus        83 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          83 LQDNVLLNRSIIDNISLANPGMSVEKV--IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             CSSCCCTTSBHHHHHCTTSTTCCHHHH--HHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             ecccccCCccccccccccCccccHHHH--HHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            555556678999999876321100000  0000001112222222  233345667899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||||||+||+.+...+++.+.    +.||++   .||++..+.. |+|+++.+
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~---itH~l~~~~~~D~i~vl~~  212 (241)
T d2pmka1         161 LIFDEATSALDYESEHVIMRNMHKICKGRTVII---IAHRLSTVKNADRIIVMEK  212 (241)
T ss_dssp             EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEE---ECSSGGGGTTSSEEEEEET
T ss_pred             hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHhCCEEEEEEC
Confidence            99999999999999999888654    679999   5556655544 99999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.91  E-value=6.2e-25  Score=170.97  Aligned_cols=115  Identities=24%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSI   77 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~I   77 (137)
                      .++...+++.|+++|+.++....           ..+++.+.++.+++.           ......+.+||||||||++|
T Consensus        97 v~Q~~~lf~~Ti~eNi~~g~~~~-----------~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~i  165 (255)
T d2hyda1          97 VQQDNILFSDTVKENILLGRPTA-----------TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI  165 (255)
T ss_dssp             ECSSCCCCSSBHHHHHGGGCSSC-----------CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred             eeccccCCCCCHHHHHhccCcCC-----------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHH
Confidence            34555666789999998763110           112333445554443           23445567899999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      ||||+++|+|||||||||+||+.+...+++.+.    +.||++   .||++..+.. |+|++|.+
T Consensus       166 ARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~---itH~~~~~~~~D~ii~l~~  227 (255)
T d2hyda1         166 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI---VAHRLSTITHADKIVVIEN  227 (255)
T ss_dssp             HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEE---ECSSGGGTTTCSEEEEEET
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhCCEEEEEEC
Confidence            999999999999999999999999998888553    669999   4555555444 99999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.1e-24  Score=169.30  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=86.4

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317            9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALEL   81 (137)
Q Consensus         9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL   81 (137)
                      .++...+...|+.+|+.++..-....    ++  ..+     .+.+.++.+  |++...+..+.+|||||||||+|||||
T Consensus        94 v~Q~~~l~~~ti~~n~~~~~~~~~~~----~~--i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal  167 (253)
T d3b60a1          94 VSQNVHLFNDTVANNIAYARTEEYSR----EQ--IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  167 (253)
T ss_dssp             ECSSCCCCSSBHHHHHHTTTTSCCCH----HH--HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             EeeccccCCcchhhhhhhcCcccCCH----HH--HHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence            34555666789999998763111000    00  111     112334443  455566778899999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317           82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD  137 (137)
Q Consensus        82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~  137 (137)
                      +.+|++||||||||+||+.+...+++.+.    +.||++   .|||+..+.. |+|++|.+
T Consensus       168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~---itH~l~~~~~~D~v~vl~~  225 (253)
T d3b60a1         168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV---IAHRLSTIEQADEIVVVED  225 (253)
T ss_dssp             HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE---ECSCGGGTTTCSEEEEEET
T ss_pred             hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEE---EECCHHHHHhCCEEEEEEC
Confidence            99999999999999999999998888544    679999   5566655544 99999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=1.9e-24  Score=166.99  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=62.9

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEe
Q psy317           61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLI  135 (137)
Q Consensus        61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~  135 (137)
                      ...+.+|||||||||+|||||+.+|+|||||||||+||+.+...+++.+.    +.||++   .||++..+.. |+|+++
T Consensus       134 ~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~---itH~l~~~~~~D~i~vl  210 (242)
T d1mv5a_         134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV---IAHRLSTIVDADKIYFI  210 (242)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE---ECCSHHHHHHCSEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEE---EECCHHHHHhCCEEEEE
Confidence            34567899999999999999999999999999999999999888887544    779999   5666665544 999998


Q ss_pred             cC
Q psy317          136 SD  137 (137)
Q Consensus       136 ~~  137 (137)
                      .+
T Consensus       211 ~~  212 (242)
T d1mv5a_         211 EK  212 (242)
T ss_dssp             ET
T ss_pred             EC
Confidence            64

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.88  E-value=3.9e-23  Score=155.19  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317           13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE   92 (137)
Q Consensus        13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE   92 (137)
                      .++..+|+.+++.+...++..     ..  ..+++.+.++.+++.+ .++++++||||||||++|||||+.+|+++||||
T Consensus        80 ~~~~~~t~~~~l~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE  151 (200)
T d1sgwa_          80 IVPRKISVEDYLKAVASLYGV-----KV--NKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD  151 (200)
T ss_dssp             CCCTTSBHHHHHHHHHHHTTC-----CC--CHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred             cCCCCcCHHHHHHHHHHhcCC-----cc--CHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence            355679999999865433211     11  2345667888888865 456789999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317           93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS  136 (137)
Q Consensus        93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (137)
                      ||+|||+.++..+++.+.     +.++++++|  |++..  .|++.+|+
T Consensus       152 Pt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~--~~l~~--~D~~~~l~  196 (200)
T d1sgwa_         152 PVVAIDEDSKHKVLKSILEILKEKGIVIISSR--EELSY--CDVNENLH  196 (200)
T ss_dssp             TTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES--SCCTT--SSEEEEGG
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCEEEEEEe--chhhh--cchhhhee
Confidence            999999999998887544     224444443  66643  47776653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.8e-23  Score=163.39  Aligned_cols=76  Identities=16%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc-Cce
Q psy317           59 HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR-NEV  132 (137)
Q Consensus        59 ~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~-~~~  132 (137)
                      ..++.+.+|||||||||+|||||+++|+||||||||++||+.++..+++.+     .+.|+++.|   |++..+.. |||
T Consensus       151 ~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~it---H~~~~l~~aDrI  227 (281)
T d1r0wa_         151 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKMEHLRKADKI  227 (281)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEEC---SCHHHHHTCSEE
T ss_pred             hhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEe---chHHHHHhCCEE
Confidence            345567789999999999999999999999999999999999998888742     266999944   55544433 999


Q ss_pred             EEecC
Q psy317          133 CLISD  137 (137)
Q Consensus       133 ~~~~~  137 (137)
                      ++|.+
T Consensus       228 ~vl~~  232 (281)
T d1r0wa_         228 LILHQ  232 (281)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=3.7e-09  Score=82.58  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             cCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceE
Q psy317           63 MTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVC  133 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~  133 (137)
                      ....+|||||.++++|..+    ..++++++||||+++||+..+..+.+.+.     +.-++++||.++-+.-|  |+.|
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~a--d~~~  406 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKS--DALV  406 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTC--SEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhc--ccEE
Confidence            4477899999998776543    45778999999999999999998888663     23588977776644443  6665


Q ss_pred             Ee
Q psy317          134 LI  135 (137)
Q Consensus       134 ~~  135 (137)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=4.8e-06  Score=62.44  Aligned_cols=71  Identities=21%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             cCCCCCHHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEE
Q psy317           63 MTSNLSGGQKKRLSIALE----LVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCL  134 (137)
Q Consensus        63 ~~~~LSgGqkqrv~IArA----L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~  134 (137)
                      ....+|+|+|+...++..    ....|.++++|||-++|+|.....+.+.+.    +.-|++|||.+.=++.+  |++|.
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~--d~~~~  293 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAA--DLLHG  293 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGC--SEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhc--ccEEE
Confidence            467899999998877665    355779999999999999999998888664    56889988888766544  56555


Q ss_pred             e
Q psy317          135 I  135 (137)
Q Consensus       135 ~  135 (137)
                      +
T Consensus       294 v  294 (308)
T d1e69a_         294 V  294 (308)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.91  E-value=1.1e-05  Score=55.65  Aligned_cols=59  Identities=8%  Similarity=-0.198  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CHHhHHHHHHhhc--cceeeeeccccch
Q psy317           65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL--HKAEFTPKYERKV--DTKVDYTGNRTQN  123 (137)
Q Consensus        65 ~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgL--D~~~~~~i~~~~~--~~~v~~~~~~~~~  123 (137)
                      ..+|+|++++.++++++..+|+++++|||....  +......+.+.+.  +.+|++++|..+-
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~  142 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV  142 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH
Confidence            347899999999999999999999999985443  3444445555555  5688888877653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.14  E-value=1  Score=32.00  Aligned_cols=55  Identities=7%  Similarity=0.036  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhc--cceeeeeccccchhh
Q psy317           70 GQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKV--DTKVDYTGNRTQNLQ  125 (137)
Q Consensus        70 Gqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~--~~~v~~~~~~~~~~~  125 (137)
                      .+-+++.-..--+.+..++|+||+..|=++.+...+..    .+.  +..++++||. |++.
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~-~eL~  160 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY-FELT  160 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC-HHHH
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeec-hhhh
Confidence            34455544444567888999999999999987764444    322  5577887875 3443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=1.4  Score=31.34  Aligned_cols=56  Identities=11%  Similarity=-0.002  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH----Hhhc---cceeeeeccccchhhh
Q psy317           70 GQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY----ERKV---DTKVDYTGNRTQNLQQ  126 (137)
Q Consensus        70 Gqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~----~~~~---~~~v~~~~~~~~~~~~  126 (137)
                      .+.+++.-..--+.+..++|+||+..|=++.+...+.    +.+.   +..++++||. |++..
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~-~~l~~  168 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY-FELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC-GGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecch-HHHhh
Confidence            3444444444457777899999999999998886553    3332   2356676664 34433